>input_sequence_48119
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-------------------ATGGAGGCGGCGGCCGAGTGCGCGGGCGGCGGCGGCGGCGGCGCCCTAAGGGAGGTCAAGA
AGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCGACGACCTCCTCGACCTGCCCTGCGACGACGACGAGGAGGAGGACGAC
GCGGCGGCGGCGGGGTTC---------------GCCGACGGCGCCGCGGACTGTAGCGCCGGCGAGGCCGGGGG---CGG
CGGCGGCAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAGCTGCAGCAACTCCCTCTCCGGCGGCCTCGCCG
ACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATT---------------------------------------
--------AATTCCTCTCTTTTTACCCTCCCGTGTCCA-----------------TTATTA---ATTCACGCGTTATTCC
TTCGT---CGCACGA-----ATTTATCAAATTTTGGCGG----ACGAATTATTC----------------------ACGG
TCAATGCGTTCGTCTCC----CCCCATTAACACTCGCC------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CCG---------------CCCCATGA
ATGAAGGCAGCTTTTGGAGTGACGTCTCCCGTAAATAGTAACCGATGAACCCCGCGGCCGG-------------------
----------AAATAGCAACCTCCTAAATGCTCTCC------------GTTTCTCCGGACACGGAAACGAAACGAATACT
CGATCACTTTATTATCATTTCCGAGCTAATTCCGCGGCGCTCGTTTGGTT-CCATTGCTGAAAATCGTGTGCTGTGTGT-
-CTGTGGATTT--------GCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACAT------GGGCGACGAC
AACTTCCCCACCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCGTCGTCC---------------CA
GACGGCC---CCGCGCGCGCCCGCCGC---GCCGGTGCAGCCTTGTGGCGGTGGTGG---CGTCGGTACGGCCTTGTGGC
GCTCGGAGGCGCACGCCGGGCAGGTGTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGG
TCCTCCCGCCTGCTCGTGCTCCCGCCGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTC
CGGGAC---------GGCGTTCCCGCTCTTCCCGAACAAGAAGCCCGCCAAGTCGTCCAAGAAGGAGGG---GCCGGC--
----------------------------------CGCCCCCGCCATGACCGCCGCCGA---GGCCGCGGCCGCGGAGGGG
CGGCGGTGCCTGCACTGCGAGACCGACAAGACCCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGTGCAACGC
GTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCGTCCAAGC
ATTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACCCCGCAGCAGCAGCTCCTGCACCATTCTCAG
CACAAGCCGCCGCAGCAGCAGCTCCTGCACCATTCTCAGCACCAGCCGCCGCAGCAGCAGCACCAGCTGGGGCCGGGCCT
GGGGTTCCAGGTGCCGAGCCCGCTGCTGTTCGACGGGCCG---------CACCTGGGCGGCGGCGCGGACGAGTTCCTCA
TCCGCAACCGCATAGGCCCCGACCACCGGCAGCTCATCTAG---------------------------------------
--------------------------------------------------------------------------------
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-----
>chr1B_1_TraesCS1B01G353700
AAGGGA-GGGGCACCATTTGAGGAGG-AGCACAACATGAAATACTAAGAGTGGATACAGATGGGA-----CGGCGAAAAC
GACGTTGTGGAGCACAATGGCGCGAGTAAGAGATAGATGGAGAGGGCGAGGGGGGAAGGGAGT-GGATGGCGGCGACTAT
AAGAGGGGGCGACCCACGTGGAAGCATGACCAGGTAACACTCTATTTCATGCAATGCACGCTACATAGCCGAGTGAGGTA
CATAGTCGAATGGGGTACACGCATGTGTACTTCGACTATTATGACCTGTTGCGAGCATCATATAATGCTACCTCCCCTTC
ATGGTG-CCCCAATCACGGTGGTTTTTGCAGAGTGATTTTGTACAAGAATCAACACAGGGTAAATCATCAAT-AAAAACC
TCAAATGTGGATCTTTGAATTAAAGAAGTGATTCAATGCTTGCTAGCAAATTTGCCTTTTGCCATGAAGCAAATTAC---
---AATCAAAACGCTCATAAAAAACCC---------ATTCAAACTCACCAAAAATGACCCAATCAGCCCGATGTTGCCAT
AGAT---------GAAGGCGACGAGCACATGGTGCTGCACTGCACTGCATGGTGGCGCTACTGCTGTCATGCAAATGTCG
