>input_sequence_48076
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-------------------------------------------------------------------------GAATTTA
ACTGAGCACCACGTACGCGCCCGAGGCCCAGGCGCCTACCATCTTCACAAATCTACGTACACTTACGAACGA--------
-------------------------CCCGAGGGCCATGGCTGCATCGCCTTGTTCATTTCTGCTCTGGTTCGTTCTGCAG
AGACAGAGTAGCATTATACACTGGCCACAACGACACCCCCGCGGCATGACTGAAATCTGAACGCATCATCACCCTTAACA
CTCACGAATGTCCCGGGGAAACTGGTGGTGTGGGCGTGTGGTGGCACCTTTCGCGGGTCACCTACGCCAAAAAAAGAGAA
GCAAGTTGTGGCTAGAGTTGGAGGT-GGGGACGAAGCAGGAGAGGGGTAGTGGAC------GGGGCTTCGCTTCATCTGC
GAGGTAAGTTTCTCTCCGATCGTAAGAGGAGAAGGGCAGAGAGAAC----------------------------------
---------------AAAAATCTTGGAGAGTAGAACTCATGGACTTTGTAAGTTAGTATGCTTTTCTTTCTCCGTGAAGT
CATTGTATTCATGTAGGTAAAATGTCTTTTGAATTGTT--GGTTCATGTCATGAGGAAAGCATGCCGGAGATAAAATTGA
GAGGAAAAAAATGTAGAACTTGCTAGCTTTATGAATGAGAATTGTCAAGAAACATGTACAACAGCTTAATATTTGTTTTC
TACAGGATGTCATTCCCAGACGAATATCTGCTATTTCGCGCAGAAGGGAAGATTTGGAATGGACCTGACGGGGCGCAAGT
GAGTCCCGATTGCCCGTTTGTGGTCAAGCAGGTGGCGGAGCTGAAGAACAAATCGTTCGAACAAGTGCGGCGCGCGATCC
TGAAGAATTTTCAGTTGAACGAAGCAACACATGAACTCACTTTGCAGCACATCCTGTATGTGAGGACCGATCCTTCCGCT
CCTCCATACAATGTGCTGATTGACATAGTAGGCGAGGAATCATGGAGGGCATTTTTCAAGGTGGCATGCCGCCATGTCCG
CTCCTTCAAGCTCTTCGCCAAATGGACTGTCAAGAAGACAAGCTCTGCCTCCAATGCGACTGACAGCAATATCACAACAG
TTATTGACGAAGATACCGCCATAACAGATGACTCTGACGACGGTGGTTGGCCGGCTTGCAAGCACGATAAACCATGCACC
ATTGAAACTTCATGGGACCGACATGACCCGGGGCGAAGGTTCTACCGCTGCCCCTTCTTCGCTGTGAGTTTTCATGACTG
AATTTTTATCAGGGCGTACCTCGTCTCTGAATGATTTATGCTTCGATCCACAATGATATTCTTATTACTTATCAGAATCC
TAAAGAAGACTGCAAATTCACCAAATGGTTGGACAAGAAGTTTCCTGAGAAGGCAAACGAACTCATAAACAAATACCAGG
ACACGGTTGATTCACTCCAACAACAAGTCGACAACCTCAAGTGTGAGCTTGAGGAACTCCGTCGCCGTCATCGGAAAAGA
TCCGCAGAAGAAGTTGTTGTCAGTCATGGAGACAAGTGCCCCTGTGGCAAGAGCCTGTGCGACCTAACTTGTCGCGGCCG
GGAGAAACAGACACGCTCAGGCCAAATTTGA-------------------------------------------------
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--------------------------------------AATATTGAAGAAAAATAGGGA---------------------
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>chr2B_1_TraesCS2B01G441900
CCAGCCTCTCAAGCGCCCACGGACACGCCCCGCGGGCAATGACCGGGCACACCTCCCTCGCCTGGATCTGCTGCTGGATC
TCGTAGCGGCGCTCCGGCGTCAGCATGGCATAGTAGGTGATCTTGCTCCGGACCATGGCGGAGTGCCGGCGCGTGGGCAG
AGCTCCTGAGCGGGAGACGGAGGAGGTGAATGGGCTCGGACTGGCGGCGCAGAGAGGGGGGAGGGGGATGGGTTAGGGTT
GCGGGACGCCAGACGGATTAAGTAGCCAGATTTCGTCTTGGGCGGCGAGTTAGAGCGGTGTCACGCGGCGTCCGCACCGC
GGCGACGGACGGGGCGCCCGTCGGACCGCTGGGTTTCTGGGCGTTTGCGTGAGGGGCCACGCCGTCAGGCCTACGTGGCG
