>input_sequence_48207
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--------------ATGGGGGCTTTGAACCTCTTCCAAAACCTGCCGTCGAGCTTGAGCTGGGTCAAGCTCATCCACGGC
CAGGCGTGGCGTTTATCGGTCCGGAGAGCAGGGTGTGGCTCAGTCAGCACCGGTCACGTACGTAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ACGCACCATGCACCAGTACCACACATC
AGT---------GACGCCAGGGAGTTGCAAGAGGATAAGGCAATCGTATCCCCATGACTCCGTTTGCTACGGTACGCATG
CAGCTAGCACAGCCGGCCGAAGCTCTGCTCTCAGCTCGACAACAATGGCGAGAGCCTGCAAGTGCAGCCCCGCGGTGAGG
CTGCTGCCGTATCCGATCACAGCACAGCTGGCGGGCAGCAGGAGCCACGGA------AGATGCAGAAGCCTCGCCGTTCA
CGCGCAGCTCCCAACCGAGGATG------ATTACCCCGCCGAGTCACCGAAAAGGGTCCAGGTTACACAGGTGAATTGCT
GATCTACTGGTAGCCAGTGCTTGGAT-AACTCGTGGGTAGCAGTTTGAGTTTGAATGTCCATGAGCTGCTCACCGCATCA
TCTGCTTCGATCCAGAGCCTCAGGAGGAGGCGCCGGAGGGGGCCCGGCGCGCGGCAGAGCCTGGTGTCCGTCGGGACGTC
GCGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGAGCTGACGCTCCGGCAGCTGAGGCTGGACGACCTGATCGAGGAGG
GGCAGAGCGACGCCGACGTCCTGGTGCACCTTCTAGTCCAGCAGGTAACTGACAGAGAAAATA-----------------
--TGCACCGAGCAAGTGAGCAGCTGCCTGATAGCTGTGAGATGTTCGTCTGCTTTCAGCACACCCAGTTCGGAATGTCGA
TCAAAGGGCGAGTGGTCACATCGCTCACCAAAATATGCGATTCCTGCTCCGCCCCATACTGCACAAAGGTACACCACACT
GCTGATCAGCTGTAAAAAATTCCATGTTCAGAGAAAAGATGGCACATTTGGAAACTGTTCAAGTTAACTGAAAGCATTAG
ATCCTGGGACCCCGTTGCAGATTGATGAGCAGTTCGACATTACGGTGCTGTCTTCCTCCAGGAAAGACCAGAGCGGCTTG
CCTGAAATCGGAGACAGCGATCCGTCAGTACGTGATATGATTTACCTAGCTCTGATGCTATATGTAATTTACCGTAACCA
TTACGATTATTTCTTTTAGAGCAGGTCATGTATGTGAAGCCAGGAACAGAAATCGATATCGACTCGTCAATCCAAGAGAC
AATACGACTAACAGCGTCAGCCAAGGTATGCACTTGCAGCATGTCATGTCGAACTGTCGATTGTCGACAAACAAACCTC-
------TTACTGATTGTCATCATTCAGAGTTCATGTTCGGAGGCGTGTGAGAAGTCTCCTGTCGTGTGGAAACGGAAGGA
CTAAGACGAGCTGCAACAACTAGTACATTGGATTGGTTGCTTTTACTGTACATCGCTGTAACAGTTGTTCATCTTGTGAA
TTTGCAGGTGCTGGTAACCAGAAGAAGCGTTACAGCCAAACGTGGTCAAAACTTCTTGATCTCAAGAGAACTCTGGATAA
GGCGCACAGCTAA-------------------------------------------------------------------
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------------------
>chr2B_1_TraesCS2B01G393700
AAATTCCTCTATTATGTGTGTATTCTTGCATATGATAAGAAGACACGTTCTGTGTAAATTGTGTGCATATTTTTTCATTA
TTTGTTTTATTTTTTTATTTTATTTTTTCTTAAACGGTAATACTAATGATATTAATTCATTCTTTCTTAGAAACTTATTT
TTTTATTTTTATTTCTTCTTAAATGGTGATACAAAAACCACTAATTCATTCTTTTCTAGAAAACTCCATTA-TTTGATCT
TTTAAATGGTAGTACCAATG---------------------------------------------------------TTT
GTTTTTGCATACTATGAAAAAGCGCAATTTAGGTGCGAACTGTGTGCAA-TTTTTCATTATTATATGCTTATTTTTGTGT
ATATTATAAA--AGGCCCAATTTCTGTGTAAAATATGGGCGAATTTTTTTATTATTTGATTATTATTTTTCTGAAACGAG
TTTCTATCCAATC--TCTATATGCTTGGCTGAAACGATTTTGGGGTCAATCAACTGACCGAAAATTCATTTTGAACCGAC
TGACCTATAGCCGATCCCTTATAGATTGCTCTCACGTGGAAATGCCTGCCCTTCGGATGAGTGGATTTCCACGATACGGG
CAGTCTGCTGCACACGCCAGAAAAGTGATGATCTAGCGGTACGTCTGAAGGCCGAAAAGTAGAAAGGAAGACATGGAATC
CGATCGAGAGTAAGCGAGCGTCAACGATTCGAAGATACCAAAAGCAGAGTCGGCTGGTAGTGCGGAGCTTTGGAATGGTG
ATGTGAGCAGACGATGCCCACTGAACTGAT---------ACGACGATGAAGCTGCGTGCGTTTCCCATGTGTTTGCAGGC
ATGGAAGCTGGGATCCGGATTGTATATCCCGCTAG----CTCCCTCCTGTCTCGACGGCATTTGTTCGTGAATGGTCAGG
AA------------------------------------------------------------------------------
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--------------------------------------CCGGAGCAGAGACGGGCCCTGACT--CTCCTGACCGTGCATT
CCGTGCCCCCCACCATTTGAACGACATGTCCTGGTGGATGCTCA--------------------GAGCCGGATTGACCAT
ATCATCATGCAATCATGGGGGCTTTGAACCTCTTCCAAAACCTGCCGTCGAGCTTGAGCTGGGTCAAGCTCATCCACGGC
