>input_sequence_47736
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-------------------------------------ATGGCCGCCGCGACGGCGACGGCAGCCTTCGTGGTCGTGCGCC
CACGCAGCCGAGACTCAGCTAGCCACGCCTCTTCTCTCTCAACCGCCGTCGCCGGCACCCGCACTACTCTTGTCCACCAC
CGCGGCCACGCTGCACGCCGGCGCCTCCCGCTCT------CTCGAGCCCGAGCTCTGCTGCCCCACGGCCTCCCCCTGGT
CCTGGTCTCCGACCACTGGGGCAACTGGACGGTCCTCCTGTCCGCGGCCGCGCTGGGCGTCTGGTCCGAGAAAAGCACCC
GCGCCGGCAAGGCGCTGAGCGGCGCGCTGGTGAGCGTGCTGCTCGGCCTCGCCGCCACCACGGCCGGGCTCGTCGCCGCC
GACGCCCCCGCCTACCGCGTGGTGCTGGAGTACCTGCTCCCGCTGGCCGTGCCGCTGCTCCTCTTCCGCGCCGACCTCCG
CCGCGTTGTCCGCTCCGCCGGCGCCCTCCTCCTCGCATTCCTCCTCGGATCTGGTACGCGCGCTTCATCGATCTACAGTT
CCACTACTCAGCTAGCTGACAATCCATGACCCATGACCCATCGATCTTTCTTGGAAATGGCAGTGGCGACGACGGTGGGC
ACGGTGGTGGCGTTCGCGCTGGTGCCGATGCGGTCGCTGGGGCCGGACAACTGGAAGATCGCGGCGGCCCTCATGAGCCG
GCACATCGGAGGAGCCGTCAACTACGTGGCCGTCGCGGAGGCCCTGCAGGTGACCCCGTCGGTGCTGGCCGC--------
----CGACAACGTCATCTGCGCGCTCTACTTCACCACGCTATTCGCGCTGGCCGCCAAGATCCCCGCTGAAGAGACGGTG
CATTCCAAAGAGGGAGTCAACGCCAGCGGCGAGCCCACTCCGGCTGCCGGCGGCGGCGACAGGCTGCCGGTCCTGGAGAG
CGCGACGGCGCTGGCCGTGTCGTTCGCGATATGCAGAGCAGGCAAGCACATGACGGCCCTGCTGGGCGTACAGGGCGGCA
G-------CCTCCCCTGCATCACAGCAATCGCGGTGGCGCTGGCGACACTGTTCCCCTCGCACGTCGGCAAGCTCGCCCC
CGCCGGCGAGGCCATGGCCGTGATCCTGATGCAGGTG----------------GGGCCAACGGGAGCATCCGCGACGTCA
TCTGGAAAAGAATTCTATGAGACGTGGCATTCATAAATCACAAAGTATCCTTCGTCCCCCACTTAAAATCAATGAAGAAG
AGATTAAATGCTTTGTGATTTGTGAATGCCACATGTCATCCATTGGGACGGGTCTCACCTGCTAACCGTGAGATCTGGTT
TCATATAATTTTTTTCCACATCATTCACACGGCGCCCGGCATCTTCGCTTTCTCGTTGGTGCAGATCGCCGTGCACCTGC
TGGTGATCTTGGGCGCTGGGAAGCTGCTGGGGTTGGAGGAGAAGCTGCTGCTCATCGCGTCCAG----------------
----CCACCGCCTGCGGCATGGCCACCAGCAAGGGCTGGAGCTCCCTGGTCGTCCCCGGGATCCTCGCCGGCATATTTGG
CATCGCCATCGCCACCTTCCTCGGCGTCGGTTTCGGCATGTTTGTCCTCAAGCACATGTGACGCAATGCACCTGCACTTG
A-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G285800
CCAATCACCGTCGTCGACAGCAGCAAGGCAGAACACCGAACGAGAGTTATCGAACGAAGGCGCTGAAACCTCAGAGAAGG
