>input_sequence_48164
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CCCAAATCTCCCATCCCATCCCATCACCGCTTCCCAGCTCAGCTCA
GCTCAGCTCAGCCATCTCCGAGTCCGAGGCTCTGCTCTCATTCTCTTCTCTTCTCTTCTCCACTCCCCTCCTTGTTCCTC
GCGCTC-----TCGTTGCTGCGCTCCACGCTCCTCTGTTCCTCTCTCGTCGAGCCAAGATTTTACGGAGTTCGAAAACCG
TTAGTATTATCCCGGCGCCTCGCGGCACGCAGAGCACGGCTCGCGGCTTTACTGC-------------TCTGTTACATTT
CTGCTCGCCTTTT---TAAATAAAAAGAAGGTAAAGAGGAGGAGGAGGAGGAGGCCGTCTTTATTGCCTTCCCCTGCGCC
CGCTTCTGCTCTCATCGTCACTCCGTCCTCCTCACTGCTGCCGTTCCTTTGGTCTTTATCCCCCTGCCGATCCGCGCGCG
GAGCAGGAGCGAGCGATCCGCCCGCTCAATCGATCGTCAGCTTGCCCGGT-----------TAAGGCTGCAGCTTCCTTT
CCTGCTGGGGCCAGGGGGCTCGTTCTGAGCTTTCTACCT--CGTCTGTCTTCAAAGGGGTTTTGGGCGAGAGAGACATCG
GCATCCTCCTTTCTGTGTG------GTTTCCGGTGGTGGCGCGTGCCATGTCGCGGTCGCGCACGGTGCGAATCTACTGG
GACGATCCCGACGTGACGGACTCGTCCAGCGAGGAGGAGGACGGCTGCGCCGCTCGGAGGGTGGGAAGGATGGTGCGGGA
GCTCCCGCCGGCCCCGGCGCCGCTGGTGCACGCGGCGGCGGCGGCGGCTGCTGCTTCGCCGGAGCAGTGCAGCGCGGGAG
ACGACGACCTGCCGAGGCGTGTTGGTGGGTGCACCGGTGCGCGGAAGAGGCTGGCCAAGGGCGGCGGCTCCGCTGCGCAG
AGCACCAAGTTCCGCGGCGTCAGGCGGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGTGGCGTGCG
CGTCTGGCTCGGCACCTTCGACACCGCCGAAGAGGCCGCGCGCGTGTACGACAACGCGGCCATTCAGCTCCGCGGCGCCA
CCGCCACGACCAACTTCTCCACGTCCACCAAC---TCGGAGGGCGGCCAGGAGGACCTGACGGCGGCCGGGTACGAGTCC
GGCGCCGAGTCCTCGCAGGCGGTGTCGTCCCCGACGTCCGTCCTCCGCAAGGTGCCGTCCATGTCGTCCTTGGCGGAGGA
CAGGGGCGACTCGGAGGCCTGTCAGGGCGACGCCGCCGCC---GGCAGCAGCCTCAGCGTTCCGGAGGAGCTGGGCGAGT
TCGTGCCGTTCGAGGACGCGCCGGTCTACTCCAGCAGCAGCTTCTGGGACTTCGAGCCGCAGTCCGGGTTCCTCTACGCC
GAGCCGTCGTCGGCCGAGGAGGCCTCGTGGGACGCGTCCGCCGGCGG------CGAGCCGTGGGCCGCGCCGGTGCAGGA
GAACGACTACTTCTTCCAGGATTTGCGCGACCTGTTCCCGCTCAACCAGCTTCCCGCGATTTTCTAGTTGGGAGCGGCGG
AGCTTGCTTCCCTATCTTTTTTGGTGTATG-------TCGAGGGTATTTTGTCGTGTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr3A_1_TraesCS3A01G238300
TGCGCCATCCTCCATCCATCCCCTCTGCGTCCCGCGTGAGTGCGAGTGCGAGCGACCGGCACTGCCTGCCCGGCGGCCCC
CGCCGCTCAGGGACCACGCTGGCGCGGGGTCGGCCTCCGTACGGCGGCCAAAAGAAATATGACGACGGGGACGCACGCGA
CCGTGTTCCGTCTCTCGCTCGCACCGGAGCCGGAGCTCGGAAGGGATGGGGTGACTGGGGCACACACTCCCAGCGCGCGG
CTCATCGGTGCGGGCTTGACTGGGTGAACCAGAACCACCGCCAGTGGC-----AGTGAGGAGAGTGTCGACGAGGAATCG
GCCGTCCACACCGCCGCTACGCCCGAGGGACCGGGAATCGTCGACCAACGCGTGCAGCGTGGGGAGCACGTCATGCCTTC
GTGGCATCACTCCACCTATGTTCAGCGAGGAAAACAGTGCAGCTACCAT-------------------------------
