>input_sequence_47964
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------ATGGTCGTCAAGGAGTTTACCGTTGATCTCAACAAGCCTC
TTGTTTTCCAGGTA----CCAT----CTGCTCTCTCAATATTTGCTTCTTCAC----ATCAATTGTTGCAGCAACTCTTC
TCGGAAATTTTAGG-------TGTGCACATTTCCCATTCCTTTCCCACTTTAAGTTTGTCGTCATTTTGAGCTTGTGGCA
TACAGCCATACACTTCTGAGGTGCTG--------------------AAATGCTG--------------------------
--------------------------------------------------------------------------------
--------------------------AACTGTCAACATTTCAAGTGATGCTTGGTGGACTT--------------TGCTC
TACTCTTCTGAAATAATATGCTGTAGTGGTGAACTTGTGGTTTTACAAGCTTTAACTTATCCGGTGGAGGCTTCTATCCC
TACTCTTCTTCTATCAATATATGATATGCACGCTCGTGCATATTCTAGAAAAAAAAGTTTTAACTTACTGAGAATTGCTT
CTGCCTGACAGTTGAAGTAAACTACT----ACTTTTGACCGTGCTGTGTATTTTG------TGGCTCAAGGTTGGCCATC
TCGAGGAACATTACCAGGAATGGGTTCACCAGCCCATCGTGAGCAAAGAAGGTCCACGCTTTTTCGCAAATGATACCATG
GAGGTAACGCCAATGCGCTCCGGTGTATATATTAACGTCATTGGGGGATTTTGGAAACTGAACTGTCACCATATACGTAA
T--AAATTTCTTTGTGCAGTTCTTGACACGCACAAAGTGGTGGGCTGTGCCAGTCATATGGCTACCTGTCGTCTGCTGGT
TGTTTGCCAAGTCTGTTCGGATGGGTCACACCATTCAGGAAGTAATCTTGATGGCCCTATTTGGGGTGTTTGTTTGGACG
TTGATCGAGTACAGTTTGCACCGCTTCCTGTTCCACATCGAGACGAGAAGCTACTGGTAAGAAGAACTTATCAACCTTCA
CCTGGGAATG-TTTTATCGGGATTCTCCTCATGCTTGTAAATCGTACCCCCCTCCGATCCGTAATAAGTGTCGTGGT---
--TATATATGCTCGTAACTGATGGATGGTTGGTGCGGCATTTCAGGTCGAACACCGCGCATTACCTTATCCATGGATGCC
ACCATAAGCATCCTATGGACTCCCTCAGGCTCGTATTCCCTCCTGCTGGGGCAGCGATCATATGCGTGCCGGTACATA--
TCCCTGACTGAACCCATGGAATGGAAATGCTGAACATACATTTGC-AAACTGCCTCCATGAAACATAACC--------CA
AAGTGGTTTTGTTTTTGTTTCT---TATTTTTCAGTTCTGGAATGTTGTGGCATTCTTCGCAAGTCCATCCACGACTCCT
GCGCTGTTCGCCGGCGGCCTGCTGGGGTACGTGATGTATGACTGCACGCACTACTACCTGCACCATGGACAGCCGTCCAA
AGATCCAGCGAAGCATCTCAAGGTGACTAACTAGCATGATTCCACTTGAAGCCACCGATA--GTCTACCAGTAGCTGTTG
CTCATTCCTCACAAACTTGACTCGTGATGCAGCGGTATCACCTCAGCCACCATTTCAGAATCCAGGACAAGGGCTTCGGC
ATCACCTCGTCGCTCTGGGACGCCGTTTTCGGGACCTTGCCTTCGTCCAAGATCGCCGCGAAGCTCAGCTGA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr5D_1_TraesCS5D01G424200
ATCCTGACCCCGTCGTCCCGTGGTATCATCCGTAGTCGTCAAACCGTGCATCCTCGTGGCTGAGCTGATGCTTTGACTGG
CCACAGCAGAGCACATCACGCAGGCAAAGCCCGTCGCCGAGCTGGCAGGCGGGTGGCCCCACCCACGCCCACCCCGACCC
CCTATATCAGAGAGCGAGCGAGCGAG-----AGGGCATAGCTAGCGGATCGCCCGACCCGACTGTTGCAGATCGCCCCCG
AGAAACCCA-CAAATTTGCAGAACCTACACTGGGTCACGGGCCCCACCCCCGCGGCCCCACCCGGCAGCGAGGAGGGCAA
