>input_sequence_47992
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-----------------------------------------------------------------------ATGCAGCAG
GGGAGGACGAGGAGCCGCCCGCGCATCGCCGGCGCCCGGCCGGGGCCCTCCTCCTCGCCGTCGCGGCGTGGCGGGAGCAG
CGGCGGCGAGGGCGCCGGACGGGGGCTCCGGCTGCACCGGCTGCCGGTGCAGCTGGCGCAGGGGCCGCGGCCGCGGAGGC
GGGCCGACGGGAAGAG---------------------------GGCGCTCTGGTGGCGCGACGACGCCCGCGTCCACCCC
GTGA---CCCATCCGCCTTCCCCGCCGCCGCCGCCGCCGCTCGACCGCCCGCACACCTGCTACGACGTCCTCGCGCCGGA
CTCCCCCTTCGCCTCCTCCTCCCTGCTGCTGCTGCCGCCCGATCGTCGCACGCCATGGGAGGTACGGTACGGTCCGTGAA
CTGAGGAGCGCG-CGCGCGCA--TTCATTTTAGTTCGCGGGGTGAACTGGATGGTTTTTCTCTGTATGTA-GGAGGCCAA
GGTGGTGGTGAACGTGACGGTGGAGGGGAGCCCGGGGCCGGTGAGGGCGATGGTGAGCCTCGGCTCCAGCATCCGGGACG
CCATCGCCGCGGTGCTGGAGCGGTACCACCGGGAGGGGAGGAGCCCCCGGCTGGACCCGGCCTCCGCCGACTCCTTCCAG
CTACATCACTCTCACTTCTCCCTCCAGAGTAAGCTAGCCATTCATCGTTTTTGACCTAATTTAATGG-----ATATGCCA
TGCCAATTTGCCGATCAAATGGGGATTAATTAGTCTAGT----------TTTCTGGTGCTAAGGATGTGGTTGTTTGATT
ATGTTGCTTGTGACACAAACCATTTTCAAGTGCTGTCACTGTCACAGCAAGCGAAATAACTCGCGCCGGACTCCCCCTTC
GTCGGATTATGTTGTTTGTGACACACAAACCATTCATGTGTACTGGGAGGGGATGTTTGAGTCGTCAGAAATTCAGAATA
TATTGCAC------------------------------------------------------------------------
-----CTGCCTATTTGGTTTACTCATTATTGTCTTGCTTGAAATTTATCTCTCCTACCACTTCCTTCTTTGAGGATTCAG
TAATGTAATATAGGCCA------ATAGATTAGGATGTAGACAAACTTATTTGGTACTA------GTTTTATGTAACGACT
TCATTTTTTAGATCATCTATGCAAGGACTTCCAAAATTATTACT---CTGATGAAAAGTCTGTGAACATAGGGTAGAGTA
TTTTAGCATAGGCGGCTAATGGTAACATCATTCAGAGAGCTTCTACACTCACAATTTAGTTGCTCAGTCCAAGC-GAATA
AAAACTATGAAATCAGCATTTCAAAATTTAACTTCGGTCGAGTGGACTAGTAACACCTTGAGTTTTCTTTTCTTGACAGG
TTTAAACAAGAACGACAAGATGAGCGAAGTGGGCGGCAGAAATTTCTACCTGCACAAAAACGACGGAAGCAACGGGCTTG
TACCTCACAGGGAACAGGAGGCGGGTGTGCATTCAGGTGGTGGTGAAACTACAGAGAGCCGTGGAGGGCAGCTTGCCGGT
GTCCCATACCACCACCAGCTCCTCGCCATTGTCATGAAGAAGCTGGATAAAATCGGCAGGCGGACCAAGAGGATTTGGAG
GCTCCTGACCTGTGACTGCACATGA-------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G292300
TCCAAGATAAAATGTAATTAATGAAATTAATGTTGCTTCAAGAATAAATTACAATTAATGTAATCAATATTTTTTTAAAT
CAATTGCAATTGATGTAATTATTATTGTTTTCAATTTAGCACGATGCCATGGACAGTTGGATACATCATCAGAGACATTC
TCGTCGACCACGAGGCGTCTGATGATTTTGTCAATCCTAAGATGCGATGCCGGCTCAGTATCTCGAGAATGCTCATAGGG
ATAAGACGTGTGACCGCGTGCGTTGTTAGAGGTGAGTATATATGTACATAGGCGTCTGCGATTGTACTGGCGCGGGGTGT
TGAATATAAGCACACCGACGTACTTCAGTTGTAAGTAGACACCGGTGGTAGAGGCAGACGAAGTGCTGAGATAATGGTAT
AGTA---ACTATTTTCTGTTGATTT---TAAATAAAATGGATGGGTTGACTTTGACGCACACCGACGCACGACCGCCGC-
GGGCCCTTATTTTGTTTGGGTCCGCCACCGTCCAAACCGCGAAGACGAAAACGACCCACACTATATCCGGACCGAATCTT
GG-ATGCAGCCACAAGCCCACAAGCAACGAATCCTGAACCCTT--------CCC--------GCACGACCCTGCACTGTC
TCGTGC-------CGCCCACCCGCGCCG----CACCTGCACTGTC---------CCTTCGCCCGGTTTCCCTCCGGTTTG
