>input_sequence_48166
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----------------------------------GCTGAGCCATTGGCCATTGCTGCCGATCGCTTCCAGCTTCCAGGCT
TGTA-------GCTAGCTGCTAGCTGGTGGTTCGCCCGTTGCCGGTCCCATGAGCAAGAGGCCGGTGGACGCGGGCGGCG
AGCGGCCGCCGAGCCGTGGCCGCGCGGCGCCGCGGTCGGCTCGCCACCACGGTGCGACCGCGCAGAGGGAGGCGGAGGCG
GCGGCGGCCGCCGCGGCGGTGGCGGCCGCGCTGCGCGACGATGCTGCCGTGAGCAGCAGGGCGGCCATGGCGGCTCGCCC
CAGGCGTGGGCCCAACGAGTACGTCTCCTACCGCCAGCCCGGACCGAGCGAGGCGTCGATGCATCACCATCCCGGCGACG
AGCGCTTCCCCGGCGGGCCGAGCCACGGCGACGGCGAAATCCAGGAGGTTGACGA---------GCCGGCGCAGCCGCCC
CGCGGCGGCGGCGGGCCCTACTACATGGCGCCGTGGCAGAGGCGGGGCCGCCCGCCGCCGCAGCCGCTGCCGCCGGTGGC
GGTCGACGAGCCGCGGTACCGGTACGAGCGCGTCCCGGGGGAGCAGAGGATGAGGATCCCGGGGCCGGTCCAGGCGCCGC
CGATGGGCCCGCGCCCGACCGGCAACGGCGGCTACCGGACCAACACCACGAGGGTCGAGCGCGTCACAACGATCAAGCAA
GACGA---CGGCGGCGCGCCTTACCAACCGGGCGCGCCGGTGCCGGGGAACGGGAGCCCACAGCAGCAGCAGCAGCAGCA
GCACCATGATCACCAGGGGTCGACG-TCGCACACGCCGCCGGGACGTCACCGCCATCCGCGGACACCGAGGAGGACCCCG
GC-AGGCTCTCCGGGGGGCTACGTCTCGCCGGACCGCGGCAGGGAGAAGCGCAGGCAGCTGCCGGCCTTCTGCTTCACCC
TCTGCTGCATCCTGTTCTGGCTGGCGGTGGTGGTCGTCGGCGTGGCCGTGCTCACCGTGTACCTCTACTACCGCCCGCAG
CCGCCGAAGCTCCGGGTGACCGACGCGTCCCTGAACGCCGGGTACGTGGACGAGCTGACCGTCCCCGGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCCGACCTCACCGTGCTGGTCGCCATCACGAGCCCCAACACAAGGGTGAAGATGGTCCTCTGGT
ACATGCAGCTGGACCTGTACTTCGAGGGCCACAGGATCGGCACTTCGACGGTGCTGCCGGCGCCGCTGTTCGAGGAGCCC
CGCACCTACGCGCTCCGGACCGTGGACTTCGTCGTCAGCGAGGCGCCACTGTCGCGGGAGGACGCCATCGCGTGGAGGAA
CGGGACGGTGGCGGGCGGGCCCGTGAAGCTCAAGCTCGTCGGGAAGTTCCACACGCAGCTCAACTTCGGGCGGTGGCTGC
CGTACAAGTACTGGGTGTACCCGCGCTGCACCCTCTGGATGGACCCGCCGCCCAACGGCGGGCTGGTTCGGGCACGCTGC
TGATGGTTTCCTGAGGAGTTGCACAAACAACCGCTAACAGGCTTCTGAACAATTTCCTTTTCATGTAGTAGTAGTTATTT
TACTGTTGAAGATTTACCTG------------------------------------------------------------
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------------------------------------------------------------
>chr3D_1_TraesCS3D01G410200
TTGTCGTGGTTTTTGTTCAACAGTTTTGCTAAAGCACATCTAGATGTGCCATAAGTATTGCACATCTAAGTCTCATGTCA
TTGATCTTACGTGGAGATTCGTGTGAGTTCCTTTTGCTTTTTCTTTTTCTTTCCATACTTGATTGTGTCATTTAGATGTG
CAATATTTATGACACATCTAGATGTGCCATAGACAAATAGTTCAATATAGAAATCATG----------------------
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--------AAAAATAAGCACTCCAAATCATGAAGTGAATTAT------CGTCATCGCTGATCATTTGATCTGTCTGAATG