GGGC-AAGGCGGAGGCAGTTTGCAGGAACCCCCCCGTCCTATTCCGCCTCGCCTCGCCTCCTCCTTCCTTCCTGCCGTTG
CTGCCTGCCTCATCGTCCTTCTCTCTCTCGTCGCCTCGGC----------------------------------------
------CATCCCATCTCCTCTCCTCTCTCACCGGCGGGGAGGGTCTGCACGGCCGGCCGCCATTGGCGCGTCTTCCCGAG
GTA----CCCTCGCCCCGCCATCTCGAACCCTCGCCCTCGCTGGTCGCTGCCCCTTCGCCGTCTCGCGGTGGTTTCTGCC
CTTTTGTGTTATGTAATGTAATGGCTTCGGCA------------GCGGACGCGAATTGCCAGGGATGCATGGTTCGGGGC
GGCGATTCCTCCTCGGCGGAATCGGATCTACTAGGACTAGGAGAGATGGTGA-----TGGGC--TTTTCGTTCCTGCGTT
AATTATTTACTTACTTATTTTTCTTTATTATTACTGCGCGGTGTAATTCAGGTCCGAGTCGTGTGGACGATAAAAGGGCT
AGTGTT--AGTGCTGTAAGAAACGCCTGAGGCGGGCAGTGCTCTGCTCTGCCCAATCCCTGCGAGCAATCGCTGTGTCTG
TGTGAAGGATGCATGGTTATGATTTATGAAGCCTGACTGCGTACGT---------------------CGTGTCACGTGTG
ATCATGTGTGATTGACTGATTGCACGTACGT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TGCAGCTCTGATTGGGGAAGAGT----AGAAGATGGTCGTCAAGGAGTTTACCGTTGATCTCAACAAGCCTC
TTGTTTTCCAGGTA----CCAT----CTGCTCTCTCAATATTTGCTTCTTCAC----ATCAATTGTTGCAGCAACTCTTC
TCGGAAATTTTAGG-------TGTGCACATTTCCCATTCCTTTCCCACTTTAAGTTTGTCGTCATTTTGAGCTTGTGGCA
TACAGCCATACACTTCTGAGGTGCTG--------------------AAATGCTG--------------------------
--------------------------------------------------------------------------------
--------------------------AACTGTCAACATTTCAAGTGATGCTTGGTGGACTT--------------TGCTC
TACTCTTCTGAAATAATATGCTGTAGTGGTGAACTTGTGGTTTTACAAGCTTTAACTTATCCGGTGGAGGCTTCTATCCC
TACTCTTCTTCTATCAATATATGATATGCACGCTCGTGCATATTCTAGAAAAAAAAGTTTTAACTTACTGAGAATTGCTT
CTGCCTGACAGTTGAAGTAAACTACT----ACTTTTGACCGTGCTGTGTATTTTG------TGGCTCAAGGTTGGCCATC
TCGAGGAACATTACCAGGAATGGGTTCACCAGCCCATCGTGAGCAAAGAAGGTCCACGCTTTTTCGCAAATGATACCATG
GAGGTAACGCCAATGCGCTCCGGTGTATATATTAACGTCATTGGGGGATTTTGGAAACTGAACTGTCACCATATACGTAA
T--AAATTTCTTTGTGCAGTTCTTGACACGCACAAAGTGGTGGGCTGTGCCAGTCATATGGCTACCTGTCGTCTGCTGGT
TGTTTGCCAAGTCTGTTCGGATGGGTCACACCATTCAGGAAGTAATCTTGATGGCCCTATTTGGGGTGTTTGTTTGGACG
TTGATCGAGTACAGTTTGCACCGCTTCCTGTTCCACATCGAGACGAGAAGCTACTGGTAAGAAGAACTTATCAACCTTCA
CCTGGGAATG-TTTTATCGGGATTCTCCTCATGCTTGTAAATCGTACCCCCCTCCGATCCGTAATAAGTGTCGTGGT---
--TATATATGCTCGTAACTGATGGATGGTTGGTGCGGCATTTCAGGTCGAACACCGCGCATTACCTTATCCATGGATGCC
ACCATAAGCATCCTATGGACTCCCTCAGGCTCGTATTCCCTCCTGCTGGGGCAGCGATCATATGCGTGCCGGTACATA--
TCCCTGACTGAACCCATGGAATGGAAATGCTGAACATACATTTGC-AAACTGCCTCCATGAAACATAACC--------CA
AAGTGGTTTTGTTTTTGTTTCT---TATTTTTCAGTTCTGGAATGTTGTGGCATTCTTCGCAAGTCCATCCACGACTCCT