CCAAAAGGATGCAACACCATGCCCCCGGTCAAGGATAGGAATTGCCAACGCTAAAGGCCTAACGCCGGCATTGAGGCAAG
GACCCCAAT-CCCTCGCACCTGCAGCTGGAACCCTCCACACCTGGACCCGATTAGGATGCTGAAGATGATATTAGGCCAC
ACATGCCGCCATTGAACCACACCCAGAGCCATCT-------------CGGATGACACTTTCAGGAAGGAACATACCACCA
AAATGCCGTTGTCGCCACCCAAATGTTGTTGTCTTCGCCGAACTCAATGCGAAGATAGAGGAGAAGGAGGCCAGAGCAA-
----CTACCGCCCATGCTGCCGGAGCCGAGCACTGAGATTGTTGACATCTCCGATGAGGAGTAGATAGGTGATCGACGTA
GTACGTAGGTTTATTTCATTTGCGTGTCTTTGTATGGATTTAAGAATGTAGTATAAGATGTCCGGAAGCAACTCGTGAAA
TTTGAAACGTGTCCAGTCACTACCAAAGGACGCGTCCGTGTCCACGGACATTTGAGGGCTGTAGATGCTCTAACGAGGAA
AAGAATTCTATAAAACTAGGTCTCACACGAGACCCATCCTGATAGAAATGCTTTGTGATTTGTGAATACCACGTGTCATC
CATCAAGACGGGTCTCACCTGCTAACCGTAAGACCTGATCTTATATAATTTTCTTCCCTCTAAGGAGCACACCGGCTGTG
ATATGACGAGCAGCCCGGGCGCATCACCACAGTGACGGTTGGATGGGGCGACGGAGAGATCCGAGACCATTGTTGCTTTA
AGATTCGTATTGCCAGGTGTCCCATGCGGGAGAG----------------------------------------------
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----------GGTCTCACGATTGGTTGTGCACGATCCGGTAGTACAGGA--ATTTTTTTCCCAACGACAGGCATCCACTT
CATTTGGCTTTCGACGGGAAGACGCGGTTGACCATCGATGGCCGCCGCGACGGCGACGGCAGCCTTCGTGGTCGTGCGCC
CACGCAGCCGAGACTCAGCTAGCCACGCCTCTTCTCTCTCAACCGCCGTCGCCGGCACCCGCACTACTCTTGTCCACCAC
CGCGGCCACGCTGCACGCCGGCGCCTCCCGCTCT------CTCGAGCCCGAGCTCTGCTGCCCCACGGCCTCCCCCTGGT
CCTGGTCTCCGACCACTGGGGCAACTGGACGGTCCTCCTGTCCGCGGCCGCGCTGGGCGTCTGGTCCGAGAAAAGCACCC
GCGCCGGCAAGGCGCTGAGCGGCGCGCTGGTGAGCGTGCTGCTCGGCCTCGCCGCCACCACGGCCGGGCTCGTCGCCGCC
GACGCCCCCGCCTACCGCGTGGTGCTGGAGTACCTGCTCCCGCTGGCCGTGCCGCTGCTCCTCTTCCGCGCCGACCTCCG
CCGCGTTGTCCGCTCCGCCGGCGCCCTCCTCCTCGCATTCCTCCTCGGATCTGGTACGCGCGCTTCATCGATCTACAGTT
CCACTACTCAGCTAGCTGACAATCCATGACCCATGACCCATCGATCTTTCTTGGAAATGGCAGTGGCGACGACGGTGGGC
ACGGTGGTGGCGTTCGCGCTGGTGCCGATGCGGTCGCTGGGGCCGGACAACTGGAAGATCGCGGCGGCCCTCATGAGCCG
GCACATCGGAGGAGCCGTCAACTACGTGGCCGTCGCGGAGGCCCTGCAGGTGACCCCGTCGGTGCTGGCCGC--------
----CGACAACGTCATCTGCGCGCTCTACTTCACCACGCTATTCGCGCTGGCCGCCAAGATCCCCGCTGAAGAGACGGTG
CATTCCAAAGAGGGAGTCAACGCCAGCGGCGAGCCCACTCCGGCTGCCGGCGGCGGCGACAGGCTGCCGGTCCTGGAGAG
