CLUSTAL X (1.81) multiple sequence alignment input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TTAGTATCAACAACAAACACCACCTCTTTTTTTTCTTATTCTAAAATTAC chr5A_1 TTAGTGTCAATAGCAAACATCACCTCTCTTTTTTTCTATCCGAAAATTAC chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -----S----S-S------S-------S------SS---S-S-------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CATTGATTTTCTCTTTTCTCATCCTCTTCCTCCTATCCTGCTCAGTTGGT chr5A_1 CATTGATTTTCTCTTTTCTCATCCTCTTCCTCCTATCCTGCTCAGTCGGT chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TGTCTTCCAAGCTGCACGGCCGGCTGCGTGGCCTCACCTGACTGAATCAC chr5A_1 TGTCTTCCAAGCTCCACGGCTGGCTCCGTAGCCTCTCCTGACTGAATCAC chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------S------S----S---S-----S-------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CACACACTATCTTAATTACTGC---------------CATGCCACCCTCT chr5A_1 CACACACTATCTCAATTACTGCTGCCGCCTCCTCCTGCATGCCACCCTCT chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ------------S------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 AACCGGAGATATGAGTTTCTTCTCCGGCCCCGGTGTCCCACCCCAAACCT chr5A_1 AGCCGGAGACATGAGTTTCTTCTCCGGCCCCGGTGTCCCACCCCAAACCT chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -S-------S---------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TAAACTCTTCACCACAACCTAAAACCTCCACTCTCGCCTCCGTCTTAGAC chr5A_1 TAAAATCTTCACCACAACCTAAAACCTCCAGTTTCTTCTCCGCCCCCGGA chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ----S-------------------------S-S--SS-----S-SSS-SS forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TCGGTCCATACTCGCCGCTGTCGTCGCACGCAACTCCATGCCAATGCTAT chr5A_1 ATCAAAACGAAAAGGCCCACCACCCGCACCTGTTAACTCTCAAACTCGCC chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs SSSSSSSSS-SSS-S-S-SSSSSS-----SSSSSSS-SSS-S--SS-SSS forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CTCTGCCTTGATGCACACCATCGAGTAGCCAGAGGTTGAGGTTGATGGCG chr5A_1 TCCGGATGCGACGCCGCGGCGAGCCATGTCATCACGGCCATTCCTGGCTG chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs SS-S-SSSS--S--SSSSSSSS-SSSS-S--SSSSSSSSSS-SSSS-SS- forward_386 ----------------ACCATCGAGTAGCCAGAGGT-------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------GAGGTTGAGGTTGATGGCG reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TATTAATAAAGAGGAAAAAAAAGATAGTTGCATGTTGTCTAGCAAATAAA chr5A_1 GGCCTCACCTGGGTCCCAGCATCTCTCTGCCGCTCGCTGTGGCGCCCCCC chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs SSSSSSSSSS-S-SSSS-SS-SSSSSS-SS-SSSSSS-S-S--SSSSSSS forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 T------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TGCGAAGATAAGTATTGGGATCGACTATTAGTAAGTTGCCTGGAAAAAAA chr5A_1 TCTTTCCGGCCTTGCCTCCTCCTTCCTTTCCCGCAAAAATGGACCAGTCC chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -SSSSSSSSSSS-SSSSSSSS-SS-SS--SSSSSSSSSSSS-SSS-SSSS forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 T------------------------------------------------- chr5A_1 AATGCAAATTCAGTTAACTTACATAGAAGATAGAACTATTGTGGTAAATA chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs S------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -----------TGGCGTCATGCATCCTCAGCACTCACCAAC-----ACCA chr5A_1 TTAGGAGTACATGGCGTCATGCATCCTCAGCACTCACCAACGCAACACCA chr5A_487 -----------TGGCGTCATGCATCCTCAGCACTCACCAACGCAACACCA chr5B_492 ----------------TCATGCATCCTCAGCAGTCAGCAAA-----ACCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TGTCGTCACCCATGCTTCGATTTGCCGACGACT----------------G chr5A_1 TGTCGTCACCCATGCTTCCATTTGCCGACGACTGAACATGTCACCGGCCG chr5A_487 TGTCGTCACCCATGCTTCCATTTGCCGACGACTGAACATGTCA----CCG chr5B_492 TGTCGTCACCCATGCTTCGATTTGCCGACCACTGGCCGTGTCA----CCG chr5D_551 ------------------------------------------A----CCG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 GCCTACCTCGTCTCTGTTCTATACTCGGCTGTCAGTCTC-AGAGATGCAA chr5A_1 GCCTGCCTCGTCTCTGTTCTATACTCGGCTGTCAGTCTC-AGAGATGCAA chr5A_487 GCCTACCTCGTCTCTGTTCTATACTCGGCTGTCAGTCTCAAGAGATGCAA chr5B_492 GCCTGCCTCGTCTGTGTTCTATACTCGGCTGTCAGTCTC-AGAGATGCAA chr5D_551 GCCTACCTCGTCTCTGTTCTATACTCGGCTGTCAGTCTC-AGAGATGCAA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TCCATGAGCTTAAAACAGCGACGGAGATTTTTGCAATCAACAATCGGAGC chr5A_1 TCCATGAGCTAAAAACAGCGACGGAGCTTGGCGATTGGCT---------- chr5A_487 TCCATGAGCTAAAAACAGCGACGGAGATTTTTGCAATCAACAATCGGAGC chr5B_492 TCCATGAGCTAAAAATAGCGACGGAG----TTGCCATCAACAATCGGAG- chr5D_551 TCCATGAGCTTAAAACAGCGACGGAGATTTTTGCAATCAACAATCGGAGC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ATCATCTTGGCTTTTGGCCACAAAGTAGAGACTGAACGAGCCAATTCCGC chr5A_1 ----------------------------AGACTGAGCTTGGCGATTCCCA chr5A_487 ATCATCTTGGCATTTGGCCACAAAGTAGAGACTGAACGAGCCAATTCCGC chr5B_492 --CATCTTGGCATTTGGCCACAAAGTAGAGACTG---------------- chr5D_551 ATCATCTTGGCTTTTGGCCACAAAGTAGAGACTGAACGAGCCAATTCCGC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ATTTGCCACTGCCTTGAGAGTTAAGTAACTCCGTTTCCTTGGACTGTTCC chr5A_1 TTTTGCCACTGTCTTCAGAGTTAAGTAACTCCGTTTCCTTGGACAGTTCC chr5A_487 ATTTGCCACTGCCTTCAGAGTTAAGTAACTCCGTTTCCTTGGACTGTTCC chr5B_492 -----------CCTTGAGAGTTAAGTAACTCCGTTTCCTTGGACTGTTCC chr5D_551 ATTTGCCACTGCCTTGAGAGTTAAGTAACTCCGTTTCCTTGGACTGTTCC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ATCGA----CGCCCGCCGCTTCTTCTCGCCTCCGACAGCTCCTCCTCACC chr5A_1 ATCGA----CGCCCGCCGCCTCTTCTCGCCTCC------------TCACC chr5A_487 ATG-ACGCTCGCTCGCCGCTTCTTCTCGCCTCCGACAGCTCCTCCTCACC chr5B_492 ATCTACGCTCGCTCGCCGCTTCTTCTCGCCTCCGACAGCTCCTCCTCACC chr5D_551 ATCGA----CGCCCGCCGCTTCTTCTCGCCTCCGACAGCTCCTCCTCACC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TGCTCCCACGCAGACGGCGACGACGACGAAGACGACAACGGCGA------ chr5A_1 GGCTCCAACGCAGACGGCGACAACGACG---------------A------ chr5A_487 TGCTCCAAGGCAGACGGCGACGACGACGA------------CGA------ chr5B_492 TGCTCCCACGCAGACGGCGACGACGATGA------------CGACAACGA chr5D_551 TGCTCCCACGCAGACGGCGACGACGACGA------------AGACGACAA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -----------------------------SSSSSSSSSSSS--------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ------CGACTACACGTTGCTTAGCTTCAACCTAAGCAGATCACCG---- chr5A_1 ------CGACTACACGTTGCTTAGCTTCAACCTAAGCAGATCACCA---- chr5A_487 ------CGACTACACGCTGCTCAGCTTCAACCTAAGCAGATTACCG---- chr5B_492 CA---ACGACTACACGCTGCTCAGCTTCAACCTAAGCAGATAACCGGTTC chr5D_551 CGGCGACGACTACACGTTGCTTAGCTTCAACCTAAGCAGA--------TC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ----CACGAATCATTGGCATTATATATATG--CGTCCAGGTCGAGCTACA chr5A_1 ----CACGAATCATTGGCATTATATATATG--CGTCCAGGTCGAGTTACA chr5A_487 ----CATGAATCATTGGCAGTATATATATGTGCGTCCTGGTCGACCTACA chr5B_492 ACCACACGAATCATTGGCATTATATATATGT--GTGCAGGTCGAGCTACA chr5D_551 ACCGCACGAATCATTGGCATTATATATATG--CGTCCAGGTCGAGCTACA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 GCCTTCCATCGGGACAAGACCGCCCTAGACACAACATCAAGTTGACGTCC chr5A_1 GCTTTCCATCGGCACAAGAC----------ACAACAACAGCAGGAGGTCC chr5A_487 GCTTTCCATCAAGGCAAGACCGCCCAAAGACGCACAGCATCATCTTCCTC chr5B_492 GCTTTCCATCGGGACAACACCAAG-----------------AGGACGTCC chr5D_551 GCCTTCCATCGGGACAAGACCGCCCTAGACACAACATCAAGTTGACGTCC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 ----------------------------------ATGATGGTGGAGAGGT chr5D_1_TraesCS5D01G004700 AGTTG-----------CAGCAAGCAACGGCGGCGATGATGGTGGAGAGGT chr5A_1 AGTTG-----------CAGCAAT----GGCGGCAATGATGGTGGAGAGGT chr5A_487 TGTCCAGGTCCAGGCCCAGCCAT----GGTGGCGATGATGGTGGAGAGGT chr5B_492 AGTTG-----------CAGCAAT----GGCGGCAATCATGGTAGAGAGGT chr5D_551 AGTTG-----------CAGCAAGCAACGGCGGCGATGATGGTGGAGAGGT chr5D_1003 ------------------------------------GATGGTGGAGTGGT chr7D_1005 --------------------------------------TGGTGGAGAGGT chr7B_1005 --------------------------------------TGGTGGAGAGGT chrUn_1005 --------------------------------------TGGTGGAGAGGT chr7A_1007 ----------------------------------------GTGGAGAGGT chr7A_1007 ----------------------------------------GTGGAGAGGT chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GGGCAGGGTTCGGGTCGGCGATGGCGACCGTCATCTTCCTCTGGTCCGTT chr5D_1_TraesCS5D01G004700 