GCGCTGTTCGCCGGCGGCCTGCTGGGGTACGTGATGTATGACTGCACGCACTACTACCTGCACCATGGACAGCCGTCCAA
AGATCCAGCGAAGCATCTCAAGGTGACTAACTAGCATGATTCCACTTGAAGCCACCGATA--GTCTACCAGTAGCTGTTG
CTCATTCCTCACAAACTTGACTCGTGATGCAGCGGTATCACCTCAGCCACCATTTCAGAATCCAGGACAAGGGCTTCGGC
ATCACCTCGTCGCTCTGGGACGCCGTTTTCGGGACCTTGCCTTCGTCCAAGATCGCCGCGAAGCTCAGCTGACAC--GCA
TGAACATGCTCTTTGCACGAGGAATTTT-AGTAGAGAGTTTGTA-GGCTTAGGTTAGGGGCAAAGCTCATCTTGCATTTC
TGCAATGGGTTCGCATATCTGCACGGTTGGAG--------------------ATGTCTGTC-CTGATGTGAAGACGTTTT
GGCTGCCTCGACTTTTCATCCCCAGCAATAGGCTATTCATTTCGTTCTAGTCGATGTT---AGGATAAATAGTCATATTC
CTTGGTTGAATTGTGATATCTTCTGTCATCTTTCTCTTTGAGTTTTAGTTGTCGGCTGTTCAGAGAATGGTGCGAGATGC
TCTTTTCTGGGTCCTCGTCATGAGTTGCCTTCTACCCCCTATGTTCCTAAATATAAGTCTTTCTAGACATTTCAAATGGA
CAACAATATACAGATGTATGTAGGCATATTTTAGAGTGTAGGTTCACTCATTTTGCTCCGTATGTAGTCACTTGTTAGAA
TCTCTAGAAAGACTTATATTTGGGAACAGAGGGAGTATCAGCATAAAGGGATATCTGAAGGAT----ATTCTCTGGATAG
CCTTTGCACCTTTAGAAGAGTGTGTACAAACTTGAACGTGTGTGATAGAAATAAATGAACTTGTACATATGAGTGAAGAA
ACAAAGAAAATTTTCCGGTGGAACTAATGTTAAGCCATGAGAACGTGGCAAATCTGAAGCCATTCCTGCGGTCGGAGATC
GCACATGGGTCATAGCAATACCTGGCAGAGATACACCCATATACTCAGGCACTCAGCCATCTCATTCGCAACAATTCCGT
GGTTCATAGTACAGATCTACAG------------CCAGTTGGGGCATCAGAAGCACATGAGACT-ATTGGTTCAGATACC
CTCCATTTCAGAATCAAAAGGTGCTAGATGCCATATGAATTAAGTTTTGACAGTAACTAGTGGATTTGATCTCCGAAAGA
AACAGCCTGTTCAAAACAAAATGTAGACTGAGCTAAATTGCGACTAGAAACAAGTCAACAACAATGCATTGCCAGAC
>chr5A_58
---------------------------------------------------------GGCTGAGCCGATGCTTTGACTGG
CCACAGCAGAGCAGAGCAG--------AGCCCGTCGCCGAGCTGGCAGGCGGGTGGCCCCACCCCCG----------CCC
CCTATTTGAGAGGGCGAGCGAGCGAGGCGAGAGGGCATAGC----GGATCGCCCGGCCCGACTGTTGCAGATCGCCCCCG
AGAAACCCACCAAATTCGCAGAACCTACACCGGGTCACTCA---------CGCGGCCCCACCCGGCAGCGAGGGGGGCAA
GGGCAAAGGCGGAGGCAGTTTGCAGGAAAGCCCCCGTACTATTCTGCCTCGCCTCGCGCT-TCCTTCCTTGCTGCCGTTG
CTGCCTGCCTCCTCGTCCTCCTCCCTCTCGTCGCCTCGCCTCGGCCCAGGGACGGCGACGCCAACCGGCGAGCGGGCGGG
CGGGCTCATCCCATCTCCTCTCCTCTCTTGCCGGCGGGGAGGGTCTGCGCGGCCGGCCGCCATTGCCGCGTCTTCCCGAG
GTACGTGCCCTCGCCCCGCCATCCCGAACCCTCGCCCTCGCGGTT------------------TCGCGGTGGTTTCTGCC
CTTTTCATATGCCTTCGCTG------------GCGTCTGGTTCCGTGGATGCGAATTGCCAGGGATGCATGGCTCGGGGC
GGCGATTCCTCCTCGCCGGAATCGGATCTA---------GGAGAGATGCATGACGATGGTTTTTTTTTTGTTCCTGCGTT
AT--------TTTTGTTCCT----------TTATTTCGCGGTGTAATTCAGGTCCGAGCCGTGTGGACGATGAAGGGTGG
TATTAGCCAGTGCTGTAAGAAACGCCTTGGGTGGGCAGTGCTCTGCCG-----AATCCGTGGGAGCAATCGCTGTGTGAA