--------------------------------------------------CCGTCTTTCTCAAAGAATTCACAACGCGCG
GTGGAGTGAT-------------------GCTCACGGCGTCACAGTTGGAGCAGGCCAGCCCGTACTGCCTACCCA----
-----------------------------GCCCATACCCGTTACGCATCGCCCCC--GTAGTTCTTCTCCCCTTGCGCTG
CGGCACTGCACACATCCAGCCAGCCAGCCAACCGGCGACCACGGCACCAGTTACCCACAGTGCCAGACACGGCAGCAGTT
TTGCAGGCGCCGCGCACAGTTTACAGCTACGAGTAAAATGGACG---------GAGGCGTCCTCGTCCTCCTCCTCGGGG
TTGGGTAATTAAACTAGTGGCGCGGGATTTGAAATGGAACCTGCCCCGTAAACCAATGCCATCGCATTGCAAGTAGCAGC
AGTAAACGCGGCCGGAGGAGAGGTTAAACCCGCAGGCTTTAATTACGGCCGGCGAGGCAGAGAT-----AGTTAAAAACG
CTTTCACGGCGGGATCGGGCGTGGGCTCCCGCAGGGCCTGTCGGGCCGGGGCATCCTATAAGACGGCGCTAACGAACCCC
AGCCAGTCCACTCTCCCAAAAACCTCCCCAAACCCCCAAATCTCCCATCCCATCCCATCACCGCTTCCCAGCTCAGCTCA
GCTCAGCTCAGCCATCTCCGAGTCCGAGGCTCTGCTCTCATTCTCTTCTCTTCTCTTCTCCACTCCCCTCCTTGTTCCTC
GCGCTC-----TCGTTGCTGCGCTCCACGCTCCTCTGTTCCTCTCTCGTCGAGCCAAGATTTTACGGAGTTCGAAAACCG
TTAGTATTATCCCGGCGCCTCGCGGCACGCAGAGCACGGCTCGCGGCTTTACTGC-------------TCTGTTACATTT
CTGCTCGCCTTTT---TAAATAAAAAGAAGGTAAAGAGGAGGAGGAGGAGGAGGCCGTCTTTATTGCCTTCCCCTGCGCC
CGCTTCTGCTCTCATCGTCACTCCGTCCTCCTCACTGCTGCCGTTCCTTTGGTCTTTATCCCCCTGCCGATCCGCGCGCG
GAGCAGGAGCGAGCGATCCGCCCGCTCAATCGATCGTCAGCTTGCCCGGT-----------TAAGGCTGCAGCTTCCTTT
CCTGCTGGGGCCAGGGGGCTCGTTCTGAGCTTTCTACCT--CGTCTGTCTTCAAAGGGGTTTTGGGCGAGAGAGACATCG
GCATCCTCCTTTCTGTGTG------GTTTCCGGTGGTGGCGCGTGCCATGTCGCGGTCGCGCACGGTGCGAATCTACTGG
GACGATCCCGACGTGACGGACTCGTCCAGCGAGGAGGAGGACGGCTGCGCCGCTCGGAGGGTGGGAAGGATGGTGCGGGA
GCTCCCGCCGGCCCCGGCGCCGCTGGTGCACGCGGCGGCGGCGGCGGCTGCTGCTTCGCCGGAGCAGTGCAGCGCGGGAG
ACGACGACCTGCCGAGGCGTGTTGGTGGGTGCACCGGTGCGCGGAAGAGGCTGGCCAAGGGCGGCGGCTCCGCTGCGCAG
AGCACCAAGTTCCGCGGCGTCAGGCGGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGTGGCGTGCG
CGTCTGGCTCGGCACCTTCGACACCGCCGAAGAGGCCGCGCGCGTGTACGACAACGCGGCCATTCAGCTCCGCGGCGCCA
CCGCCACGACCAACTTCTCCACGTCCACCAAC---TCGGAGGGCGGCCAGGAGGACCTGACGGCGGCCGGGTACGAGTCC
GGCGCCGAGTCCTCGCAGGCGGTGTCGTCCCCGACGTCCGTCCTCCGCAAGGTGCCGTCCATGTCGTCCTTGGCGGAGGA
CAGGGGCGACTCGGAGGCCTGTCAGGGCGACGCCGCCGCC---GGCAGCAGCCTCAGCGTTCCGGAGGAGCTGGGCGAGT
TCGTGCCGTTCGAGGACGCGCCGGTCTACTCCAGCAGCAGCTTCTGGGACTTCGAGCCGCAGTCCGGGTTCCTCTACGCC
GAGCCGTCGTCGGCCGAGGAGGCCTCGTGGGACGCGTCCGCCGGCGG------CGAGCCGTGGGCCGCGCCGGTGCAGGA
GAACGACTACTTCTTCCAGGATTTGCGCGACCTGTTCCCGCTCAACCAGCTTCCCGCGATTTTCTAGTTGGGAGCGGCGG