GGGCAGGGTTCGGGTCGGCGATGGCGACCGTCATCTTCCTCTGGTCCGTT chr5A_1 GGGCAGGGTTCGGGTCGGCGATGGCGACTATCATCTTCCTCTGGTCCGTG chr5A_487 GGGCAGGGTTCGGGTCAGCGGCGGCGACCGTCATCTTCCTCTGGCCCGTG chr5B_492 GGGCGGGGTTCGGGTCGGCTATGGCGACCGTCATCTTTCTCTGGTCCGTG chr5D_551 GGGCAGGGTTCGGGTCGGCGATGGCGACCGTCATCTTCCTCTGGTCCGTT chr5D_1003 GGCCATGGTTCGGATCGGCGGTGGCGAGCACCATCTTCCTATGGTCCATG chr7D_1005 GGGCGGGGCTCGGATCGGCGGTGGCGACCGTCATCTTCCTCTGGTCCGTG chr7B_1005 GGGCGGGGCTCGGATCGGCGGTGGCGCCCCTCATCTTCCTCTGGTCCGTG chrUn_1005 GGGCGGGGCTCGGATCAGCAGTGGCGACCGTCATCTTCCTCTGGTCCATG chr7A_1007 GGGCGGGGCTCGGATCGGCGGTGGCGACCGTCATCTTCCTCTGGTCCGTG chr7A_1007 GGGCGGGGCTCGGATCGGCGGTGGCGACCGTCATCTTCCTCTGGTCCGTG chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GTGCAGAACTACGTCCCTCCCACCTTCCGCCTCTACCTCACCGCCTGGGC chr5D_1_TraesCS5D01G004700 GTGCAGAACTACGTCCCTCCCACCTTCCGCCTCTACCTCACCGCCTGGGC chr5A_1 GTGCAGAACTACGTACCGCCCACCTTCCGCCTCTACCTCACCGCCTGGGC chr5A_487 GTGCAGAAATACGTGCCCCCCACCTTCCGCCTCTATCTCACCGCCTGGGC chr5B_492 GTGCAGAACTACGTACCTCCCACCTTCCGCCTCTACCTCACCGCCTGGGC chr5D_551 GTGCAGAACTACGTCCCTCCCACCTTCCGCCTCTACCTCACCGCCTGGGC chr5D_1003 GTGCAGAACCACATCCCGGACGCCCTCCGCCTCAACCTCGCCGCTTTGGC chr7D_1005 GTGCAGAACTACGTGCCCCCCACCTTCCGCCTCTACCTCACCACGTGGGC chr7B_1005 GTGCAGAACTACGTGCCCCCCACCTTCCGCCTCTACCTCACCACTTGGGC chrUn_1005 GTGCAGAACTACATGCCCCCCACCTTCCGCCTCTACCTCACCACCTTGGC chr7A_1007 GTGCAGAACTACGTGCCCCCCACCTTCCGCCTCTACCTCACCACCTGGGC chr7A_1007 GTGCAGAACTACGTGCCCCCCACCTTCCGCCTCTACCTCACCACCTGGGC chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CGCCAAGGTCGCCGCCTGCTTCAACCCCTACCTGCAGATCACCATCTCCG chr5D_1_TraesCS5D01G004700 CGCCAAGGTCGCCGCCTGCTTCAACCCCTACCTGCAGATCACCATCTCCG chr5A_1 CGCCAAGGTCGCCGCCTGCTTCAACCCCTACCTCGAGATCACCATCTCAG chr5A_487 CGCCAAGCTCGCCGCCTGCTTCAACCCCTATCTGCAGATCACCATCTCCG chr5B_492 CGCAAAGGTCGCCGCCTGCTTCAACCCCTACCTCCAAATCACCATCTCCG chr5D_551 CGCCAAGGTCGCCGCCTGCTTCAACCCCTACCTGCAGATCACCATCTCCG chr5D_1003 CGCCAAGCTCACCGCCTACTTCAACCCTTACCTCCAGATCACCATCTCGG chr7D_1005 CGCCAAGCTCGCTGCCTTCTTCAATCCCTACCTCCAGATCACCATTTCCG chr7B_1005 TGCCAAGCTCGCAGCCTGCTTCAATCCGTACCTCGAGATCACCATTTCCG chrUn_1005 CACCAAGCTCGCAGCCTGCTTCAACCCCTATCTCCAGATCACCATCTCCG chr7A_1007 CACCAAGCTCGCAGCCTGCTTCAACCCCTACCTCCAAATCACCATCTCCG chr7A_1007 CACCAAGCTCGCAGCCTGCTTCAACCCCTACCTCCAAATCACCATCTCCG chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 AGTACGGCGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr5D_1_TraesCS5D01G004700 AGTACGGCGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr5A_1 AGAACGGGGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr5A_487 AGTACGGCGCGGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr5B_492 AGTATGGCGCCGAGCGCTTCCAGCGTAGCGACTTCTTCCTCGCCGTTGAG chr5D_551 AGTACGGCGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr5D_1003 AGAACGGCGCCCAGCGCTGGAAGCGAAGCGAACTCTTCCTCGCCGTCGAG chr7D_1005 AGTACGGCGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTTGCCGTCGAG chr7B_1005 AGTACGGCGCCGAGCGCTTCCAACGCAGCGACTTCTTCCTCGCCGTCGAG chrUn_1005 AGTATGGCGCCGAGCGCTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr7A_1007 AGTATGGCGCCGAGCGTTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr7A_1007 AGTATGGCGCCGAGCGTTTCCAGCGCAGCGACTTCTTCCTCGCCGTCGAG chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCCTACCTCAGCGACGCCTGCGCCCGCCGCGCACGCAAGCTCAAGGCCGA chr5D_1_TraesCS5D01G004700 GCCTACCTCAGCGACGCCTGCGCCCGCCGCGCACGCAAGCTCAAGGCCGA chr5A_1 GCCTACCTCAGCGATGCGTGCGCCCGCCGCGCACGCAAGCTCAAGGCCGA chr5A_487 GCCTACCTCAGCGACGCCTGCGCCCGCCGCGCACGCAAGCTCAAGGCTGA chr5B_492 GCCTACCTCAGCGAGGCATGCGCCCGGCGCGCACGGAAGCTCAAGGCCGA chr5D_551 GCCTACCTCAGCGACGCCTGCGCCCGCCGCGCACGCAAGCTCAAGGCCGA chr5D_1003 GCCTACCTGAGCGACGCATGTGCCCGTCGCGCGCGCAGGCTCAAAGCTGA chr7D_1005 GCCTACCTCAGCGATGCCTGCGCCCGCCGCGCGCGCAAGCTCAAGGCTGA chr7B_1005 GCCTACCTCAGCGATGCCTGCGCCCGCCGTGCACGCAAGCTCAAGGCCGA chrUn_1005 GCCTACCTCAGCGACGCCTGCGCCCGCCGTGCACGCAAGCTCAAGGCCGA chr7A_1007 GCCTACCTCAGCGATGCGTGCGCCCGCCGCGCGCGCAAGCTCAAGGCCGA chr7A_1007 GCCTACCTCAGCGATGCGTGCGCCCGCCGCGCGCGCAAGCTCAAGGCCGA chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCTCGTCAAGGACAGCAAGAACCTCCGGGTCACCGTCGACGACCACGAGG chr5D_1_TraesCS5D01G004700 GCTCGTCAAGGACAGCAAGAACCTCCGGGTCACCGTCGACGACCACGAGG chr5A_1 GCTCGGCAAGGACAGCAAGAACCTCCGAGTCACCGTTGACGACCACGACG chr5A_487 ACTCGTCAAGGACAGCAAGAACCTCCGGGTCACCGTCGACGACCACGAGG chr5B_492 GCTCGGCAAGGACAGCAAGAACCTCCAGGTCACCGTCGACGACCACGACG chr5D_551 GCTCGTCAAGGACAGCAAGAACCTCCGGGTCACCGTCGACGACCACGAGG chr5D_1003 GCTCGGCAAGGACAGCAAGAACATCCAGGTCTCCATCGACGACCACGAGG chr7D_1005 GCTCGGCAAGGACAGCAAGAACCTCCGGGTCTCCGTGGACGACCACGAGG chr7B_1005 GCTCGGTAAGGACAGCAAGAACCTCCGGGTCTCCGTGGACGACCATGAGG chrUn_1005 GCTCGGCAAGGACAGCAAGAACCTCCTGGTCTCCATGGACGACCACGAGG chr7A_1007 GCTCGGCAAGGACAGCAAGAACCTCCTGGTCTCCGTGGACGACCATGAAG chr7A_1007 GCTCGGCAAGGACAGCAAGAACCTCCTGGTCTCCGTGGACGACCATGAAG chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 AGGTCACCGACGACTTCTCCGGCACAACCATCTGGTGGTACGCCTCCAAG chr5D_1_TraesCS5D01G004700 AGGTCACCGACGACTTCTCCGGCACAACCATCTGGTGGTACGCCTCCAAG chr5A_1 AGGTCACCGACGACTTCTCCGGCACGACCATCTGGTGGTACGCCTCCAAG chr5A_487 AGGTTACTGACGACTTCTCCGGGACAACCATCTGGTGGTACGCCTCCAAG chr5B_492 AGGTCACCGACGACTTCTCCGGCACGACCATCTGGTGGTACGCCTCCAAG chr5D_551 AGGTCACCGACGACTTCTCCGGCACAACCATCTGGTGGTACGCCTCCAAG chr5D_1003 GAGTCACCGATGACTTCTCCGGCGCCACGCTCTGGTGGCACGCCTCCAAG chr7D_1005 AGGTCACTGACGACTTCTCCGGGATCACCATCTGGTGGTACGCCTCCAAG chr7B_1005 AGGTCACTGACGACTTCTCCGGCATCACCATCTGGTGGTATGCCTCCAAG chrUn_1005 AGGTCACTGATGACTTCTCTGACATCACCATCTGGTGGTACGCCTCGAAG chr7A_1007 AGGTCACTGACGACTTCTCTGGGATCACCATCTGGTGGTACGCTTCCAAG chr7A_1007 AGGTCACTGCCGACTTCTCTGGGATCACCATCTGGTGGTACGCCTCCAAG chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CGGCAGTCCAAGGCCCAAGTCATCACCTTCTACCCCGGCGAGGACGAGCG chr5D_1_TraesCS5D01G004700 CGGCAGTCCAAGGCCCAAGTCATCACCTTCTACCCCGGCGAGGACGAGCG chr5A_1 CGGCAGTCCAGGGCCCAAGTCATCAGCTTCTACCCCGGCGAGGACGAGCG chr5A_487 CGGCAGTCCAAGGCCAACGTCATCAGCATCTACCCCGGCGAGGACGAGCG chr5B_492 CGGCAGTCCAAGGCCCAAGTCATCAGCTTCTACCCCGGCGAGGACGAGCG chr5D_551 CGGCAGTCCAAGGCCCAAGTCATCACCTTCTACCCCGGCGAGGACGAGCG chr5D_1003 CAGCGACCCAAGGCCAATGTCATCAGTTTGTACCCTGGCGAGGACGAGAA chr7D_1005 AGGCAGTCCAAGGCCAACGTCATCAGCTTATACCCCGGCGGGGACGAGAG chr7B_1005 AGGCAGTCCAAGGCCAACGTCATCAGTTTATACCCTGGAGGGGACGAGAG chrUn_1005 AGGCAATCCAAGGCCAACGTCATCCATTTATACCCCGGCCAGGACGAGAG chr7A_1007 AGGCAGTCCAAGGCCAACGTCATCAGCTTATACCCCGGCGGGGACGAGAA chr7A_1007 AGGCAGTCCAAGGCCAACGTCATCAGCTTATACCCCGGCGGGGACGAGAA chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCGCTTCTACAAGGTTGTCTTCCATAGGCGCCACCGCGACCTCGTCGTGG chr5D_1_TraesCS5D01G004700 GCGCTTCTACAAGGTTGTCTTCCATAGGCGCCACCGCGACCTCGTCGTGG chr5A_1 GCGCTTCTACAAGGTCGTCTTCCACAGGCGCCACCGCGACCTCGTCGTCA chr5A_487 GCGCTTCTACCAGGTCGTCTTCCACAGGCGGCACCGCGACCTCGTCGTCG chr5B_492 GCGCTTCTACAAGGTCATCTTCCACAGGCGCCACCGCGACCTTGTCGTCG chr5D_551 GCGCTTCTACAAGGTTGTCTTCCATAGGCGCCACCGCGACCTCGTCGTGG chr5D_1003 GCGCTTCTACCGGGTCACCTTCCATAAGCGACACCACGACCTCATCGTCG chr7D_1005 GCGCTTCTACCGAGTCGTCTTCCATCAGCGGCACCGCGACCTTGTCGTTG chr7B_1005 GCGCTTCTACCGACTCGTCTTCCATCGGCGGCATCGCGAACTTGTTGTTG chrUn_1005 GCGCTTCTACCGGGTCGTCTTCCATCGACGGCACCGCGACCTTGTCGCTG chr7A_1007 GCGCTTCTACCGGGTCGTCTTCCATCGGCAGCATCGCGACCTTGTCGTTG chr7A_1007 GCGCTTCTACCGGGTCGTCTTCCATCGGCAGCATCGCGACCTTGTCGTTG chr7D_1465 ------------------------------------------------GG chrUn_1465 ------------------------------------------------GG chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 ACTCCTACCTGCCCTTCGTGCTCGGCGAGGGCCGCGCCGTCACCGTCAAG chr5D_1_TraesCS5D01G004700 ACTCCTACCTGCCCTTCGTGCTCGGCGAGGGCCGCGCCGTCACCGTCAAG chr5A_1 ACTCCTACCTGCCCTTCGTGCTCGGCGAGGGTCGTGCCGTCACCGTCAAG chr5A_487 ACTCCTACCTGCCCTTCGTGCTTGGTGAGGGCCGTGCCGTCACCGTCAAG chr5B_492 ACTCCTACCTGCCCTTCGTGCTCGGCGAGGGTCGCGCCGTCACCGTCAAG chr5D_551 ACTCCTACCTGCCCTTCGTGCTCGGCGAGGGCCGCGCCGTCACCGTCAAG chr5D_1003 ATTCTTACCTGCCTTTCGTCCTCGGTGAGGGCCGCACCGTCATTATCAAG chr7D_1005 ACTCCTACCTTCCTTTCGTACTCGGCGAGGGCCGCGCTGTCACTGTGAAG