>input_sequence_48212
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---------------------------------------------------------GG-CCCACCCTCCATACAAATGG
AAAACCCTAATAAGAAACCCTAAGAAACCCTTCTCCCCCGCCACCGGCCACCACCCCGAC-------------------C
ACGAGCAAGACAACCGGACAACGGAAGCGGCGATGGGATGCACGGCGTCCACGCGACGTGCGGGGCGGGGCTCGCTCGTG
TTCGAGGTCTCAGGGTACGGCGGAGTTAGCCTCGACGTACAATCATCGGAAGTATTCACCGTCGGCGCTTACGACTGGCA
GATTCGTTTCTATGAGGAAGGAGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGG
CCAAGGTGAGGGCAACCTTCGAGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGCC
GCAGAATTCGACTCTGGCGACCGGACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGACCTCGAGGCGTCGCCTTA
CCTTCGCGGCGGCGATCGCCTCACAATTGAGTGTACCATCACTATCTGCACGGAAG---------CGCCCAAATCATTTG
TTGAGGTGCCGTTGCCGCCATCCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCACCGATGTCACC
TTCGAGGTTCAAGGGGAGGCTTTTCCTGCCCACAAGACAGTGCTCGCGATGCGGTCACCGGTGTTTAAGGCAGAGTTGTA
CGGTGCCTTGAGGGAAAATGATATGGGTCGCGTTATCATCGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATT
TTATATACACCGATTCGTTGCCCACCATGCATGATCTTTACCAAGATCAAGATGAGTACAAAGAGATTATTGGACATTTG
CTTGTAGCCGCGGATCGCTATGCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATTCGAA
GACCGTGGTGACTACACTGCCTTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCT
CTTTGGGTAAAGTGGATGATATAATAGCAAGCCAGGGATATGATGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAA
CTGTGGGAGAAGGCAACTAGGCTGTACATGATATAGTCTTCATTTCACATTGGCATGTGTGTTAAGTCACATACATATCT
TGCTACTTGTTTGATGAAGGATTAGTTTATTTTAATATATCTGAAGCTTTGGTGGAAAACAGTATTACTCTGCTAATGTT
TTTCGTTTGTCAAGATGTTGCATACTTATCCTTTTAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTCTGTTCGAAAATTTTGTCATAGGTTTTAATTACCACACTACATGTGCAGGCTAGTGTATGCTACTCACTTCAATGAT
GATATCTGCCGTAACGAATAAGCAGCAAAATGCGACAAGAGTGGGACAGGAGTGTGTTAATGTGATTATATGGGAACATT
TCGTCATAATATGAAATTCGAAACGGGAGAATGAATGCCACATTTTCGA-------------------------------
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>chr3B_1_TraesCS3B01G201600
TGAATATATTTTAGACGTGATATGCTTTCAATATCCAAAAGGTGAAATGGAAATATGTAACGAAAGATATCTCAAACTGC
CTTGTTAACAGGGTTTAAGTAGACAACAATGCTCTTTGTCTGTGATGACACAACAAAATCAACCCAGTTATTGAGATGAG
TAGCCAGCATGATGTCAAATTCGAATTTGACATGGAATTCTTTGACCACCGTGCCGTGGAAATTTCTCAAGACTGCATTG
ACATCATTGATAAATTTCTGCATGTATTCACAATATTCTTTTCTTAAAAAACTATCGCGGCAACACCCAGCAGCACCAGT
GAAACATAATTTGTGGCAAGAAACATCGCGGATAGATCTCCAGTGACTTGATAAAACACTGGCCCTTGAAATCTCTTTAG
GAGGCAACTTTGACAAAATTGTGCACATCACATCCTACGTCAACGGAATATAGATGCTTGAGATTACAAGTTATAGCTGT
ACTCGACTGTATATCAAAAAAAGGGAAATTTGACATACATTTGGAAGGTCTCCCAATTTAACGTCTGAGCTCGCCTTCTT
CTAGATTGAATTCCCATGGGTATGGTCTGATGATG-TGCTTTGCGCATTTGATGGCTCCTCATCTGTAAAACTGAATATG
AGAAGTCAGAGTTCCTCCAAGATTATATGATACTCCCTCTGTAAATTAAAATAAAAGCGTTTAGATCACTA---------
---------------GATATTCACAAGTGTATTAACTGCTAGTAGTAGGCATTACTGTAGATAATCCGAGGAACTACTCC
CTCCGTTTCATAATATAAGAATGTTTTTGGCACTCAGAGGGAGTAGTTGTTTGTCGTCGGTGCCAGCGCTTCGGTGCTTG
GGAGGTCCGATTG-------------------------------------------------------------------