GG----------ATGGTTATGATTTATGAAGCCTGCCTGCCTCTGTCTGCGTTCTGTCACGAACTCACGTGTGAGGTGTG
ATCATGTGGATCATTGCTCGGCCCAACGGACGTTGCCGTCCTTTTCGGCCGGATAGTTAGGGGGACAAAAGGTGGTGATT
ATGGCGTCCTCTTCAGTCCTCACACCAATGCCCATTACTAGTGTAATGTACGTGCCCATTGCCATCCAGAATT----GAG
GTCGGCCATCACGC--------------------CTTGTGTTTGGGGTTTGGGCTGTATGCCTTTCTAGTTTCTAGCTTT
TCGATCCCGC----ATTCCCTTCGTGATTGTTATTGTTGCGTGCATGATGAAT----GATGTGTGCTGCTATTTTAATTT
TG---CAGTGTAGCTCTGATTGGGGAAGAGT----GGAAGATGGTTGTCAAGGAGTTCACCGTTGATCTCAACCAGCCTC
TTGTTTTCCAGGTA----CCAT----CTGCTCTCCCAATATATGCTTCTTCAGATCAATCAATTGTTGCAGCAACTCTTC
TCGGAAATTTTAGGCTCGGCGTGTGCACATCTCCCATTCCTTTTCTACTTTAAATTTCTCATCATTTTGGAGCTTGCTTG
TGG---CATACACTTCTGAGGTGCTCATCACCAGCTCAGTTGCTGAAAATGTTG--------------------------
--------------------------------------------------------------------------------
--------------------------AATTGTGAATATTTTAACTTATTTAAGTGAGAGACTTGGCATATATGCATGCTC
TGCTCTTCTGAAATAATATGCTGTAGTGGTGAGCTTGTAGTTTTACAATTTTTAACTCGCC-------------------
---------------------------------------------------------------------TAGAACTGGTT
CTGCCTGACAGCTGAAGCAAACTACTT-------TTGACCGTCTTCTTTATCTTG------TGGATGAAGGTTGGCCATC
TCGAGGAACATTACCAGGAATGGGTTCACCAGCCTATCGTCAGCAAAGAAGGTCCGCGCTTTTTCGCAAATGATACCATG
GAGGTAACGCCAATGCGCTCCGGTT----TATTAACGTCATTG-GGGATTTTGGAAACTGAATTGTCACCATATACGTAA
TGAAAATTTCTTTCTGCAGTTCTTGACACGCACAAAGTGGTGGGCTGTGCCAGTCATATGGCTACCTGTCGTCTGCTGGC
TGTTTGCCAAGTCGATTCGGATGGGTCACACCATTCAGGAAGTAATCCTGATGGCCCTATTTGGAGTGTTTGTTTGGACG
TTCATTGAGTACGCTTTGCACCGCTTCCTTTTCCACATCGAGACGAAAAGCTATTGGTAAGAAGAACTTATCAACCTTGA
CCTGGGAATG-TTTTATCGGGATTCTCCTCATGCTTGTAAATTTTA-CTCCCTCCGGTCCTTAATAAGTGTCGTGGT---
------TATGCTCGTAACTGATGGATGGTTGGTGCGGCGTTTCAGGTCGAACACCGCACACTACCTTATCCATGGATGCC
ACCATAAGCATCCTATGGACTCACTCAGGCTCGTATTCCCTCCTGCTGGGGCAGCGATCATATGTGTGCCGGTATATA--
TCCCTGACTGAACCCATGAAATGGAGATGCTGAACAT----TTGG-AAACTGCTTCCACGAAACATAACCCATTTAATCA
AAGCGGTTTTGTTTTTGTTTCT---CATTTTTCAGTTCTGGAATGTTGTGGCATTCTTCGCCAGTCCATCTACCACTCCT
GCGCTGTTCGCCGGTGGCCTGCTGGGGTACGTGATGTATGACTGCACGCACTACTACCTGCACCATGGACAGCCATCCAA
AGATCCAGCGAAGCATCTCAAGGTGACTAACTAACATGATTCCACTTGAAGCCACCGATA--ATCTACCAGTAGCTGTTA
CTCATTCCTCACAAACTTGACTCGTGATGCAGCGGTACCACCTCAGCCACCATTTCAGAATCCAGGACAAGGGCTTCGGC
ATCACCTCGTCGCTCTGGGACGCCGTTTTTGGGACGCTGCCTTCATCCAATATCGTTGCGAAGCTCAGCTGACAC--GCA