TCTTCCCCGCGACCAT------AAATCGGGGAGCTGTTTCCTTTT---------------TCTCTCTCACCGCGGTG--A
AACCCCGATTTAACAGGCTTTTAAGGGTGGCCTCCACCACCGCCAGCGCCAGGCCCAGCCAGCAGGCCAGG---------
-------------------------------------------GAAGAGTGGCTCTGGCTTTATTTACTCCTAAAGAATC
GTTCAGCCGAGCTCCGCTTGACCCCTCCCCCCTCCCCTCCCCTCTCTCTCCTCCACTCCGCTCCCT---CC----CGATT
AAACCCTACTCTCTCTCTCCGCCT-GCGTCTTTTCCGC-CCGCCTCCACCCAGCGAAAAAATAATTCCGGGGGCGACGGC
CGTCGGGAGTCGATAGAATTCGTCCCG------------GGAGGAGGAGGAGGAGGGATTTC---TCGTTTTGTTCTGTT
TGTTTGGATTTGG------ATGGAGGCGGCGGCCGAGTGCGCGGGCGGCGGCGGCGGCGGCGCCCTAAGGGAGGTCAAGA
AGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCGACGACCTCCTCGACCTGCCCTGCGACGACGACGAGGAGGAGGACGAC
GCGGCGGCGGCGGGGTTC---------------GCCGACGGCGCCGCGGACTGTAGCGCCGGCGAGGCCGGGGG---CGG
CGGCGGCAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAGCTGCAGCAACTCCCTCTCCGGCGGCCTCGCCG
ACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATT---------------------------------------
--------AATTCCTCTCTTTTTACCCTCCCGTGTCCA-----------------TTATTA---ATTCACGCGTTATTCC
TTCGT---CGCACGA-----ATTTATCAAATTTTGGCGG----ACGAATTATTC----------------------ACGG
TCAATGCGTTCGTCTCC----CCCCATTAACACTCGCC------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CCG---------------CCCCATGA
ATGAAGGCAGCTTTTGGAGTGACGTCTCCCGTAAATAGTAACCGATGAACCCCGCGGCCGG-------------------
----------AAATAGCAACCTCCTAAATGCTCTCC------------GTTTCTCCGGACACGGAAACGAAACGAATACT
CGATCACTTTATTATCATTTCCGAGCTAATTCCGCGGCGCTCGTTTGGTT-CCATTGCTGAAAATCGTGTGCTGTGTGT-
-CTGTGGATTT--------GCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACAT------GGGCGACGAC
AACTTCCCCACCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCGTCGTCC---------------CA
GACGGCC---CCGCGCGCGCCCGCCGC---GCCGGTGCAGCCTTGTGGCGGTGGTGG---CGTCGGTACGGCCTTGTGGC
GCTCGGAGGCGCACGCCGGGCAGGTGTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGG
TCCTCCCGCCTGCTCGTGCTCCCGCCGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTC
CGGGAC---------GGCGTTCCCGCTCTTCCCGAACAAGAAGCCCGCCAAGTCGTCCAAGAAGGAGGG---GCCGGC--
----------------------------------CGCCCCCGCCATGACCGCCGCCGA---GGCCGCGGCCGCGGAGGGG
CGGCGGTGCCTGCACTGCGAGACCGACAAGACCCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGTGCAACGC
GTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCGTCCAAGC
ATTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACCCCGCAGCAGCAGCTCCTGCACCATTCTCAG
CACAAGCCGCCGCAGCAGCAGCTCCTGCACCATTCTCAGCACCAGCCGCCGCAGCAGCAGCACCAGCTGGGGCCGGGCCT
GGGGTTCCAGGTGCCGAGCCCGCTGCTGTTCGACGGGCCG---------CACCTGGGCGGCGGCGCGGACGAGTTCCTCA
TCCGCAACCGCATAGGCCCCGACCACCGGCAGCTCATCTAGCCTAGCTTAGCTAGCCAGCGCCGCCCAGCTCGCCTAGGA
GGAGGATCGTTCCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAA----CAGCCAGCCCAGCCCAGCTAAAACTTTTT
T--CCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCTACACTCT
CCGTGTTTCTCAG-----TCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGCATTTTGTTCGTTTTCCTTCCTTCT
CTTCTTTTTTCATAGACTTTTTTC--TTTGCTTTTCCATAGATTTTTTCCTTCATTTTCTTGTAATGCAGTCAGTGCAG-
----GGTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAACAGCAGCAAACAGCAACGAGCAGCAGTGTTTTTCTTT