CC-TCCCCTGCTCCCGGCTCACGCGACGGCCCTATCCCCCAGCGACACGCCGAGCCCAGGCTCAGCGGCGTCCCGTGCGC
CGGGTCCACACCA----------------------------------------GGGCAGCACCCGCCGCGAAGCTTCCTC
CTCTCCTCTC----------CTCTCCCGAGTTGCACAAAGCATAAAGAAGCTCGCCGTGTCGGCAAACCGGAGGTTGCGG
CCGCCCGACGACACACACCAC-------CACCGACCAGCGCAACGCAACAATCTCCAAAGTCCAAACCCCAAACTGCACT
CCACTCACTCCACACGCGCGCGCGCGCGCACGATCGTCTCGTCGGCC---------AGCCAGAGAAAGAAGATGCAGCAG
GGGAGGACGAGGAGCCGCCCGCGCATCGCCGGCGCCCGGCCGGGGCCCTCCTCCTCGCCGTCGCGGCGTGGCGGGAGCAG
CGGCGGCGAGGGCGCCGGACGGGGGCTCCGGCTGCACCGGCTGCCGGTGCAGCTGGCGCAGGGGCCGCGGCCGCGGAGGC
GGGCCGACGGGAAGAG---------------------------GGCGCTCTGGTGGCGCGACGACGCCCGCGTCCACCCC
GTGA---CCCATCCGCCTTCCCCGCCGCCGCCGCCGCCGCTCGACCGCCCGCACACCTGCTACGACGTCCTCGCGCCGGA
CTCCCCCTTCGCCTCCTCCTCCCTGCTGCTGCTGCCGCCCGATCGTCGCACGCCATGGGAGGTACGGTACGGTCCGTGAA
CTGAGGAGCGCG-CGCGCGCA--TTCATTTTAGTTCGCGGGGTGAACTGGATGGTTTTTCTCTGTATGTA-GGAGGCCAA
GGTGGTGGTGAACGTGACGGTGGAGGGGAGCCCGGGGCCGGTGAGGGCGATGGTGAGCCTCGGCTCCAGCATCCGGGACG
CCATCGCCGCGGTGCTGGAGCGGTACCACCGGGAGGGGAGGAGCCCCCGGCTGGACCCGGCCTCCGCCGACTCCTTCCAG
CTACATCACTCTCACTTCTCCCTCCAGAGTAAGCTAGCCATTCATCGTTTTTGACCTAATTTAATGG-----ATATGCCA
TGCCAATTTGCCGATCAAATGGGGATTAATTAGTCTAGT----------TTTCTGGTGCTAAGGATGTGGTTGTTTGATT
ATGTTGCTTGTGACACAAACCATTTTCAAGTGCTGTCACTGTCACAGCAAGCGAAATAACTCGCGCCGGACTCCCCCTTC
GTCGGATTATGTTGTTTGTGACACACAAACCATTCATGTGTACTGGGAGGGGATGTTTGAGTCGTCAGAAATTCAGAATA
TATTGCAC------------------------------------------------------------------------
-----CTGCCTATTTGGTTTACTCATTATTGTCTTGCTTGAAATTTATCTCTCCTACCACTTCCTTCTTTGAGGATTCAG
TAATGTAATATAGGCCA------ATAGATTAGGATGTAGACAAACTTATTTGGTACTA------GTTTTATGTAACGACT
TCATTTTTTAGATCATCTATGCAAGGACTTCCAAAATTATTACT---CTGATGAAAAGTCTGTGAACATAGGGTAGAGTA
TTTTAGCATAGGCGGCTAATGGTAACATCATTCAGAGAGCTTCTACACTCACAATTTAGTTGCTCAGTCCAAGC-GAATA
AAAACTATGAAATCAGCATTTCAAAATTTAACTTCGGTCGAGTGGACTAGTAACACCTTGAGTTTTCTTTTCTTGACAGG
TTTAAACAAGAACGACAAGATGAGCGAAGTGGGCGGCAGAAATTTCTACCTGCACAAAAACGACGGAAGCAACGGGCTTG
TACCTCACAGGGAACAGGAGGCGGGTGTGCATTCAGGTGGTGGTGAAACTACAGAGAGCCGTGGAGGGCAGCTTGCCGGT
GTCCCATACCACCACCAGCTCCTCGCCATTGTCATGAAGAAGCTGGATAAAATCGGCAGGCGGACCAAGAGGATTTGGAG
GCTCCTGACCTGTGACTGCACATGACTCTGATCCTGTGGATGTTGATGGTAGCCTAACAGCCATCGTATACTGTGACTG-
------TCTGGTGTAGTAGGCTAGCACTAGTAAGTTAGGTTAGAA-TCGGTGCGCGGCGCTGGTGCTACTGCTATTGATT
GATGATAAAGAAGGCACGCGGCGTGGTAACTAAGGTTATCCTCGTGTTGACGTGTTGATAGATTGGGTTGATCGGGTCAG
GAAGTATAAGGTATAGAAAGAATTCCTTATTTAACATTGTGTATAAATTTTATGCCTTATTTGACATCGATAAATAGTTT
TTTTTCTGTCTAACAACCAACGAGTCTAAAATTTATGCCTTTTATAACACTCATTATGTCCATTTTAAGTCTAAATGGCA
CCTAAAAAGACCCTTTTGCCGTCATGTGGTATGTTTGTGGGCATACGGCCTCACACTAATATTGCTGTGTGCTACTGTCC
TCACACTAATGTTGCGTTTATGTTCTACTACACCGCGCACACACATACCATATTAAGGGCAAAAGGATCTTTTCAGGTGC