CAGGCGTGGCGTTTATCGGTCCGGAGAGCAGGGTGTGGCTCAGTCAGCACCGGTCACGTACGTAA---------------
--------------------------------------------------------------------------------
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-----------------------------------------------------ACGCACCATGCACCAGTACCACACATC
AGT---------GACGCCAGGGAGTTGCAAGAGGATAAGGCAATCGTATCCCCATGACTCCGTTTGCTACGGTACGCATG
CAGCTAGCACAGCCGGCCGAAGCTCTGCTCTCAGCTCGACAACAATGGCGAGAGCCTGCAAGTGCAGCCCCGCGGTGAGG
CTGCTGCCGTATCCGATCACAGCACAGCTGGCGGGCAGCAGGAGCCACGGA------AGATGCAGAAGCCTCGCCGTTCA
CGCGCAGCTCCCAACCGAGGATG------ATTACCCCGCCGAGTCACCGAAAAGGGTCCAGGTTACACAGGTGAATTGCT
GATCTACTGGTAGCCAGTGCTTGGAT-AACTCGTGGGTAGCAGTTTGAGTTTGAATGTCCATGAGCTGCTCACCGCATCA
TCTGCTTCGATCCAGAGCCTCAGGAGGAGGCGCCGGAGGGGGCCCGGCGCGCGGCAGAGCCTGGTGTCCGTCGGGACGTC
GCGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGAGCTGACGCTCCGGCAGCTGAGGCTGGACGACCTGATCGAGGAGG
GGCAGAGCGACGCCGACGTCCTGGTGCACCTTCTAGTCCAGCAGGTAACTGACAGAGAAAATA-----------------
--TGCACCGAGCAAGTGAGCAGCTGCCTGATAGCTGTGAGATGTTCGTCTGCTTTCAGCACACCCAGTTCGGAATGTCGA
TCAAAGGGCGAGTGGTCACATCGCTCACCAAAATATGCGATTCCTGCTCCGCCCCATACTGCACAAAGGTACACCACACT
GCTGATCAGCTGTAAAAAATTCCATGTTCAGAGAAAAGATGGCACATTTGGAAACTGTTCAAGTTAACTGAAAGCATTAG
ATCCTGGGACCCCGTTGCAGATTGATGAGCAGTTCGACATTACGGTGCTGTCTTCCTCCAGGAAAGACCAGAGCGGCTTG
CCTGAAATCGGAGACAGCGATCCGTCAGTACGTGATATGATTTACCTAGCTCTGATGCTATATGTAATTTACCGTAACCA
TTACGATTATTTCTTTTAGAGCAGGTCATGTATGTGAAGCCAGGAACAGAAATCGATATCGACTCGTCAATCCAAGAGAC
AATACGACTAACAGCGTCAGCCAAGGTATGCACTTGCAGCATGTCATGTCGAACTGTCGATTGTCGACAAACAAACCTC-
------TTACTGATTGTCATCATTCAGAGTTCATGTTCGGAGGCGTGTGAGAAGTCTCCTGTCGTGTGGAAACGGAAGGA
CTAAGACGAGCTGCAACAACTAGTACATTGGATTGGTTGCTTTTACTGTACATCGCTGTAACAGTTGTTCATCTTGTGAA
TTTGCAGGTGCTGGTAACCAGAAGAAGCGTTACAGCCAAACGTGGTCAAAACTTCTTGATCTCAAGAGAACTCTGGATAA
GGCGCACAGCTAA----ATTACTGTTGGCGATGCAGTTTCAACTCGATGCCA--CTGATTATCTGATATG--AATGCCAC
AGTGTGATATATCGAACAAAAAGCTCGTGTGACCGGATGATTAATCAACGGACATGGTTATCCAGTGATTGCTTCTCTCC
ATAATACTTTAG-TTAACTGTATACTCACAGAGACTACTGTACTAGACTATAACAAACCA--TTTTTTCTTTCCTCGAAT
ATATTTCCTGTGGGAAACTATGTATGAAATCAGAATATTCTTTTGAGGAATATATGAATTCAGAAGTCATTCCACAACTA
CGGCTTGTTTTTCAAGGCTACTGATTTTTCTTGCAAGGATTTACTCATACATGTTTCCGCTCACAAATTTCCTTTAGAAC
TGTTGAGTATCATGATTATTTAGGGCTGCCTCCACAGACAACCTCTGGTTCCGCCGACTACCTCTTCGTCTTCGTCCAGC
ACCAACTCATCGTCAGCGTCGTCGTCATTTTCCCCGACCACTTCATTTATTCCGACAACCGAGAACGCATCGGCACATTC
TACCCCGCCGATTGGCGCCGCAACCGTCGTCGACTCCTCCTCT--GTTGGT---------CCCTCCAACATGGCGTACAA
CTCGTGTTGGTCC--CGTCTACGCATGCCCGGAGCTGGCAACTACCGATGTGTGCCTTCGTCCACGACGTGTCCC-GGGG
CTTGGCAAACCTGGTGCGGCGCCTCGTCAATACCGACTTCTTCCCGTCTACGCATGCCCTGTGCTGCCAACACTGACACG
TGCCTTCGTCCACAACGTATCCCCAGGCTAGGCAACC-TGGTGTGGCGTCTCGTCAATACCAT-CTTCTTCGTGGCACAC
AACT--------------GCGCCCCTGACTACATGGTGCT-TCCTTGCGCCCGCATCTCCACGGTGACTACCTCGACACC
GACCAT-CCCCGACTCGACATCGATCACGGTATCCCTTGCACGGCTACCTTGATCA-TGACTAAACCACCCTACCCTCTC
AGCTACCTCGACAATGG-
>chr2A_85
TTTTAT--------------------------------------------------------------------------
-----------------------------------------------------------------------------TTT
TGTTTTCTTTCTTTCTTCTTAAATGGTAATACAAAAATCACTAATTCATTCTTTTCTAGAAAACTTCATTACTTTGATTT
TTTAAATGGTGGTACCAATGCCACTAATTCCTTCCTTTTTAGAAAACTTCATTTTGTGAAAACTCCACTATTATATGTTT
ATTTTTGCATACTATGATAAGGCGCAATTTAGGTGCAAACAATGCGCAATTTTTTCACTATTATATGCTTATTTTTGGGT