chr7B_1005 ACTCCTACCTTCCTTTCGTACTCGGTGAGGGCCGCGCTGTCACTCTGAAG chrUn_1005 ACTCCTACCTTCCTTTCGTACTCGGTGAGGGCCGCGCTGTCACTGTGAAG chr7A_1007 ACTCCTACCTTCCTTTCATCCTCGGCGAGGGCCGCGCTGTCACTGTCAAG chr7A_1007 ACTCCTACCTTCCTTTCATCCTCGGCGAGGGCCGCGCTGTCACTGTCAAG chr7D_1465 ACTCCTACCTTCCTTTCATCCTCGGCGAGGGCCGCTGTTGCCGC--CAAA chrUn_1465 ACTCCTACCTTCCTTTCATCCTCGGCGAGGGTCGCGCTGTCACCGTCAAG chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCCGCAACTGGAACCC chr5D_1_TraesCS5D01G004700 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCCGCAACTGGAACCC chr5A_1 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCCGCAACTGGAACCC chr5A_487 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCTGCAACTGGAACCC chr5B_492 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCCGCAACTGGAACCC chr5D_551 AACCGCCAGCGCCGTCTCTTCACCAACAACGCCAGCCGCAACTGGAACCC chr5D_1003 AACCGCCAGCGCCGCCTCTTCACCAACAAGGCCAGCGGCAGCTCGAGCCC chr7D_1005 AACCGCCAACGCCGCCTCTTCACCAACAATGCTAGTGGTAGTTGGAACCC chr7B_1005 AACCGCCAACGCCGCCTCTTCACCAACAATGCTAGCGGCAGCTGGAACCC chrUn_1005 AACCGCCAACGCCATCTCTTCACCAACAATGCTAGCGGCGGCTGGAACCC chr7A_1007 AACCGCCAACGCCGCCTCTTCACCAACAATGCTAGCGGCAGCTGGAACCC chr7A_1007 AACCGCCAACGCCGCCTCTTCACCAACAATGCTAGCGGCAGCTGGAACCC chr7D_1465 AACCGCCAACGCTGCCTCTTCACCAGCAATGCCAGCAGTAGGGGTT---C chrUn_1465 AACATCCCATGCCGCCTCTTCACCAACAATGCCAGCGGCAGCTCGAACCC chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CTACCGCAGCAAGAGCGTCTGGAGCCACGTCCCCTTCGAACACCCCGCCA chr5D_1_TraesCS5D01G004700 CTACCGCAGCAAGAGCGTCTGGAGCCACGTCCCCTTCGAACACCCCGCCA chr5A_1 CTACCACAGCAAGAGCGTCTGGAGCCACGTCGCCTTCGAGCACCCCGCCA chr5A_487 CTACCGCAGCAAGAGCGTCTGGAGCCACGTCGCCTTCGAGCACCCCGCCA chr5B_492 CTACCGCAGCAAGAGCGTCTGGAGCCACGTCCCCTTCGAGCACCCCGCCA chr5D_551 CTACCGCAGCAAGAGCGTCTGGAGCCACGTCCCCTTCGAACACCCCGCCA chr5D_1003 TTACGGGGCCAAGAGCGCCTGGAGCCATGTACCGTTCGAGCACCCGGCGA chr7D_1005 CTACAAGGGCAAAAGCGTCTGGAGCCATGTCCCCTTCGAGCACCCCGCCA chr7B_1005 CTACCAGGGCAAAAGCGTGTGGAGCCATGTCCCCTTCGAGCACCCCGCCA chrUn_1005 CTACCAAGGGAAAAGCGTGTGGAGCCATGTCCCCTTCGAGCACCCTGCCA chr7A_1007 CTACCGGGGCAAAAGCGTCTGGAGCCACGTCCCCTTCGAGCACCCCGCCA chr7A_1007 CTACCGGGGCAAAAGCGTCTGGAGCCACGTCCCCTTCGAGCACCCCGCCA chr7D_1465 CTACCGGGGCAAAAGCATCTGGAGCCATGGCCCCTTCGAGCACCCCACCA chrUn_1465 CTACTGGGGCAAAAGCGTCTGGAGCCACGTCCACTTCGAGCACCCCGCCA chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CCTTCGACACGCTTGCCATGCACCCCGATGAGAAGGAGGCCATCGTTGAC chr5D_1_TraesCS5D01G004700 CCTTCGACACGCTTGCCATGCACCCCGATGAGAAGGAGGCCATCGTTGAC chr5A_1 CCTTCGACACGCTCGCCATGCACCCTGATGAGAAGGAGGCCATCGTTGAC chr5A_487 CCTTCGACACGCTCGCCATGCACCCCGATGAGAAGGAGGCCATCGTTGAC chr5B_492 CCTTCGACACGCTCGCCATGCACCCCGATGAGAAGGAGGCCATCGTTGAC chr5D_551 CCTTCGACACGCTTGCCATGCACCCCGATGAGAAGGAGGCCATCGTTGAC chr5D_1003 CCTTCGACACCCTTGCCATGAACCTGAAACAGAAGGAGGACGTCATCGAC chr7D_1005 CCTTTGACACGCTCGCCATGCACCCCGATGAGAAGGAAGCTGTCATCGAC chr7B_1005 CCTTTGACACGCTCGCCATGCACCCCGATGAGAAGGAAGCTGTCATCGAC chrUn_1005 CCTTTGACACGCTTGCCATGCACCCCGATGAGAAGGAAGCTGTCATCGAC chr7A_1007 CCTTTGACACGCTCGCCATGCACCCCGATGAGAAGGAAGCCGTCATCGAC chr7A_1007 CCTTTGACACGCTCGCCATGCACCCCGATGAGAAGGAAGCCGTCATCGAT chr7D_1465 CCTTTGGCACACTCGCT---CACCCTAATG---AGGAGGCCGTCATCGAC chrUn_1465 CCGTTGACACACTCGCCATGATCTCTGATGAGAATGAGGCCGTCATCAAC chr4A_1634 -----------------ATGCACCCTGATGAGAAGGAGGCCGTCATTGAC SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GACCTCAT----GGCGTTCCAGGAGAGCAAGGACTACTATGCCAAGGTCG chr5D_1_TraesCS5D01G004700 GACCTCAT----GGCGTTCCAGGAGAGCAAGGACTACTATGCCAAGGTCG chr5A_1 GATCTCAT----GGCGTTCCAGGAGAGCAAGGACTACTATGCAAAGGTCG chr5A_487 GACCTCAT----GGCGTTCCAGGAGAGCAAGGACTACTATGCAAAGGTCG chr5B_492 GACCTCAT----GGCATTCCAGGAGAGCAAGGACTACTATGCAAAGGTCG chr5D_551 GACCTCAT----GGCGTTCCAGGAGAGCAAGGACTACTATGCCAAGGTCG chr5D_1003 GACCTCAT----GGCATTCCAAGAGAGCAAGGAGTACTATGCTAAGGTCG chr7D_1005 GACCTCAT----GGCCTTCCAGGAGAGCAAGGAATACTATGCCAAGGTCG chr7B_1005 GACCTCAT----GGCCTTCCAGGAGAGCAAGGAATACTATGCCAAGGTCG chrUn_1005 GACCTCAT----GGCCTTCCAGGAGAGCAAGGAATACTATGCCAAGGTCG chr7A_1007 GATCTCAT----GGCGTTCCAGGAGAGCAAGGAATACTATGCCAAGGTCG chr7A_1007 GACCTCAT----GGCGTTCCAGGAGAGCAAGGAATACTATGCCAAGGTCG chr7D_1465 GACCTCATG----GCATTCCAGGAGAGCAAGGAATACTACGCCAAGGTCG chrUn_1465 GACCTCATGCATGGCATTCCAGGAGAGCAAGGAATACTACGCCAAGATCG chr4A_1634 GACCTCATG----GCATTCTAGGAGAGCAAGGAATACTACGCCAAGGTCG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTATGGACCGCCCGGCACCGGC chr5D_1_TraesCS5D01G004700 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTATGGACCGCCCGGCACCGGC chr5A_1 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTATGGACCGCCTGGCACCGGC chr5A_487 GCAAGGCATGGAAGCGCGGGTACCTCCTTTATGGACCGCCTGGCACCGGC chr5B_492 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTATGGACCGCCCGGCACCGGC chr5D_551 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTATGGACCGCCCGGCACCGGC chr5D_1003 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTACGGCCCGCCCGGCACCGGC chr7D_1005 GCAAGGCGTGGAAGCGCGGGTACCTTCTTTACGGACCGCCTGGCACCGGC chr7B_1005 GCAAGGCGTGGAAGCGCGGGTACCTCCTTTACGGACCGCCCGGCACCGGC chrUn_1005 GCAAGACGTGGAAGCGCAGGTATCTCCTTTACGGACCGCCCGGCACCGGC chr7A_1007 GCAAGGCATGGAAGCGTGGGTACCTCCTTTACGGACCGCCCGGCACCGGC chr7A_1007 GCAAGGCATGGAAGCGTGGGTACCTCCTTTACGGACCGCCCGGCACCGGC chr7D_1465 GCAAGGCGTGGAAGCATGGGTGCCTCCATTACGGACCGCCCGACACCGGC chrUn_1465 GCAAGGCATGGAAGCGTGGGTACCTCCTTTACGGACCGCCCGACACCGGC chr4A_1634 GCAAGACGTGGATGTGT-GGTACCTTCATTACGTACCACCTGACACTGGC SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTTGACTACGACGTCTA chr5D_1_TraesCS5D01G004700 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTTGACTACGACGTCTA chr5A_1 AAGTCCACCATGATCGCTGCCATGGCCAACTTCCTTGACTACGACGTCTA chr5A_487 AAGTCCACCATGATCGCTGCCATGGCCAACTTCCTTGACTACGACGTCTA chr5B_492 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTTGACTACGATGTCTA chr5D_551 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTTGACTACGACGTCTA chr5D_1003 AAGTCCACTATGATAGCCGCCATGGCCAACTTCCTCGACTACGACGTCTA chr7D_1005 AAGTCTACCATGATCGCCGCCATGGCCAACTTCCTCGACTATGACGTCTA chr7B_1005 AAGTCTACCATGATCGCCGCCATGGCCAACTTCCTCGACTATGACGTCTA chrUn_1005 AAGTCTACCATGATCGCCGCCATGGCCAACTTCCTCGACTATGACGTCTA chr7A_1007 AAGTCCACCATGATCGCAGCCATGGCGAACTTCCTCGACTACGACGTCTA chr7A_1007 AAGTCCACCATGATCGCAGCCATGGCGAACTTCCTCGACTACGACGTCTA chr7D_1465 AAGTCCACCATGATCGCCGCCATGGCCAACTTCGTCGACTACAAAGTCTA chrUn_1465 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTCGACGACGGCGTCTA chr4A_1634 AAGTCCACCATGATCGCCGCCATGGCCAACTTCCTCGACTACGACGTCTA SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CG-----------------ATCTCGAGCTCACAGCTGTCAAGAACAACAC chr5D_1_TraesCS5D01G004700 CG-----------------ATCTCGAGCTCACAGCTGTCAAGAACAACAC chr5A_1 CG-----------------ATCTCGAGCTCACTGCCGTCAAGAACAACAC chr5A_487 CG-----------------ATCTCGAGCTCACTGCCGTCAAGAACAACAC chr5B_492 CG-----------------ATCTCGAGCTCACTGCTGTCAAGAACAACAC chr5D_551 CG-----------------ATCTCGAGCTCACAGCTGTCAAGAACAACAC chr5D_1003 CG-----------------ACCTCGAGCTCACGGCCATCAACAACAACAC chr7D_1005 CG-----------------ACCTCGAGCTCACGGCGGTCAAGAACAACAC chr7B_1005 CG-----------------ACCTTGAGCTCACGGCGGTCAAGAACAACAC chrUn_1005 CG-----------------ACCTTGAGCTCACAGCGGTCAAGAACAACAC chr7A_1007 CG-----------------ACCTTGAGCTCACGGCGGTCAAGAACAACAC chr7A_1007 CG-----------------ACCTTGAGCTCATGGCGGTCAAGAACAACAC chr7D_1465 CGACCTCGAGCAGTCTACGACCTCGAGCTCACGACGGTCAAGAACAACAC chrUn_1465 TG-----------------AGCTTGAGCTCACGACGGTCAAGAACAACAG chr4A_1634 CG-----------------ACCTCAAGCTCACGGCGGTCAAGAACAACAC SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CGAGCTGCGGAAGC---TCTTCATCGAGACCACGGGCAAGTCCATCATCG chr5D_1_TraesCS5D01G004700 CGAGCTGCGGAAGC---TCTTCATCGAGACCACGGGCAAGTCCATCATCG chr5A_1 CGAGCTGCGGAAGC---TCTTCATTGAGACCACGGGCAAGTCCATCATAG chr5A_487 CGAGCTGCGGAAGC---TCTTCATTGAGACCACGGGCAAGTCCATCATAG chr5B_492 CGAGCTGCGGAAGC---TCTTCATCGAGACCACGGGCAAGTCCATCATCG chr5D_551 CGAGCTGCGGAAGC---TCTTCATCGAGACCACGGGCAAGTCCATCATCG chr5D_1003 CGAGTTGCGGAAGC---TCTTCATCGAGACGACGGGCAAGTCCATCATCG