CGCGACGGCGCTGGCCGTGTCGTTCGCGATATGCAGAGCAGGCAAGCACATGACGGCCCTGCTGGGCGTACAGGGCGGCA
G-------CCTCCCCTGCATCACAGCAATCGCGGTGGCGCTGGCGACACTGTTCCCCTCGCACGTCGGCAAGCTCGCCCC
CGCCGGCGAGGCCATGGCCGTGATCCTGATGCAGGTG----------------GGGCCAACGGGAGCATCCGCGACGTCA
TCTGGAAAAGAATTCTATGAGACGTGGCATTCATAAATCACAAAGTATCCTTCGTCCCCCACTTAAAATCAATGAAGAAG
AGATTAAATGCTTTGTGATTTGTGAATGCCACATGTCATCCATTGGGACGGGTCTCACCTGCTAACCGTGAGATCTGGTT
TCATATAATTTTTTTCCACATCATTCACACGGCGCCCGGCATCTTCGCTTTCTCGTTGGTGCAGATCGCCGTGCACCTGC
TGGTGATCTTGGGCGCTGGGAAGCTGCTGGGGTTGGAGGAGAAGCTGCTGCTCATCGCGTCCAG----------------
----CCACCGCCTGCGGCATGGCCACCAGCAAGGGCTGGAGCTCCCTGGTCGTCCCCGGGATCCTCGCCGGCATATTTGG
CATCGCCATCGCCACCTTCCTCGGCGTCGGTTTCGGCATGTTTGTCCTCAAGCACATGTGACGCAATGCACCTGCACTTG
ATAGAAAGAAGAGAGAATCAACCTGTAGTAGAGCCTGATTTCATGGGCCTTGTTCAGTCGGGTTATCACTGAAACTGAAG
TGAGTTCCTGTTCTGATGGTGGGAATGGTTCCTGTTCTGATGGTGGGAATGGTTTCAACTGGTAAAAAATAGGTTCAG--
---------------------ACAATGGTAGGATGCACTGCACTAATATATATGTAATGTATGTATGGTCATGGAATTGC
CAACTGAATCAATCATGTGCTATATGGGAAGCTTGTAAGTCGCTTTCTACAATATGTACTATGTGAATATCAACTTGTCT
TTTCATCTAAGTGTAGCTGCCAGCATTCGAGTAAGTCTTTTCATATCTCAGTGTTAGTCTCTTGTATATTTTTTTCAATA
AAGGATGGACTTTATTAACTTAAAATGAAGCATCAAGAGGATACAAATAC---AATAAACATATACCCGGCCTTTGCATA
GTTAGGATATG---AACCGACATCAACGCACGCACAC-AAAACACGCCGGTAAATAGCTAAGTCATATAAGACCAAAGCT
ATACGTAGACGAGAAAAAAA----AATAAAAAAAATGCCCTAAAGCGATCAGATCAACGATCAGCAAACTATAACAATGA
CCATAT----CTGCACCGACCGTCTCATGACACCACGCGGACGACGAGATTCTTCAACAGCAACGCCTTCAGGAAGTAAG
CGACACTCAAATGTCACCGTCACCGGATCCAGCAACCCAAAGCTAGAATCTAGGCTTTCACCCTAAAAAATCAGTCCGAG
CATTCCGAACAATGCCTTCAATAAGATAACGATGTAAAA-CATCGTCATTGCTAGGTATACCAAAATTGGGTCAGACCTA
GGCTTTCACTCCGGAGCTCGAAACGGGGTGCTCAAGTAGCACCACCATTGAAGTCATTCAGGTGTTGTCGCCACCACTTT
TTCACAATCCCAGCAGCTATCATCGCTGTACAATCATCCCTCTGTATCAAAACTCCACCCATAGTTTGCATCTCGCCACC
>chr5B_1
CCAATCACCGTCGTCGGCAGCAGCAAGGCAGAACACCGAATGAGAGTTATCGAACGAAGGCGCTGAAACCTTAGAGAAGG
CCAAAAGGATGCAACACCATGTCCCCGGTCAAGGATAGGAATCGCCAACGCTGAAGACCTGACGCCGACACTGAGGCGGG