GAAAGCAATTCTGCAAAAGTAAC----CAGTGAAATTGAGCAAA----GCTA----GTAGCTCGAGGCTCCAGGCTCGCA
TGTGATTTCCAATCTTGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCC-----CTGTGGTGTTGAATCCAT--
--CCA------TCGATCGATCAAACAAAACAAATGGTATGATAAGGGGCACGCAC-------------GCTGGCTGGCGC
GCACAAAGTGACACGACTAGGGTGTGTCCAACCGAACCCCAGACCCAGGCCGGGCATGGCATAGGAGC----AGTGGAGG
GGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGGTGCAGCAGATGCTT
AACGAATTTCTTTTT-CTTTTACAGCGTCGGCATCATCATCGTCA------ACAGTCTCACAACTGGCCCTGTGTGCCCA
CCGGGCCAATTGAAAGCCGATACGTCAGCGGCTCCTAGCTCTAGAGTAAATATCTTTTCAGTGTCAGCTAAGCTAGCAGC
GTTCTCAGTGA---------------GTGGGCCGGGCGGGCCGCGTGGTGACTGCGAGTGCGAGAGATCGGATCCAACCA
CTTCG
>chr1D_1
AAGGGAGGGAGCACCATTTGAGGAGGCAGCACGACATGAGATGCTAAGACTGAAGATAGGGGGGTGGGGGCGGCGGAATT
GACGATGTGGAGCACATTGACACGAGTGTGAGATAGATGGAGAAGGCGAGGGGGGAGGGGGGGGGGATGGCGGCGACTAC
AAGAGGGGGCGACCCACGAGGAAGCATGAGCTGGTAACACTCTATCTCATGTAATGCACGCTACATAGCCGAGTGAGGTA
CATAGTCGAAC--GGTACACGCATATGTACTCCAACTATTCTGTAGTGTTGCGAGCATCGTGTAATGCTACCTCCCCTTG
ATCGTG-CCCCGATCGCGGCGGTTTTTGTAGAATGATTTTGTACAAAAACCAACACAGTGTAAATCCTCAAT-AAAAACC
CCTAATGTGGATCTTTGAATTAAAGAAGCGATTCAATGCTTGCTAGCAAATTTGCCTTTTGCCATGAAGCAAATTAC---
---AATCAAAACGCTCATAAAAAACCA---------ATTCTAACTCACCAAAAATGATCCAATCAACCCGATGTTGCCGT
ACAT---------GAAGGCGACGAGCACATGATG-----CTGCACTGCATGGTGGCGCTACTGCTGTCATGCAGATGTCG
TCTTCCCCGGGACCAT------AAATCGGGGAGCTGTTTCCTTTTCC-------------TCTCCCTCACCGCCGTGTAA
AACCCCGATTTAACAGGCTTTTAAGGGTGGCCTCCACC---GCCAGGGTCAGGCCCAGCCAGCAGGCCATT---------
-------CCAGAGAAGAGCC---------------------------AGTGGCTCTGGCTTTATTTACTCCTAAAGAATC
GTTCAGCCGA-----GCTTGACCCCTCCCCCTCCCCCTCCCATCTCTCTCCTCCACTCCGCTCCCCCTCCC----CGATT
AAACCCTACTCTCTCTCTCCGCCTCGCGTCTTTTCCGC-CCGCCTCCACCCAGGGAAAAAATAATTCCGGGGGCGACGGC
CGTCGGAAACCGGTAGAATTCGTCCGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATTTCGTTTCGTTTTGTTCTGTT
TGTTTGGATTTGG------ATGGAGGCGGCGGCCGAGTGCGCGGGCGGCGGCGGT------GCCCTAAGGGAGGTCAAGA
AGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCGACGACCTCCTCGACCTGCCCTGCGACGACGAC---GAGGAGGACGAC
GCGGCGG------GGTTC---------------GCCGACGGGGCCGCGGACTGTAGCGCCGGCGAGGCCGGCGG---CGG
CGCCGGGAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAGCTGCAGCAACTCCCTCTCCGGCGGCCTCGCCG
ACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATT---------------------------------------
--------AATTCTTCTCCTCTTACCCTCCCATGTCC--------------------ATTA---ATTCACGCCTTATTCC
TTCGTTGGCGAACAA-----ATTTATCAATTTCTGGCGA----ACGAATTACTCGGAATTTCCATGGCTAGCTGGAACGG
TCAATGCGTTCGTCTCC----CCCCATTAACACTCGCC------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CCACCCCACCCCACCCCACCCCATGA
ATGAAGGCAGCTTTTGGAGTGACGTCTCCCGCAAATAGTAACCGATGAAACCCGCGGCCGG-------------------
----------AAATAGCAACATCCTAAATAGCAAC---------------------------------------------
--ATCAATTTATTATCATTTCCGAGTTAATTGCGCGGCGCCCGTCTCGTT-CCATTCCTGAAAATTGTGTGCTGTGTGC-
-CTGTGGATTT--------GCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACAT------GGGCGACGAC
AACTTCCCCACCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCCTCGTCC---------------CA