CAAACATGTTCTTTGCATGAGGAATTTC-AGTAGAGTC--TGTA-GACTTAGGTTAGGGACAAAGCTCATCTTGCCTTTC
TGCCATGGGTTCGCATGTCT-------------TCTCCAGTGGTGTGTGCTGATGTCTGTT-ACGACGTGAAGACGTTT-
GGTTGCCTCAACTTTTAATCGACAGAAATAGGGTATTCGTGTCGTGGTAGTCGATGTT---GGGATAAATAGTCACATTC
CTCGGTTCAGTTGTGATATCTTGTGTCATCTTTCTCTTTGGGTTTTAGTTGTCGGCTGTTCAGAGAATGGTGCGAGATGC
TCTTTTCTGGGTCCTCATCATGAGTTGCCTTCTA----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TCAGCATAAAGGGATATTTGAAGGATGGATATTCTCTGGATAG
TCTTTGTACCTTTAGAAGAGTGTGTACAAACTTGAACGTGTGTGATGGAAATAAATGAACTTA-ACATATGAGTGAAGAA
ACAATGCAACTTTTCCTGTGGAAATAATGTTACGCCATGAGAACATGGCAAATCTGATGCCATTCCTGCAGTCGCAGATC
GCACATGGGTCATAGTAATACCTGGCAGAGATGCACCCATATACTCATGCACTCAGCCATCTCATTCGCAACAATTCTGT
GGTTCATGGTACAGATCTACTACAGGTCTACAGCCCAGTTGGGGCATCAGAAGCACATGACACTCATTGGTTCAGATACC
CTTCATTTCAGAATCAAAAGGTGCTAGATGCCATATGCATTAAGTTTCGACAGCAACTAGTGGATTTGATCTCTGAAAAA
GACAGCATGCTCAAAACAAAATGTAGACCGAGCTAAATTGCGACTAGAAACAAGTGAACAACAGTACATTGCCAGAC
>chr5B_431
GGCTCAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CCCATCTACTCCCATCTCTCACCGGCGGGGAGGGTCTGCACGGCCGGCCGCCATTGCCGCGTCTCCCCGAG
GTACGTACCCTCGCCCCGCCATCTCGAACCCTCGCCCTCGCTGCCCTTTCGA---TCGCCGTCTCGCGGCCC--------
--------TTTTGTTATGTAATGGCTTGGGCAGCGCTTGGTTCCGCGGACGCGAATGGCCAGGGATGCGTGGCTCGGGGC
GACGATTCCTCCTCGCCGGAATCGGATCTACTAGGA---GGAGAGATGATGTTGGGCTGGGC--TTTTCGTTCCTGGGTT
AT--------TTACTTGTTTTTCTTTATTATTATTGCGCGGTGTAAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GTACCTGCCCATTGCCATCCAGAATTCCTGGAG
ATCGGCCATCACGCCTTATTACTTTAGCGTAAGGCTTGTGTTTGGGGTTTGGGCTGTATGCCTC-------TCTAGCTTT
TGGATCCCGTACGTATTCCCTTCTTGATTGTTATTGTTGCAGGCATGATGAATTTTTGATGTGTACTGTTATTTTAATTT
TATTACAGTGTGGCACTGATTGGGGAAGAGTACGTAGAAGATGGTTGTCAAGGAGTTCACCGTTGATCTCAACAAGCCTC
TCGTTTTACAGGTACCATCCAT----CTGCTCTCTCAATATATGCTTCTTCACATCAATCAATTGTTGCAGCAACTCTTC
TCCGAGATTTTAGGC-------------ATTTCCCATTCCTTTTCTACTTTAAATTTGTCAACATTTTGGAGCTTGCTTG
TGG---CATGCACTTCTGAGGTGCTG--------------------AAATGCTG--------------------------
--------------------------------------------------------------------------------
--------------------------AATTGACAAAATTTTAAGTGATGCTTGGTGG---------------GCATGCTC
TGCTCTTCTGAAATAATATGCTGTAGTGGTGAACTTGTGGTTTTACAAGTTTTAACTTATC-------------------
---------------------------------------------------------------------GAGAATTGGTT
CTGCCTCACAGTTGAAGCCAACTAATT-------TTGACCCTGTTCTGTATTCTATTTTTATGGGTGAAGGTTGGCCATC