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---------ATGTCGGCTTTTAACGGGACGT-GAGACGATTTGATTCGGCCAGGGC------------------------
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---------------------------------------------------TGGACTCGGATTCCTGGGCCCGATTTTAG
AGAGGATAGCGAAGCGCGTTCCGCTTCCCGGCCCAACCCTCTTTCCTTCCGCTTCTCGG-CCCACCCTCCATACAAATGG
AAAACCCTAATAAGAAACCCTAAGAAACCCTTCTCCCCCGCCACCGGCCACCACCCCGAC-------------------C
ACGAGCAAGACAACCGGACAACGGAAGCGGCGATGGGATGCACGGCGTCCACGCGACGTGCGGGGCGGGGCTCGCTCGTG
TTCGAGGTCTCAGGGTACGGCGGAGTTAGCCTCGACGTACAATCATCGGAAGTATTCACCGTCGGCGCTTACGACTGGCA
GATTCGTTTCTATGAGGAAGGAGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGG
CCAAGGTGAGGGCAACCTTCGAGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGCC
GCAGAATTCGACTCTGGCGACCGGACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGACCTCGAGGCGTCGCCTTA
CCTTCGCGGCGGCGATCGCCTCACAATTGAGTGTACCATCACTATCTGCACGGAAG---------CGCCCAAATCATTTG
TTGAGGTGCCGTTGCCGCCATCCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCACCGATGTCACC
TTCGAGGTTCAAGGGGAGGCTTTTCCTGCCCACAAGACAGTGCTCGCGATGCGGTCACCGGTGTTTAAGGCAGAGTTGTA
CGGTGCCTTGAGGGAAAATGATATGGGTCGCGTTATCATCGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATT
TTATATACACCGATTCGTTGCCCACCATGCATGATCTTTACCAAGATCAAGATGAGTACAAAGAGATTATTGGACATTTG
CTTGTAGCCGCGGATCGCTATGCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATTCGAA
GACCGTGGTGACTACACTGCCTTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCT
CTTTGGGTAAAGTGGATGATATAATAGCAAGCCAGGGATATGATGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAA
CTGTGGGAGAAGGCAACTAGGCTGTACATGATATAGTCTTCATTTCACATTGGCATGTGTGTTAAGTCACATACATATCT
TGCTACTTGTTTGATGAAGGATTAGTTTATTTTAATATATCTGAAGCTTTGGTGGAAAACAGTATTACTCTGCTAATGTT
TTTCGTTTGTCAAGATGTTGCATACTTATCCTTTTAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTCTGTTCGAAAATTTTGTCATAGGTTTTAATTACCACACTACATGTGCAGGCTAGTGTATGCTACTCACTTCAATGAT
GATATCTGCCGTAACGAATAAGCAGCAAAATGCGACAAGAGTGGGACAGGAGTGTGTTAATGTGATTATATGGGAACATT
TCGTCATAATATGAAATTCGAAACGGGAGAATGAATGCCACATTTTCGAACTC----GTGTTGTAAAATAATAGGGGTGC
ATTTGAAACAATAATTCTTGCACTGGAAGGTGTTCAATTTCCTTTGCCAGGTACTTTTCTGTTCTTGCATCCTCCAATTG
GTTTCAGTTTTTATTTTACTTATTACCTGAAAAGTTGAGACTGAATCCATAAAAAGTTGACCCATCGGTAAGCTTTTAAT
TC-TTTTACAAATATAAAATGAAATAAGTAATCAATCTAACCTATAAAATGATTGAGTACCACCACATCATCCATCTATA
CTGTTATATAAACATCATC-GGTACATCACAGTATTGGGCAACTGGCCTATATCATGCTATTACTTTGAATGAAACACAT
TTGTACTATATGACAGTAACTAATTGGAAGAGTGCAGTATGTTAATGCACCTGCATATCCTTGAGGAATAAAATATCGAA
TAAAAGTTGACATTTGAAAGTACCCCTTGTGTTGTAAATTAATCATTTTGATACAGAAGGAACGCAA-------------
----------------------------------------------------------------------TAATGAAG--
AAGCATGTAAAAAACTGGGGAAAGTATTGTTCGTAACAGGTTATATGCAGCCCTACCGTCTACAGGAACGCATCAAAGCA
AACTTTGGAACTTGGTGCATGTCAGGC-AAGTCGGGATTTAGTTGTTATTTACAGAGGTGATTTCTGTTCCCTTTAATTT
GTAGGAATTTGGGGCAGGGAAGCAACTGAATATCTTTTTCAAAAGTATTCTCAATCTGATTTGTATGTGACGAGATTATT