GACCCAATTCCCCTCGCACCAACGGCTGGAACCCTCCGCACCTGGACAAGAGTAGGATGCTGATGATGATATTAGGCCAG
ACATGTCGTCACCGAACCACACCCAACTGCACCACTCGAGCCATCCCCGGATGACACTTTCAGGAAGGAACACACCACCA
AAATGCCGTTGTCACCACCCAAATACCGTTGTCTTTGTGGAACTCGACGCGGAGATAGAGGAGGAGGAGGCCAGAGCGGA
GCAGCTACCGCCCATGCTGCCGGAGCCGAGCATGGAGATCGTCAACATCTCCGGCGAGGAGTAGCTGGATGATCGACGTA
GTACGTAGGTTTATTTCATTTGCATGACTTTGTATGGATTTAAGAATCTAGTATAAGATGTCCGGATGCAACTCGTGAAA
TTTGAAACGTGCCCGGTCATTGTCCGAGGACGCGTCCGCGTCCGCGGATGTTTGAGGGCTGTAGATG-------------
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---------------------------------------------------------CTCTAACGAGCACACCGGCGGTG
ATATGGCGAGCAGCCCGGGCGCATCACCACAATGACGGTTGGATGGGGGCGATGGAGAGTCCGGAGGC--TGTTGCTTTA
AGATTCGTATTGCCAGGTGTCGCATGCGGGAGGAAGTCTCAGGATTGGTTGTGCACGACTCGGTTGTACATGATTTTTTT
CCCAACGACAGGCATCCACTTCACTTGGCTTTCGATGGGAAAACAGGGTTGACCATCGATGGCCACCGCAACGGCAATGG
CAGCCTTCGTGGTCGTGCCCCAACACAGCCGAGACTCAGCTAGCCACCCCTCTTTTCTCTCTACCGCCGGCGCCGGCATC
CGCACCACTCTTGTCCACCACCATGGCCACGCTGCACGCCAGCACCTCCCGCTCCCGCTCCCTCGAGCCCGAGCTCTGCT
ACCCCACGCCCCCCCTGGTTCCAGCGTCCGACCACTAGGGCAACTGGACGGTCCTCCTGACCGCGGCCGCTTTGGGCGCC
GGAAATCCTGAAATAAATCCAGGAATAAATGCGAGCATCAGGATTTGAAACCTGATGGGCTGGGGATATCACAGTCCCTC
TAACCATCCAACCACAGGTTGGTTCGCAATCTTAAAGGTAGTGACTGAAAGTTTGTGTTTCAATTACTAGTCCAACTTAA
CTTTAAATACACAATCAAAAAGCAAAAAGTATGATGTACGTTTTACAGGGAAAGAGGCTGATGCCATCGCTATGTTTTAC
AGGGAAGGTATTATTAACTGAGGAACCTCGTGTGGAGGCGGAATCAGATTCCTTAAACGTTATAAACTTTTGTGATGGCC
AATCTAGATGGTGGGATATTGCAACATCAATTTTCACGGAATGTATGGATGTTTCTTCTTTAATCGGGAAGGTTGCCTTC
AAGCTTTATTTTCGTTCTTCCAATCAAGCGGCGCATGTGCTAGCTAACTTTTTTTTTATCGTAATAAGACCTCTTTAAAC
TGGACAGACGAGCCCCCGGGTTGTCTGGTCTCTTTGCTTGTGGGCGGTGTAATGCCTACGTTAAATCAATAAAGCTAACC
ATGATGGCCTTCCTTTTAAAAAACTAAGAAATCCCTTGGGCACAGTAAAAATATACGTGGACATCGCAGTTACTCCTGCA
TGCGCTGCCGATGCAGCGAGTTCTGTATCGTTCCAATTTTATCGGATGTCGCCGAAGGGACGCCGGTGCAGCGAGTTGAG
GCGCGCAAGAAGATGGCCGTGGTCGGCGGGGACAAGCAGCTGGGGGAGGGGGTGCCATGAGCTGGGTCAGTGACGAACGT
GGCCGTTTCCAACGGGGAAGGAGCCGAGCTGGAGTGGAGCACCTAGGGTAAGGAGCACACCGGCGGTGATGTGGCGAGCA