TCGAGGAACATTACCAGGAGTGGGTTCACCAGCCCGTCGTGAGCAAAGAAGGTCCACGCTTTTTCGCAAATGATACCATG
GAGGTAACGCCAATGCGCTCCGGCGTA----TTAACGTCATTGGGGCATTTTGGAAACTGAACTGTCACCATATACGTTA
TGAAAATTTCTTTGTGCAGTTCTTGACACGCACAAAATGGTGGGCTGTGCCGGTCATATGGCTACCTGTCGTCTGCTGGC
TGTTCGCCAAGTCGGTTCGGATGGGCCACACCATTCAGGAAGTAATCCTGATGGCCCTATTTGGAGTGTTTGTGTGGACG
TTGATCGAGTACAGCTTACACCGCTTCCTCTTCCACATCGAGACGAGAAGCTATTGGTAACAC---CTCATCAACCTTCA
CCTGGGAATGTTTTTATCCGGATTCTCCTCATGCTTGTAAATTGTA-CCCCCTCCGATCCGTAATAAGTGTCGTCGTTGT
TATATATATGCTCGTAACTGATGGATGGTTGATGCGGCGTTTCAGGTCGAACACCGCACATTACCTTATCCATGGATGCC
ACCATAAGCATCCCATGGACTCGCTCAGGCTCGTGTTCCCTCCTGCCGGGGCAGCGATCATATGCGTGCCGGTACATATA
TCCCTGACTGAACCCATGAGATGGAAATGCTGAACAT----TTGCAAAACTGCTTCCATGAAACATAACCCGTTTAATCA
AAGCGGTTTTGTTTTCGTTTCTTCCTATTTTTCAGTTCTGGAATGTTGTGGCATTCTTCGCGAGCCCATCCACGACTCCT
GCGCTCTTCGCCGGTGGCCTGCTCGGGTACGTGATGTATGACTGCACCCACTACTACCTGCACCATGGACAGCCGTCCAG
AGATCCAGCGAAGCATCTCAAGGTGACTAACTAGCATGATTCCACTTGAAGCCACCGATATAATCTACCAGTAGATGTCA
CTCATTCCTCGCAAACTTGACTCGTGATGCAGCGGTACCACCTCGGCCACCATTTCAGAATCCAGGACAAGGGCTTCGGC
ATCACCTCGTCGCTCTGGGACGCCGTTTTCGGGACGCTGCCTTCGTCCAAGATCGCCGCGAAGCTCAGCTGACATGTGCA
TGAACATGTTCTTTGCATGAGGAATTTTCAGTAGAGTC--TGTAGGGCTTAGGTTAGGGACAAGGCTCATCTTGCCTTTC
TGCCATGGGTTCGCATGTCTGCACGGTTGGAGTTCTCCAGTGGTGTGTGCTGATGTCTGGCTCTGATGTGAAGACGTTT-
GGTTGCCTCAACTTTTCATCCACAGAAATAGGTTATTCGTTTCGTGGTATTCGACGCTAGGAGGATAAATAGTCATATTC
CTTGGTTCAATTGCGATATCTTCTGTCATTTTTCTCTTTGGGTTTTAGTTGTCGGCTGTTGAGAGAATGGTGCGAGATGC
TTCTTTCTGGGTCCCAGTCATGAGTTGGCTT-------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3D_976
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------AGCTCTGATTGGGGAAAAGT----GGAAGATGGTTATCCAGGAGTTCGCCGTCGATCTCAACAAGCCAC
TTGTTTTCCAGGTA----CCATGCATCTGCTCTCTCA----ATGCTTCTTCAG----ATCAATTGTTGCAGCAACTCTTC
TCGGAAATTTTAGGC-------------ATTTCCCATTCCTTTTCTACTTTAAATTTCTCATCATTTTGGAGCTTGCTTG
TGG---CATACACTTCCGAGGTGCTGATCACCAGCTCAATTGCTGAAATGCTCAATTGTTCTCAGAAATTTTGGCCTTGC
CGTGTACGTTTTCAGTTCCTTTTTCTCTTCAATTTTTCTGTCGCTTCCGAGCTTGTGCCTACAATTCTGAGGTGCTGATC
ACCAGCTCAATTGCTCAACACAATGAAATTATGAATATTATAAGCGATGCTTGGTGA---------------GCATGCTT
TGCTCCCCTGAAAGAATGTGCAGTATTGGTCAACCTATGGG---------------TTATC-------------------
---------------------------------------------------------------------TAGAATTGGTT
CTGCCTGACAGTTGAAGTAAACTACTTACTACTTTTGGCCGTGTTCTTTAATTTG------TGGATGAAGGTTGGCCACC