--------ACAGACACACTCGGATCCCTTCCACGTTCCCGCGGTGGCCGCGGCGCACGGCGCTGGGAGGGAATCCGCGGT
CGTGGGGATGGAAG----ACCGAGCATCTCATCTCCGGGCCATACCTTGCGTGGGCCTGGAGCCGCAGGCATCGTCC---
----TCTTCACAGCGAGCACCGGAGATCCTGAACACGAGCGCTCCCATTTAAAATGGCATCACATCACTCAGACGTTCAG
AAAGAAGGCTCGCCGGAGAAAACAAACCAAAAGAAAGCCCAGCTCCCATTGTTCATCTCTGTCCAGTTTTTCCCATGGCG
CTTTCCATCAAGATTGTTTTG--------TCGAGCACCTGTGCCGCGCCCCGAGTCCCT--GAAAAACCCACGACAGAGA
GCGCTTTCGATCAGGTTTTACAAGCATGCGCTTTTGAGCACCGTCCGGGG-------AAGTAGCCACCGGCAAGCAAAGC
TCTGTTGCCACGGCAACCGGAAATTCCCTCTGCCAGTCGCCGTGCGCCTAGCTGCCAGCTTCCGGTGCCATGGCTAAGTT
GCTTGCTCAAGACGGCTACAGTACAGATCGAACGATACCTTCCTTGCCCCCTTTCCCTCCAAAAATTCCTCCTCCGTCCT
CCTCCTCTTCTCCCGAGCGCCTCTGTCCGTGCCTGCCGGTGCTGTGCCGTGGCCACGTTGCTTGCCCCGGTTACTTAACC
CCG-GCCCG-CCCCACTCTGCAGTGCCACGTCGCGCTGAGCCATTGGCCATTGCTGCCGATCGCTTCCAGCTTCCAGGCT
TGTA-------GCTAGCTGCTAGCTGGTGGTTCGCCCGTTGCCGGTCCCATGAGCAAGAGGCCGGTGGACGCGGGCGGCG
AGCGGCCGCCGAGCCGTGGCCGCGCGGCGCCGCGGTCGGCTCGCCACCACGGTGCGACCGCGCAGAGGGAGGCGGAGGCG
GCGGCGGCCGCCGCGGCGGTGGCGGCCGCGCTGCGCGACGATGCTGCCGTGAGCAGCAGGGCGGCCATGGCGGCTCGCCC
CAGGCGTGGGCCCAACGAGTACGTCTCCTACCGCCAGCCCGGACCGAGCGAGGCGTCGATGCATCACCATCCCGGCGACG
AGCGCTTCCCCGGCGGGCCGAGCCACGGCGACGGCGAAATCCAGGAGGTTGACGA---------GCCGGCGCAGCCGCCC
CGCGGCGGCGGCGGGCCCTACTACATGGCGCCGTGGCAGAGGCGGGGCCGCCCGCCGCCGCAGCCGCTGCCGCCGGTGGC
GGTCGACGAGCCGCGGTACCGGTACGAGCGCGTCCCGGGGGAGCAGAGGATGAGGATCCCGGGGCCGGTCCAGGCGCCGC
CGATGGGCCCGCGCCCGACCGGCAACGGCGGCTACCGGACCAACACCACGAGGGTCGAGCGCGTCACAACGATCAAGCAA
GACGA---CGGCGGCGCGCCTTACCAACCGGGCGCGCCGGTGCCGGGGAACGGGAGCCCACAGCAGCAGCAGCAGCAGCA
GCACCATGATCACCAGGGGTCGACG-TCGCACACGCCGCCGGGACGTCACCGCCATCCGCGGACACCGAGGAGGACCCCG
GC-AGGCTCTCCGGGGGGCTACGTCTCGCCGGACCGCGGCAGGGAGAAGCGCAGGCAGCTGCCGGCCTTCTGCTTCACCC
TCTGCTGCATCCTGTTCTGGCTGGCGGTGGTGGTCGTCGGCGTGGCCGTGCTCACCGTGTACCTCTACTACCGCCCGCAG
CCGCCGAAGCTCCGGGTGACCGACGCGTCCCTGAACGCCGGGTACGTGGACGAGCTGACCGTCCCCGGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCCGACCTCACCGTGCTGGTCGCCATCACGAGCCCCAACACAAGGGTGAAGATGGTCCTCTGGT
ACATGCAGCTGGACCTGTACTTCGAGGGCCACAGGATCGGCACTTCGACGGTGCTGCCGGCGCCGCTGTTCGAGGAGCCC
CGCACCTACGCGCTCCGGACCGTGGACTTCGTCGTCAGCGAGGCGCCACTGTCGCGGGAGGACGCCATCGCGTGGAGGAA
CGGGACGGTGGCGGGCGGGCCCGTGAAGCTCAAGCTCGTCGGGAAGTTCCACACGCAGCTCAACTTCGGGCGGTGGCTGC