AGCTTGCTTCCCTATCTTTTTTGGTGTATG-------TCGAGGGTATTTTGTCGTGTACGTGTGGTGTGTCCCCGTGTAT
TTGTAACATGTCCGTGTGCGTTGCTGCT-----GTGTTGGGTCGACAAGAAGAGAAATGTATGATCCGGGTAGAGTTTT-
---------CACTGCTGTGCTGGGTACTA----TACTACGTCAAAGTTTTGTGTAGTACTGTCCACTCCGATACGCTGCA
GGGTGTACGTACATGTACGTACGTATAGGTGTTGTTCACT------------CTCCACTCCACTCCACAGTCCACAGCTA
---GCATGGTGCATGCGTGCTTTGGCTGGCACGGCTCCGCGGCGTGGTCCAAACGCT-CACTGCTCCAAATGGGGAGGCC
ATGATTTAGTTGCGCGGAAAGCTTGCGGGTTTTGGTGGTCGGTCGGGGCCAA------GCTGCGAAATTATCTGCCGGAT
CAACGGGGCTCGATCACGCTCACTCACACCACCCCGACTTGGGATCGAGGCAGTGCCGTGCCGGAGTTTGCATCGGTACA
GTGTCCGCCTGCCGGGCCGGA-----------CATGTCCGTGCGATAGATACAGACATGGCCGCTGGCTTCCCTTGTAAG
GAGCAGGTGTTTGGGTATTCATGGCGGGCATTTACGCCGGGTGCAGCAGCGGCGCGTTTTCCCTGAGATCGGGCTCGGCT
CCGGCCGGCCGGC--CGGGCAGGGAGTTATGGCGGCGAGCCCCGTACGCGTGCGCGTGTGAATCTTGTGACCCGACAGTG
GCGAGGGCGAGGGAGTGAATGCGAATG----GAGCGAGCGGGCGATGGCGCGGCGTGCAGGGGGAGTGAGAGCGGCGTGG
TCCTGCAGGCTGGCTCCTGGCTGAGGCGGTCGGGTCGA--------CCACCACCCACGTAGCGCCCCCGAGCAAGAACAC
GTACCCAGGTGACCACATGGGGAAGGAGACAGCGCAAAAGATAAGGGGGAGCTGAGATCGGCGGCAAGGAGCGACGTGGC
GGCGAGGACGAAGATGCGTACTGTTTTTTTTTGAGACAAAGATGCGTACTGCTTTTTTTTTGAGACAAAAAAAAAACTTC
TCCT
>chr3D_11
TCCTC-----------CATCCCCTCTGCGTCCCGCGTGAGTGCGAG------CGACCGGCA----CTGCCCGGCGGCCCC
CGCCGCTCAGGGACCACGCGGGCGCGGGGTCGGCCTCCGTACGGCGGCCAAAA-AAATATGACGACGGGGACGCACGCGA
CCGTGTTCCGTCTCTCGCTCGCACTGGAGCCGGAGCTCGGAAGGAATAGGGTGACTGGGGCACGCACTCCCAGCGCGCGG
CTCATCGGTGCGGGCTTGACTGGGTGAACCAGAACCACCGCCAGTGGCGTGGCAGTGAGTAGAGTGTGGATGAGGAATCG
GCCGTCCACACCGCCACTACGCCGGAGGAACCGGGAAGCGTCGACCAATGCGAGCAGTGGTGGGAGCACGTCATGCCTTC
ATGGCCTCGCTCCTCCGACATTCAGCCAGGAAACACATGCAGCTACATGATGAACCCTTCTCCAAAAAAAAAGGTACGTG
ATGAACGAAGGACTGTAGTGCTAGGCGAGTAAGCAAGTGCTAGGAAAACCCCATCTTCCTGAAAGAACACAGCCTCCATT
GAAGAGAAGGACACGATGGCGCAAGCTGCGGTCGCGGCGTCACAGTTGGAGCAGACCAGCGCGCACTGGCACTGGCACAG
CCTACGAGTTAAGTTGCCCAGGCCAGGCCGCCCATGCCCGTCACGCATCGCACCCCGGTAGTTCTTCTCCCCTTGCGCTG
CGGCACTGCACACATCC--------AGCCAGCCGGCGACCACGGCACCAGTTACCCACAGTGCCAAACACGGCAGCAGTT
TTGCAGGCGCCGCGCACAGTTTACAGCTACGAGTAAAATGGACG---------GAGGCGTCCTCGTCCTC------GGGG
TTCGGTAATTAAACTAGTGGCGCGGGATTTGAAATGGAACCTGCCCCGTAAACCAATGCCAGC----------------C
AGTAAATGCGGCTGGAGGAGAGGTTAAACCCGCAGGCTTTAATTACGGCCGGCGAGGCGAGGCG----GAGTTAAAAACG
CTTTCACGGCGGAATCGGGCGTGGGCTCCCGCAGGGCCTGTCGGGCCGGGGGATCCTATAAGACGGCGCTAACGAACCTC