GACGGCGCCGCCGCGCGCGCCCGCCGC---GCCGGTGCAGCCTTGTGCCGGTGGTGG---CGCCGGTACGGCCTTGTGGC
GCTCGGACGCGCACGCCGGGCAGGTGTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGG
TCCTCCCGCCTGCTCGTGCTCCCGCCGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTC
CGGGAC---------GGCGTTCCCGCTCTTCCCGAACAAGAAGCCCGCCAAGTCGTCCAAGAAGAAGGAGGCGCCGGC--
----------------------------------CGCGCCCGCCATGACCGCCGCGGA---GGCCGCGGCCGCGGAGGGG
CGGCGGTGCCTGCACTGCGAAACCGACAAGACGCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGTGCAACGC
GTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCGTCCAAGC
ACTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACACCGCCCCAGCAGCTGCTGCACCATTCCCAG
CACCAGCC------------------------------------------GCCGCCGCCGCAGCAGCTGGGGCCGGGCCT
GGGGTTCCAGGTGCCGGGCCCGCTGCTGTTCGACGGGCCG---------CGCCTGGGCGGCGGCGCGGACGAGTTCCTCA
TCCGCAACCGCATAGGGCCCGACCACCGGCAGCTCATCTAGCCTAGCTTAGCTAGCCAGCGCCGCCCGGCTCGCCTAGGA
GGAGGATCGTTTCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAAGAGCCAGCCAGCCCAGCCCAGCTAAAACTTTTT
T--CCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCTACACTCT
CCGTGTTTCTCAGTCAGCTCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGTAGTGCA---GTTTGTTTTCCTTCT
CTTCTTTTTTCATAGCCTTTTTCTTTTTTGCTTTTCCATAGAGTTTCTTCTTCATTTTCTTGTAATGCAGTCAGTGCAG-
----GGTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAGCAGCAGCAAACAGCAACGTGCAGCAGTGTTTTTCTTT
GAAAGCAATTCTGCAAAAGTAAC----TAGTGAGATTGAGCAAAGGTTGCTA----GTAGCTCGAGGCTCCAGGCTCGCA
TGTGATTTCCAATCTTGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCCTGCCCCTGTGGTGTTGAATCCATCC
ATCCA------TCGATCGATCAAACAAAACAAATGGTATGATAAGGGGGAGGGCACGCACGCACGCTGGCTGGCTGGCGC
GCACAAAGTGACACGACTAGGGTGTGTCCAACCGAACCCGAGGCCCGGGCCGAGCATGGCATAGGAGGAGAGAGTGGAGG
GGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGG---AGCAGATGCTT
AACGAATTTCTTTTTTCTTTTACAGCGTCGGCATCATCATCGTCA------ACAGCCTC---ACTGGCCCTGTGTGCCGA
GG----CAATTGAAAGCCGATACGTCAGCGGCGCCTAGCTCTAGAGTAAATATCTTTTCAGTGTCAGCTAAGCTAGCAGC
GTTCTCAGTGA---------------GTGGGCCGGGCGGGCTGCGTGGTGGC------TGCGAGAGATCGGATCCAACCA
CTTCG
>chr1A_148
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACTAC
AAGAGGGGGTGACCCACGAGGAAGCATGAGCTGGTAACACTCTATCTCATGTAATGCACGCTACATAGCCAAGTGAGGTA
CATAGTCGAAC--GGTACACGCGTATGTACTCCGACTATTCTGTCGTGTTGCGAGCATCATGTAACGGTACCTCCCCTTC
ATCGTGCCCCCGATCGCGGCGGTCTTTGCAGAATGATTTTATACAAAAACCAACACAGGGCAAATCCTCAATTAAAAACC
CCGAATGTGGATCTTGGAATTAAAGAAGCGCTTCAATGCTTGCTAGCAAACCTGCCATTTGCCACGAAGCAAATTGCAAT
CGAAATCAAAACGCTCATAATATCACCCCGAGACTCATTCCAACTCACCAAAAACAATCCAATCAGCCCGACGTTGCCAT
ACACGAGCCAGCCGAGGGCGATGAGCACATGCTG-----CTGC-------------GCTACTGCTGTCATGCAAATGTCG
TCTTCTCCGCGGCCATAAATCGAAATCGGGGGGCTGTTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCGCCGCCGTGAAA
AACCCCGATTTAACAGGCTTTTAAGGGA-------------------GTCCGGCCCAGCCATGGCAGCAGGCAGGCGAGG
GGCGGGGCCAGAGAAGAGTGGCAGCACTCAAAAAAAAAGAAGAGAAGAGTGGCTCTGGCTTTATTTACTCCTAAAGAATC
GTTCAGCCGAGCTTGA-----------------CCCCTCCCCTCTCTCTCCTCCACTCCGCTCCCCCTCCCTCCGCGATT