CGTACAAGTACTGGGTGTACCCGCGCTGCACCCTCTGGATGGACCCGCCGCCCAACGGCGGGCTGGTTCGGGCACGCTGC
TGATGGTTTCCTGAGGAGTTGCACAAACAACCGCTAACAGGCTTCTGAACAATTTCCTTTTCATGTAGTAGTAGTTATTT
TACTGTTGAAGATTTACCTGCAACTACGATACTTAGCATATTTTCTAGAGAGGGAATGCTGCAGATCTTGCTTAACCAAA
ACAACTGGCCTAACGCTGAGATTAGCCTACTAGGGATGCAAAAATGTATTCAGTCTGTACAAAAGCTAAAATGTACACAA
GTTGCTGGATAATTGTGCTTGGTTTAACTATATTTTGTCCATGTACTGATGTCATCAGAAACCTTTGATTCCTTGAAAAC
AAACTTAACTTCCACCGAGTATAGAAAGCAGTCAAGGTCAAAGTGCATGCTTCTTTGTGTATTTGATCAAAGGTGCGTGG
GCAAGTGACACAACTCGCTTATTTTTGAAGAGACTTCTTTTGCAAGTCTTAACAAGTCGAACTGTTAATACTTATGATGC
AAGGGCGGTGTTTTTTCCCTGAAAAATTGAAAGGAGCTCGGGATGATGATTTTGAAAGAACAAGAAACCCAAGATTGCAC
AAGTGACGCAGGAAGATATTAGAAAGATTAGTTCCATTGTCAATGCTTCACACACATCATTTTAGTCTTTCCTAAAGCAA
GAAGAGACCGCCTCTGTCACCTCTAGCATGGATTTAGTTTGTGCTTGTGGCGCAATAGAAGGCAACGATGAGCACTTCAT
TGCTACCGAGTTCTTTGTGAAGAGAGAGCAACGAGAGATGTTCTTGCACATGACTAGTGAGTCTCAGAAAAAGTTCTTGT
TGGCATTGGGAGGTTGCGAATCAAATAGAAGAACCCACAACTGCTTCAAACATTCAGCAAATACAATCCATCATAAATTT
CATGAGGTTGTACAATGTGTGGTCATCATGGCATCTCATTTCCTTGAGCCACAAGACCCAAATTTCCACACTGTGCATGA
TAGTATTAAGAAAGATAGAAGGGCTTATCCTCATCTCAAGGGCTGCATTGGTGCAATCGATGGGAATCATATAAGAGCTT
CTATTCCTGAAGGGCCGCTGAAAGTGAGGTACATAGGGAGAACATGTGTGACAACTCAAA
>chr3B_209
GGGATCGAAGACCGAGCATCTCGTCCCCGGGCCATACCTTGCGTGGGCCTGCAGGCATCGTCGTCACAGCAGCAGAGAAC
CTGAACCCGAGCCACGCACAACGCTCCCATTTAAAGTGGCATCACATCATTCAGACATTCAGAAAGAAACTTCACCAAAT
AAAACAACCAAAAGAAGCTCAGCTCAGTTCCAATTGTTCATCTCTGTTCAATTTTCCCGATGCCACTTTCCTGACAGATT
GTTTTGTCGAGCACCTGTGCCGCGTCCCGAGTCTCAGAAAAACCCACGACAGGGAGCGCTTTCGAGCAGGTTTTACAAGC
AAGCGCTTTTGAGCACCATCCCGGGAAGTAGCAACCGGCAAGCAAGCCACCGTGTGCCACGGCAACCGGAAATTCCTTTC
CAAATCAGCTTTTGCCAGTGGCCGTGCGCCTAGCTGCCAGTGTCTCTGACATGGCTAAGTTGCTTGCTTGCTTGCAACGG
TTACAGATCAAATGATACCTTCCTTGCGGGACAGATGCAACCATGGAGCCCGTTTTTCTTAAAAAAAAATAATCAAAAAT
CATATTTAAAAGTTTTATTTTTTTTTGAAAAGGTCCATGGAAGCTTATATTCCGTAAAAACGTGTAAAAAATTGTTTGAA
AATATTGTGATTTGTATGCTGTCCCAAAAACGAAAATTTGGCCCAACAAAAAAAATGCCGGCCCATTTTTTTGTCTTTTT
TTTGCACGCAACGTGTGAAAGTATAATGTGATGTGCCCCCGCAAAAAAAATGTATAGTGTGATGTGGGCTGTCACCCAAA
AATGAACCAAACATTAGTGTGAGAATGCAGTACATAACAATGAAAAAGTGAAGTTCATCAAGTGTAGCATGCATAAGACA
TTGCTGCAAAATACAGATGTAGTAGATGTAGTCATGTAGATGTAGTAGAGAAGAGGTCATCAGAGCGTATTCACAAGAAA
AATGGTTTGTAGATTTCATCAGGGAAACGCTGATGATAGCTGATTTTGATTTGGACGCTGCGTTGAGAATTGTGAATCAT