GTATTATAAAAAAGGCACAATTTCTGTGTAAAATATGTGCTAATTTTT-----ATTATATGATT-TTTTTCTGAAACGAG
CTTCTATCGCAATTTTCTATGTGCTTGACTGAAACTATTTTGGGATCAATCAACTGAAATTCAT----TTTGAG-CCGAT
TGAACTGTAGCCGATCCCTTATAGATTGCTCGCACATGGAAATGCCTGCCCTT-AGATTAGTGGATTTCCACGATACGGG
CAGTCTGCCGCACACGCCAGAAAAGTGGTGACCTAGCAGTATGTCTGAAGGCCCAAAAGTAGAAAGGAAGAAATGGAATC
CGATCGAGAGCGAGAGGGCATCAACAATTTGAAGATACCAAAAGCAGAGTCGGCTGGTAGTGCGGAGCACTGGAATGGTG
ATGCGAGCAGACGATGCCCACTGAACTAATATGACGACGACGGCAATGAAGCTGCGTGTGTTTTCCATGTGTTTGCAGGC
ATGT-------GATCCAGATCGTATATCCCGCT--------CCCTCCTGTCCCGACGGCATTTGTTCGTGAATGGTCAGG
AAT-----------------------------------------------------------------------------
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---------------------------------------CGGAGCAGAGACGGGCCCTGATAGACTCCTGACCGTGCATT
CCGTGCCCCCCAC-ATTTGAATGACATGCCCTGGTGGATACTCA--------------------GAG-------------
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>chr2D_381
AAATTTT-------------------------------------------------------------------------
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---------------------------------------------------TTATTATATGATTTTTTTTCTGAAACGAG
TTTCTATCTCAATTTA-TATGTGCTTGACTGAAACGATTTTGGGGTCAATCAACTGACCCAAAATTCATTTTAG-CCGAT
CGACCTGTAGCCCATCCCTTATAGATCGCTCTCACGTGGAAATGCCTGTCCTTCAGATTAGTGGATTTCCACGATACGGG
CAGTCTGCCGCACAGACCAGAAAAGTTATGATCTAGCAGCATGTCTGAAGGCCGAAAAGTAGAAAGGAAGAAATGGAATC
CGATCGAGAGTGAGAGGGCGTCAACGATTCGAAGATACCAAAAGCAGAGTCGGCTGGTAGTGCGGAGCTTTGGAATGGTG
ATGCGAGCAAACGATGCCCACTCAACTGACACCACGACGACGGCGATGAAGCTGCGTGTGTTTCCCATGTGTTTGCAGGC
ATGGAAGCTGGGATCCGGATCGTATATCCCGCTAGGGACCTCCCTCCTGTCTCGACGGCATTTGTTCGTGAATGGCCAGG
AGCCGTGGCGGATGCCCCGAAGTGGGCATTGGACAGAGTGGATAAGGGATGCCGTGCCTTCTTCTGGGTAGGCTCGGAGG
AAATTCAGGGAGGCCAATGTGCAGTGGCGTGGCGCCGGGTCTGCCGGCCTAAACAGATGGGAGGTCTAGGGGTGGTGGAT
CTATATAAACATGGAATCGCCCTAAGATTTAGGTGGGAGTGGTTGAAACGCACTGACAGCTCGCGACCTTGGCAGGGGCT
CAACTACTGTTCCGACAAACATGTCAGGTTGGCATTCGACAGCCTGGTCAAGTGGGAAGTAGGGGAAGGTTCGACGGCTT
TGTTCTGGAGAGATCGCTGGATCAGTGGATCCTGTGTGAAGGAGATCGCTCCGCTACTTGTTGGCAAAGTGCGGCAGCAG
GTGGTGAATAGGAGGAAAGTGAAGGACGCCTTGTATCTCCATGCGTGGACGCAAGATATCGTGGGAGAGATGAATACCGA
GAAGCTTTCGCAGTTCGTCAGGTTATGGGAGGTGCTGGTAGACATTGAGCTCACGCCTGGTTCGGAGGACACCCCGATCT
GGCAATGGGATGTAACTGGCAAGTACTCGGCAAAATCGGCGTACAAGATGATGTGTGAGGGAGGGGTCAGATTTCAATGC
GCCTCGGCTGTCTGGCGCAGTTGGGCCATGATGACCTGTAAGCTCTTCATTTGGCTCGCACTCCAGTACAGAGTGTGGAC
TTCGGACCGCAGACAGAGGCATGGTCTGCAAGATCATAGCTCGGCATGCTTCCTATATGACCAAGAAGAGGACAAAGTGG
ATCACATACTACTACAGTGTGTATATGCGAGACAAGTGTGGTTTCTGTGCTTCCGAGAGCTGGGCGTGGATGAAGCTTTG
ATTCCAACCACAGAGTATACACTAGGTGATTGGTGGGTATCCGCTAGAAAGCGCATTGACAAGAGACACCGGAGAGGATT
CGACACAATCTGCATTTCAGTCTGCTGGAACATATGGAAGCAGAGAAACGGCAGAGTTTTTCGCAACAGCAACATCGCCA
ACGAGTGGGGAACGGCCGATATCATCCACCAGGAACTTAGGCCATGGGCATCGGCGAGAGGGAGAGGAGTTCAACATGGT
ATAGAGTAGTAGCCTAGCGTGTGGAGTGGAGGGGTGGACGTGCATGCCGTGCCGTGTGTGGTAGTGCATTCCGTCGTCTG
TATTTCTTGTACATAACTCTTTTTCGTCTATAAAATTTTCTTGTACATAACTTTTTTTCGTCTATAAAGTTAAGGTACGC
ACTTTGCGTACCCATGAAAAAAAGTGAATGGTCAGGAGCCGGAGCAGAGACGGGCCCCAAAAAA----------------
-------------------AAAGAGATGTCCTGGTGGATGCAGAGAGAGAGAGAGCGCGCGCGCGAGCCAGATTGACCAT
ATCATCATGCAATCATGGGGGCTTTGAACCTCTTCCCAAACCTGTCGTC------GAGCTGGGTCAAGCTCATCCACGGC
CAGGCGTGGCGCTTATTGGTCCGGAGAGCGGGGCGTGGCTCAGTCAGCACCGGTCACGTACGTAA---------------