GGCATGCCCGGACA-CCTCATATCCGTCCCATATTTGGGCTGGATATGAGGGGTGCCGGTTAGCCCTAATGTCTGAGGGC
CGTTTGATAGGCCCGTCT-GAATCAAAAAATCGTGACTTGGAAGTGA--CCGGCCGACTCGCCCGAGCATATGACGCGGG
TTTATGCTCTAGCACTTGAAATGTAGACTGGAATCATGGTTTCCGAAAGGCAGTGTGGTATCGCGGAGGGCAGCGAGGTT
TTCTCTTCGGAGGCTTAACTCTGCTGGGATCAATCCAAATGATCTGGGAGAAGATGCCAACTAGCATGGACGGGCGGCGG
TAACTGGGTATGCGTATGTCTTTTTTAACATCAATACAAACACAAGCGCTTATATACATGCGTGTACACTCATTTCTATG
AACACACGCACGTACACCATAACCATATGAGCATCTTCGAGATATTACCCACTGAACGTGCATTGCCAGAATTTCCTGAA
ATAATTTAGGATAAATGCGAGCACCAAGACTTAAATTTTGGTGGGTTAAAAATATCATTGTCCTTCTAACTATCCAACCA
TAGGTTGATTCGTATATGCCTATGTGATCT-----------------------------GCGTGCAAGTCCAAGAATTTA
ACTGAGCACCACGTACGCGCCCGAGGCCCAGGCGCCTACCATCTTCACAAATCTACGTACACTTACGAACGA--------
-------------------------CCCGAGGGCCATGGCTGCATCGCCTTGTTCATTTCTGCTCTGGTTCGTTCTGCAG
AGACAGAGTAGCATTATACACTGGCCACAACGACACCCCCGCGGCATGACTGAAATCTGAACGCATCATCACCCTTAACA
CTCACGAATGTCCCGGGGAAACTGGTGGTGTGGGCGTGTGGTGGCACCTTTCGCGGGTCACCTACGCCAAAAAAAGAGAA
GCAAGTTGTGGCTAGAGTTGGAGGT-GGGGACGAAGCAGGAGAGGGGTAGTGGAC------GGGGCTTCGCTTCATCTGC
GAGGTAAGTTTCTCTCCGATCGTAAGAGGAGAAGGGCAGAGAGAAC----------------------------------
---------------AAAAATCTTGGAGAGTAGAACTCATGGACTTTGTAAGTTAGTATGCTTTTCTTTCTCCGTGAAGT
CATTGTATTCATGTAGGTAAAATGTCTTTTGAATTGTT--GGTTCATGTCATGAGGAAAGCATGCCGGAGATAAAATTGA
GAGGAAAAAAATGTAGAACTTGCTAGCTTTATGAATGAGAATTGTCAAGAAACATGTACAACAGCTTAATATTTGTTTTC
TACAGGATGTCATTCCCAGACGAATATCTGCTATTTCGCGCAGAAGGGAAGATTTGGAATGGACCTGACGGGGCGCAAGT
GAGTCCCGATTGCCCGTTTGTGGTCAAGCAGGTGGCGGAGCTGAAGAACAAATCGTTCGAACAAGTGCGGCGCGCGATCC
TGAAGAATTTTCAGTTGAACGAAGCAACACATGAACTCACTTTGCAGCACATCCTGTATGTGAGGACCGATCCTTCCGCT
CCTCCATACAATGTGCTGATTGACATAGTAGGCGAGGAATCATGGAGGGCATTTTTCAAGGTGGCATGCCGCCATGTCCG
CTCCTTCAAGCTCTTCGCCAAATGGACTGTCAAGAAGACAAGCTCTGCCTCCAATGCGACTGACAGCAATATCACAACAG
TTATTGACGAAGATACCGCCATAACAGATGACTCTGACGACGGTGGTTGGCCGGCTTGCAAGCACGATAAACCATGCACC
ATTGAAACTTCATGGGACCGACATGACCCGGGGCGAAGGTTCTACCGCTGCCCCTTCTTCGCTGTGAGTTTTCATGACTG
AATTTTTATCAGGGCGTACCTCGTCTCTGAATGATTTATGCTTCGATCCACAATGATATTCTTATTACTTATCAGAATCC
TAAAGAAGACTGCAAATTCACCAAATGGTTGGACAAGAAGTTTCCTGAGAAGGCAAACGAACTCATAAACAAATACCAGG
ACACGGTTGATTCACTCCAACAACAAGTCGACAACCTCAAGTGTGAGCTTGAGGAACTCCGTCGCCGTCATCGGAAAAGA
TCCGCAGAAGAAGTTGTTGTCAGTCATGGAGACAAGTGCCCCTGTGGCAAGAGCCTGTGCGACCTAACTTGTCGCGGCCG
GGAGAAACAGACACGCTCAGGCCAAATTTGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AATATTGAAGAAAAATAGGGAAAAAAGGAAAATGACATGAAA
ATTTGAAAAACCTGGAGCATTATGAAAGTGTTATTGAAAATCTAATAGTAGTAAACGATGGGGAAGAAAAGTAAAAAAGA