AATCAGTTTGATTGATTGAGATATTTTTTGTATTTGCCGCAGCATGTA-----TGTACCAAGCAGGATTGCAAGTCATTC
TCACCTTAGGATAGTATTCATACCTATTAGCAAGTCTACATGGATCATTTAATGTTGCAATTGTGTGCTGACCCAAAACC
CTAGAAATAGTTCAACCATTTTCCTCAAAGGCGTATTATTACATCTAAGGCAAAATCAATTGATTAGTTTTACTATTTCT
AACGTTTCTAAGTAGTGTTGAACCAT
>chr3D_1
TGAATACATTCTAGACGTGATTTGCTTTCAGTATCCAAAAGGTGAAATGGAAATATGTAACGAAAGATATCTCAAACTGC
CTTGTTAACCGGCCATAAGTAGATAGCAATGCTCTTTGTCTGTGACGACACAACAAAATCAACACATTTATTGAGATGAG
TAGCCAGCATGATGTCAAATTCGAATTTGACATGGAATTCTTCGACCACCGTCCCATGGAAATTTCTCAAGACTGCATTG
ACATCATTGATGAGCTTGTGCATGTATTCATAACATTCTTTTCTTGAAAAGCTATCACGGCAACACCCAGCAGCACCAGT
GAAACATAATTTGTGGCAAGAAATATCGCGGATAGGTCTCCAGTGACTTGACAAAACACTGGCCCTTGAAATCTCTTTAG
GAGGCAACGTTGACAAAATTATGCACATCACATCCTGCGTTAACGGAATATAGATGCTCAAGATTACAAGTTATAGTTGT
ACTCGACTGTATATCAGAAAAAGGAAAATTTGGCACACATTTGAAAGGTCTTCCAATTTAATGTGTGACCTCGACTTCTT
ATAGATTGAATTCCCATGGGTATGGTCTGATGATGTTGCTTTGCACATTTGATGCCTCCCCATTTGTAAAACCGAATATG
AGAAGTCAGAGTTCCTCCAAGATTATATG---------------------------------------------------
--GTATTAACTAGTGGATATTCACAAGTGTATTAACTAGTAGTAGTAGGCATTACCGTGGATAATTCGAGGAACTAGTA-
------------------------------------------------GTTTGTCGTCGGTGCCAGCGGTTCGGTGCTTG
GGGGGTCCGATTGTTTTTTTTTAAGAAAACCCGCCCACTTTATTGATTCATCTCAATGATCATAGGTACAAGGTTTTGTT
CATGGGGTAGTCCCAACCAAATGTGTCGGCCAGGCCCAAGATTACAATCAAACTTGGCGAGATTATGAGCTTTTAAATTA
AACAAACTACGCTCATGACTAAAACAGCAAAAAGCAAAAGTATTTCTAGTGAAATTAATCTCCTTTATTATGGCGCCGTG
TTCTCCACCAGATTCTTTTTTTTAGCACTGTTCTCCACCAGATTCATTCCCAATATCTTTGATCACCCCCTCACAATCAG
AAAGAAGCAATGTTGGCTTTTAACAGGACGTCGAGACCATTTGATTCGTCCAGG--------------------------
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------------------------------------------AGGAGGAATTGGACTCGGATTCCTGGGCCCGATTTTAG
AGAGGAAG--GAAGCGCGTTCCGCTTCCCGGCCCAACCCTCTTTCCTTCCGCTTCCCGGCCCAACCCTCCATACAAATGC
AAAACCCTAATAAGAAACCCTAAGAAACCCTTCTCCCCCGCCACCGGCCACCACCCCGAC-------------------C
A-------------------ACGGAGGCAGCGATGGGATGCACGGCGTCCACGCGACGTGCGGGGTGGGGCTCGCTCGTG
TTCGATGTCTCAGGGTACGGCGGAGTTAGCCTCGACGTACAATCATCAGAAGTATTCACCGTCGGCGCTTACGACTGGCA
GATTCGTTTCTATGAGGAAGGAGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGG
CCAAGGTGAGGGCAACATTCGAGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGAC
GCAGAATTTGACTCTGGCGACCGAACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGAGCTCGAGGCGTCGCCTTA
CCTTCGC---GGCGATCGCCTCACAATTGAGTGTGCCATCACTATCTGCAAGGAAGCGCCGGTCTCGTCGAAATCGTTTG
CTGAGGTGCC------GCCATCCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCAGCGATGTCACC
TTCGAGGTTCAAGGGGAGGCTTTTCCTGCCCACAAGACGGTGCTCGCGATGCGGTCGCCGGTGTTTAAGGCAGAGCTGTA
CGGTGCCTTGAGGGAAAATGATATGGGTCGCGTTATCATTGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATT
TTATATACACCGATTCATTGCCCACCATGGATGATCTTTACCAAGATCAAGATGAATACAAAGAGATTATTGGACATTTG
CTTGTAGCCGCGGATCGGTATGCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATGTGAA
GACCGTGGTGACTACACTGGCTTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCT
CTTTGGGTAAAGTGGATGATATAATAGCAAGCCAGGGATATGCTGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAA
CTGTGGGAGAAGGCAACTAGGCTCTACATGATATAGTCTTCATTTCACATTGGCATGCGTGTTAAGTCGCATACATATCT
TGCTACTTGTTTGATGAAGGATTAGTTTATTTTAATATATATGGAGCTTCGGTGAAAAACAGTACTACTCTGCTAATGTT
TTTCATTTGCCAAGATGTTGCATACTTATCCTTTTAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTTTGTTA-AAAATTAAGTCATAGGTTTTAATTACCACACTACATGTGCAGGCTAGTGTATGCTACTCAGTTCGATGGT
GATATCTGCCGTAACGAATAAGCAGCAAAATGCGACAAGAGTGGGCCAGGAGTGTGTTAATGTGATTATAAGGGAACATT
TCATCAAAATATGAAATTCGAAACGGGAGAACGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATGGGGGTGC
ATTTGAAACAATAATTCTTGCACTGGAAGGTGTTCAATTTCTATTGTCAGGTACTTTTCTGTTCTTGCATCCTCCAATTG
GTTTCAGTTTTTATTTTAC---TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCCATCGGTATGCTTTTAAT
-C-TTTTACAAATATAAAATGAATTAAGTAATCAATCTAACCTATGGAATGATTGAGTACCATCACATCATCCAACTATA
CTGTTATATAAACATCATC-GGTACATCACAGTATTGGGCAATTGGCCTATAT--TGCTATTACTTTGAATGAAACACAT
TTGTACTATATGACAGTAACTAATTGGAAGAGTGCAGTATGTTAATGCACCTGCATATCCTTAA-GAATAAAATATCCAA
TAAAAGTTGACATTTGAAAGTACCCCTTGTGTTGTAAAGTAATCATTTTGATACAGAAGGAACGTAA-------------
----------------------------------------------------------------------TAATGAAGGC
AAGCATGTAAAAAACTGGGGAAAGTATTGTTCGTAACAGGTTATATGCAGCCCTACCGTCTACAGGAACGCATCAAAGCA
AACTTCGGAAATTGGTGCATGTCAGGC-AAGTCAGGATTTAGTTGTTATTTACAGAGGTGATTTCTGTTCCCTTTAATTT
GTAGAAATTTGGGGCAGGGAAGCAACGGAATATTTTTTTCAAAAGTATTCTCAAGCTGATTTGTATGTGACGAGATTATT
AATCAGTTTGATC----GAGATATTTTTTGTATTTGACGCAGTATGTA-----TGTACCAAGCAGGATTGCAAGTCAATC
TCACCTTAGGATATTATTCATACCTATTAGCAAGTCTACATGGATCATTTAATGTTGCAATTGTGTGCTGACCCGAAACC
CTAGAAATAGTTCAACCATTTTCCTCAAAGGCGTATTATTACATCTAAGGCAAAATCAATTGATTAGTTTTACTATTTCT
AACGTTTCTAAGTAGTGTTGAACCAT
>chr3A_1
TGAATACATTCTAGACGTGATATGCTTTCAGTATCCAAAAGATGAAATGGGAATATGTAACAAAAGATATCCCAAACTGC
CTTGTTAACAGGACATAAGTTGATAGCAATGCTCTTTGTCTATGACGACACAGAAAAATCAACTCAGTTATTGAGATGAG
TAGCCAACATGATGCCAAATTCAAATTTGACATGGAAATCTTCGACCACCGTGCCATGGAAATTTCTCAAAATTGCATTG
CCATCATTAATGAACTTCTGCATGTATTCACAATATTCTTTTCTTGAAAAACTATCACGGCAACACCCAACAGCACAAGT
GAAACATAATTTGTGGCAAGAAATATCACACATATA--TCAAGTGACTTGACAAAACACCGGCCCTTGAAATCTCTTTAG
GAGGCAACTTTGACAGAATTGTTCACATCACATCCTGCGTCAACGGAATATAGATGCTTGAGATTACAAGTTATAGTTCT
ACTCAACTGTATATCAGAAAAAGGGAAATTTGGCATACATTTGGAAGGCCTTCCAATTTAACGCGGGACCTCGCCTTCTT
ATAGATTGAATTCCCATGGGTATGGTTTGATGATGTTGCTTTGCACATTTGATGGGGCCCCATTTGTAAAACTGAATATG
GGAAGTCAGAGTTCCTCCAAGATTATATGGTACTCCCTCTGTAAACTACTATAAGAACTTTTACAGATCACTAAAGAAGG
GAGTATTAACTAGTGGATATTCACAAGTGTATTA-------------GGCATTACCGTGGATAATCTGAGGAACTAGTA-
------------------------------------------------GTTTGTCGTCGGTGCCAGCGCTTCGGTGCTTG
GGAGGTCCAATTG-------------------------------------------------------------------
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---------ATGTTGGCTTTTAACGGGACGTCGAGACGATTTGAGGAATTTCCTATTTGACGCGCTTTGCGCCAAACTGC