AAACCCTACTCTCTCTCTCCGCCTCGCGTCTTTTCTTTTCCGCCCCCACCCAGAGAAAAAATAATTCCGGGGGCGACGGC
CGCCGGAAACCCGTAGAATTCGTCCGGGGAG---------------GAGGAGGAGGGATTTCGTTTCGTTTTGGTCTGTT
TGTTTGTTTGGATTTGGATATGGAGGCGGCGGCCGAGTGCGCGGGCGGCGGCGGCGGCGG---CCTAAGGGAGGTCAAGA
AGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCGACGACCTCCTCGACCTGCCCTGCGACGACGACGAGGAGGAGGACGAC
GCCGCGGCGGCGGGGTTC---------------GCCGACGGGGCCGCGGACTGCAGCGCCGGCGAGGCCGGCGCCGTCGA
CGTCGGGAACGCGTCGGCCGACTCGTCCACGGTCACAGCCGTCGACAGCTGCAGCAACTCCCTCTCCGGCGGCCTCGCCG
ACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATCATT---------------------------------------
--------AATTCCTCTCCTTTTACCCTCCCGTCTCC--------------------ATTATTAATTCACGCGTTGTTCC
TTCCTTCGCTGCACGGATTTATGTATCAAATTTTGGCGAACAAACGAATTATTC----------------------ACGG
TCAATGCGTTCGTCTCCCTCCCCCCATTAACACTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCG---------------CCCCATGA
ATGAAGGCAGCTTTTGGAGTGACGTCTCCCGTAAATAGTAACCGATGAAACCCGCGGCCGG-------------------
----------AAATAGCAACCTCCTAAACGCTCCCC------------CCTTCTCCGGACACGGAAACGAATGATCGAC-
----CAATTTATTATCATTTCCGAGTTAATTCCGCGGCGCCCGTTTCGTCGCCATTGCTGAAAATCGTGTGCTGTGTGTG
TCTGTGGATTT--------GCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACAT------GGGCGACGAC
AACTTCCCCACCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCCTCGTCC---------------CA
GACGGCC---CCGCGCGCGCCCGCCGCCGCGCCGGTGCAGCCCTGTGGCGGTGGTGGCGCCGTCGGTACGGCCTTGTGGC
GCTCGGAGGCGCACGCCGGGCAGGTGTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGG
TCCTCCCGCCTGCTCGTGCTCCCGCCGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCGGCCGTCATCTCGCCGTCCGAGTC
CGGGAC---------GGCGTTCCCGCTCTTCCCGAACAAGAAGCCCGCCAAGTCGTCCAAGAAGAAGGAGGCGCCGGC--
----------------------------------CGCGCCCGCCATGACCGCCGCCGA---GGCCGCGGCCGCGGAGGGG
CGGCGGTGCCTGCACTGCGAGACCGACAAGACGCCGCAGTGGAGGACGGGGCCGCTGGGCCCCAAGACGCTGTGCAACGC
GTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTTGTGCCGTCCAAGC
ACTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACGCCCCGCCCCAGCAGCTGCTGCACCA-------
--------------------------------------------------GCCGCAGCAGCAGCAGCTGGGGCCGGGCCT
GGGGTTCCACGTGCCGAGCCCGCTGCTGTTCGACGGGCCGGCGGCGCCGCACCTTGGCGGCGGCGCGGACGAGTTCCTCA
TCCGCAACCGCATAGGGCCCGACCACCGGCAGCTCATCTAGCTTAGCT-AGCCAGCCAGCGCCGCCCAGCTCGCCTAGGA
GGAGGATCGTTCCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAAGAGCCAGCCAGCCCAGCCCAGCTAAAACTTTTT
TTTCCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCTACACTCT
CCGTGTTTCTCAGTCAGCTCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGCAGTTCCTTTGTTTTCCTTCCTTCT
CTCTCT-------------------------TTTTTCATAGAGTTTTTTCTTCATTTTCTTGTAATGCAGTCAGTGCAGG
CAGTGGTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAGCAGCAGCAAACAGCAACGAGCAGCAGTGTTTTTCTTT
GAAAGCAATTCTGCAAAAAGTAACTAGTAGTGAGATTGAGCAAAGGTCGCTTGCTGGTAGCTCGAGGCTCCAGGCTGGCA
TGTGATTTCCAATCATGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCC-----CTGCGGTGTTGAATCCATGG
ATGGATCGACCTCGATGGATCAAACAAAACGAATGGTATGATAAGGAC----GCACGCACGCACGCAC----GCTGGCGC
GCACAAAGTGACACGACTGGGGTGTGTCCAACCGTACCTCAGACCCAGGCCGGGCATGGCATAGGAGGGGAGAGTGGAGG
CGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGG---AGCAGATGCTT
AACGAATTTCTTTTTTCTTTTACAGCGTCGGCATCATCATCATCATCGTCAACAGTCTCACGACTGGCCCTGTGTGTCGA
CCGGGCCAATTGAAAGCCGATACGTCAGCGGCTCCTAGCTCTAGAGTAAATATCTTTTCGGTGTCAGCTAAGCTAGCAGC
GTTCTCAGTGACTGTGAGTGGGCCGTGTGGGCCGGGCGGGCCGCGTGGTGAC------TGCGAGAGATCGGATCCAACCA
CTTCG
>chr3D_1078
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----------------CGACCTCTTCGTCGTCGACGACCTCCTCTCGCTGCCGTGCGACGACGAGGAGGAGGAGGAGGAA
GGGGTCG------GCGAGGCGCCGTTCCTGCCGGCCAACGCCGCCGCCGTCATCGTCAAGCAGGAGGCCGGGT-------
--TCGGGAACGTGTCGGCCGACTCGTCCACCGTCACGGCCCTCGACAGCTGCAGCAACTCCTTCTCCGGC---CTCGCCG
ACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAAATTCTCCGTCCTTCTGCACCTTTTTCGTATCGCATCATCAATTG
TTCGTCGGAATTCTTCTCCGCTAATTAACTGAACGACTTTACGTTTTTTCCGTCCTTATTA---ATCTGTTCCATTTACA
CGA---------------------------------------------------GGAAATTCCATGGAAAAATGCATATA
CTACGGATTATTTAAGAGTGATTTCACAATATATATTCCGCAATTAAACCACTCCAAAAAATATCCTCCACAATTACGCA
TGAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TGCAGTTTTCTCTCGCAGAGAGAGTAACCGAAATAGGAAACAGCTGCCACGCGTAAATGGCACTGC
ACACTACCAAAAATAGCAGCTTTCGCGTTCAGCGCTAGCTGGACGCTTCCATATGCGCACAAGAATTCGAGTGGCTTTC-
----CAAGTTTTTAGCTTAATAATTATAGAGTTGTCGAAACGAAGCAAACTCACACGCATGCATGAGCTGTTGCTAATCA
AACTTGATGTGAATTGTGCGCAGTACGATCAGCTGGCGGAGCTGGAATGGCTGTCCAACTACATGGGCGAGGGCGAGGAG
AGCTTCGCCACCGAGGACCTACACAAGCTGCAGCTCATCTCCGGCATCCCCTCCGGCGGCTTCCCCTCGGCGAACGGGCC
GCCTGCT---CCGGCGGCAACCGCTGC---CACGGCGCAGCCCGGCGTGTTCCTGCCGGAGGGCC---------------
---------------------------CCGTCCCCGCCAAGGCGCGTAGCAAGCGCTCCCGCGTTGCGCCGGGCAACTGG
TCGTCCCGCCTGCTCGTTCTCCCGCAGGCCCCGGCCTCCCCGCCGTCCCCGGCGTCCATGGCCATCTCGCCGGCGGAGTC
TGGCGTCTCAGCCCAGGCGTTCCATGT---------CAAGAAGCCTTCCAAGCCGGCCAAGAAGAAGGAGGTGCCGCCGC
AGGCGCAGGCACAGGCTCAGGCTCAGTCAGTGAGCGCGCCCACAGCGCCCTCCGGCGTCACGGCGGCGGCCAACGAAGGT
CGGCGGTGCCTGCACTGCGAGACGGACAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCCAAGACGCTGTGCAACGC
GTGCGGGGTGCGGTACAAGTCGGGCCGGCTGGTGCCGGAGTACCGCCCGGCCGCGAGCCCGACGTTCGTGATGTCGAGGC
ATTCCAATTCCCACCGCAAGGTGCTGGAGCTCCGCCGCCAGAGGGA----------------------------------
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>SNPs
---------S----------------------S------S--S------S--S-S-S--SS---S----------S--SS
----S-----------S--S-S-----SS--------------S------------S---S-S----------------S
------------------S----------S-S-------------S-----S----------------------------
----------SSS-----------S------S--------S--S-S---------------S------------------
--S--------S---S---S------------S-------------S--S----------------S-------------
S-S-------------------------S---------------------------------------------------
----------------------------------------S----------------S----------------------
-S-----------------------------S--SSSSS-----------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------SSS-----S-S-------------------------------
--------------------------------------------------------------------------------