CATTTAGGCTCAAAATGAACGAAGTGTCATAAAAGGCACAAATTTAGACTCGTTGTTAGATGAGGAATAAATAGTTTTTC
AGTGTCAAATAAGGAAACGAAATTTAAGATAATGTTAAATAAAGAATTGTTCCTAAGGGATACAGTGGAGCACACGTACG
CTTTGCAGCCCACACACACCACTCGTGATCTTACGACTTATCCTTGCATAAGCAATTAAGCACTAGTGATTGTGTGGCTG
CAAGTGCAAGGTGCGCTCTCGACTAATATAAATCAATACAAACATATTCCCACCATCCAGAATTACTTGTCGCGAAAGTG
AATAAAAATAGTTGTAACTAAAATACATTCAAATACATTCATTTCTCTGCTAAGTATTTTAGACGGAGGGAGTATTAGAT
TATTCATGACTCAAGGGTCAATGACAGCGTAGGTTACGGGTCATGTT---GAGGAGAATTTTAGTTTATTTTCAAG
>chr5D_355
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTAGACACCGGTGGTGGAGGGAGACGAAGCGCTGAGATAATGGTGT
AGTAAATACTATTTTCTGTTGATTTAAATAAATAAAATGGATGGGTTGACTTCGACGCACACCGACGCACGACCGCCGC-
GGCCCTTAATTTGTCCC-GGTCCGCCACCGTCCAAACCGCGAAGACGAAAACGACCCACGTTATTTCCGGACCAAATCTT
GG-TTGCA--------CCCACAAGCAACGAATCCTGAACCCTT--------CCTTCCTTCCTGCACGACCCTGCACTGTC
TCGTC--TCGTGACGCCCACCCACGCCGGCCGCACGCGGAGAATCCAACGCCTTCCTTCGCCCGGTTTCCTTCCGGTTTG
CC-T-CCCTGCTCCCGGCTCACGCCATGACCCTATCCCCCGGCGACACGCCGAGCCCAGGCTTGGGAGCGTC---TGCAC
CGGGTCCATCCTC----------------------------------------TTGGAGCACCAGCCGCGAAGCTTCC--
---TCCTCTC----------CTCTCCCGAGTTGTACAAAGCATAAAAAAGCTCGCCGTGTCGGCAAACCGGAGGTTGCGG
CCACCCGACGACA-------C-------CACCGACCAACGCAACACAACAATCTCCAAACTCCAAACTGCACTC------
-----CACTCCACACACGCGCGCGCGCGCACGATCGTCTCGGCGACCAGGGTCTCTAGCCAGA----GAAGATGCAGCAG
GGGAGGAAGAGGAGCCGCCCGCGCATCGCCGGCGCCCGGCCGGGGCCCTCCTCCTCGCCGACGCGCCGGGGCGGGACCAG
CGGCGGCG---GCGCCGGACGGAGGCT---------CCGGCTGCCGGTGCAGCTGGCGCAGGGTCCGCGGCCGCGGAAGC
GGGCCGAGGCGAAGAGGGCACTCACGCGCTCCGCCTCCGAGCCGGCGCTCTGGTGGCGCGACGACGCCCGCGTCCACCCC
GCGCCGCCCCACCCGCCGTCC---CCGCCGCCGCCGCCGCTCGACCGACCGCACACCTGCTACGACGTCCTCGCGCCGGA
CTCTCCCTTCGCCTCCTCCTCCCT---GCTGCTGCCGCCCGATCGTCGCACGACCTGGGAGGTACGGCACGGTCCGTGAA
CTGACGAGCGCG-CGCGCATTCGTTCATTTTAGTTCGTGGGGTTTACTGGATGGGTTTTTTTTCTTCTGTGGGAGGCGAA
GGTGGTGGTGAACGTGACGGTGGAGGGGAGCGCGGGGCCGGTGAGGGCGATGGTCAGCCTCGGCTCCAGCATCCGGGACG
CCATCGCCGCGGTGGTGGAGCGGTACCACCGGGAGGGGAGGAGCCCCCGGCTGGACCCCGCCTCCGCCGAGTCCTTCCAG
CTCCATCACTCTCACTTCTCCCTCCAGAGTAAGCGAGCCATTCATCCTTTT-CACTTGGTTTAATGG-----ATATGCCA
TGCCAATTTGCCGATCAAATGGGGATTAAACTGTACTGGTGTGTTACAGTTTCTGGTGCTAAACATGTGGTTGTTTGATT
CTGTTGTTTGTGAAACAAGCCATTTTCAAGTGCTGTCACTGTCACAGCAAGTTCTGC-----------------------
----------------------------ACCATTCATGTGTACT-----GGGATGTTTGAATCATCCGTAATTCAGAATA
TGTTAAGAACTACTAATGATGTTTAGTAATTTTGTTAGTTATGCAGG---AAGTCTCTGACAAACCGTCTTCTTTCATGT
GGCATCTTGCTATTTGGTTTACTCATTTTTGTCTTGCTTGAAATTTATCTCTCCCACCACTTCCTTCTTTAAGGATTCAG
CAATGTAATATAGGCCAGTCGTCATGGATAAGGATGTAGAC-AACTTATTTGGTACTA------GTTATATGTACCGACT
TCTTTTTCTAGACCATATATGCAAGGACTTGTAAAGTTATTACT---CTGAAAAGCCTATG-------------------
-----------------------AACATCATTCAGAGAGCTTCTTCACCCAAAATTTAGTTGCTCAGCCCAAAGAGACTA