--------------------------------------------------------------------------------
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-----------------------------------------------------ACCCACCATGCACCAGCACCACACATC
ACG---------GACGCCAGGGAGTTGCAAGAGGATAAGGCAATCGTGTCCCCGTGACTCCATTTCCTACGGTACGCATG
CAGCTAGCACAGCCGGCCGAAGCTCTGCTCTCAGCTCGACAGCAATGGCGAGAGCCTGCAAGTGCAGCCCCGCCTTGAGG
CTGCTGCCGAACCCGATCACGGCACAGCTCCCGAGCGGCAGGAGCCACGGA------AGATGCAGATGCCTTGCCGTTCA
CGCGCAGCTCCCAGCCGAGGATGCCGATGATTACCCCGCTGAGTCACCCAAAAGGGTCCAGGTTACACAGGTGAATTACT
GATCTA------GCCAGTGGTAGGAT-AACTCGCGGGCAGCGGTTTGAATTTGAATGGCGATGAGCTGCTCACCGCATCA
TCTGCTTCGATCCAGAGCCTCAGGAGGAGCCGCCGGAGGGGAGCCGCCGGGCGGCAGAGCCTGATCTCCGTCGGGACGTC
GCGCGGCGGAGGAGATCAGTGGGGCAGCGACTTCGAGCTGACGCTCCGGCAGCTGAGGCTGGACGACCTGATCGAGGACG
GGCACAGCGACGCCGACGTCCTGGTGCACCTTCTGGTCCAGCAGGTAACTGAAAGAGGAACTGGCGTCCATCTGAAAAAT
ATTGCACCGAGCAAGTGAGCAGCTGACTGATAGGTGCGAGATCTTCGTCTGCTTTCAGCACACCCAGTTCGGAATGTCGA
TCAAAGGGCGAGTGGTCACATCGCTCACCAAAATATGTGATTCCTGCTCCGCCCCATACTGCACAAAGGTATATCACACC
GCGGATCACCTGGAAAAAATTTCATGTTCTAAGAAAAGATGGCACATTTGGAAACTGTTCAAGTTAACTGAAAACATTGG
ATCCTGGGACCCCGTTGCAGATTGATGAGCAGTTCGACATTACGGTGCTGTCTTCCTCCAGGAAAGATCAGAGCGGTTTG
CCTGAAATCGGAGACAGCGATCCGTCAGTACGTGATATCATTTACCTAGCTTTGATGCTATATATAAT-TACCCTAACCA
TTACGACTATTTCTTTTAGAACAGGTCATCTATGTGAAGCCAGGAACAGAAATCGATATCGACTCGTCAATCCAAGAGAC
GATACGACTAACAGCGTCAGCCAAGGTATGCACTTGCAGCATGTCATGTCGAACTGTCGACACACG--------ACCTC-
------TTACTGATTATTGTCATTCAGAGTTCATGTTCGGAGGCGTGTGAGAAGTCTCCTGTCGTGTGGAAACGTAAGTG
CTCAGACGAGCTGCAACAACTAGTACATTGGATTTGTTGCTTTTACTGTAGATCGCTGT--------TTTATCTTGTGAA
TTTGCAGGTGCTGGTAACCAGAAGAAGCGTTACAGCCAAACGTGGTCAAAACTTCTTGATCTCAAGAGAACTCTGGATAA
GGCGCCCAGCTAA----ATTACTGTTGCCGATGCAGTTTCAACTCGACGGCACTCTGATTATCTGATATGAAAATGCTAC
AGTGTGATATATCGAACAAAAAGCTCATGTGACCGGATGGTTAATCAATGGACATGGTTATCCAGTGATTGTTCCTCTCC
ATAA-----TAA-TTAACTGTATACTCATAGAGACTACTACG-----CTATAACAAAGCA---------TTTCCTCAAAT
ATATTACCTATGGGAAAATATGTATGGATTCAGAA---------------------------------------------
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>chr2A_1035
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------------------------------------------------CGAGCTTGAGCTGGGTCAAGCTCATCCACGGC
CAGGCGTGGCGTTTATCGGTCCGGAGAGCAGGGTGTGGCTCAGTCAGCACTATACATGGCCATGGGAAGTCCGGCCCGGC
CAGCCCGGCCCGACGCTGCTCCCGAGCCAGGCTTGGGCCTAGATTTTGAGCCTGATGGCCGGGCCAGGCCCGGGCCCGTC
GTTTTTGCACCATTCTAAAGGTTGGGCCGGGCCGGCCCGGAGCCCGACGGGCTTTTACATGTTCGGGCCGGGCTCGGGCC
TAAAAAATAGGCCCGATGGTCGGGCCGGGCCAGGCCCAGGCCTGTGTTTTTTGCGTCAGGCTTGGCTAGGCCCGGCCCGA
AGCCCGGCCCAGCCCGAGGTATGGCCAGGTATAGTCAGCACCGGTCACGAATTACCCACCATGCACCAGCACCACACATC
ACTGAGGAAACTGACGCCAGGGAGCTGCAAGAGGATAAGGCAATCGTGTCCCCGTGGCTCCGTTTCCTACGGTACGCATG
CAGCTAGCACATCCGGCCGAAGCTCTGCTCTCAGCTCGACAGCAATGGCGATAGCCTGCAAGTGCAGCCCCGCGGTGAGG
CTGCTGCCGAACCCGATCACGGCACAGCTCCCGGGCGGCAGGAGCCACGGAAGATGCAGATGCAGAAGCCTTGCCGTTCA
CGCGCAGCTCCCGACCGAGGATG------AGTACCCCGCTGAGTCACCGAAAAGGGTCCAGGTTACACAGGTGAATTACT
GATCTACTGATAGTCGGTCGTAGGATAAACTCGTGGGCTGCGGTTTGAACTTGAAAGGCCATCATCTGCTGCTTGCG---
--TGCTTCGATCCAGAGCCTCAGGAGGAGCCGCCGGAGGGGACCCGGCGCGCGGCAGAGCCTGATCTCCGTCGGGACGTC
GCGCGGCGGAGGGGATGAGTGGAGCAGCGACTTCGAGCTGACGCTCCGGCAGCTGAGGCTGGACGACCTGATCGAGGACG
GGCAGGGCGACGCCGACGTCCTGGTGCACCTTCTGGTCCAGCAGGTAACTGAAACAGAAAATA-----------------