GGAAAGTTTCAATATTGACTTTTATCTTTTTAGCAAAATAGGGGCTGTGCCCCTGATTCCATTTCAGGAATTAAACTATA
TACAGTATGTTACATCGTTATGACAATGCAAGGTTTTTTGTCCTGCGTCAGTAGCTCTCATGAAGGTTTATAACAGGGAA
ACCTATTTTGGTTACACACCCAGAGAAGGATTTAGAGGGTTTCACAAAAAAAAAAAGAGAGAGAAGGATCTAGAGGGAAT
GGGTTCAAAATCGATTTTAAAAGAGACTATATAATGGGTAGAGAGTGTGTTACTCCTATCCAAACTCCTAACATCAGAAA
ACATTAGAAATAATAAGCACTCCAAATCATGAACTGAATTATGGCCATCGTCCTCGCTGATCATTTGATCTATCTGAACG
TAACAGTAACAGACACACTCGGATCCCTTCCATGTTCCCGCGGTGGCCGGCCAGCCGGT-----------------CGGT
CGTTGGGATCGAAG----ACCGAGCATCTCATCTCCGGGCCATACGTTGCGTGGGCCTA------CAGCCATCGTCC---
----TCTTCACGGAAGCACCAGAGAGAACCT---------GAACCCGTTTAAAACGACATCACGTCA--------TTCAG
AAAGACGACTCGCCTGAGAAAACAAACCAAAAGAAGCTCAGCTCCCGTC-GTTCATCTCTGCCCAAATTTTCCCATGCCA
CTTTCCATCA-GATTGTTTTTTGTCGAGCTCGAGCACCTGTGCCGCGTCTCTCGGGTCCCAGAAAAACTCACGACATAGA
GCGCTTTCGAGCAGGTTTTAC----AAGCGCTTTTGAGCATCGTCCCTGGAGGTGGCAAGTAGCTACCGGCAAGCAAAGC
TCTGGTGCCACGGCAACCGGAAATTCCCTCTGCCGGTCGCCGTGCGCCTAGCTGCCAGTGTCCTGTGCCATGGCTAAGTT
GCTTGCTCGCAACGGCTACAGTACAGATCAAACGATACCTTCCTTGCCCCCTTTCCCTCCAAAAATTCCTCCTCCGTCCT
CCTCCTCTTCTCCCGAGCGCCTCTGTCTGTGCCTGCCGGTGATGTGCCGTGGCCACGTTGCTTGCCCCGGTTACTTAACC
CCG-GCCCGCCCCCACTCTGCAGTGCCACGTCGCGCTGAGCCATTGGCCATTGCTGCTGATCGCTTCCAGCTTCCAGGCT
TGTA-------GC-------CAGCTGGTGCTTCTCCCGTTGCCGGCCCCATGAGCAAGAGGCCGGTGGAGGCGGGCGGCG
AGCGGCCGCCGAGCCGTGGCCGCGCGGCGCCGCGGTCGGCTCGCCACCACGGCGCGGGCGCGCAGAGGGAGGCTGAGGCG
GCGGCGGTGGCAGCG------------GCGCTGCGCGACGATGCTGCCGTGAGCAGCAGGGCGGCGATGGCGGCTCGCCC
GAGGCGTGGGCCCAACGAGTACGTCTCCTACCGCCAGCCCGGCGCGAGCGAGGCGTCGATGCATCATCATCCTGGCGACG
AGCGCTTCCCCGGCGGGCCGAGCCACGGCG------AAATCCAGGACGTCGACGAGCCGGAGGCGCCGGCGCAACCGCCC
GGCGGCGGGCGCGGGCCCTACTACATGGCGCCGTGGCAGAGGCGGGGCCGCCCGCCGCCGCAGCCGCTGCCGCCGGTGGC
GGTCGACGAGCCGCGGTACCGGTACGAGCGCGTCCCGGGAGAGCAGAGGATGAGGATCCCGGGGCCGGTCCAGGCGCCGC
CGATGGGCCCGCGCCCGACTGGCAACGGCGGCTACAGGACCAACACCACGAGGGTCGAGCGCGTCACCACGATCAAGCAA
GACGA---CGGCGGCGGGCCTTACCCAGCGGGCGCGCCGGTGCCGGGCAACGGGAGCCC------GCAGCAGC---AGCA
GCACCACGATCACCAGGGGTCGACG-TCGCACACGCCGCCGGGACGTCCCCGCAGGACGCCGGG---GAGGAGGACTCCG
GC-AGGCTCCCCGGG---CTATCTCTCGCCGGACCGCGGCAGGGAGAAGCGCAGGCAGCTGCCGGCCTTCTGCTTCACCC
TCTGCTGCATCCTGTTCTGGCTGGCGGTGGTCATCGTCGGCGTGGCCGTGCTCACCGTGTACCTTTACTACCGCCCGCAG