chr7D_1005 CGAGTTACGGAAGC---TCTTCATCGAGACAACGGGCAAGTCCATCATCG chr7B_1005 CGAGTTGCGGAAGC---TCTTCATCGAGACAACGGGCAAGTCCATCATCA chrUn_1005 CGAGTTGCGGAAGC---TCTTCATCGAGACAACAGGCAAGTCCATCATCG chr7A_1007 CGAGTTACGGAAGC---TCTTCATCGAGACAACGGGCAAGTCCATCATGG chr7A_1007 CGAGTTACGGAAGC---TCTTCATCGAGACAACGGGCAAGTCCATCATCG chr7D_1465 CGAGTTGCGGAAGC---TCTTCATCGAGACCACAAGCAAGTCCATCGTCG chrUn_1465 CGAGTTGCGGAAGC---TCTTCATCGAGACCACAGGCAAGTCCATCATCG chr4A_1634 CGAGTTGCGAAATCTCTTCTTCATCGAGACCACGGGCAAGTCCATCATCA SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 TCATAGAGGACATCGACTGCTCCATCGACCTCACCGGAAAACGCCGCAAG chr5D_1_TraesCS5D01G004700 TCATAGAGGACATCGACTGCTCCATCGACCTCACCGGAAAACGCCGCAAG chr5A_1 TCATAGAGGACATCGACTGCTCGATCGACCTCACCGGAAAACGCCGCAAG chr5A_487 TCATAGAGGACATCGACTGCTCAATAGACCTCACTGGAAAACGTCGCAAG chr5B_492 TCATAGAGGACATCGACTGCTCGATTGACCTCACCGGAAAACGCCGCAAG chr5D_551 TCATAGAGGACATCGACTGCTCCATCGACCTCACCGGAAAACGCCGCAAG chr5D_1003 TCATAGAGGACATTGACTGCTCCGCTGACCTCACCGGAAAACGCCGCAAG chr7D_1005 TCATAGAGGACATCGACTGCTCCGTCGACTTCACAGGAAAACGCCGCAAG chr7B_1005 TCATAGAGGACATCGACTGCTCCGTCGACTTCACAGGAAAACGCCGCAAG chrUn_1005 TCATAGAGGACATCGACTGCTCTGTCGACTTCACAGGAAAACGCCGCAAG chr7A_1007 TCATAGAGGACATCGACTGCTCCGTCGACTTCACAGGAAAACGCCGCAAG chr7A_1007 TCATAGAGGACATCGACTGCTCCGTCGACTTCACAGGAAAACGCCGCAAG chr7D_1465 TCATAGAGGACATTGACTGCTTTGTCAACCTCAGCGGAAAGCACCGCAAG chrUn_1465 TCATAGAGGACATTGACCGCTTGGTCAACCTCACCGGAAAACGCAGCAAG chr4A_1634 TCATAGAGGACATTGACTGCTCCGTCAACCTCACCGGAAAACGCCACAAG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GACAAGAAGGCCTCTAGTGACAAGGACTCCGACGATGATGACAAACCCAA chr5D_1_TraesCS5D01G004700 GACAAGAAGGCCTCTAGTGACAAGGACTCCGACGATGATGACAAACCCAA chr5A_1 GACAAGAAGGCCTCTAGTGACAAGGA------------------------ chr5A_487 GACAAGAAGGCCTCTAGTGATAAGGACTCTGACGATGATGACAAACCCAA chr5B_492 GACAAGAAGGCCTCTGGAGACAAGGACTCCGACAGTGATGACAAACCCAA chr5D_551 GACAAGAAGGCCTCTAGTGACAAGGACTCCGACGATGATGACAAACCCAA chr5D_1003 GACAAGAAGGCCTCTCGCGACAAGGACTCCGATGGCAACGACAAACCCAA chr7D_1005 GACAAGAAGGCCTCAAGCAACAAGGACTCCGACAACGATGACAAGCCCAA chr7B_1005 GACAAGAAGGCCTCAAGCGACAAGGACTCCGACAACGATGACAAGCCCAA chrUn_1005 GACAAGAAGGCCTCAAGCGACAAGGACTCCGACAACGATGACAAGCCCAA chr7A_1007 GACAAGAAGGCCTCAAGCGACAAGGACTCCGACAACGATGACAAGCCGAA chr7A_1007 GACAAGAAGGCCTCAAGCGACAAGGACTCCGACAACGATGACAAGCCGAA chr7D_1465 GACAAGAAGACCGCAAGCGACAAGGCCTCCAACAATGATGACAAGCCCAA chrUn_1465 GACAAGAAGACCGCAAGCGACAAGGACTCCAACAATGATGACAAGCCCAA chr4A_1634 AACAAGAAGGCCGCAAATGACAAGGACTCTGACAATGATGACAAGCCCAA SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCTACCGATGGATCCAGAGAAGGACGACGCCACCAAGGTGACGCTCTCGG chr5D_1_TraesCS5D01G004700 GCTACCGATGGATCCAGAGAAGGACGACGCCACCAAGGTGACGCTCTCGG chr5A_1 -------------------------------------------------- chr5A_487 GCTACCGATGGATCCAGAGAAGGACAATGCCACTAAGGTGACGCTCTCGG chr5B_492 GCTACCGATGGATCCAGAGAAGGACGACGCCACCAAGGTGACGCTCTCGG chr5D_551 GCTACCGATGGATCCAGAGAAGGACGACGCCACCAAGGTGACGCTCTCGG chr5D_1003 GCTACCAATCGAGCCAGAGAAGGATGACGCGACCAAGGTGACGCTCTCTG chr7D_1005 GCTACCGATAGAGCCAGAGAAGGACGATGCCACCAAGGTGACGCTCTCGG chr7B_1005 GCTACCGATAGAGCCAGAGAAGGACGATGCCACCAAGGTGACGCTCTCGG chrUn_1005 GCTACCGATAGAGCCAGAGAAGGACGATGCCACCAAGGTGACGCTCTCGG chr7A_1007 GCTACCGATAGAGCCAGAGAAGGACGATGCCACCAAGGTGACGCTCTCGG chr7A_1007 GCTACCGATAGAGCCAGAGAAGGACGATGCCACCAAGGTGACGCTCTCGG chr7D_1465 GCTACCGGTAGAGCCGGAGAACGATGACGTTACCAAGGAGATGCTCTCAG chrUn_1465 GGTACCGGTAGAGCCGGAGAAGGATGATGTCACCAAGGTGACGCTCTCAG chr4A_1634 GCTACCGGTAGAGCCGGAGAAGGACGACGTCACCAAGGTGACGCTCTCAG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GCCTCCTCAACTTCATTGATGGACTTTGGTCTGCTTGCGGGGGTGAGCGG chr5D_1_TraesCS5D01G004700 GCCTCCTCAACTTCATTGATGGACTTTGGTCTGCTTGCGGGGGTGAGCGG chr5A_1 -------------------------------------------------- chr5A_487 GCCTCCTCAACTTCATTGATGGACTTTGGTCTGCTTGCGGGGGTGAGCGG chr5B_492 GCCTCCTCAACTTCATCGACGGGCTATGGTCTGCTTGCGGGGGTGAGCGG chr5D_551 GCCTCCTCAACTTCATTGATGGACTTTGGTCTGCTTGCGGGGGTGAGCGG chr5D_1003 GCCTGCTCAACTTCATCGACGGGCTGTGGTCTGCGTGCGGCGGCGAGCGG chr7D_1005 GTCTGCTTAACTTCATCGACGGGCTGTGGTCTGCTTGCGGAGGTGAGCGG chr7B_1005 GCCTGCTTAACTTCATCGACGGGTTGTGGTCTGCTTGCGGAGGTGAGCGG chrUn_1005 GCCTGCTTAACTTCATCGACGGGTTGTGGTCTGCTTGCGGAGGTGAGCGG chr7A_1007 GCCTGCTTAACTTCATCGACGGGCTGTGGTCTGCTTGCGGAGGTGAGCGG chr7A_1007 GCCTGCTTAACTTCATCGACGGGCTGTGGTCTGCTTGCGGAGGTGAGCGG chr7D_1465 GCCTGCTTAACTTCATCGACGGGCTGTGGTCTGCTTGCGGAGGTGAGCGG chrUn_1465 GCCTGCTTAACTTCATCGACGGGCTGTGGTCTGCTTGCGGAGGTGAGGGG chr4A_1634 -CCTGCTTAACTTC---GACGGGCT---------GTGCGGAGGTGAGCGG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 ATCATCATCTTCACTACCAACCACAAGGACAAGCTCGATCCGGCGCTGAT chr5D_1_TraesCS5D01G004700 ATCATCATCTTCACTACCAACCACAAGGACAAGCTCGATCCGGCGCTGAT chr5A_1 ----------------------------------------------TGAT chr5A_487 ATCATCATCTTCACCACTAACCACAAGGAGAAGCTCGATCCGGCGCTGAT chr5B_492 ATCATCATCTTCACCACCAACCACAAGGAGAAGCTCGATCCGGCGCTGAT chr5D_551 ATCATCATCTTCACTACCAACCACAAGGACAAGCTCGATCCGGCGCTGAT chr5D_1003 ATCATCATCTTCACCACCAACTACAAGGAGAAGCTGGACCCGGCACTGAT chr7D_1005 ATCATCATCTTCACCACCAACCACAAGGAGAAGCTGGACCCGGCGCTGAT chr7B_1005 ATCATCATCTTCACCACCAATCACAAGGAGAAGCTAGACCCGGCGTTGAT chrUn_1005 ATCATCATCTTCACGACCAACCACAAGGAGAAGCTGGACCCGGCGCTGAT chr7A_1007 ATCATCATCTTCACCACCAACCACAAGGAGAAGCTGGACCCGGCGCTGAT chr7A_1007 ATCATCATCTTCACCACCAACCACAAGGAGAAGCTGGACCCGGCACTGAT chr7D_1465 ATCATCATCTTCACCACCAACCACAAGGAGAAGCTAGACTCAGTGTTGAT chrUn_1465 ATCATCATCTTCTCCACCAACCACAAGGAGAAGCTGGACTAGGTGTTGAT chr4A_1634 ATCATCATCACCACGAACGACAACGA----AAGCTGGACCCGGCGTTGAT SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CCGTCGAGGAAGGATGGACAAGCACATCGAGATGTCATACTGCCGCTTCG chr5D_1_TraesCS5D01G004700 CCGTCGAGGAAGGATGGACAAGCACATCGAGATGTCATACTGCCGCTTCG chr5A_1 CCGTCGAGGAAGGATGGACAAGCACATCGAGATGTCATACTGCCACTTCG chr5A_487 CCGTCGAGGAAGAATGGACAAGCACATCGAGATGTCATACTGCCGATTCG chr5B_492 CCGTCGAGGAAGGATGGACAAGCATATCGAGATGTCATACTGCCGCTTCG chr5D_551 CCGTCGAGGAAGGATGGACAAGCACATCGAGATGTCATACTGCCGCTTCG chr5D_1003 CCGGCGGGGCAGGATGGACAAGCACATTGAGATGTCTTACTGCCGCTTTG chr7D_1005 CCGGCGGGGCAGGATGGACAAGCACATCGAGATGTCCTACTGCCGCTTTG chr7B_1005 CCGGCGGGGCAGGATGGACAAGCACATCGAGATGTCCTACTGCCACTTTG chrUn_1005 CCAGCGGGGCAGGATGGACAAGCACATCGAGATGTCCTACTGCCGCTTTG chr7A_1007 CCGGCGGGGTAGGATGGACAAGCACATCGAGATGTCCTACTGCCGCTTTG chr7A_1007 CCGGCGGGGTAGGATGGACAAGCACATCGAGATGTCCTACTGCCGCTTTG chr7D_1465 CCGGCAGGGCAGAGTGGACAAGCACATCGAGATGTCCTACTACCGCTTCG chrUn_1465 CCGGAGGGGCGGAGTGGACAAGCAAATCGAGATGTCCTACTACCGCTTCG chr4A_1634 CCGGAGGGATAGGATGGACAAGCACATCGAGTTTTCCTACTGCCACTTCA SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 AGGGCTTCAAGGTGCTCGCCAAGAACTACTTAGATGTCATCGAGCATGAG chr5D_1_TraesCS5D01G004700 AGGGCTTCAAGGTGCTCGCCAAGAACTACTTAGATGTCATCGAGCATGAG chr5A_1 AGGGCTTCAAGGTGCTCGCCAAGAACTACTTAGATGTCATCGAGCATGAG chr5A_487 AGGGCTTCAAGGTCCTCGCCAAGAACTACTTAGATGTCATCAAGCATGAG chr5B_492 AGGGCTTCAAGGTTCTAGCCAAGAACTACCTAGATGTCATTGAGCATGAC chr5D_551 AGGGCTTCAAGGTGCTCGCCAAGAACTACTTAGATGTCATCGAGCATGAG chr5D_1003 AGAGCTTCAAGGTACTCGCCAAGAACTACCTAGATGTCGTCGGGCATGAG chr7D_1005 AGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGCACGAG chr7B_1005 AGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGCACGAG chrUn_1005 AGGGATTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGCACGAG chr7A_1007 AGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGCATGAG chr7A_1007 AGGGCTTCAAGGTGCTCGCCAAGAACTACCTAGATGTCATTGAGCATGAG chr7D_1465 AGGGCTTCAAGGTGTTCACCATAAACTACCTAGATGTCCTCGAGCACGAG chrUn_1465 AGGGATTCAAGGTGCTCGCCATAAACTACCTAGATGTCATCGAGCACAAG chr4A_1634 AGGGCTTCAAGGTGCTTGCTAGAAACTACCTAGATGTCATTGAGCATGAG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CTGTTTGGGGAAATTCAGCGGCTGCTCGAGGAGACCGACATGTCGCCCGC chr5D_1_TraesCS5D01G004700 CTGTTTGGGGAAATTCAGCGGCTGCTCGAGGAGACCGACATGTCGCCCGC chr5A_1 CTGTTTGGGGAAATTCAGCGGCTGCTCGAGGAGACCGACATGTCACCCGC chr5A_487 TTGTTTGGAGAAATTCAGCAGCTGCTCGAGGAGACCAACATGTCGCCCGC chr5B_492 CTGTTTGGGGAAATTCAGCGGCTACTCGAGGAGACCGACATGTCGCCCGC