--TGCACCGAGCAAGTGAGCAGCTGACTGATAGTTCTAAGATCTTCATCTGCTTACAGCACACCCAGTTCGGAATGTCGA
TCAAAGGGCGAGTGGTCACATCGCTCACCAAAATATGCGATTCCTGCTCCGCCCCATACTGCACAAAGGTACACCACACC
GCGGATCACCTGGAAAAATTTCCACTG-------AAAGATGGCGCATTTGGAAACTGTTCAAGTTAACTGAAAGCATTGG
ATCCTGGCACCCCGTTGCAGATTGATGAGCAATTCGACATCACGGTGCTGTCTTCCTCCAGGAAGGATCAGAGCGGGTTG
CCTGAAATCGGAGACAGCGATCCGTCAGTACGTGATATGATTTACCTAGCTCTGATGCTATATATAAT-TACCGTAACCA
TTACGACTATTTCTTTTAGAACAGGTCATCTACGTGAAGCCAGGAACAGAAATTGATATCGACTCGTCAATCCAGGAGAC
AATACGACTAACAGCGTCAGCCAAGGTTTGCACTTGCAGCATGTCATGTCGAACTGTCGACTGTCGACACACAACCTCTT
ACAGTTTTACTGATTATCATCATTCAGAGTTCATGTTCGGAGGCGTGTGAGAAGTCTCCTGTCGTGTGGAAACGTAAGTG
CTAAGACGAGCTGCAACAACTAGTACATTGGATTGGTTGCTTTTACTGTACATCGCTGTAACAGTTGTTTATCTTGTGAA
TTTACAGGTGCTGGTAACCAGAAGAAGCGGTACAGCCAAACGTGGTCAAAACTTCTTGATCTCAAGAGAAGTCTGGATAA
GGCGCCCAGCTAATTAAATTACTATTGGCGATGCAGTTTCAACTCGACGCCA--CTGATTATCTGATACGAAAATGCTAC
AGTGTGATATATCGAACAAAAAGCTTATGTGACCGGATGATTAATCAATTGACATGGTTATCCAGTGGTTGCTTCTCTCC
ATAA-----TACTTTAACTGTATACTCACAGAGACTACTGTACTAGACTATAACAAACCATTTTTTCTCTTTCCTCAAAT
ATATTTCCTGTGGGAAACTATGTATGAAATCAGAATATTCTTTTGAGGAATATATGAATTCACAACTCATTCCACAACTA
CGGCTTGTTTTTCAAGTCTACTGATTTTTCTTCCAAGGATTTACTCACCCATGCCCCCGCTCACA---------------
--------------------------------------------------------------------------------
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>chr2D_2990
CCGCCCGTCCACCTCCT---------------------------------------------------------------
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-----------------------------------------------------------------TCGTCTTCGTCCAGC
ACCAGCCCGTTGCCAGCGTCGCCGTCATCTACCCCGACCACTTCGTCTACTCCGACAACCGCAGGCGACATCGG-CC---
--CCACGCTGATTGACGCCGCAACCGTCGTCGAGTCCTTCTCT--GCTGGACTCTCTGACTTCTCCGACATGGCGTACAA
CTTGTGCAGGTCCT-CGTCTATGCATGGTCGGTGCTGGCAAC-ACCGATGTGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCGCTTCGTCAACTTCGTCTTCAT-CCGTCTACGCATGCCCGGTGCTGGCAACACCGGTGTG
TGCCTTCATCTACGATGTGTCCCCGGGCTTGGCAAACCCGCCGCGACGCATCGTCAACAACAT-CTTCTTCCCGGCGCAC
CACTACTTCGACACCAATGCGCCCCTG-CTAACTCGGCGCCTCCTTGCACCCGCGGCTCCATGGCGACATCCTCGACACC
GGC--T-CCCCAACTCGACATCGACCACGACATTTTTCGCACGGCTACCTCGACCA-CGGCTCCACCACCC-ACGCTCTC
GGCTACATCGACAA----
>chrUn_2990
CCGCCCGTCCACCCCGT---------------------------------------------------------------
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-----------------------------------------------------------------TCGTCTTCATCCAGC
ACCAGCCCGTCGCCAGCATCGTCGTCATCTACCCCGACCGCTTCATCTACTCCGACAACCGCGTGCGACATTGG-CC---
--CCCCGCCGATTGGCGCCGCAACCGTCGTCGAGTCCTTCTCT--GCTGGCCT-TCCGACTTCTTCGACATGGCATACAG
CTTGTGCAGGTCCC-AGTCTACGCATGCCCGGTGCTGGCAAC-ACCGCCGTGTGCCTTCGTCCACGACGTGTCCC-GGGC
C-CGGCAAGCCTGGCGCGGCGCTTCGTCAACTTCGTCTTCGT-CCGTCTACACATGCCCGGTGCTGGCAACACCGACGCG
TGCCTTCGTCTACGATGTGTCCCCAGGGTTGGCAACCCCGGCGCGACGCGTCGTCAACATCAT-CTCCGTCCTGGCGCAC
CACTACTTCGACACCACTGCGCCCACGACTAACTCGGCGCCCCCTTGCGCCCGCGGCTCCACGACGACTTTCTCGACACC
GGC--CACCCCGACTCGACATCGACCACGACATTCTTCGCACGGCTACCTCGACCAGCGGCTCCACCATAC-ACGCTCTC
GGCTACATCGACAA----
>chr4D_2999
A-----------CCCCT---------------------------------------------------------------
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-----------------------------------------------------------------TCGTCTTCGTCCAGC
ATCAGCCCGTCGCCCGTGTCGCCGTCATCTACCCGGACCGCTTCATCTACTCCGAAAACCGTGGGCGACATTGG-CC---