CCGCCGAAGCTCCGGGTGACCGACGCGTCCTTGAACGCCGGGTACGTGGACGAGCTGACCGTCCCCGGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCCGACCTCACCGTGCTGACCGCTATCGCGAGCCCCAACACCAAGATGAAGATGGTCCTCTGGT
ACATGCAGCTGGACCTGTACTTCGAGGGCCACAAGATCGGCACTTCGACGGTGCTGCCGGCGCCGCTGTTCGAGGACCCC
CGCACCTACGCGCTCCGGACCGTGGACTTCGTCGTCAGCGAGGCGCCGCTGTCGCGGGAGGACGCCATTGCGTGGAGGAA
CGGGACGGTGGCGGGCGGGCCCGTGAAGCTCAAGGTCGTCGGGAAGTTCCACACGCAGCTCAACTTCGGGCGGTGGCTGC
CGTACAAGTACTGGGTGTACCCGCGCTGCACCATCTGGATGGACCCGCCGCCCACCGGCAAGCTGGTGCGGGCACGCTGC
TGA-----------------------------------------------------------------------------
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>chr3A_239
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----------------------------ATGAAGTGAATTAT------CGTCATCGCTGATCATTGGATCTGTCTGAACG
TAACAGTGGCAGACACCGTT------------CGTTCCCGCGGTGGCCGCGGTGCACGGCGGT----GGGAATCCGCGGT
CGTGGGGATGGAAGGAAGACCTAGCATCTCATCTCCGGGCCATACCTTGCGTGGGCCTGGAGCCGCAGGCATCCATCGTC
CTCTTCTTCACAGCGAGCACCGGAGATCCTGAACACGAGCGCTCCCATTTAAAATGTCATCACATCACTCAGACGTTCAG
AAAGAAGGCTCGCCGGAGAAAACAAACCAAAAGAAAGCCCAGCTCCCCG----------TGCCCAATTTTCCCCACGGTG
CTTTCCATCA-GATTGTTTTTTGTCGAGCTCGAGCACCTGTGCCGC-----------CCCAGAAAACCCCACGACAGAGA
CCACTTTCGAGCAGGTTTTGC----ATGCGCTTTTGAGCATCGTCCTTGGAGGTGGCAAGTAGCCACCGGCAAGCAAAGC
TCTGGTGCCACGGCAACCGGAAATTCCCTCTGCCAGTCGCCCTGCGCCTAGCT-------------GCCATGGCTAAGTT
GCTTGCTCGCAACGGCTACAGTACAGGAGAAACGATACCTTCCTTGCCCCCTTTCCCTCCAAAA-TTCTCCCCCCGTCCT
CCTCCTCTTCTCCCGAGCGCCTCTGTCCGTGCCTGCCGGTGCTGCGCCGTGGCCACGTTGCTTGCCCCGGTTACTTAACC
CCCCGCCCGCCCTCACTCTGCAGTGCCACGTCGCGCTGAGCCATTGGCCATTGCTGCTGATCGCTTCCAGCTCCCAGGCC
TGTAGCTAGCTGC-------TAGCTGGTGGTTCGCCCGTTGCCGGCCCCATGAGCAAGAGGCCGGTGGAGGCGGGCGGCG
AGCGGCCGCCGAGCCGTGGCCGCGCCGCGCCGCGCTCGGCTCGACACCACGGCGCGGGCGCGCAGAGGGAGGCGGAGGCG
GCGGCGGCCGCGGCGGCGGTGGCGGCCGCGCTGCGCGACGATGCTGCCGTGAGCAGCAGGGCGGCGATGGCGGCTCGCCC
CAGGCGTGGGCCCAACGAGTTCGTCTCCTACCGCCAGCCCGGCGCGAGCGAGGCGTCCATGCATCACCATCCTGGCGACG
AGCGCTTCCCCGGCGGGCCGAGCCACGGCG------AACTCCAGGAGGTCGACGAGCCCGAGGCGCCGGCGCAGCCGCCC
GGCGGCGGGCGCGGGCCCTACTACATGGCGCCGTGGCAGAGGCGGGGCCGGCCGCCGCCACAGCCGCTGCCGCCAGTGGC
GGTCGACGAGCCGCGGTACCGGTACGAGCGCGTCCCGGGAGAGCAGAGGATGAGGATCCCGGGGCCGGTCCAGGCGCCGC
GGATGGGCGCGCGCCCGACCGGCAACGGCGGCTACCGGACCAACACCACGAGGGTCGAGCGCGTCACCACGATCAAGCAA
GACGACGACGGCGGCGGGCCTTACCAGGCGGGCGCGCCGGTGCCGAGCAACGGGAGCCC------GCAGCAGCAGCAGCA