GCCCGGGCGCGTCACCACAATGACAATGACGGTTGGATGGGGCGACTGTTGCTTTAAGATTCGTATTGCCATGTGTCGCA
TGCGGGAGAAGGTCTCGCGATTGGTTTTGCACAATCCGGTCGTACAGGATTATTTTTTTCCCAACGACTGGCATCCACTT
CACTTGGCTTTCGACGGGAAGACGGGGTTGACCATCGATGGCCACCGCGACGGCGACGGCAGCCTTCATGGTTGTGCTCC
CACACAGCCGAGACTCAGCTAGTCACCCCTCTTCTCTCTCTACCGCCGGTGCCGGCACCCGCACCACTCTTGTCCACCAC
TGCGGCCACGCTGCACGCCGGCGCCTCCCGCTCCGGCTCCCTCGAGCCCGAGCCCTGCTGCCCCACGGCCTCCCCCTTGT
CCCGGCCTCCGACCACTGGGGCAACTGGACGGTCCTCCTGTCCGCGGCCGCGCTGGGCGTCTGGTCCGAGAAAAGCACCC
GCGCCGGCAAGGCGCTGAGCGGCGCGCTGGTGAGCGTGCTGCTCGGCCTGGCCGCCACCACGGCCGGGCTCGTCGCCGCC
GACGCCCCCGCCTACCGCGTGGTGCTGGAGTATCTGCTCCCGCTGGCCGTGCCGCTGCTCCTCTTCCGCGCCGACCTCCG
CCGCGTTGTCCGCTCCGCCGGCGCCCTCCTCCTCGCGTTCCTCCTCGGATCTGGTACGCGCGCTTCATCTTCTGCAGTTC
CCACTACTCAGCTAGCTAACGATCCATGATCCATCGATCTT-----TTTCTTGGAAATGGCAGTGGCGACGACGGTGGGC
ACGGTGGTGGCGTTCGCGCTGGTGCCGATGCGGTCGCTGGGGCCGGACAACTGGAAGATCGCGGCGGCCCTCATGGGCCG
GCACATCGGAGGAGCCGTCAACTATGTGGCCGTCGCGGAGGCCCTGCAGGTGACCCCGTCGGTGCTGGCCGCAGGGCTGG
CCGCCGACAACGTCATCTGCGCGCTCTACTTCACCACGCTATTCGCCCTGGCCGCCAAGATCCCCGCCGAAGAGACGGTG
CACCCCAAAGGGGGAGTCAACGCCAGCGGCGAGCCCACTCCGGCTGCCGGCGGCGGCGACAGGCTGCCGGTCCTGGAGAG
CGCAACGGCGCTGGCCGTGTCGTTCGCGATATGCAGAGCAGGCAAGCACATGACGGCCCTGCTGGGCGTACAGGGCGGCA
GGCGGCAGCCTCCCCTGCATCACAGCAATCGTGGTGGCGCTGGTGACGCTGTTCCCCTCGCACGTCGGCAAGCTCGCCCC
CGCCGGCGAGGCCATGGCCGTGATCCTGATGCAGGTGTTCTTCGCCGTGGTGGGGGCCAGCGGGAGCATCCGCGATGTCA
TC------------------------------------------------------------------------------
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-------------------------CACACGGCGCCCGGCATCTTCGCTTTCTCGCTCGTGCAGATCGCCGTGCATCTGC
TGGTGATCTTGGGCGCTGGGAAGCTGCTGGGGTTGGAGGAGAAGCTGCTGCTCATCGCGTCCAACGCCAACGTCGGCGGG
CCGACCACCGCCTGCGGCATGGCCACCACCAAGGGCTGGAGCTCCCTGGTCGTCCCCGGGATCCTCGCCGGCATATTCGG
CATCGCCATCGCCACCTTCCTCGGCGTCGGTTTAGGCATGTTTGTCCTCAAGCGCATGTAAAGCAAAAG-----------
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-----------------------------------------------ATATATGTAATGTATGTATGGTCATGGAATTGC