chr5D_551 CTGTTTGGGGAAATTCAGCGGCTGCTCGAGGAGACCGACATGTCGCCCGC chr5D_1003 CTGTTTGGGGAGATTCAGCAGCTGCTCGAGGAGACCGACATGTCGCCCGC chr7D_1005 CTGTTTGGGGAAGTCCAGCGCCTGCTCGAGGAGACCGACATGTCGCCCGC chr7B_1005 CTGTTTGGGGAAGTTCAGCGCCTGCTCGAGGAGACCGACATGTCACCCGC chrUn_1005 CTGTTTGGGGAAGTTCAGCGCCTACTCGAGGAGACCGACATGTCACCCGC chr7A_1007 CTGTTTGGGGAAGTTCAGCGCCTGCTCGAGGAGACCGACATGTCGCCCGC chr7A_1007 CTGTTTGGAGAAGTTCAACGCCTGCTCGAGGAGACCGACATGTCGCCCGC chr7D_1465 CTCTTTGGGGAAATTTAGTGGCTGCTCGAGGAGATAGGCAAGTCGCCCGC chrUn_1465 CTCTTTGGGGAAATTTAGCGGCTGCTCGAGGAGACAGACATGTTGCCTGC chr4A_1634 CTCCTTGGGGAAATTCAGCGGTTGCTTGAGGAGAGAGACATGCTGCCCAC SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CGACGTTGCAGAGAACCTGATGCCAATGTCGAAGAAGAAAAAAAGGGACC chr5D_1_TraesCS5D01G004700 CGACGTTGCAGAGAACCTGATGCCAATGTCGAAGAAGAAAAAAAGGGACC chr5A_1 CGACGTTGCAGAGAACCTGATGCCAATGTCGAAGAAGAAAAAGAGGGACC chr5A_487 CGACGTTGCAGAGAACCTGATGCCAATGTCGAAGAAGAAAAAGAGGGACC chr5B_492 CGATGTTGCAGAGAATCTGATGCCAATGTCGAAGAAGAAAAAGAGGGACC chr5D_551 CGACGTTGCAGAGAACCTGATGCCAATGTCGAAGAAGAAAAAGAGGGACC chr5D_1003 TGACGTGGCGGAGAACCTGATGCCCATGTCCAAGAAGAAAAAGAGGGACC chr7D_1005 TGACGTTGCAGAGAACCTGATGCCCATGTCGAAGAAGAAAAAGAGGGACC chr7B_1005 TGACGTTGCAGAGAACCTGATGCCCATGTCGAAGAAGAAAAAGAGGGACC chrUn_1005 TGACGTTGCAGAGAACCTGATGCCCATGTCGAAGAAGAAAAGGAGGGACC chr7A_1007 TGACGTTGCAGAGAACCTGATGCCCATGTCGAAGAAGAAAAAGAGGGACC chr7A_1007 TGACGTTGCAGAGAACCTGATGCCCATGTCGAAGAAGAAAAAGAGGGACC chr7D_1465 CGATGTTGCAGGTAACCTAATGCCCATGTCGAAGAAGAAAAAGAGGGAGC chrUn_1465 CGACGTTGCAGGGAACCTTATGCCCATGTGGAAGAAGCAAAAGAGGGAGC chr4A_1634 CGACGTTGCAGAGAACCTGATGC--AAGTCGAAGAAGAAAATGACAGACC SNPs ------------------------------------------S------- forward_386 -------------------------------------------------- reverse_2493 ------------------------------------------AAGGGACC forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CTGATTTGTGTTTGTCGGGCCTCGTCAAGGCACTCAAGCAGGCCAAGGAA chr5D_1_TraesCS5D01G004700 CTGATTTGTGTTTGTCGGGCCTCGTCAAGGCACTCAAGCAGGCCAAGGAA chr5A_1 CTGATTTGTGTTTGTCGGGCCTCGTCAAGGCACTCAAGCAGGCCAAGGAA chr5A_487 CTGATTTGTGTTTGTCGGGCCTCGTCAAGGCACTCAAGCAGGCCAAGGAA chr5B_492 CTGATTTGTGTTTCTCAGGCCTCGTCGAGGCGCTCAAGCAGGCCAAGGAA chr5D_551 CTGATTTGTGTTTGTCGGGCCTCGTCAAGGCACTCAAGCAGGCCAAGGAA chr5D_1003 CTGACGTGTGCTTGGCAGGCCTCATCGAGGCGCTCAAGCAGGCCAAAGAA chr7D_1005 CGGATGTGTGCTTGATAGGCCTAATCGAGGCGCTCAAGCAGGCCAAGGAG chr7B_1005 CAGATGTGTGCTTGATAGGCCTAATCGAGGCGATCAAGCAGACCAAGGAG chrUn_1005 CGGATGTGTGCTTGATAGGCCTAATCGAGGCGCTCAAGCAGGCCAAGGAG chr7A_1007 CGGATGTGTGCTTGATAGGCCTAATCGAGGCGCTCAAGCAGGCCAAGGAG chr7A_1007 CGGATGTGTGCTTGATAGGCCTAATCGAGGCGCTCAAGCAGGCCAAGGAG chr7D_1465 CTGACGAGTGCTTGACAGGCCTCATTGAGGTGCTCAAGCAGGCCAAAGAG chrUn_1465 CCGACGAGTGCTTGACAGGCCTCATTGAGGTGCTCAAGCAGGCCATGGAG chr4A_1634 CCACCGTGTGCTTGAGAGGTCTCATCGAGGCGCTCAAACAGGCCAAAGAG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 CTGATTTGTGTTTG------------------------------------ forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GACGCGGCAGCAGCAGCA---GCGGCCAAGGCGAAGGAGGAAGAAGAGGC chr5D_1_TraesCS5D01G004700 GACGCGGCAGCAGCAGCA---GCGGCCAAGGCGAAGGAGGAAGAAGAGGC chr5A_1 GATGCG---GCGGCAGCA---GCGGCCAAGGCGGAGGAGGAAGAAGAGGC chr5A_487 GATGCG---GCAGCAGCA---GCTGCCAAGGCGAAGGAGGAAGAAGAGGC chr5B_492 GGCGCG---GCAGCAGCG---GCGGCCAAGGCGAAGGCGGAAGAAGAGGC chr5D_551 GACGCG---GCAGCAGCAGCGGCGGCCAAGGCGAAGGAGGAAGAAGAGGC chr5D_1003 GACGCG---GCGGTC---------GCCAAGGCGAAGGAGGAAGAGAAGGC chr7D_1005 GAAGCG---GCGGCG---------GCCAAGGTGAAGGAGGCAG------- chr7B_1005 GAAGCG---GCGGCG---------GCCAAGGTGAAGGAGGCAG------- chrUn_1005 GAAGCG---GCGGCG---------GCCAAGGTGA---AGGCAG------- chr7A_1007 GAAGCG---GCGGCG---------GTCAAGGTGAAGGAGGCAG------- chr7A_1007 GAAGCG---GCGGCG---------GTCAAGGTGAAGGAGGCAG------- chr7D_1465 GACGTG---GCGGCA---------GCCAAGGTGAAGGAGGCAG------- chrUn_1465 GATGCG---GCGGCA---------ACCAAGGTGAAGGAGGCAG------- chr4A_1634 GACGTG---GTGGCG---------GCCAAGGTGAAGGAGGCAG------- SNPs ------SSS----------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CAAGGAGGCTGAAG---------CAAAGAAAGACAAGGAGAAAGAGGAGG chr5D_1_TraesCS5D01G004700 CAAGGAGGCTGAAG---------CAAAGAAAGACAAGGAGAAAGAGGAGG chr5A_1 CAAGGAGGCTAAAG---------CAAAGATAGCCAAGGAGAAAGAAGAGG chr5A_487 CAAGGAGGCTGAAG---------CAAAGAAAGTTAAGGAGAAAGAGGAGG chr5B_492 CAAGGAGGCTGAAG---------CAAAGAAAGTTAAGGAGAAAGAGGAGA chr5D_551 CAAGGAGGCTGAAG---------CAAAGAAAGACAAGGAGAAAGAGGAGG chr5D_1003 CAAGGAGGCTGAAG---------CGAAGAAAGCCAAGGAGAAAGAGGAGG chr7D_1005 --AGGAGGCTCAAG---------CGAAGAAAGCCAAGGAGAAAGAGGAGA chr7B_1005 --AGGTGGCTCAAG---------CGAAGAAAGCCAAGGAGAAAGAGGAGA chrUn_1005 --AGGAGGCTCAAG---------CGAAGAAAGCCAAGGAGAAAGAGG--- chr7A_1007 --AGGAGGCTCAAG---------CGAAGAAAGCCAAGGAGACAGAGGAGA chr7A_1007 --AGGAGGCTCAAG---------CGAAGAAAGCCAAGGAGATAGAGGAGA chr7D_1465 --AGGAGG------------------------CCGAGGAGAAAGAGGAGG chrUn_1465 --AGGAGGCCAAGGAGGCCGCAACAAAGAAAGCCAAGGAGAAAGAGGAGG chr4A_1634 --AGGAGG------------------------CCAAGGAGAAAGAGGAGG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 CGGGGTTGAAGAAAGCCAATGAGGAAAACAAAGGGAAGGACAAAGCACCG chr5D_1_TraesCS5D01G004700 CGGGGTTGAAGAAAGCCAATGAGGAAAACAAAGGGAAGGACAAAGCACCG chr5A_1 CGGCGGTGAAGAAAGCCAAGGAGGAAAACAAAGGGAAGGACAAAGCAGCA chr5A_487 CAGAGGTGAAGAAAGTCAATGAGGAAAACAAAGGGAAGGACAAAGCACCG chr5B_492 CGGAGGTGAAGAAAGCAAAGGAGGAAAACAAAGGGAAGGACAAAGCACCG chr5D_551 CGGGGTTGAAGAAAGCCAATGAGGAAAACAAAGGGAAGGACAAAGCACCG chr5D_1003 CTGAAGTGAAGAAAGCCAAGGAGAAAGAGGAAGGGAAGGACAAAACATCA chr7D_1005 CAGAGGTGAAGAAAGGCAAAGAC------------AAAGACAAAGCACCC chr7B_1005 CAGAGGTGAAGAAAGGCAAGGAGGAAGACCAAGAGAAGGACAAAGCACCC chrUn_1005 ------TGAAGAAAGGCAAGGAGGAAGACCAAGAGAAGGACAAAGCACCC chr7A_1007 CAGAGGTGAAGAAAGGCAACGAGGAAGACAAAGAGAAGGACAAAGCACCC chr7A_1007 CAGAGGTGAAGAAAGGCAAGGAGGAAGACAAAGAGAAGGACAAAGCACCC chr7D_1465 CAGAGGTGAAGAAAGCCAAGGAGGAAAACAAAGGGAAGGACAAAGCACCG chrUn_1465 CAGAGGTGAAGAAAGCCAAGGAGGAAGACAAAGGGAAGGACAAAGCACCG chr4A_1634 GAGAGGTGAAGAAAGCGAAGGAGGAAGACAAAGGGATGGACAAAGCACCG SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 GAGGAAGCCAATGGAGACATCAAGGAAGGTGACAA-GTGA---------- chr5D_1_TraesCS5D01G004700 GAGGAAGCCAATGGAGACATCAAGGAAGGTGACAA-GTGAAGTGACATCA chr5A_1 GAGGAAGCCAATGGAGACATCAAGGAAGGTGACAAAGTAAAGTGAAATCA chr5A_487 GAGGAAGCCAATGGAGACATCAAGGAAGGTGACAA-GTGAAGTTACATCA chr5B_492 GAGAAAGCCAATGGAGACATCAAAGAAGGTGACAA-GTGAAGTGATACCA chr5D_551 GAGGAAGCCAATGGAGACATCAAGGAAGGTGACAA-GTGAAGTGACATCA chr5D_1003 GAGGAAGCCATTGGAGACAACATGCAAGCTGACAA-G------------- chr7D_1005 GAGGCAGCCAATGGGGATATTAAGCAAGGTGACAA-GTGAAGTGACATCA chr7B_1005 GAGGCAGCCAATGGGGATATTAAGCAAGGCCACAA-GTAAAGTGACATCA chrUn_1005 GAGGCAGCCAATTGGGATATTAAGCAAGGTGACAA-GTGAAGTGACATCA chr7A_1007 GAGGCAGCCAATGGGGATATTAAGCAAGGTGACAA-GTGAAGTGACATCA chr7A_1007 GAGACAGCCAATGGGGATATTAAGCAAGGTGACAA-GTGAAGTGACATCA chr7D_1465 CAGGAAGCCAATGGAGATATTAG---------CAA-GTGAAGTGATCTCA chrUn_1465 GAGGAAGCCAATGGAAATATCA---------ACGA-GTGAAGTGATCTCA chr4A_1634 GAGGAAGCCAATGGAGATATCAAGTCAGGTGACAA-GTGAAATGATCTCA SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 AGAAAGGAAGCAAAGG--AAAAAAGAATTAGCTTGTTCACTAGTGCCCCC chr5A_1 AGAAAGAAAGCCAAGG--AAAAAAGAATGAGCTTGTTCACTAGTGCCCGC chr5A_487 AGAAAGGAGGCAAAAGAAAAAAAAGAACTAGCTTGTTCACTAGTGCCCCT chr5B_492 AGAAAGGAAGCAAAGG--AAAAAAGAATGAGCTTGTTCACTAGT------ chr5D_551 AGAAAGGAAGCAAAGG--AAAAAAGAATTAGCTTGTTCACTAGTGCCCCC chr5D_1003 -------------------------------------------------- chr7D_1005 CGACAGGAAGCCAAGG---AAAAAGAATGAGCTTGTTCACTAGTGCTCCC chr7B_1005 CGCGAGGAAGCCAAGG---AAAAAGAATGAGCTTGTTCACTAGTGCTCCC chrUn_1005 CGCCAGGAAGCCAAGG---AAAAAGAATGAGCTTGTTCAGTAGTGCTCCC chr7A_1007 CGCCAGGAAGCCAAGG---AAAAAGAATGAGCTTGTTCACTAGTGCTCCC chr7A_1007 CGCCAGGAAGCCAAGG---AAAAAGAATGAGCTTGTTCACTAGTGCTCCC chr7D_1465 AGCCAGGAAGCCAAGG---AAAAAGAGTGCGCTTGTTCACTAGTGCTCCC chrUn_1465 AGCCAGGAAGCCAAGG---AAAACGAGTGCGCTTCTTCACTATTGCTTCC chr4A_1634 AGCCAGGAAGCCAAGG---AAAAAGAGTGAGTTTATTCACCAGTGCTCCC SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 