--CCGCGCCGATTGGCGCCGCAACCGTCGTCGAGTCCTTCTCT--GCTGGCCTCTCCGACTTCTTCGACATGGCGTACAG
CTCGTGCAGGTCCC-AGTCTACGCATGCCCGGTGCTGGCAAC-ACTGCCGCGTGCCTTCGTCCATGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCGCTTCGTCAACTTCGTCTTCGT-CCGTCTACGCATGCCTAGTGCTGGCAACACCGGTGCG
TGCCGTCGTCCACGATGTGTCCC-GGGCTTGGCAAACCCGCTGCGACGCGTCGTCAACAACAT-CTTCTTCCCGGCGCAC
CACTACTTCGACAACACTGCGCCCATG-CTAACTCGGCGCCCCCTTGCGCCTGCGGCTCCACGGCGACTTCCTCGACACC
GGC--CACCCCGACTCGACATCGACCACGGCATTCTTCGCATGGCTACCTCGACAA-CGGCTCCACCACCA-ACGCTCTC
GGCTACCTCGAC------
>chr2B_3000
-----------CCTCCT---------------------------------------------------------------
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-----------------------------------------------------------------TCATCTTCGTCCAGC
ACCAGCCCGTCGCCAGCGTTGCCGTCATCTACCCCGACCACTTCGTCTACTCTGGCCACCGATGGCGACATCGG-CC---
--CCGCGCCGATTGGCGCCGCAACCGTCGTCGAGTCTTCTTCTCTGCTGGCCC-TCCGA-CTCCTCGACATGGCGTACAG
CTCGTGCAGGTCCCTCGCCTACGCATGCCCGATGCTGGCAAC-ACCAATGTGTGCCTTCGTCCACGACGTGTCCCTGGGC
C-TGGCAAGCCTGGTGCGACGCTTCGTCAACTTCGTCTTCGT-CCGTCTACTCATGCCCGGTGCTTGCAACATCGCTGCG
TGCCTTCGTCCATGATGTGTCCCCGGGCTTGGCAAACCTGGCGCGACACGTCGTCAACAATGT-CTTCTTCCCGGCGCAC
CCCTACTTCGACACCACTGCGCCCATG-CTAACTCGGCGCCTCCTTGCGCCCGCGGCTCCATGGCGACTTCGTCGACACC
GGC--TACCCCGACTCCACATCGACCACGGCGTTCTTCGCACGGCTACTTCAACCA-CGGCTACACCACCGTACGCTCTC
GGCTACTTTGACAA----
>chr5D_3000
CCC-----------------------------------------------------------------------------
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---------------------------------------------------------------CTTCGTCTTCGTCCAAC
ACCAGCCAGTCGCCAGCGTCGCCGTCATCTACCCCGACCACTTCATCTACACCGACAACCGCGGGCAACATTGG-CC---
--ATGCGCCGATTGGCGCCGCAACCATCGTCGAGTCCTTCTCT--GCTGGCCCCTCCGACTTCTCCTACGTGGCATACAG
CTCGTGCAGGTCCC-AGTCTATGCATGTCCGATGCTGGCAAC-ACCGATGTGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCGCTTCGTCAACTTCTTCTTCGT-CCGTCTACTCATGCCCGGTGCTGGCAACACCGACGCG
TGCCTTTGTCTACGACGTGTCTCCGGGTTTGGCAAACCCGGCGCGACGCTTCATCAACACCGT-CTTCTTCCCGGCGCAC
CACTACTTCGACACCACGGCGCCCATGACTAACTCAGCCCCTCCTTGCGCCCGCGGCTCCATGGCGACTTCCTCAACACC
GGC--CACCCCGACTCGACATCGACCATGACATTCTTCGCACGGCTACCTCGACCA-CGGCTACACCACCCTCCGCTCTC
GGCTACCTCGACCAATGG
>chr5D_3003
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---------------------------------------------------------------CTTCGTCTTCGTCCAGC
ACCAGCTCGTCGCCAGCGTCGCCGTCATCTACCCCGACCGCTTCATCTACTCCGACAACCGTGGGCGACATTGG-CC---
--CCGCGCCGATTGGCGCCGCAACCGTCGTCGAGTCCTTCTCT--GCTGGCCTCTCCGACCTCTTCAACATGGCGTACAG
CTCGTGCAGGTCCC-AGTCTACGCATGCCCGGTGCTGGCAAC-ACCGCCGAGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCGCTTCGTCAACTTCGTCTTCGA-CCGTCTACGCATGCCCGGTGCTGGCAACACCGACGCG
TGCCTTCGTCTACGATGTGTCCCCGGGGTTGGCAAACCCGACGCGACGCGTCGTCAACACCATTCTCCTTTCTGGCGCAT
CACTTCTTCGACACCACTGCGCCCATGACTAACTCGGCGCCTCCTTGCGCCTGCGGCTCCACGGCGACTCCCTCGACACC
GGC--TACCCCGACTCGACATCGACCACGGTGTTCTTCGCACGGCTACCTCGACCA-CGGCTACACCACCCTACGCTCTC
GGCTACATCGACA-----
>chr6D_3003
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---------------------------------------------------------------CTTCTTCTTCGTCCAGC
ACCAGCTCGTCGCCAGCGTCGTCGTCATCTACCCCGACCGCTTCATCTACTCCGACAACCGTCGGCGACATTGG-CC---
--CCACGCCGATTGGCGCCGCAACCGTCGTCGAGTCCTTCTCT--GCTGGCCTCTCCGACCTCTTCGACATGGAGCACAG