CAACTGAATCAATCATTTGCTA----------------------------------------------------------
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>chr5D_853
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-----------------------------------------------------------------------GTTACTTTG
AGATTCGGATTGCCATGTGTCATCCGCTGGAGGT----------------------------------------------
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----------GGTCTCACGACGGGGGCGTACGACCAAGGTCTTATAGGATTTTTTTCTCCG-------AGGCATCCACTT
CACTTGGCTTTCGACGGGAAGACGGGGTTGACCATCGATGGCCACCGCGACGGCGACGGCAGCCTTCGTGGTCCTGCTCC
CACACAGCCGACACTCAGCTAGCCACCCCTCTTCTATCTCTACCGCCGGCGCCGGCACCCGCACCACTCTTGTCCACCAC
CGCGGCCACGCTGCACGCCGGCGCCTCCCGCTCCGGCTCCCTCGAGCCCGAGCCCTGCTGCCCCACGGCCTCCCTCTGGT
CCCGGCCTCCGACCACTGGGGCAACTGGACGGTCCTCCTGTCCGCGGCCGCGCTGGGCGTCTGGTCCGAGAAAAGCACCC
GCGCCGGCAAGGCGCTGAGCGGCGCGCTGGTGAGCGTGCTGCTCGGCCTGGCCGCCACCACGGCCGGGCTCGTCGCCGCC
GACGCCCCCGCCTACCGCGTGGTGCTGGAGTACCTGCTCCCGCTGGCCGTGCCGCTGCTCCTCTTCCGCGCCGACCTCCG
CCGCGTGGTCCGCTCCGCCGGCGCCCTCCTCCTCGCATTCCTCCTCGGATCTGGTACGCGCGCTTCATCGATCTGCAGTT
CCACTACTCAGCTAGCTAAAGA-------------------------TTCTTGGAAATGGCAGTGGCGACGACGGTGGGC
ACGGTGGTGGCGTTCGCGCTGGTGCCGATGCGGTCGCTGGGGCCGGACAACTGGAAGATCGCGGCGGCCCTCATGGGCCG
GCACATCGGAGGAGCCGTCAACTACGTGGCCGTCGCGGAGGCCCTGCAGGTGACCCCGTCGGTGCTGGCCGCAGGGCTGG
CCGCCGACAACGTCATCTGCGCGCTCTACTTCACCACGCTATTCGCGCTGGCCGCCAAGATCCCCGCTGAGGAGACGGCG
CACCCCAAAGGGGGAGTCAACGCCAACGGCGAGCCCACTCCGGCTGCCGGCGGCGGCGACAGGCTGCCGGTCCTGGAGAG
CGCAACGGCGCTGGCCGTGTCGCTCGCGATATGCAGAGCAGGCAGGCACATGACGGCCCTGCTGGGCGTACAGGGCGGCA
G-------CCTCCCCTGCATCACGGCAATCGTGGTGGCGCTGGCGACGCTGTTCCCCTTGCACGTCGGCAAGCTCGCCCC
CGCCGGCGAGGCCATGGCCGTGATCCTGATGCAGGTGTTCTTCGCCGTGGTGGGGGCCAGCGGGAGCATCCGCGACGTCA
TC------------------------------------------------------------------------------
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-------------------------CACACGGCGCCCGGCATCTTCGCGTTCTCGTTGGTGCAGATCGCCGTGCACCTGT