TAAATTATGAAGTCAACATTTCCAAATTTACCTTTGGTC---TGGCGAAGTAACATCTTGGGTGTTTTCTTTA--ACAGG
TTTAAACAAAAACGACAAGATCGGCGAAGTGGGCGGCAGAAATTTCTACCTGCACAAAACCGGCGGAAGCAACGGGCCTG
CGCTTCAGAGGGGAGAACCT---GGTGTGCATTCAGGTGGTGGTGAAACTAGACAGAGCCATGGAGGGCAGCTTGCCGGT
GTTCCATACCACCACCAGCTCCTCGCCATTGTCATGAAGAAGCTGGATAAAATCGGCAGGCGGACCAAAAGGCTTTGGAG
GCTCCTGACCTGTGACTGCACATGA--CTGACCCTGTGGATGTTGATGGTAGCCT------CATCATATGCTTTGACTGT
CTGGTCTCTGGTGTGGTAGGCTAGTACTAGCAAGTTAGGTTAGAAATCAGTGCGCGGGGCTGGTGGCACTGCTATTGATT
GACGATAAAGAAGGCACGCGGCGCGGTAACTCTAGTTATCCTCGTGTTG--------ATAGATTGGGTTGATCAGGTTAG
CAAGTTATAGGTATA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5B_420
--------------------------------------------------------------------------------
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----------------------TTT---TAAAAAAAGAGGATCGGTTGACTTTGACACACACCGACGCACGACCGCCGCG
GGCCCTTAATTTGTCCC-GGTCCGCCACCGTCCAAACCGCGAAGACGAAAACGACCCACACTATACCCGGACCAAATCTT
GGTTTGCA--------CCCACAAGCAACGAATCCTGAGTTCCTGACTGAACCCTTCCTTCCTGCACGACCCTGCACTGTC
TCGTGAGTCGTGACGCCCACCCGCGCCG----CACGCGGAGAATCCAACTCCTTCCTTCGCCCGGTTTCCTTCCGGTGTG
CCGT-CCCTTCTCCCGGCTCACGCGACGACCCTATCCCCCGGCGACACGCCGCGCCCGGGCTCCGCAGCGTCCCGTGCAC
CGGGTCTACACAGGGGCGGCACCCGCCGCGTCCCGTGCACCGGGTCTACACAGGGGCGGCACCCGCCGCGAAGCTTCC--
---TCCTCTCATCAACTCTCCTCTCCCGAGTTGTCCAAAGCATAAAGAAGCTCGCCGTGTCGGCAAACCGGAGGTTGCGG
CCACCCGACGACA-------CACACCACCACCGACCAACGCAACGCAACAATCTCCAAACCCCAAACTGCACTC------
-----CACTCCACACACGCGCGCGCGCGCACGATCGTCTCGTCGACC---------AGCCAGA----CAAGATGCAGCAG
GGGAGGAAGAGGAGCCGCCCGCGCATCGCCGGCGTCCGGCCGGGGCCCTCCTCCTCGCCGACGCGCCGGGGCGGGACCAG
CGGCGGCGCAGGCGCCGGGCAGAGGCT---------CCGGCTGCCGGTGCAGCTGGCGCAGGGACCGCGGTCGCGGAGGC
GGGCCGAGGGGAAGAGGGCGCTCACGCGCTCCGCCTCCGAGCCGGCGCTCTGGTGGCGCGACGACGCCCGCATCCACCCC
GTGA---CCCATCCGCCGTCC---CCGCCGCCGCCGCCGATCAACCGCCCGCACACCTGCTACGACGTCCTCGCGCCGGA
CTCCCCCTTCGCCTCCTCCTCCCT---GCTGCTGCCGCCCGATCGTCGCACGCCCTGGGAGGTACGGTACGGTCCGTGAA
CTGAGGAGCGCGGCGCGCGCA--TTCGTTTTGGTTCGCGGAGTGAACTGGATGGGTTTTCTCTGTACGTA-GGAGGCGAA
GGTGGTGGTGAACGTGACGGTGGAGGGGAGCGCGGGGCCGGTGAGGGCGATGGTCAGCCTCGGCTCCAGCATCCGGGACG
CCATCGCCGCGGTGGTGGAGAGGTACCACCGGGAGGGGAGGAGCCCCCGGCTGGACCCGGCCTCCGCCGAGTCCTTCCAG
CTACATCACTCTCACTTCTCCCTCCAGAGTAAGCTAGCCATTCATCATTTT-GACTTAATTTAATGAACGGAATATGCCA
TGCCAATTTGCCGATCAAATGGGGATTAGTCC----AGT----------TTTCTGTTGCTAAAGATGTGGTTGTTTGATT
CTGTTGTTTGTGAGACAAACCATTTTCAAGTTGTGTCACTGTCACAGCAAGTTCTGC-----------------------
----------------------------ACCATTCATGTGTTAT-----GGGATGTTTGAATCATCCGTAATTCAGAATA
TGTCAAGAACTACTAATGATGTTTAGTAATTTTGTTAGTTAGTATGGGGTAAGTCTCTGACAAACCGTCTTTGTTCATGT
GACATCTGGCTATTTGGTTTACTCATTTTTGTCTTGCCTGAAATTTGTTTCTCCCACCACTTCATTCTTTAAGGATTCAG
CAATGTAATATAGACCAATCGTTACGGATTAGGATGTAGACAAACTTATTTGGTACTACTACTAGTTCTATGTAACGACT