CTCGTGCAGGTCCC-AGTCTACGCATGCCCGGTGCTGGCAAC-ACCGACGCGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCGCTTCGTCAACTTCGTCTTCGA-CCGTCTACGCATGCCCGGTGATGGCAACACCGACGCG
TGCCTTCGTCTACGATGTGTCCCCGGGTTTGGCAACCCCGTCGCGACGCCTCGTCAACACCGT-CTTCTCCTCGGCGCAC
CACTATTTCGACACCATTGCGCCCATG-CTAACTCGGCGCCCCCTTGCGCCCGCGGCTCCATGGCGACGTCCTCGACACC
GGC--T-GCCCGACTCGACATCGACAACGACATTCTTCGCACGGCTACCTCGACCA-CGGCTACACCACCCTCCGCTCTC
GGCTTCATCGACAA----
>chr3A_3003
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---------------------------------------------------------------CTTTGTCTTCGTTCAGC
ACCAGCCCGTCGCCAACATCGCCGTCATCTACCTTGACCGCTTCATCTACTCCAACAACCGCGGGCGACATTGG-CC---
--TCACGCTGATTAGCGCCGCAATCGTCGTCAAGTCCTCT-CT--GTTGGCCTCTCCGACTTCTTCGACATGGCGTACAG
CTCGTGCAGGTCCC-AGTCTACGCATGCCCGATGCTGGCAAC-ACCGATGTGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAGCCTGGTGCGGCACTTCGTGAACTTCGTCTTCGT-CCGTCTACGCATGCCCGGTGCTGGCAACACCGGTGCG
TGCCTTCGTCTACGATGTGTCCCCGGGTTTGGCAAACCTGCTGCGACGCGCCGTCAACAACAT-CTCCTTACCGGCACAC
CACTACTTCGACACCACTGCGCCCATG-CTAACTTGGCGCCCCCTTGCGCCCGCGGCTCCATGCCGACTTCCTCGACACC
GGC--CACCCCGACTCGACATCGACCACGACATTCTTCACACGGCTACCTCGACCA-CGGCTCCACCACCC-ACGCTCTC
GGCTACATCGACAA----
>chr7B_3003
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---------------------------------------------------------------CTTCATCTTCGTCTAGC
ACCAGCCAGTCGCCAGCATCGCTGTCATCTACCCCGACCACTTCGTCTACTCCGACCACCATTGGTGACATCGGCCC---
--CCATGCCGATTGGCGCCACAACCGTCGTCGAGTCTTCTTCTCTGGTGGCCC-TCCGA-CTCCTCGACATGGCATACAG
CTCGTGCAGGTCGCTCGTCTCCGCATGCCTGGTGCTGGCAAC-ACCGATGTGTGCCTTCGTCCACGACGTGTCCCCGGGC
C-TGGCAAACCTGGT-CGGCGCTTCGTTAGCTTCGTCTTCGT-CCGTCTATGCATGCCCGATGCTGACAATACCGATGCG
TGCCTTCGTCCATGATATGCCCCCGGGCTTGGCAAACCCAGCGTGATGTGTTGTAAACAACAT-ATTCTTTCTAGTGCAC
CACTACTTCGACACCACTGCGCCCATGACTAACTCGGCGCATCCTTGCGCCCGCGGCTCCACGACGACTACCTCGACACC
GGC--TACCCTGACTCGACATCGATAATGGTGTTCTTTGCACAGCTACCTCGACCA-CGGTTACACCATCCTACGCTCTC
GGCTACTTCGACAAATGG
>SNPs
------S--S-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-S--S-S---S----------------S---------S---------------------------S------------S-
----------S---------------------------------------------------------------------
S----------------S--S---------------S---SS--S------------S-------------------S--
S---------------S--------------------S--S-------SSS-----SS--S---S---------------
--------SS-SS-------S------S-------------------------------S------------SSS----S
------S-----------------------------------------------S---S---------------------
--------S----------------------------S---S-----------------------------S--------
-----------S--S-S---------------------------------------------------------------
---S--------------------------------------S---------------S---------------------
--------------------S-----------------------------------------------------------
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------------------------------------------------------------SS------------------
-------------S-------S-----------------------------------------------S----------
------------------------------------S-------S-----------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------S-------------S----------
-S---------------------------------------------S-----S-----------S--------------
-----------------------------------------S--------------------------------------