AACCTTTGAATCTATGTAAACCCATAGTCCAAATATTTGTGGAAGCTGTTTGGTCTTAAAATGTAAATATTATTTACTTG
TA---TTTTTCTTGAATATTATTTGTTTACTCAATTTTGTTTTGGTTTCCTTGATGTTTTCTATATTTTTATTGGTTGAG
CTACCACGTGTTCACAACATCGAGTCATCTTGCACTTGAAAGACCAGAAATATTCAGAATGCATTAGAGGGTCAAACTTA
CAGTTTGGCAACATATAAGGGAACAAAATATGACATTTTTCTCAAGCAATTGCATCAATAACAATAGCCAAAAAGAAATA
GCGCGCATGTCTTACTGAACAAATTATCTTAA-TAGGCCCCTCGAAAAACTAGCTAACATAATGCTCCCATTTATATTTA
TTTTTTGAGGAATGAACCAAGGGTTACC-CACTTGAATAATATTTCCATGAGCATGCACACGTGAATTAATCTACACTTG
CCTCATCTCGTAGAGCACCGGGGTTTTTCTGGACAGATACTACCATTCCAATTT-CACTGTAGAAATTGCTAGTGCAATG
CTCTGCTAAAAACCACCATCTAATGCTCCTAGCATGGTGAGTTTCCTTGCCCTCTGAGATTAATATGTGCCTTCTCCTTA
CTTTTTTTTTTCAAAACGGAGGCATAAGCTTTGCCTCATCTATTAATTAAGAAGAAGAATAGAGTTTGTTTGTTACACCA
CACATATTATATGAGGTCCATTACTCTCCCGGCATTATGCTACCCAATTTGTGTGCACCCGCAGTAACCCAAAGTCTAGC
TTCTCTTTTGATGGTGTCGAAGATGACCGGCGCAGGTGTTGACTTGTGCCTGAATATACGAGCGTTTCTCTCATTTCAAA
TGGTCCACCCAACTAGCATAGTGAG
>chr5B_54
-----------------------------------------------------TCCCTCGCCCTGATCTGTTGCTGGATC
TTGTAGCGGCACTCTGGTGTCAGCATGGCATAGTACATGATCTTGCTCCGGACCATGGCGGAGTGCGGGAGCGTGGGCAG
AGCGCTAGAGCGTGAGAGGAAGGTGGTGGATGGGTTTGGACTGGTGGCGCTGAGAAGGGGAAGGGGCATGGGTTAGGGTT
GCGGGACGCCGTCCGGCTTAAATAGCCGAATTTCGTCTTGGCCGGCGAGCCC-AGTGGCGCCACACGGCATTCACACCGC
ATCGACAGATGCGGCGTCCCTTGGACCACCCGTTTTCTCGGCGTTTCCGTGGCGGGCCATGCCGCCAGGCCGACGTGACG
GGCGTGCCCGCGCG-CCCCATATACGCCCCATATTTGGGTTGGATATG-GGGGTGCCGGTCAACCCGGTCATTTGAGGGC
CATTTGAGTGGCCCGTCG-GGATCAAAAAATCATGACTGGACGGCTCACCCGGGCGGCCCGCCCGAGCGTATGAGGTGAG
TTTA----------------------------------------------------------------------------
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>chr5B_57
--------------------------------------------------------CTCGCCCGGATCTCCTGCTGGATC
TCGTAGCGGCGCTCCGGCGTGAGCATTGCGTAGTAGGTGATCTTCCTCCGGACCATGGCGGAGTGCCGAAGCATGGGCAG
TGCATCGAAGCGGGAGAGGTAGGAGGTGGATGACCTCAGACTGGCGGCACGGAGA-GGAGGGGGTGGATGGACTAGGATT
GCGGGACTCAGGCCGGGTTAAATAGGCGGATTTTCTCTCGGGCGGCGAGCCAGAGCGGTGCCATGCGGTGTTCACACCGC
GGCGACGGAGGAGGCGTCCGTCGGACCGCTGGGTTTCCGGGCGAGTCCGTATGGGACCCCTTCGTTAGTCTTACGTGGCG
GACGTGCCCGCGCGCCCCCATATCCGCCCCATATTTGGGCTGGATATGAGGGGTGCCGGTCAGTCCGGGCGTTTGAGGCC
CGTTTGAGGGGGCTGTTTGGGGTCAACAAATCGTGATCGTTCAGTGA--CCGGGCGGACCGCCCGGGCTTATAAGGCGGG
TTT-----------------------------------------------------------------------------
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>chr2D_618
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-------------------------------------------------------------CGCGGAGGGCAGCGGGGTT