CGGCGCTTCGCACAGGCGAGCGACCGTGCAGCGACACTATGGGCCGGCCCAGTTACGTGGATGACAACCCCAACTAGCCA
GCCGGTTTTGTTTCTTTGACCGGTTTTCTGTTTTTTCCTTCTGTTTTTGTTGCTTTTTCTTTTTTTTTTCTGTTTATTTT
TCTTTTTTCTTTTCAAGGTTATTCTATCTTTTTTAAACTAAGTTCATAAAAAACGTTTGAAATTTCAAAGAATGGCTGTT
TTTCAAAAAATGTTCATAAATTAAAAAAATGCTCGAGACTTTCAACAAATGTTCTTATTTAAAAAAATATTGTGAAATCA
TTTGTTCAAAATGTTCACAACTTTTCAAAAGATGTTCGGGCGGTACAAAACTAGGTCCCATTTTAAAAAATTGTTCGTGA
ATTGCCAAAAATGTTCATGTTTTGATTATTTCGGAGTTTCAGAAAATATCCAAATTTCGTAAATTGTTCACAAGTTTCAA
AAAATGTTCTTGTTTTCAAACTTTTTTCGTGAATTTCAAAATATGTTCGCGTCTTCAAATTTTGGTTTCTGCTTCTTTTT
TGGTTTCTCTGTTTTTGATTCTTTTTCTTTTCGTTTTTTCCTTTATGTTTCTTTTCTATTTTTTTTCTTTTATATTATTT
TCAGAAAAAGTTTGGAATTTTTGTAAAATGTTTGTGCGTTTATAAACATATCAGAATTCAAAATTTTAGTGTTTTAAAAT
TATGTTCATAAATTCAAAACTTGTTCGTATTTAACAAAATTTGTTCGTGTATTAAAAAAATTGTTTTTAAAAGTTATTTT
TATTTTCTGAAAACTGTTCACAAATTTCAAAAAAAAAATTTAGCTTATTAAAGATGATAAAATTGAAGGTAGTTTTTTTT
TTAAATTTTGTTCATAATTTCAAAAAATATTCGTGTATTAAAACAATTGTTTGTGTTTTTTTTAATGTTCCAAATGTTTC
TGCTAAAAAAATACACAACTTCTCAGAACTTGTACCGTATTTTAAAAAATGTTCATGTTTTCATTTTTTGGAGTTTCCAA
AAATGTTCCCGTTTAAAAATGTTCACAAATTTCAAATAAATGTTCGTGTTTTCAAATTTGTTCAGGAGTTTAAAGAATGT
TTGCATTTGCCCAATTTTCTTTTGGAATTTCAAAAATTGTTCCTGTTTTGGGAAAAATTGTTTGTGATTTCGAAAAATGT
TCCTGCTTTTCTAAAAGAAATCATTTTTTAAGCAATTCCCCAATTTGAAAAGTGTTTGCATTCAGAAAACACCTAGTTTA
AAATAATCTTTTAAAATGCTGAAAGTAATTCGGATCTGCTGTGTGGGGTTGATTCTTAAAAACGGACGCTGCAAACTTGT
CGGTAACGCGTGATAGGTCAGTCGGTGGCCGCGCCTGATCTGTATCATGATGTACGAGGTTCGGTTCCCAGCTACGTCCA
GAGAGCGGCGTATAGGACGTCCCACGATTTGATTCGGTCCTAAGGAGGAATTCGACTTGGATTCCTGGGCCCGATTTTAG
AGAGTATAGCGAAGCGCGTTCCGCTTCCCGGCCCAACCCTCTTTCCTTTCGCTTCCCGGTCCAACCCTCCATACAAATGC
-AAACCCTAATAAGAAACCCTAATAAACTCTTCTCCCCCGCCACCGGCCACCACCCCGGCCACGAACAAGACAACCGGGC
A-------------------ACGGAGGCGGCGATGGGATGCACGGCGTCCACGTGACGTGCAGGGCGGGGCTCGCTCGTG
TTCGAGGTCTCAGGGTACGGCCGAGTTAGCCTCGACGTACAATCATCGGAAGTATTCACCGTCGGCTCTTACAACTGGCA
GATTCGTTTCTATGAGGAAGGAGTGCTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGG
CCAAGGTGAGGGCAACCTTCGAGCTCAGTTTGGTGGACATCACAGGATCAACGCCGCCTCGTACGATGAGGACGGTCGCC
GCAGAATTCGACTCTGGCGACCGAACGTGCTTCGGCCATCCCGAGTGCATGAAGAAGAGCAAGCTCGAGGTGTCGCCTTA
CCTTCACA---GCGATCGCCTCACAATTGAGTGTGCCATCACTATCTGCACGGAAG---------CGCCCAAATCGTTTG
CTGAGGTGCCGTTGCCGCCATCCGACATCACGGATCACCTCAGGAAGTTGTGGCAACGGAAAGAGGGAAGCGATGTCACC
TTCGAGGTTCAAGGGGAGGCTTTTCCTGCGCACAAGATAGTGCTCGCGATGCGGTCGCCGGTGTTTAAGGAAGAGTTGTA
CGGTGCCTTGAGGGAAAATGATATGGGTTGTGTTATCATCGGCGACATGCAACCTCTAGTCTTCGAGGCCCTGCTCCATT
TTATATACACCGATTCGTTGCCCACCATGGATGATCTTTACCAATATCAAGATGAGTACAAAGAGATTATTGGACATTTG
CTTGTAGCCGCGGATCGGTATGCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATGTGAA
GACCGTGGTGACTACACTGGTTTTGGCTGATCAGCATCACTACAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCT
CTTTGGGTAAAGTGGATGATATAATAGCAAGCCATGGATATGCTGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAA
CTGTGGAAGAAGGCAACTAGGCTCTACATGATATAGTCTTCATTTCACATTGGCATGCATGTTAAATCACATACATATCT