AGCCAGTCCACTCTCCCAAAAACCTCCCCAAACCCCCAAATCTCCCATCCCATCCCATCACCGCTTCCCAGCTCAGCTCA
GCTATC----------------TCCGAGGCTCTGCTCA-------TTCTCTTCTCTTCTCCACTCCCGTCCTTGTTCCTC
GCGCTTTCGTTTCGTTGCTGCGCTCCACGCTCCTCTGTTCCTCTC--GTCGAGTTAAAATTTTACGGAGTTCGAAAACCG
T---TATTATCCCGGCGCCTCGCGGCAGGCAGAG----------GGCTTTACTGC-------------GCTGTTACATTT
CTGCTCGCCTTTTTTCTAAATAAAAAGAAGGTAAAGAGGAGGAGGAGG------CCGTCTTTATTGCCTTCCCCTGCGCC
TGCTTCTGCTCGCATCCTCACTCCGTCCTCCTCACTATTGCCGTTCCTTTGGTCTT-ATTCCCCTGCTGATCCGCGCGCG
GAGCAGGAGCGAGCGATCCACCCGCTCAATCGATCGTCAGCTTGCTCGGT-----------TAAGGCTGCAGCTTCCTTT
CCTGCTGGGGCCAGGGGGCTCCTTCTGAGCTTTCTACCTG-----TGTCTTCAAAGGGTTTTTGGGCGAGAGAGACATCG
GTATCCTCCTTTGTGTGGTTTCCGCGTTTCCGGTGGTGGCGCGTGCCATGTCGCGGTCGCGTACAGTGCGAATCTACTGG
GACGATCCCGACGTGACGGACTCGTCCAGTGAGGACGACGAGGGCTGCGCCGCTCGGAGGGTGGGAAGGATGGTGCGGGA
GCTTCCGCCGGCCCCGGCGCCGCTTGTGCAGGCT------------GCTGCTGCTTCGCCGGAGCAGTGCAGCGCGGGAG
ACGACGACCTGCCGAGGCGTGTTGGTGGATGTACCGGTGCGCGGAAGAGGCTGGCCAAGGGCGGCGGCTCCGCTGCGCAG
AGCACCAAGTTCCGCGGCGTCAGGCGGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCG
CCTCTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGTGTACGACAACGCGGCCATTCAGCTCCGCGGCGCCA
CCGCCACGACCAACTTCTCCACGTCCACCAAC---TCGGAGGGCGGCCAGGAGGACCTGACGGCGGCCGGGTACGAGTCC
GGCGCGGAGTCCTCGCAGGCGGTGTCGTCCCCGACGTCCGTGCTCCGCAAGGTGCCGTCGATGTCGTCCTTGGCGGAGGA
CAGGGGCGACTCGGAGGCCTGCCAAGGCGACGCCGCCGCTGCTGGCAGCAGCCTCAGCGTTCCGGAGGAGTTGGGCGAGT
TCGTGCCGTTCGAGGACGCACCGGTCTACTCCAGCAGCAGCTTCTGGGACTTCGAGCCGCAGTCGGGGTTCCTCTACGCC
GAGCCGTCCTCAGCCGAGGAGGCTTCGTGGGACGCGTCCGCCGGCGGCGAGGCCGAGCCGTGGGCCGCGCCGGTGCAGGA
GAACGACTACTTC---CAGGATTTGCGCGACCTGTTCCCGCTCAACCAGCTTCCCGCGATTTTCTAGACGGGGGCGACGG
AGCTTGCTTCCCTATCTTTTTTCGTGTATG-------TCGAGAGTATTTTGTCGTGTACGTGTGGTGTGTCCCCGTGTAT
TTGTAACATGTCCGTGTGCGTTGCTGCTTTTCTGTGTTGAGTCGACGAGAAGAGAAATATATGATCCGGGTAAAGTTTCC
AAGTGCTACCACTGCTGTGCTGGGTACTA----TACTACGTCAAAGTTTTGTGTAGTACTGTCTACTCCGATATGATGCA
GGGCGTAC----------GTACGTATTGGTGTTGTTCAATGTTCACTCTCCACTCCACTCCACTCCACAGTCCACAGCTA
CTAGCATGGTGCATGCGTGCTTTGGTTGGCACGGCTCCGCGGCGTGGTCCAAACGCT-CCCTGCTCCAAATGGGGAGGCC
ATGATTTAGTTGCGCAGAAAGCTTGCGGGTTTTGGTGGTCGGTCGGGGCCATGATTTTGTTGGGAAATCATCTGCCTGAT
CAA------------ACGCTCACTCACACCACCCCGACTTGGGATCGAGGCAGTGCCGTGTCGGAGTTTGCATCGGTACA
GTGTCCGCCTGCCGGGCCGGACACCGTCGTGCCATGTCCGTGCGATAG--ACAGACATGGCCGCTGGCTTCCCTTGTAAG