TTCTCTTGAGAGGCTTGACTCCGCCGGGATCGAGCCATATGGTCTGGGAGAAGATGCCAACTAGCATGGACCGGCAGCGG
GCGTCGGCCACGAGGCGGCTCCATCGCCTGCGCGTGACGGCGCAGCGGAGGAGGTCCTGGCCGTCCGGCAGGCGCGCGAA
GACCTCGCGGGGGACGTCGTCGGCGATCTGATCTGGCCGCCGGAGCCTATGGGCGGATTGGCCATCGGCCGATGCATGGA
TGGATCCGTGGATAATGTGCTAGCTGATGGAGGGGCTGGTATGCTCCACGACAATTCACGATTGATACCGAGGAACTTTA
CCAATACCGAATCCCGATCTTATCTTGTCCGTTAAACGCAACGGCTGCGCGGTAACAGGGCATGCAAGTCCAGGAATTTA
AGCGAGCACC---------------------------ACCATCTTCACAAATCTACGTCACGGGCGTATGCGACGAGTGA
CGGACGACCCATACGCGGACGGACGCCCGAGGGCAATGGCTCCATCGCCTTGTTCATTTCTGCTCTGGTTCATTCTGCAT
GTATAGACCCATCG-------------CAACGACACCCCCGCGGCATGACAGAAATCCGAACGCATCATCACCCTTAAAA
CTCACGACTGTCCCGGGGGAACTGGTGGT-----------GTGGCACCTTTCGCGGGTCACCTGCGCCAAAAAAAGAGAA
GCAGGCTGTGGCTAGAGTTGGAGGTGGGGGACGGAGCAGGAGAGGGGTAGTGGACCTGGAGGGGGCTTCGCTTCATCTCC
GAGGTAAGTTTCCCTCCGATCGTCATCACTCTGCGCTGTTTTTTTCCGATAAAGGGTGGATTTTATTGACTCGAAATGAA
GCATCAAGTGGATATAAAAATCTTGGAGAAAACAACTCATGGACTTTGCAAGTTA-------------------------
----GTATGCATGTAGGTAAAATGTCTTTGAATTGTGATAGGTTCATGTCATAAGGAAAACAAGGAACT-----------
---------------------------------------------------------------GCTTAATATTTGTTTTC
TACAGGATGTCATTCCCAGACGAATATCTGCTATTTCGCGCAGAAGGAAAGATTTGGAATGGACCCGATGGGGCGCAAGT
GAGTCCCGATTGCCCATTTGTGGTCAGGCAGGTGGCGGAGCTGAAGAACAAATCGTTCGAACAAGTGCGGCACGCGGTAC
TCAAGAATTTTCAGCTCAACGAAGCCACACATGAACTCACTTTGCAGCACATCCTGTATGTGAGGACCGATCCTTCCGCT
CCTCCATACAATCTGCTGATTGACATAGTAGGCGAGGAATCATGGAGGGCGTTTTTCAAGGTGGCATGCCGCCATGTCCG
CTCCTTCAAGCTCTTCGCCAAATGGACCGTCAAGAAGACAAGCTCTGCCTCCAATGCGACTGACAGCAATATCACAACAG
CTCTAGACGAAGATCCCGCCGTAACGGATGAATCCGATGATGGGAGCTGGCCGGCTTGCAAGCACGATAAGCCATGCACC
ATTGAAACTTCGTGGGACCGACAAGACCCGGGGCGAAGGTTCTACCGCTGCCCCTTCTTCGCTGTGAGTTTTCATGAGTG
AATTTTTGTCGGCCGTAACTCGATCTCTGAATGATTTACGCTTCGATCCACAATGACATTCTTATTTCTTGTCAGAATCC
TAAAGAAGACTGCAAATTCACCAAATGGTTGGACAAGAAGTTTCCTGAGAAGGCAAACGAACTCATAAACAAATACCAGG
ACACGGTTGATTCACTCCAACAGCAAGTCGACAACCTCAAGTGTGAGCTTGAGGAACTCCGTCGCCGTCATCGGAAAAGA
TCCGCCGAAGAAGTTGTTGTCATTCATGGAGACAAGTGCCCCTGTGGCAAGAGCCTGTGCGACCTAACTTGTCGCGGCCG
GGAGAAACAGACACGCCCAAGCCAAACACCAAGATTGGCCAGGGACAATTAGTCGCCAATATGCAGAGTGGTTTGTAGAG
CTGTTTTGATGATGACGTGATGGCTGGTTTTGCCCAGTTAGCACAAAATTTGAAAAGAAACAGATTTTTTGTGTAAATTA
AAAATCAGAACATTAACAAGGAAATTCAAGAGAATTTGAATATTGAAGAAAAA-------AAAAGGAAAATGGCATGAAA
ATTAGAAAAACCTGGAGCATTATAGAAGTGGTATTGAAAATCTAATAGTAGTATACGATGGAAAAAAGT----AAAAAGA
AACCTTTGAATCTATATAAACCCATAGTCAAAATATTTATGGAAGCTGTTTGGTCTTAAAACGTAAATATTATGTACTAG