TGCTACTTGTTTGATGAAGGATTAGTTTATTTGAATATATCTGAAGCTTCGGTGAAG-ACAGTATTACTCTGCTAATGTT
TTTCGTTTGTCAAGATGTTGGATACTTATCCTTT----------------------------------------------
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>chr3A_2309
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----------------------------------TAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTCTGTTCGAAAATTTTGTCATAGGTATTAATTACTACACTACATGTGCAGGCTAGTGTATGCTACTCACTTCAATGAT
GATATCTGCCGTAACAATT-----------------AAGAGTGGGCCAGGAGTGTGTTAATGTGATTATATGGGAACATT
TCATCATAATATGAAATTCGAAACGGGAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACTGCTGC
ATTTGAAACAATAATTCTTGCACTGGAAGGTGTTCAATTTCTATTTTCATGTACTTCTCTGTTCTTGCATCCTCCAATTG
GTTTTCGCTTTTATTTTAC---TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCGATCGGTAAGCTTTTAAT
-CATTTTATAAATATAAAATGAAATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATA
CTGTTATATAAACATCGTTGGGTACATCATAGTATTGAGCAATTGGCCTATATCAGGCTATTACTTTGAATGAAACACAT
TTGTACTATTTGACAATAACTAATTGGAAGATTGCAATTTGTTAATGCACCTGCATCTCCTCGAGGAATAAAATGTCCAA
TAAAAGTTGACATTTGAAAGTACCCCTTGTATTGTAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAAC
AAATATAAGAGCATTTAGATCACTACTTTAGGGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGC
AAGCATGTAAAAAACCGGGGAAAGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAGCA
AACTTAGGAACTTGGTGCATGTCAGGCAAAGTCAGGATTTAGTTGTTATTTACAGAG-----------------------
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--------------------ATATTTTTTGTATTTGCTGCAGTATGTATGTACTGTACCAAGCAGGATTGCAAGTCAATC
TCACCTTAGGATATTATTCATACCTATTAGCAAGTCTACATGGATCATTTAATGTCGCAATTGTGTGCAGACACAAAACC
CTAGAAGTAGTTCAACCATTTTTCTCAAAGGCGTATTATTACATCTAAGGCAAAATCAATTGATTAGTTTTACTATTTCT
AATGTTCCTAAGTAGTGTTGAACCAT
>chr3A_2309
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----------------------------------TAGTGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTCTGTTCGAAAATTTTGTCATAGGTATTAATTACTACACTACATGTGGAGGCTAGTGTATGCTACTCACTTCAATGAT
GATATCTGCCGTAACAATT-----------------AAGAGTGGGCCAGCAGTGTGTTAATGTGATTATATGGGAACATT
TCATCATAATATAAAATTCGAAACGGGAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACGGCTGC
ATTTGAAACATTAATTCTTGCACTGGAAGGTGTTCAATTTCTATTGTCATGTACTTCTCTGTTCTTGCATCCTCCAATTG
GTTTCCGCTTTTATTTTAC---TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCAATCGGTAAGCTTTTAAT
-CATTTTATAAATATAAAATGAAATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATA
CTGTTATATAAACATTGTTGGGTACATCACAGTATTGAGCAATTGGCCTATATCAGGCTATTACTTTGAATGAAACACAT
TTGTACTATATGACAATAACTAATTGGAAGATTGCAGTTTGTTAATGCACCTGCATATCCTCGAGGAATAAAATGTCCAA
TAAAAGTTGACATTTGAAAGTACCCCTTGTATTATAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAAC
AAATATAAGAGCATTTAGATCACTACTTTAGGAATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGC
AAGCATGTAAAAAACCGGGGAAAGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAACA
AACTTCGTAACTTGGTGCATGTCAGGCAAAGTCAGGATTTAGTTGTTATTTACAGAG-----------------------