TTGAGGAACATTACCAGGAATGGGTTCACCAGCCTGTCGTGAGCAAAGAAGGTCCACACTTTTTCGCAAATGATACCATG
GAGGTAACGCCAATGCGCTCTGGTGTATGTATTAACGTGATCA-GGGATTTTGGAAACTGAACTGTCACCATATACGTAA
TGAAAATTTCGTTGTGCAGTTCTTGACACGCACAAAGTGGTGGGCTGTGCCAGTCATATGGCTACCTGCAGTCTGCTGGC
TGTTTGCCAAGTCGATACGGATGGGTCACACCATTCAGGAAGTAATCCTGATGGCCCTATTTGGAGTGTTTGTGTGGACG
TTGATCGAGTACAGTTTGCACCGCTTCCTGTTCCACATCGAGAGGAAAAGCTATTGGTAAGAG---CTTATCAACCTTGA
CCTGGCAATGTTTTTATCGGGATTCTCCTCATGCTTGTAAATTGCACCACC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------
-------------S-S--SSSSSSSSS-------------------------------------S--SSSSSSSSSS---
-----S-S----S----------------------------SSSS----------S------------------------
----------------S-------------S-------SSSSSSSSSSSS-----------------------S------
----------------------------SS-------S------S------------SSSS---------S---------
-----------S-------S---S--------------S-----------------------------------------
-----------------------------------------------------------------S--------------
-------------------------------------------S--SS-SSSSSS-------------------------
-----SSS--S---S------------S--------------------------------------------S-------
---------------S--------------------SSS---------S--S----------------------------
-SSSSSSSSS------S----------------S------------------------S------------S--S--SSS
SS-SSS---------------------SS--S--------------SSSSSSS-----S--S---------------SSS
S-SSSSSSSSSS-----------------------S----S-SS----------------------------S-S-----
--------SSSSSSSSSSSSSS-SSSSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S----------------------------------S-----------S----------------------
-----------------------------------------S--------------------------------------
-------------------------------------------S-S-------S------S--------SSSS-SSSSSS
-SSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------S----S-----------------SSS-------------------
-S-----------------------------------------------S-----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--
-------------------------------------------S-S------------------S-S-------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------------------------------------------------------------------------------S
-------------S---------------------------------S----------------S---------------