TATTTTTTTTCTTGAATATTATTTGTTTACTCAATTTTGTTTTGGTTTCTTTGATGTTTTCTATATTTTTATTGGTTGAG
CTACCACGTGTTCACAACATCGAGTCATCTTGCACTTGAAAGACCAGAAATATTCAGAATGCATTAGAGGGCCATACTTA
CAGTTTGGCAACATATAAGGGAACAAAATATGATATTTTTCTCAAGCAATTGCATCAATAACGATAGCCAAAAAGAAATA
GCGTGCATGTCTTACTAAACAAATTATCTTAATTAGGCCCCTCGAAAAACTAGCTAACAGAATGCTCCCATTTATATTTA
TTTTTTGAGGAATGAACCCAGGGTTACCTCACTTGAATAATATTTCCACGTGCGCACACACGTGAACTAATCTACACTTG
CCTCATCTCGTAGAGCACCGGGGTTTTTCTGGACAGATTCTACCATTACAATGTCCACTGTAGAAATTGCTAGTGCAATG
CTCTGCTAAAAACCACCATCTACTGCTCCTAGCATGGTGAGTTTCCACACCCTCA-AGGTTAATTTGTGCCTTCTCCTTA
CTCTT---------------------------------------------------------------------------
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-------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------------
---------------------------------------------------------------------S----------
---S--S----------S-S--------S---------------------S----S------------------------
----------S-S---S----S-----S---------------------SS---------S----------S-S------
---------S-S----S-----------------------------S----S----------------------------
---S------SS-S---S--------S---------------------------------S-----SSSS--S-------
-------SS-----------S-----------------S-SS-----------S--S-S---------S-----S-----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S----
-------SS-------S----S--S------S-S---S---S-----------------------------S---S----
SSSSS--SS-S-S-SSS-SSSSS-SSSSSSSSSS-SSSSS-S--SSS-SSS-SS-S-SS--SSSSSSS-SSSSSSSSSSS
S--SSSSSSSS-S--SS-S-SSS-SSSSSSSSS-SSS--SSSS-SSSSSSSSSSSSSS--SSSSS-SSSSSS-S-S--S-
SSS--SSSS-SSS----S-SSSS-SS-SSSSSSSSS-SSSS--SSSS-SS-SS--SSSS-SSSSSSSSSSSSSSSSSSS-
SSSS-SSSSSSSSSSSSS-S---S-SS--S-------------------------------S----------S-------
-SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------SSSSSSSSS-SSSS--------
----------------------------------S------S-----------------------------S-------S
SS-S---SSSSSSSSSSSSSSSSSSSS-----------------------S------S--------------------S-
-------S----------S----------SSSSSSSSSSS-----------------------S----------------
---S-S---------------------------S--------------------------------------------S-
------------S----------S-SSSSSSSSS-SSSSSSSSSS-----------------------------------
-----------------------------SS-S---------------S------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----S--------------------SS-S-SSSS--------------S------S--S-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-----------------------------------------------S-----------------S--S-----------