T---TTTTTAGAACATGTATGCAAGGACTTCTAAAATTATTACTACTCTGAAAAGTGTATG-------------------
-----------------------AAGCGAGCTTCTTCAGG--CTTCACCCAAAATTTGGTTGCTCAGCCCAAGG-GACTA
AAAGTTATGAAATCAGCATTTCAAAATTTTACTTCGATCGAGTGGGCAATTAACATCTTGAGTTTTTCTCTC-TGACAGG
TTTAAACAAGAACGACAAGATCGGCGAAGTGGGCGGCAGAAATTTCTACCTGCACAAAAGCGGCGGAACCAACGGGCTTG
CGCTTCAGAGGGGAGAACCT---GGTGTGCATTCAGGTGGCGGCGAGACTACACAGAGCCATGGAGGGCAGCTTGCCGGG
GTCCCATACCACCATCACCTCCTCGCCATTGTCATGAAGAAGCTGGATAAAATCGGCAGGCGGACGAAGAGGCTTTGGAG
GCTCCTCACCTGTGACTGCACATGA--CTGACCCTGTGGATGTTGATGGTAGCCTAACAGCCGTCGTATACTGTGACTG-
------TCTGGTGTGGTAGGCTAGCACCAGCAAGTTAGGTTAGAA-TCGGTGCGCGGTGCCGGTGGTATTGGTATTGATT
GACGATAAAGAAGGCACGCGGCGCGGTAACGAAAGTTATCCTCGTGCTGATGTGTTGATAGATTCGGTTGATCAGGTTAG
GGAG----------------------------------------------------------------------------
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-----------------------------------------------------TAAGGTATATAGCGGAGTGC----ACG
CTTTGCAGTCCACACACATCACTGA-------------------------------TAAGCACTGGTGATTGTGTGGCTG
CAAGTGCAAGGTAGACTCTCGACTAATATAAATCGATACAAATATATTTCCTGC--CCGGAATTACTTGTTGCGAAAATG
AATAAAAATGAACGTAACTAAAATACATCCAGATACATTCATTTCTCTGCTAAGTATTTTGGACGGAGGTAGTGTTAGAT
TATTCACGACTCAAGGGTCAATGACAACGCAGGTTACGGGTCATGTTGAGGAGGAGAATTTTAGTTTATTTTCAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----S--------S--------------S-
--------------------------------------------------------------------------------
--S--S-S----SSSSSS-------------------------------------------------------S------
---S----SSSSSSSS-------------------------------------S--------------------------
-----S-----------------------------SS-S-SSS---------------------------S---------
----S-----------------------S-----------S----------------------S--S-----------S-
-----------SS-----------------------------------------------------------------SS
SSS------------------------------S----------------------------------------------
--S----------SSSSSSS-----------------S---------------------S-------SS--SS-SSSSSS
SSSSS----------S----------------------------S------------------SSSS-------------
-------S----------------------------------------------------S----S--S-------S---
--------SS------------S----SSSSSSSSS---------------------------S----------------
-------S------------------------------------------------------------------------
-----------------S---SSS--------------------------------------------------------
------------------------SSS---------------------------S-------------------------
------------------------------------------------------S-----------S----------S--
-------------------------------S----------------------S-------------------------