T-TTAACAAAAGATAAATGCATCTTTG---------AAATGAAAACCTCT chr5A_1 T-TGTACAAAAAGAAAATGCAGTGTTTGTTCACAGAAAATATAAG-CTCT chr5A_487 TGTACAAAAGAAAAA--TGCAGTGTTTATTTACAGAAAATATAAACCTCT chr5B_492 ---ACAAAAAGAAAA--TGCAGTGTTTGGTCACAGAAAATATAAA-CTCT chr5D_551 T-TCTACAAAAGATAAATGCATCTTTG---------AAATGAAAACCTCT chr5D_1003 -------------------------------------------------- chr7D_1005 T-TACAAAACAAAAA--TGCAGTGTTTG---------------------- chr7B_1005 T-TACAAAACAAAAA--TGCAGTGTTTG---------------------- chrUn_1005 T-TACAAAACAAAAA--TGCAGTGTTTG---------------------- chr7A_1007 T-TACAAAACAAAAA--TGCAGTGTTTG---------------------- chr7A_1007 T-TACAAAACAAAAA--TGCAGTGTTTG---------------------- chr7D_1465 T-TGCAAAAGAAAAA--TGCA----------------------------- chrUn_1465 T-TGCAAAAGAAAAA--TGCA----------------------------- chr4A_1634 T-TGCAAAAGAAATA--TGCA----------------------------- SNPs ---SS--------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 AAACTGAAATA-TTATGTGTAGCATCTCTCATTTGTAA-------TATAT chr5A_1 CAACTGAGATA-TTGTGTGTTGCATCTCTCATTTGTAA-------TAT-- chr5A_487 CAACTGAAGTATTTATGTGTTGCATCTCTCATTTGTAAATTGTAATAT-- chr5B_492 CAACCGAAATA-TTATGTGTTGTATCTCTCATTTGTAA-------TAT-- chr5D_551 AAACTGAAATA-TTATGTGTAGCATCTCTCATTTGTAA-------TATAT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ATGTGCCCCCTTACCTATATACTCCCTCCTTGTAGATATTTGTTTTATCT chr5A_1 --GTGCCCCCTTACTTATATA-------------GATAATTGTTTCATCT chr5A_487 --GTGCCCTCTTACCTATATA-------------GATATTTGTTTCATCT chr5B_492 --CTGCCCCCTTATATATATAAGCGCTATTCGTTCCCCTGGGTGAGAAAT chr5D_551 ATGTGCCCCCTTACCTATATACTCCCTCCTTGTAGATATTTGTTTTATCT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CTAATTTGTAGTAC------------------------------------ chr5A_1 CTCATTTGTAA--------------------------------------- chr5A_487 CTCATTTGTAA--------------------------------------- chr5B_492 AGTTATTCTTCACCCATTTTCTATTCTGACTTCAATGCATCGTATTTTTA chr5D_551 CTAATTTGTAGTAC------------------------------------ chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CATTTCGTAAATTTTGCCTTATTTCATACATAAAAAAAGTAAGAAAATAT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATACTCGCCTCAAAAAATATTTTATGTTACGTAAAATAACGAATGTAAAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ACATAGTGTAAAACGTACATAAAATGTGATTTTTCTGGTCTTATAACCTA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TACTTTTGTTTTTTATACCAAAGTTTATATATTAAACCAATATGCATGCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ACTATTTATATTCTAAACATAATTTATTTAGAAAGCGATCATAAGATTAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CTCGGGTGAAGAATAAATTATTGTGCATCCTGGATGATGAATATTAATAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TATATATATATATATATATATATATATATATATATATATATATATATAGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 --TATTTCTGGTAAAACTATAGAAAATGCTAACAAGACCCATTCGGTTTA chr5A_1 --TATTTCCGGCAAAACTATACAAAATGCTAACAAGACCCATTCGCTTTA chr5A_487 --TATTTCCGATAAAACTATACAAAATACTAACAAGACCCATACACTTTA chr5B_492 ATTATTTTCGGTAAAACTATACAAAATGCTAACAAGACCCATCCGCTTTA chr5D_551 --TATTTCTGGTAAAACTATAGAAAATGCTAACAAGACCCATTCGGTTTA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CCTACACCAAAATGCTAACAAGTTTTTCTACAGGGAATTAAACCTAAACA chr5A_1 CCTACAACAAAATGCTAACCAGTTTTTCTATAGGGAGTTAAACCTAAACG chr5A_487 CCTACACCGAAATGCTAACACGTTTTTCTATAGGGAATTAAACCTACCCA chr5B_492 CCTACACCAAAATGCTAACGACTTTTTCTATCGGGAATTAAACCTAAACA chr5D_551 CCTACACCAAAATGCTAAGAAGTTTTTCTACAGGGAATTAAACCTAAACA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TGGCATAAGAAG-------------------------------------- chr5A_1 TGGCATAAGAAG-------------------------------------- chr5A_487 AATTTTGTAAAGTGCACGCGCACTTTTTAGACAAAACGAGCGGCTTGACT chr5B_492 TGGCATAAGAAG-------------------------------------- chr5D_551 TGGCATAAGAAG-------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 CATAGCACATGCATGCGCTTAATTTTTTTGTCTGCTAGTGCATGCGACCG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TGGCATTAAATGCGTCACACTGCTCCTTTAGTATGGGAACAGACAAATTC chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 ACGTACATTCATTTTGGATTCTCAAAAATTCAAAAAAGCATATCTTTCTA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 ACCGCGCGTCGGAATTCAAATTTGTTTTCATTGTCGGAATCCTCGCGACG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AGATCTTTGAAACTAGATCCCGCATGAGTATGTTTTGACGAAATTTTTTC chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AATGCCAATTTTGGGGGCTATATTGTGCAACCTTTAGTATTGATGGTGCA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 ACTTTAGTCCTGTATGGTGCAAATTTTTTTAAAATCAATTTTAGAGATGT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 ATGATCCAACCAGTGATGAGGCTATAACATAGCAACTAACAACGGAATTT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TGTGATGTGCAACTAGTCTACTGTCCCAGTCAACTACCTAGTAGTAGATG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TGCAAACCTCCCCTACCTACTTATGGATGCCTACTGTTGGCACACCCTGC chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -----CTTCCCTACCATTTCATCAACACAATATCG--------------- chr5A_1 -----CTTCCCTACAATTTCACCAACACAATATCG--------------- chr5A_487 CCCACCTTCCCTACCAGCGATATGCGCAACTTAGTATGTTGTTCATGCCG chr5B_492 -----CTTCTCTACCATTTCACCAACACAATATCG--------------- chr5D_551 -----CTTCCCTACCATTTCATCAACACAATATCG--------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 ACTATCTATCAGTCGATGTGCAACTCTTTTCCCTCCCTATTTGTGGATAT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GCAGTTTTGGTTGGCGGGGGAACAAACAGAGTTGCACATAGTCTTCTAGG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 CAGTTGGCCAGGTGAACATACGAAGTTGCACATCTCATAGGCAGGGGATA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GTTGGATGGTGAAAATTCCACATTCACGAGGATAGTGAAAAGTTGCATAT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AGATAGGGCGCTAAAGTTGCAAATCTTACTAGCAAGGGTGGTTCGAACCA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GTTGCTAGAAGGGAAAATTACACATCCATGGGATACGATGAAAAGTTGCA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 CATCACTGCTAGATAGTTGGCCGTTGCAGTATCCGAAGTTGTACATCCAA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TACTAGAAAGTTGGCAAATGCAACAAACAGTGAAAGCACATCCACGGGAA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AGGAAAAAGTTGCACATCAATTACTAGGGAGTTGGCCTGAGCAACAGACG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AAGTTGCACATCTCACTAGAAGGGGTAGTTCGAGAAGGTGGAGGTAACAT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 CAGTGAAAACTGCACGTCCACGGGGTAGGAGAAAAGTTGCACATCCACGG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TCAGCCAGTTGCACATCGACTACTAGTAGTTGCACAAAACAAGGGACTAA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GTTGCACAAAAGATTCATCAAAACATATTCATGCGGGATCTAGTTTCGAA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 AAGCACGTCATGAGGGTTCCAACAGTGAAAACGAATCTTAATTTCGATTC chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GCGATTTAAAAGTTATGGTATTCTAAAATTTGTAAATCATGAATCAAATG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GTACAAAGCCATCCACGTCCATGCAGCAAAAAAAGGTGCAACCAATGCAT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GTGGACCATTTAATATGCATGTTGGTTGGATATTTTCTGTTTAACTAGTT chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 GAGACCAAAGGAATCTTTCCTAATCAGGCCGAAGGGACAAACACTTTCCA chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 TTAATAACCGGCCGCTGTGAAGCGTCAGGGAGCCAATGGCTGCTCGCTAG chr5B_492 -------------------------------------------------- chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 --------------------------------------------TCACTA chr5A_1 --------------------------------------------ACACTA chr5A_487 ACTCGTCCTTAAACCTAAACGTGACACCGAAATGCTAACACGTTTCACTA chr5B_492 --------------------------------------------TCACTA chr5D_551 --------------------------------------------TCACTA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CGCATGACAGTGAAAGAATATCGTCA------------------------ chr5A_1 CGCATGACAGTGACAGAATAC----------------------------- chr5A_487 CGCATGACAGTGACAGAACAG----------------------------- chr5B_492 CGCATGACAGTGACACAGC------------------------------- chr5D_551 CGCATGACAGTGAAAGAATATCGTCACAATCGGAACTTACCTAGTAATTA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 