GCAGCATGATCACCAGGGGTCGACG-TCGCAGGCGCCGGCAGGACGTCCCCGCTGGACGCCGGG---GAGGAGGACTCCG
GC-AGGCTCCCCGGG---CTTCCTCTCGCCGGACCACGGCAGGAAGAAGCGCAGGCAGCTGCCGGCCTTCTGCTTCACCC
TCTGCTGCATCCTGTTCTGGCTGGCGGTGGTGGTGGTCGGCGTGGCCGTGCTCACCGTGTACCTCTACTACCGCCCGCAG
CCGCCGAAGCTCCGGGTGACCGACGCGTCCCTGAACGCCGGGTACGTGGACGAGCTGACCGTCCCCGGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCGGACCTCACCGTGCTGGCCGCCATCACGAGCCCCAACGCCAAGGTGAAGATGGTCCTCTGGT
ACATGCAGCTGGACCTGTACTTCGAGGGCCACAGGATCGGCACTTCGACGGTGCTGCCGGCGCCGCTGTTCGAGGACCCC
CGCACCTACGCGCTCCGGACCGTGGACTTCGTCGTCAGCGAGGCGCCGCTGTCGCGGGAGGACGCCATTGCGTGGCGGAA
CGGGACGGTGGCGGGCGGGCCCGTGAAACTCAAGCTCGTCGGGAAGTTCCACACGCAGCTCAACTTCGGGCGGTGGCTGC
CGTACAGGTACTGGGTGTACCCGCGCTGCACCCTCTGGATGGACCCGCCGCCCACCGGCAAGCTGGTGCGGGCACGCTGC
TGA-----------------------------------------------------------------------------
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>chr3D_1317
CCCGAA--------------------------------------------------------------------------
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--------------------------------------------CGAGCGAGGCGTAGATGCATCCTCATCCTGGCGACG
ACGGCATCCCCGGTAGGCCGAGCCACGACGGC------ATTGAGGAAGTCGACAA---------ACCGAAGGCGCTGCTG
CCGGCGTCCGCCAGGCTGTACTACATGGCGCTGTGGCAAAGGCATGGGCAGCCACCGCCAGCGCAGCTGCCGCGGATGGC
GGTCGACAGTCGACGGTACAGGTACGAGCGCGTCCCGGGAGAGTAGAGGACGAGGTTCCCATGGCTGATCCAGGCACCGC
GGATGGGCCCGCGCCCGACCGGCAACGGTGGCTTCAGGACGAACACCACAAGGGTCGAGCGCGTCACCACGATCAAGCCA
GACGA---AGGCGGCGCACCTTACCAAGTGGACGTGCCCGTATCGGGCAACGGGAGCCTGT---------AGCAGCACCG
GCACCATGATCACCAGGGGTCAACCATCGCAAATGCCGCCAGGACAT-CCCGCTAGACGCCGGG---GAGGAGGACTTCG
GAAAGGCTCCCCGGG---CTTCCTCTCGCTGGAGGCA---------AAGCGCAGGCAGCTGCCGGCCCTGT--TTCACTC
TCTGCTGCATCGTGTTCTGGCTGGCGGTGGTCGTCATCGTTGTGGCCGTGCTCACCGTGTACCTCATCTACCGCCCGCAG
CCGCCGAAGCTCCGG-TGACGGATGCGTCCCTGAACGACGGGTACGGGGACGAGTTG-CCGTCCCCAGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCCGACCTCACCCCGCTGGTCGCCATCAC-----------------------------------
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>chr6D_1317
CCCGAA--------------------------------------------------------------------------
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--------------------------------------------CGAGCGAGGCGTAGATGCATCCTCATCCTGGCGACG