--------------S-------------------------------------------------------S---------
----------------------------------------------S----S---S------------------------
------------------------------SS--SS--------------------------S-----------------
S-----S------S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SSSSS-----------S--S--S-S-----------
-S--SSSS------------------------------------------------------------------------
--------S------------------S--------------------------S---------------S---------
S------------------------S-----------------------------------------S------------
--S---------S---S--------------S-------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------S---S--S---------------S-----S---S--
----S----------------------------------------S-S-------S----------S-----S-------
---------------------SS------------------------------------S--S-----------------
SS-S---S----S-S-SSSSSSS------------------------------S------S-------------------
------------------------------------------------------------------------S-------
-------------------------SS----S------------------------------------------------
--------------S---------------S--------------------------S-------S--------------
--S--------------------S---------S----------------S----------------------S---S--
-----SSS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---S--S----SS-SSSS---
--------S---------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------
------------SSS-------------------S-------S-----S--SS-SS--S-----------S------S--
---------SSSS---------------S--S----------------------------S--------S---S------
------S-------------------S--S----------------------------------------------
>forward_1038
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----------------------------------------------------------AGTCCAAACCCCAAACTGCA--
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>reverse_1990
--------------------------------------------------------------------------------
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---------------------------------------------------------------------ACTCCCCCTTC
GTCGGATTA-----------------------------------------------------------------------
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>forward_1975
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------TCACTGTCACAGCAAGCGAA-------------------------
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>reverse_3208
--------------------------------------------------------------------------------
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-------AGACCCTTTTGCCGTCATGT-----------------------------------------------------
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