-----------------------------------------------------S--------------------------
------------------------------------------S-------------------------------------
--------------------------------------S------------------S----------------------
----------------------S---------------------------------------------------------
------------------S------------------SSSS------------S--------------------------
---S---------------------------------------------------------S------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------S----------------S
-------------------------------------S------------------------------------------
-----------------------------------SS-------------------------------------------
--------S--------S------------------SSSS-------------------S---------------S----
---S------------S--------------------------------------------------------------S
--S------S-----------S---S------S-----S------SS---------------------------------
-------S--------------------------------S---------------------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-------------------------
S-----S---------------------------------------S---------------SS----------------
----S-S--S------S------S--------S-----------S------------S-----------S----S-----
---------------S----------------S--------------S-----------------------------S--
-------S------------SS--------------------------------------S-------------------
--S----------------------------------S---------S-----S-------------------S----S-
S-----S--S------------------S--------------------------S-------S-S-----------
>forward_31
-----------GTCGTCCCGTGGTATCATCC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2065
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CTCAAGGTTGGCCATC
TCGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_646
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CGGTGGTTTCTGCC
CTTTTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2663
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CCTCAGGCTCGTATTCCCTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_964
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GCAATCGCTGTGTCTG
TGTG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_3360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GGCTGCCTCGACTTTTCAT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