ACGGCATCCCCGGTAGGCCGAGCCACGACGGC------ATTGAGGAAGTCGACAA---------ACCGAAGGCGCTGCTG
CCGGCGTCCGCCAGGCCGTACTACATGGCGCTGTGGCAAAGGCATGGGCAGCCACCGCCAGCGCAGCTGCCGCGGATGGC
GGTCGACAATCGACGGTACAGGTACGAGCGCGTCCCGGGAGAGTAGAGGACGAGGTTCCCATGGCTGATCCAGGCACCGC
GGATGGGCCCGCGCCCGACCGGCAACGGTGGCTTCAGGACGAACACCACAAGGGTCGAGAGCGTCACCACGATCAAGCCA
GACGA---AGGCGGCGCACCTTACCAAGTGAACGTGCCGGTATCGGGCAACGGGAGCCTGT---------AGCAGCACCG
GCACCATGATCACCAGGGGTCAACCATCGCAAATGCCGCCAGGACAT-CCCGCTAGACGCCGGG---GAGGAGGACTTCG
GAAAGGCTCCCCGGG---CTTCCTCTCGCTGGAGGCA---------AAGCGCGGGCAGCTGCCGGCCCTGT--TTCACTC
TCTGCTGCATCGTGTTCTGGCTGGCGGTGGTCGTCATCGTTGTGGCCGTGCTCACCGTGTACCTCATCTACCGCCCGCAG
CCGCCGAAGCTCCGG-TGACGGATGCGTCCCTGAACGACGGGTATGTGGACGAGTTGACCGTCCCCAGCGGCCCGGCCCG
CGGCCTCGCGCTCAACGCCGACCTCACCGCGCTGGTCGCCATCAC-----------------------------------
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>chr7D_1324
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--------------------------------------------CGAGCGAGGCGTAGATGCATCCTCATCCTGGCGACG
ACGGCATCCCCAGTAGGCCGAGCCACGACGGC------ATTGAGGAAGTCGACAA---------ACCGAAGGCGCTGCTG
CCGGCGTCCGCCAGGCCGTACTACATGGCGCTGTGGCAAAGGCATGGGCAGCCACCGCCAGCGCAGCTGCTGCGGATGGC
GGTCGACAATCGACGGTACAGGTACGAGCGCGTCCCGGGAGAGTAGAGGACGAGGTTCCCATGGCTGATCCAGGCACCGC
GGATGGGCCCGCGCCCGACCGGCAATGGTGGCTTCAGGACGAACACCACAAGGGTCGAGCGCGTCACCACGATCAAGCCA
GACGA---AGGCGGCGCACCTTACCAAGTGGACGTGCCGGTATCGGGCAACGGGAGCCTGT---------AGCAGCACCG
GCACCATGATCACCAGGGGTCAACCATCGCAAATGCCGCCAAGACAT-CCCGCTAGACGCCGGG---GAGGAGGACTTCA
GAAAGGCTCCCCGGG---CTTCCTCTCGCTGGAGGCA---------AAGCGCAGGCAGCTGCCGGCCCTAT--TTCACTC
TCTGCTGCATCGTGTTCTGGCTGGCGGTGGTCGTCATCGTTGTGGCCGTGCTCACCGTGTACCTCATCTACCGCCCGCAG
CCGCCGAAGCTCCGG-TGACGGATGCGTCCCTGAACGACGGGTACGTGGACGAGTTGACCATCCCCAGCGGCCCGGCCCG
TGGCCTCGCGCTCAACGCCGACCTCACCGCGCTGGTCGCCATCAC-----------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSS--SSSSSSSSSSS--S-SSS-SS-SS-SSS-S-S--S-SSSSSSS-SSSSSSSS-SSS
S---S-SSSS-SSSS-SSSSSS-SSSSSSSS-SSS-SSSSS--SSS-SS--SSS-S-S-SSSSSSSSSSS--S-SSSSSS
S--SSSSSSSS-SSS-S--SSSSSSSSSSSSS-SSSS-SS-SSSSSS-SS-SS-SSSS----------------------
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----------S-------------------------------------------------------------------S-
----------------------------------------------------S--------S-SSSS-------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------------------------------SSS-----------S---S--------------
----------S---------S--------------------------S-S-SS-SSS-S---------------------
----------S----------SSSS---------------S-----SS--------------------------------
----S-----------------------------------------------------SS---S----------------
--------SSS------------------S--------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------SSSSSSS-------------------------S-----------------------S----------
----------------------------------------------------S---SS----------------------
-----------S-----------------------------------------------------S--------------
------------------------------------------SS----------------------------S-------
------------------------------S-SSSS-------------S------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
-------------------------------------------------------------------S------------
---------------------------S-------------------S-----------SSSSSS---------------
------------------------------------------------S----S-SS---S-SSSSS---------S---
---------S-----SSS----S---------------------------------------------------------
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---------------------------------------------------------S-S--------------------
----------------------------------------------------------------------------S---
-----------------------------------------------S--------------------S-----------
--------------------------------------------------------------------------------
------------------------------------------------------S----SS------S------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1728
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AAAAGAAAGCCCAGCTCCCA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>reverse_2593
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------GGCGAAATCCAGGAGGTTGA----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------
>forward_2254
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAGCTT
CCAGGCTTGTAGCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>reverse_4156
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GATGC
AAGGGCGGTGTTTTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