GAGCAGGTGTTTGGGTATTCAT---GGGCATTTACGCCGGGTGCAGCAACGGCGCGTTTTCCCTGAGATCGGGCTCGGCT
CCGGCCGGCCGGGCA------GGGAGTTATGACGGCGAGGCCCGTACGCGTGCGCGTGTGAATCTTGTGACCA-ACAGTG
GCGAGAGCGAGGGAGTGAATGCGAATC----CAGCGAGCGGGCGATGGCGCGGCGTGCGGGAGGACGGAGAGCGGCGTGG
TCCTGCAGGCTGGCTCCTGGCTGAGGCGGTCGGGTCGACCACGAGTCCACGACCCACGTAGCGCCCCCGAGCAAGAACAC
GTACCACGGTGACCACATGGGGAAGGAGACAACGCAAAAGATAAGATGGC--------------GAAGGAGCTACGTGGC
GGCGAGGACGAAGATGCGTACTACTTTTTTTTTTGACAAAGAT-------------------------------------
----
>chr3B_11
TCCTC-----------CATCCCCACTGCGTCCCGCGTGAGTGCGAG------CGACCGGCA----CTGCCCGGCGGCCCC
CGCCGCTCAAGGACCACGCTGGCGCGGGGGCGGCCTCCGTACGGCGGCCAAAA-AAATATGACGACGGGGACGCACGCAA
CCGTGTTTCGTCTCTCTCTCGTACTGGAGCCGGAGCTCGGAAGGAATGGGGTGACTGGGGCACACACTCCCAGCGCGCAG
CTCATCGGTGCGGGCTTGACTGGGTGAACCAGAACCACCGCCAGTGGC-----AGCGAGGAGAGTGTGGATGAGGAATCG
GCCGTCCACACCGCCACTACGCCCGAGGAACCGGGAAGCGTCGACCAATGCGAGCAGTGGTGCGAGCACGTCATGCCTAA
ATGGCCTCGTTCCTCCGACATTCAGCCAGGAAACACATGCAGCTACGTGATGAACCCTTCTCCGAAAAAAAC--TACGTG
ATGGATGAAGGACTGTAGTGCTAGGCGAGCAAGCAAGTGCTAGGAAAACCCCATCTTCCTGAAAGAACACGGCCTCCATT
GAAGAGAAGGACACGATGGCACAAGCTGCGCTCACGGCGTCACAGTTGGAGCAGACCAGCGCGCACTG----TGGCACAG
CCTACGAGTTAAGTTGCC------AGGCCGCCCATGCCCGTCACGCATAGCCCCCCGGTAGTTCTTCTCCCCTTGCGCTG
CGGCATTGCACACATCC--------AGCCAGCCAGAGACCACGCCACCAGTTACCCACAGTGCCAAACACGGCAGCAGTT
TTGCAGGCGCCGCGCACAGTTTACAGCTACGAGTAAAATGGACGGAGGCGAAGGAGGCGTCCCCCTCCTC------GGGG
TTCGGTAATTAAACTAGTGGCGCGGGATTTGAAATGGAACCTACCCCGTAAACCAATGCCAGC----------------C
AGTAAATGCGGCTGGAGGAGAGGTTAAACCTGCAGGCTTTAATTACGGCCGGCGAGGCGAGGCGTTCCGAGTTAAAAACG
CTTTCACGGCGGAATCGGGCGTGGGCTCCCGCAGGGCCTGTCGGGCCGGGGGATCCTATAAGACGGCGCTAACGAACCTC
GGCCAGTCCACTCTGCCAAAAACATCCCCAAACCCCCAAAACTCCCATCCCATCCCATCACCGCTTCCCAGCTCAGCTC-
--------------------------------TGCTCA-------TTCTCTTCTCTTCTCCACTCCCGTCCTTGTTCCTC
GCGC-----TTTCGTTGTTGCGCTCCACACTCCTCTGTTCCTCTCTCATCGAGCCAAGATTTTACAGAGTTCGAAAACCG
T---TATTATCCCGGCGCCTCGCGGCAGGCAGAG----------GACGGCTCGCCTGCTCGTATAGTTGCTGTTACATTT
CTGCTCGCCTTTTTAAAT-----AAAGAAGGTAAAGAGGAGGAGGAGG------CCGTCTTTATTGCCTTCCC-------
-----CTGCTCGCATCGTCACTCCGTCCTCCTCACTGC---CGTCCCTTTGGTCTTTATTCCCCTGCTGATCCGCGCC--
--------------------CCCGTTCAATCGTTCGTCAGCTCGCTCAGGCGCAGCGCGGCTAAGGCTGCAGCTTCCTTT
CCTGCTGGGGCCAGGGGGCTCGTTTTCAGCTTTCTAAACTGCGTCTGTCTTCAAAGGGGTTTTGGGTGAGAGAGACACCC