---------S-S--------S--------SS-----S----------------------------------S--------
---------------------------------------S-------------------------------------S--
---------S---------S-S---------------S---S------S--------S----------------------
-----------------------------S-----------S---------------------S-S--------------
------------------------------------------------------------------------------S-
----------------------------------S-----------------S---------------------------
-------------------------S-------S--------S-------------------------------------
-------------------------------------------------------------------------------S
--S-----S---S----------------SS-----------------------------------------------S-
-------------------------------------------------------------------S--------S---
---------------------------------------------------------------S----S-----------
------S-------------S--------S--------------------------------------------------
------------------------------------------------------------S--------S----------
---------------S----------------------------------------------------------S---SS
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----S-----------------------------------------S-----------------------------S--
--------------------------S---------------------S-------------------------------
----SSSSS--S------------------------------------------------------S---------S---
--------------------------------------------------------------S--S--------------
----------------S---------------S--------------SS----SSS---------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
----S---S---S---------------S-S---------------S--S-------------SS--SSSSS-SS-SSSS
SS-------------------------------S----------------S----------S------------------
------SS------------------------S---------S------------------------------------S
-S--------------------S-------SSS--S----S-S----------------S------S------S---S--
-------------S----S----------S---------------S-----------S-------------S--------
S------------------------------SS-S-SS-S--------------SS--------S---------------
-S-SS----------------------------S-S--------------S--S---S-S---S----------S-----
S-------------SS--
>forward_901
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-TGGAAGCTGGGATCCGGATT-----------------------------------------------------------
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>reverse_4155
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--------------------------------------------------------------------------GAAGGA
CTAAGACGAGCTGCA-----------------------------------------------------------------
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------------------
>forward_3112
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----------------------------------------------------ACGGAAGATGCAGAAGCCTC--------
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>reverse_4783
--------------------------------------------------------------------------------
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--------------------------------------------------------------TCTTCGTCTTCGTCCAGC
AC------------------------------------------------------------------------------
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------------------