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--------------------ATATTTTTTGTATTTGCTGCAGTATGTATGTACTGTACCAAGCAGGATTGCAAGTCAATC
TCACCTTAGGATATTATTCATACCTATTAGCAAGTCTACATGGATCATTTAATGTCGCAATTGTGTGCAGACACAAAACC
CTAGAAGTAGTTCAACCATTTTTCTCAAAGGCGTATTATTACATCTAAGGCAAAATCAATTGATTAGTTTTACTATTTCT
AATGTTCCTAAGTAGTGTTGAACCAT
>chr3A_2315
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----------------------------------------AAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAAT
TGTCTGTTCAAAAATTTTGTCATAGGTATTAATTACTACACTACATGTGCAGGCTAGTGTATGCTACTCACTTTAATGAT
GATATCTGCCGTAACAATT-----------------AAGAGTGGGCCAGGAGTGTGTTAATGTGATTATATGGGAACATT
TCATCATAATATGAAATTCGAAACGGTAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACGGCTGC
ATTTGAAACAATAATTCTTGCACTGGAAGGTGTTCAATTTCTATTGTCATGTACTTCTCTGTTCTTGCATCCTCCAATTG
GTTTCTGCTTTTATTTTAC---TTACCTGAAAAGATGAGACTGAATCCATAAGCAGTTGACCGATCGGTAAGCTTTTAAT
-CATTTTATAAATATAAAATGAAATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATA
CTGTTATATAAACATCGTTGGGTACATCACAGTATTGAGCAATTGGCCTATTTCAGGCTATTACTTTGAATGAAACACAT
TTGTACTATATGACAATAACTAATTGGAAGATTGCAGTTTGTTAATGCACCTGCATATCCTCGAGGAATAAAATGTCCAA
TAAAAGTTGACATTTGAAAGTACCCCTTGTATTATAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAAC
AAATATAAGAGCATTTAGATCACTACTTTAGGAATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGC
AAGCATGTAAAAAACCAGGGAAAGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAACA
AACTTCGGAACTTGGTGCATGTCAGGCAAAGTCAGGATTTAGTTGTTATTTACAGAG-----------------------
--------------------------------------------------------------------------------
--------------------ATATTTTTTGTATTTGCTGCAGTATGTATGTACTGTACCAAGCAGGATTGCAAGTCAATC
TCACCTTAGGATATTATTCATACCTATTAGCAAGTCTACATGGATCATTTAATGTCGCAATTGTGTGCAGACACAAAACC
CTAGAAGTAGTTCAACCATTTTTCTCAAAGGCGTATTATTACATCTAAGGCAAAATCAATTGATTAGTTTTACTATTTCT
AATGTTCCTAAGTAGTGTTGAACCAT
>SNPs
------S---S-------------------S-------------------------------------------------
------------SSS--------S-S-------------------S-----------------S----------------
------------------------------------------S------------S------------------------
-----------S--S------------------------------S----------S-----------------------
-----------------------S---------------------------S----------------------------
------------------------------------S---------------------------------------S---
----------------S---------------S------------------S------------S---S-----------
S-------------------------------------------S--------------S---S----------------
-----------------------------S---------------S--SS----S-S-S----S-SSS-SS---------
-------------------------------------SS----------------S--S-----------------S-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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-------------S----------------------------------S-----SS------------------------