TTCGTGTGCTTCCGGTGGTGGAGAAGAAGAGT----TGGCGCGTGCCATGTCGCGGTCGCGCACGGTGCGTATCTACTGG
GACGATCCCGACGTGACGGACTCGTCCAGCGAGGACGACGAGGGCTGCGCCGCTCGGAGGGTGGGAAGGATGGTGCGGGA
GCTTCCGCCGGCCCCGGCGCCGCTGGTGCAGGCGGCGGCGGCGG------CTCCTTCACCGGAGCAGTGCAGCGCGGGAG
ACGACGACCTGCCGAGGCGTGTTGGTGGATGTACCCGTGCGCGGAAGAGGCTGGCCAAGGGCGGCGGCTCCGCTGCGCAG
AGCACCAAGTTCCGCGGCGTCAGGCGGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCG
CGTCTGGCTCGGCACTTTCGACACCGCCGAGGAGGCCGCGCGCGTGTACGACAACGCGGCCATTCAGCTCCGCGGCGCCA
CCGCGACGACCAACTTCTCCACCTCCTCCACGAATTCGGAGGGCGCCCAGGAGGACCTGACGGCGGCCGGGTACGAGTCC
GGCGCGGAGTCCTCGCAGGCGGTGTCGTCCCCGACGTCCGTGCTCCGCAAGGTGCCGTCGATGTCGTCCTTGGCGGAGGA
CAGGGGCGACTCGGAGGCCTGTCAAGGCGACGCCGCTGCC---GGCAGCAGCCTCAGCGTTCCGGAGGAGCTGGGCGAGT
TCGTGCCGTTCGAGGACGCGCCGGTCTACTCCAGCAGCAGCTTCTGGGACTTCGAGCCGCAGTCGGGGTTCCTCTACGCC
GAGCCGTCCTCAGCCGAGGAGGCCTCGTGGGACGCGTCCGCCGGCGG------CGAGCCGTGGGCCGCGCCGGTGCAGGA
GAACGACTACTTC---CAGGATTTGCGCGACCTGTTCCCGCTCAACCAGCTTCCCGCGATTTTCTAGATGGGAGCGGCGG
AGCTTGCTTCCCTATCTTTTTTGGTGTATGTCGAGACTCGAGAGTATTTTGTCGTGTACGTGTGGTGTGTCCCCGTGTAT
TTGTAACATGTCCGTGTGCGTTGCTGCTG-TCTGTGTTGAGTCGACGAGAAGAGGAATGTACGATCCGGGTAGAGTTTT-
---------CACTGCTGTGCTGGGTACTACTACTACTACGTCAAAGTTTTCT---GTACTGCCCACTCCGATACGCTGCA
GGGTGTACCGTA-------TACGTATAGGTGTTGTTCACT------------CTCCACTCCACTCCACAGTCCACAGCTA
---GCATGGTGCATGCGTGCTTTGGTTGGCATGGCTCCGCGGCGTGGTCCATACGCCCCCCTGCTCCAAATGGGGAGGCC
ATGATTTAGTTGCGCAGAAAGCTTGCGGGTTTTGGTGGTCGGTCGGGGCCATGATTTAGTTGCGAAATTATCTGCCGGAT
CAACGGGGCTCGATCACACTCAT-------ACCCTGACTTGGGATCTAGGGAGTGCCGTGTTCGAGTTTGCATCGGTACA
GTATCCGCCTGCCGGGCCGGACACCGTCGTGCCATGTCCGTGCGATAG--ACAGACATGGCCGCTGGCTTCCCTTGTAAG
GAACAGGTGTTTGGGTATTCAT---GGGCATTTACGCCGGGTGCAGCAACGGCGCGTTTTTCCTGAGATCGGGCTCGGCT
CCGGCCGGCCGGGCACGGGCAGGGAGTTATGACGGCGAGCCCCGTACGCGTGCGCGTGTGAATCTTGTGACCA-ACAGTG
GCGAGAGCGAGGGAGTGAATGCGAATCGAGCGAGCGAGCGGGCGATGGCGCGGCGTGC----------AGAGCGGCGTGG
TCCTGCAGGCTGGCTCATGGCTGAGGCGGTCGGGTCGACCACGA--------CCCACGTAGCGCCCCCCAACAAGAACAC
GTACCAAGGTGACCACATGGGGAAGGAGACAACGCAAAAGATAAGGAGGAGCTCAGACCGGCGGGAAGGAACTACGTGGC
GGCGAGGCCGACGATGCCTACTGTTTCTTTCTTT----------------------------------------------
----
>SNPs
-S-S-SSSSSSSSSSS------------------------------SSSSSS---------SSSS---------------
-----------------------------------------------------S--------------------------