---------------S----------S--------------------------------------------S----S-S-
-S------------S-S--------S------------------------------------------------------
------------S-------------------------------------S-----------------------------
---------------------------S----------------------------------------------------
S-S-S---------S-----S----S-----S--S--S--S--SS-S-----------------------S---------
-----------S-----------S-----------------------------------------------------S--
-------S--S-SSSSS--SSSS---------------S-----------------S---------S---S---------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----S----------------S---------------------------------------------------------
----------------S--S------SSSS--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SSSSSSS------------S-------
---S-------------------SS-----S----------------------S-------SS--S-SSSSSS-------
---------------S-------------S--------S----------------------S-----------S----S-
-------------------------------------------------S------------------------------
-----------------------------------------------------------------------S--S-----
---------------------------------S----------------------------S-----------------
---S------------S------------------------------------------S--------------------
------------------S-----------------------------S-S--SSS----------S-------------
--------------------------------------S--------S----S---------------------------
----------------------S-----------------------SSS-----SS--S-----S---------------
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_736
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----------------------------------------------------------------------------GCGG
TAACTGGGTATGCGTA----------------------------------------------------------------
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>reverse_1856
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---------------GTTTGTGGTCAAGCAGGTGG---------------------------------------------
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>forward_1672
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----------------------------------------------------GAGGAAAGCATGCCGGAGAT--------
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>reverse_3738
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---------------------------------------------------------CCCGCAGTAACCCAAAGTCT---
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