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-------------------------------------------------------S------S----------------S
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-SSSSSSSSSSSSSSSSSSS-----S------------------------------------------------------
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-----------------------S--------------------------------------S-----------------
-------SSS------------------------S----------------------------------------S----
S--------------------------------------------------------------------S----------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------S---------------------------------------------------------SS---
-------------------S------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------S---------------------------------S----------------------
-------------------------------------------------S----S-------------------------
--------------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
--S-----------------------------------------------------------------S-----------
-----------------------------------------SS---S---------------------------------
-------------------SSS------------------------------SS--------------------------
S--------------------------------------------SS---------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------------------------S---------------
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-----S---------------------------S----------------------------------------------
----S---------------------S------S--------------------S-------------------------
------------SSSSS-------------------------S----------------------------------S--
-------------S------------------------------------------------------------------
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--------------------------
>forward_804
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----------------------------------------------------------------TCCGAGGAACTACTCC
CTCC----------------------------------------------------------------------------
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>reverse_3837
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----------------------------------------------------------------------------CGAA
GACCGTGGTGACTACA----------------------------------------------------------------
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>forward_806
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------------------------------------------------------------------CGAGGAACTACTCC
CTCCGT--------------------------------------------------------------------------
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>reverse_4614
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-----------------------------------------------------AAGTTGACCCATCGGTAAGCT------
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--------------------------