-------------SS----------------SS--------------------------------S--------------
-----------------------------------------------------S--------------------------
------S-SS--S------------S------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S---S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S------------------S------------------------------------------
----------S--S------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
---------------------------------S--------------SS---------------------SS-SS---S
SS----S------------------S--------------S-----S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---S-----------
-------------------------------------S------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SS--------S-----------S---
---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------S-----------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S--SS--S---------------
---------------S------SS------------------S-----S-------------------------------
------------------------------------------S-------------------------------------
---------------------------S-----S----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-S-SSS-------------------------
-------------------------------------------------------------------S------------
------------------------------------------------------------------SSS-----------
-------------------------------------------------------------S----------------S-
--------------------------------------------------------------------------------
----------------------------------------------------SSSSSS----------------------
-----
>forward_562
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--------------------------------------------------------------TCAGCCCGATGTTGCCAT
AG------------------------------------------------------------------------------
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>reverse_2979
--------------------------------------------------------------------------------
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------------------CAGCTCCTGCACCATTCTCA------------------------------------------
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>forward_894
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--------------------------------------------------------------------------AGAATC
GTTCAGCCGAGCTC------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_2982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTCCTGCACCATTCTCAGCA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_1614
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CGTTAT
TCCTTCGTCGCACG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_2983
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TCCTGCACCATTCTCAGCAC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_2964
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CCTGCACCATTCTCAG
CACA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_4215
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGAGTGCGAGAGATCGGATC------
-----