------------------------S-------------------S-----------------------------------
-------------------------------------------------------------------S--S---------
---------------S------------S--------S----------S---S----S-SS-------------------
S----S--S----S--S-SS------S------SSSS---------SSS-------------------------------
----------------------------------------------------S----S--S------SS--SSSSS-SSS
-SS---SSSS--------------------------------------------S-----S--S----S-SSSSSS----
-----------------------------------S-----S--------------------------------------
-----------------SSSSSSSS-----S----------------------------------S--------------
----------------------------------------------------------------------SSSSSS----
--S----------------------------------------------------------S-SSSSSSSSSSSSSSSS-
------S-----S---------------------------------------------SSS-SS----------------
------------S--------------------------------------S--------------------------S-
--------------------------------------------------------------------------------
---SSSSSSSSSSSSSSSSSSS---------------SSSSSSSS----------------------S------------
-----S--------------------------------------------------------------------------
-SSS-----------------------S------SSSSSSSSSS------------------------S-----------
------------------------------------------------SSSSSS--------------------------
S----------S-----------------------------------------------S-------S------------
-------------------S-------------------------S----------------------------------
--------------------------------------------------------------------------------
-S---------------SS-------------------------------------------------------------
-----------------------------------S--S--S--------------------------------------
---S--------------------------S-------------SS----------------------------------
----------------------------S--S------------------------------------------------
-------------------------------------------S---------------------------S--------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
-----S-----------------------------------S-----------------S--------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------------S---------------
--------S--S--------------------------------------------------------------------
-------------SSS---------------------------------------------------S------------
------------------------------------------S-------------------------------------
---------------------------------------S------S---------------------------------
--------------------------------------------------------------------------------
--------SSSSSSSSSS--------------------------------------------------------------
-------------------------S---------------------------------S--------------------
---------------S-----------------------------------S-------S--------------------
------------------------------------------------------------S-------------------
------------------------------------------------SS------------------------------
----------------------SSS-----------------------S-------------------------------
------------S------------------S----------------------------------------SS------
-----S--------------------S-------------------------------S--S---SS-------------
--------------------------------------------------S-----------------------------
-----S-------------------------S--------------S------S---S------S-------S-------
--------------------------------SS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_308
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GTGGCAGTGAGGAGAGTGTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_1489
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AGGAGGCCGTCTTTATTGCC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_311
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCAGTGAGGAGAGTGTCGAC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_1493
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGCCGTCTTTATTGCCTTCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_945
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CCGTAAACCAATGCCATCGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2380
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CATGTCGTCCTTGGCGGAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CG
GCATCCTCCTTTCTGTGT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_3686
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CAGGTGACCACATGGGGAAG-------------------------------------------------------
--------------------------------------------------------------------------------
----