ATTGATTAAGCAACCCAAATCTGAATTAATTGATTAAGCGACCCAAATCT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 GAATTTGCCCTTCTACCTAGTAATTAATTGATCAAGCAACCAAGTTCTGC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 ATCTTTTCCATGCGTGCATGAACTTTCCCAGCTACTCTTCACCTGCTCCG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 ACGACAACAACGACCAGCGGTCGCGCTGAAGTCAACTTAAGTAAATCACC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 ACACAAAGCAGGCCAAGGAAGACGCGGCAGCAGCGGCAGCCAAGGCGAAG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 GAGGAAGAAGAGGCCAAGGAGGCTGAAGCAAAGAAAGTTAAGGAGAAAGA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 GGAGGCGGAGGTGAAGAAAGCCAAGGAGGAAAACAAAGGGAAGGACAAAG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 CACCGGAGGAAGGCAATGGAGACATCAAGGAAAGTGACAAAGTGAAGTGA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 AATCAAGAAAGAAAGCCAAGGAAAACAGAATGAGCTTGTTCACTAGTACA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 GAAATAAAATGCGGTGTGGAATATTATGCGTCGCATCTCCCATTTGTAAT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 ATGTGCCCCCTTACGTATATAGATATTTGTTTCATCTCTCATTTGTAATA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 TTTCCGATAAGACTATACAAAATGCTAACAAGACCCATTCGCTTTACCTA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 -------------------------------------------------- chr5D_551 CACCAAAATGGCAACAAGTTTTTCTATAGGGAATTAAACCTAAACATGGC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 --------------------------------------------CAATCG chr5A_1 ------------------------------------GCAATTAGCAATCG chr5A_487 ------------------------------------GCAATTAGCAATCG chr5B_492 ----------------------------------ATGCAACTAGCAATCG chr5D_551 ATAAGAAGCTTCCCTACCATTTCACCAACACAATATGCAACTAGCAATCG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 GAACTTACCTAG---------TAATTAATTG------ATTAAGCAACCCA chr5A_1 GAACCTACCCTGCTCCTTCATTAATTAATTG------ATTAAGCAACCCA chr5A_487 GAACTTACCCTGCTCCTTCATTAATTAATTG------ATTAAGCAACCCA chr5B_492 GAACTTACCCTGCTCCTTCCAG--TTAATTG------ATTAAGCAACCCA chr5D_551 GAACTTACCCTGCTCCATCCAG--TAATTGATTGATTATTAAGCAACCCA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ---------SS--------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 AATCTGAATTAATTGATTAAGCGACCCAAATCTGAATTTGCCCTTCTACC chr5A_1 AATCCGG-----------AAGCAACCAAGTTCTGCATTTTTTTCCATGCG chr5A_487 AATCTGGATT---------------------------------------- chr5B_492 AATTTGAATT----------------------------TGCCTTTCCACC chr5D_551 AATCTGAATT----------------------------TGCCCTTCCACC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ----------SSSSSSSS----S---S-SS----S--------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------TGATTAAGCGACCCAAATCTGA--------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TAGTAATTAATTGATCAAGCA----------------------------- chr5A_1 CGCATGAGGTTACCCGGCTTTGATAGCTCATCTTCACCTGCTCCGACGAC chr5A_487 -------------------------------------------------- chr5B_492 TAGTAATTAATTGATTAAGCA----------------------------- chr5D_551 TATTAATTAATTGATTAAGCA----------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ---------------S---------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ------------------ACCAAGTTCTGCATCTTTTCCATGCGT-GCAT chr5A_1 CACAACGACCACCGGTCGACCAAGTTCTGCATTTTTTCCATGCGC-GCAT chr5A_487 -------------------------------------------------- chr5B_492 ------------------ACTAAGTTCTGCATCTTTTCCATGCGTTGCAT chr5D_551 ------------------ACAAAGTTCTGCATCTTTTCCATGCGT-GCAT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 GAACTTTCCC---------AGCTACTCTTCACCTGCTCCGACGACAACAA chr5A_1 GAAGTTACCCGGCTTTGATAGCTCATCTTCACCAGCTCCGACGACCACAA chr5A_487 -------------------------------------------------- chr5B_492 GAACTTACCCAGCCCTGATAGCTACTCTTCACCTGCTCCGACGGCAACAA chr5D_551 CAACTTTCC--------ATAGCTACTCTTCACCTGGTCCGACGGCAACAA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CGACCAG---CGGTCGCGCTGAAGTCAACTTAAGTAAATCACCAGACAGA chr5A_1 CGACCAC---CGGTCGCCCCTAAGTCTACTTAAGTAAATCAGCACCCAGA chr5A_487 -------------------------------------------------- chr5B_492 CGACCAC---CGGTCGCGCTCAAGTCAACTTAAGTAAATCACCAGCAT-- chr5D_551 CGACCACCACCGGTCGCGCTGAAGTCGACTTAAGTAAATCACCAGACAGA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ------S------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 ACTCCAGCATTATATATAAACGCACACGAACAAAGATCTCCAGCGTTGCA chr5A_1 ACTCAGGAACTATATATACACTACAC---ACACAAATCTCCAGCGTTACA chr5A_487 -------------------------------------------------- chr5B_492 --------------TATATACACACACGAACAAGTGGCATC--------- chr5D_551 ACTCCAGCATTATATATAAACGCACACGAACAAAGATCTCCAGCGTTGCA chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 TCAAGAAGAAGAAGAGAGCTAGCCGGGCATGGCAGCAATGGTGGAGAAGT chr5A_1 TTAGC---AAGAAGAGAGCTAGCCAGCCATGGTGGCGATGGTGGAGAGAT chr5A_487 -------------------------------------------------- chr5B_492 -----AAGAAGAAGAGAGCTTGCCGGCCATGGCAGCGATGGTGGAGAGGT chr5D_551 TCAAGAAGAAGAAGAGAGCTAGCAGGCCATGGCAGCGCTGGTGGAGAGGT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs --------------------------S---------S----------S-- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 GGGCAGGGTTGGGTTCGGCCATGGCGAGCATCATCTTCCTG--------- chr5A_1 GGGCGGGGTTGGGGTCGGCCATGGCCAGCATCATCTTCCTC--------- chr5A_487 -------------------------------------------------- chr5B_492 GGGCGGGGTTGGGC--------GGCGAGCATCATCTTCCTCGGGTCCGCT chr5D_551 GGGCGGGGTTGGGGTCGGCCATGGCGAGCATCATCTTCCTG--------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ----S--------S------------------------------------ forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGAGCCGTTTTATGAAGCTTTCCTTCGATACAAGCACTTCAAGCACGGTC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TTTGGCAAAACTCACATTTGTTAGTCCACGCACGTGATCACCTTTGAGAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GACTTTACAAAGATCTCATATTGACATGGGCTAGTCGGTGATGCCAAAGC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CAACCCACATCAACTTTAGCCATTAGGCAAGTCGCGGTCTTAGTGGTAGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGGTCGTTCCGAAAAGTTCACCACATAGAGACCGTTCTCGACATGCCCAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CAAAGGCTACTTTAAGAATATTGCTCCACAAAAGGGCCACGGTGTCAAGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TCAAAGAATGTTGCAAAGCCCATAATTGCAAGTTGACGAATGGAAAGTAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATTGTATGCAAGAGACTCAACAAGTATGAGCTTCCCAATAGTTAAATCTT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GAGAGATGACTACCTTGCCAAGTCCCAATACTTTAGAAGTTGAGGCATCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GCAAATTAAAGATGGGTGGGCATAGATGGAATTGGTGCACATTCACCACC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAGTCCTTACTCCCGGTCATATGATTTGTTACTCCACTATCAAGCAACAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TGACACTCCACCGGAAAAAAAAACTCCTACAAGAGATCAATGCTTGGATT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TAGGTACCCATTTTTGAATGGGTCATTTGACGTTAGCAACAAGGGTCTTA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGAACCCAAATAGACCATTCAATGTACTCATAGTAAGAACCAACGAATTT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGCATAAACATGCCCATCACTAGCACGGCATAAACGTCATCGTCAAGAAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CGCCAGCGCCGCCTCTTCACAAACTGGGACGTGGATTTTTTTGAACATCT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GCACCCGGGCCCAGCTATCCTGGCTGTCCAATATTGCTTTAAGATCCGTG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CAACACAACTAACTTTCTATATGAAATTTTCTCTTTTTTGTTTCTCTCAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GTAGAACATGTCTTGAACTCAAACCTTTGCAGCGTGGCAAAACTTTCTTT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TTAGAATCTAGGATAAATCTTTCAGAATTTTTTGTCAAACATAAATATAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAAATATGATTTTTTTATCTAGAAAATCATAATTTGTATATTTATATTTG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATAAAAAAATCTGAAAGATTTATCCTAGATTCTAGATAGAAAACTTTGCC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATGCTACAAACGTTTGAACTTCAAAACATGTTTTATGTGAGAGAAACAAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAAAAGAAATATGTTTACATGAATCACGATGCGCAGAATGGATGGCTAGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TAGGGAGGACCTGAGTGCAGGTGTTCTATTATATGCTTTCGTCACCAACT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GTGGCGGTAAACGGAAGCGCTACCTTCGCAATAGCGTCTGGGACTATGTT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAGTTTATGCACCCGGCCACGTTCGACACGCTCGCCATGGATACCAACCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GAAGGAGGCCATCATCGACGACCTCATCGCATTCAAGGAGGGCAAGGAGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ACTACACAAAGGTCGGCAAGGCATGGAAGCGGGGTACCTATTGTACGGCC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CACCCGGCACTGGTAAGTCCACCATGATCGCCGCCATGGCCAATTTCCTT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GATTACGACGTATATGACTCGAGCTTACGTCGGTCAAGAACAAAACCGAG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TTGAGAAAGCTCTTCATCGAGATGACAAGCAAGTCCATCATCGTCATCGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGACATCGATTGCTCCATTGACCTCACTGGTAAGCGCCGCAAGGGCAAGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGGCCTCAAGTAACAAGGACTCTGACAATGAATATGAAGCGGACCCGACG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GAGCCACAGAAGGACGATGAAAGCAAGGTGACGCTCTCAGGCCTACTCAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CTTCATCGACGGGCTATGGTCAGCAAGCGGCGGTGAGCAGATCATCATCT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TCACCACCAACCACAAGGAGAAGCTGGACCCGGCGCTAATCCGGCGGGGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGGATGGACAAGCACATCGAGATGTCCTACTGCCGCTTCGAGGGCTTCAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GGTTCTCGCCAAGAACTACCTAGACATCGTCGAGCATGTGTTGTTCGGCG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGATCCAGCAGCTTCTCGAAGAGACCGACATGTCACCGGCCGATGTGGCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 GAGAACCTGATGCCCATGTCAAAGAAGAAAAAGAAGGACCCCAACATGAG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CTTGGCAAGCCTTATCGCCGCGCTCAAACAGGCGAAGAAAGATGCTGCCA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CGGCTGCGGCAGCGGCAAAGGCCAAGGAGGAAGAGGAGGCAGAAGCAAAG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAATCCAAGGAGAAAGAGGAACCCAAGGAAGACAAATGAAAGGTAAAAAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CATGACAGGAAGCCAGGTAGCCAACCAAGACATCAAACAAGTTTGCTTGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TCACTAGTGCTCGATTACAACAACAAAAAGGATGTATAGTGTTTGTTCAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATAAATTATGTATCACTCAGCTGGAATAAAATGGTTTTGCTTTCTCTTCT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CAATGGTTAATTCACACGGGAAGTTACCTTCAAAAAGTTGCTATATCTGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CACCACAATGCATAATTCTAATATGATACTGTTGCAAGTACACAGCGAAC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATTTTCCTCATTTCTCTACAAAAGACAGCATTCTGGCGTATATAACCTGC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CTACAGAACTTGCTCGTCCCAACGAATAATACGAGCGGTACAAAGACAGC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ATTCTGGCGTATATTCTAACATGATCATGAAGGAGAGTGTGAAGCCAAAG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGAAAGGCAAATGGAGGCACAAAACAAAATATGTATCCCTCAACAAAGAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TAATAATGATGATAATTCCTGTGTATGTATGGAATAGTACTACAATACGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AATGCCAACCTCTCACTCCCCTGTCTCAAACGTACTGGGCAAAGGGAATC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CACAAGTTTTTTCCATGCGTGCATGGACTGTAGATTCTTCTCAGCTCTGA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 CAGCTCCTCCTCACCTGCTCCGACGACGGCAAAGAAGAACACAAATCTGT chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 TCCGATGACGACAAAAGGTAAAGTCGAACATGCTCCGACGACGACGACAA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AAACGAAGACGGAGACGAAGACTCAGGTCAACCTAAGTAAATCACCCACA chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 ACTCTCCCGCATTATATATACACATATGCAGGCGCTTCCAGTGCAGATCG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGCTATAGCATTCCAACAAGAAAGCCTCAAGACACAACATCAAGAGGTCC chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -------------------------------------------------- chr5A_1 -------------------------------------------------- chr5A_487 -------------------------------------------------- chr5B_492 AGCCATGGCGCCCATGGTGGAGTGGTTGCCATGGTTTGGATCGGCGGTGG chr5D_551 -------------------------------------------------- chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 -----------------TGGTCCATGGTGCAGAACCACGTCCCGGTTACC chr5A_1 -----------------TGGTCCATGGTGCAGAACCACGTCCCGGTCACC chr5A_487 -------------------------------------------------- chr5B_492 CGAGCGCCATCTTCTTATGGTCCATGGTGCAGAACCACGTCCCGGACACC chr5D_551 -----------------TGGTCCATGGTGCAGAACCACATCCCGGTTACC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CTCCGCCTCTTCCTCACCACCTGGGCCGCCAAGCTCGCCGCCTGCTTCAG chr5A_1 CTCCGCCTCTACCTCACCACCTGGGCCGCCAAGCTCGCCGCCTGCTTCAG chr5A_487 -------------------------------------------------- chr5B_492 CTCCGTCTCTACCTCACCACCCGGGCAGCCAAGCTCACCGCCTGCTTCAA chr5D_551 CTCCGCCTCTACCTCACCGCCTGGGCCGCCAAGCTCGTCGCCTGCTTCAG chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs ----------S--------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CCCCTACCTCCAGATCACCATCTTGGAGAACAGCGCCGAGCGCTTTCAGC chr5A_1 CCCATACCTCCAGATCACCATCTTGGAGAACAGCGCCGGGCGCTTTCAGC chr5A_487 -------------------------------------------------- chr5B_492 CCCTTACCACGAGATCACCATCTCCGAGTACGGCGCCAAGCGATTCCAGC chr5D_551 CCCCTACCTCCAGATCACCATCTTGGAGAACAGCGCCGAGCGCTTTCAGC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -------------------------------------------------- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 AAAGCGAGTTCTTCTACGCCGTCAAGGCCTACCTCAGCGACGCGTGCTCC chr5A_1 AAAGCGAGTTCTTCTACGCCGTCGAGGCCTACCTCAGCGACGCGTGCGCC chr5A_487 -------------------------------------------------- chr5B_492 GTAGCGAATTTTTCCTCGCTGTCGAGGCCTACCTGAGCGATGCCTGTGCT chr5D_551 AAAGCGAGTTCTTCTACGCCGTTGAGGCCTACCTCAGCGACGCCTGCGCC chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -----------------------S-----------------------S-- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 -------------------------------------------------- chr5D_1_TraesCS5D01G004700 CGCCGCGCCCGTAGACTCAAGGCCGAGCTCAGGAGTGACAGCAGTAACTT chr5A_1 AGCCGCGCCCGCAGGCTCAAGGCCGAGCTCGGGAGCGACAGCAGTAACCT chr5A_487 -------------------------------------------------- chr5B_492 CACCATGCACGGAGGCTCAAGGCCGAGCTCGGCAAGGACAGCA------- chr5D_551 CACCGCGCCAGCAGGCTCAAGGCCGAGCTCGGGAGCGACAGCAGCAACCT chr5D_1003 -------------------------------------------------- chr7D_1005 -------------------------------------------------- chr7B_1005 -------------------------------------------------- chrUn_1005 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7A_1007 -------------------------------------------------- chr7D_1465 -------------------------------------------------- chrUn_1465 -------------------------------------------------- chr4A_1634 -------------------------------------------------- SNPs -----------S--S---------------S----S------------S- forward_386 -------------------------------------------------- reverse_2493 -------------------------------------------------- forward_401 -------------------------------------------------- reverse_5864 -------------------------------------------------- input_sequence_48059 ------------------- chr5D_1_TraesCS5D01G004700 GCAGGTCTCCGTGGACGAC chr5A_1 GCAGGTCTCCGTGGACGAC chr5A_487 ------------------- chr5B_492 ------------------- chr5D_551 CCAGGTCTCTGTGGACGAC chr5D_1003 ------------------- chr7D_1005 ------------------- chr7B_1005 ------------------- chrUn_1005 ------------------- chr7A_1007 ------------------- chr7A_1007 ------------------- chr7D_1465 ------------------- chrUn_1465 ------------------- chr4A_1634 ------------------- SNPs ------------------- forward_386 ------------------- reverse_2493 ------------------- forward_401 ------------------- reverse_5864 -------------------