TGGTGATCTTGGGCGCTGGGAAGCTGCTGGGGTTGGAGGAGAAGCTGCTGCTCATCGCGTCCAACGCCAACGTCGGCGGG
CCGACCACCGCCTGCGGCATGGCCACCACCAAGGGCTGGAGCTCCCTGGTCGTCCCCGGGATCCTCGCCGGCATATTCGG
CATTGCAATCGCCACCTTCCTCGGCATCGGTTTCGGCATGTTTGTCCTCAAGCGCATGTGACGCAATGCGCTTGCACTTG
ATGGAAAGA--AGAGAATCAACCTGTAGTAGAGCCTGGTTTCATGGGCCTTGTTCAGTCGTGTTGTCACTGAGACTGAAG
TGAGTTCA------------------------TGTTCTGATGGTAGGAATGGTTTCAACTGGTAAAAAAATAGGTTCAGA
AACACTCTTCCAAGCCTACAAACAATGGTAGGATGCACTGCACTG-----TATGTAATGTATGTATGGTCATGGAATTGC
CAACTGAATCAATCATTTGCTATATGGGAAGTTTGTAAGTCGCTTTCTACAATATGTACTATGCGAATATCAACT-----
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>chr3B_2941
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-------------------------------------------------------------TTGTACTTTTTTTTCGATA
AAGGCTGGATTTTATTGACTCAAAGTGAAGCATCAAGAGGATACAAACA----AATGAGTACACACCCGGCCTCTGCATA
GTTAAGATGCACAAAGCCAACATCAACGCGCGCACAC-AAAACACGCCGGCAAATAGCGAAGTCATACTAGACCAAAGCT
ATGCGTAGGCGAGGAAAAAA----GAAAAAA-----GCCCCAAAGCGATCAGATC-ACGATCGGCAAACTATAACAATGA
CCATAT----CTGCACCGACAATCTCATGACACCACGCGGACGACGACGTTCTTCAACAGCAACGCCTTAAGGAAGGGAG
CGACACTCAAGTGTCACCGTCACCGGATCCAGCCATCCAAGACTAGAATCTAGGTTTTCACCCCGAAGAATCAGTCCGAG
CATTCCGAACAATGCCTTCAACAAGGTAACGATGTAAAAACATCGCCATTGTCAGGTATACCCAACACGGGCGAGACCAA
GGCTTTCACTCCGGAGCTCTAGACTGGGTGCTCAAGTAGCACCACCATCGAGGTCATTCATGTGTTGTTGCCACCACTTT
TCCACGATCCCAGTAGCTA-------------------------------------------------------------
>chr4B_2947
ATTTT---------------------------------------------------------------------------
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-------------------------------------------------------------------------TTTAATA
AAGGGTGGACTTTACTGACTCAAAATGAAGCATCAAGAGGATACAAACAT---AATGAGAACACACCCGGTCTCTGCATA
GCTAGGATGCACACGACCAACACCAACGCACGCACACAAAAGCACGCCGGCAAATAGCAAAGCCATATAAGACCAAAACT
GTGCGTAGGCGAGGAAAAAG----AAAAAAT-----GCCTCAAAGCGATCAGATCCGCGATCGGCAAACTATAACAATGA
CCATAT----CTGCACCGACAATCTAATGACACCACGCGGACGACGAGGTTCTTCAACAACAACGTCTTCAGGAAGGGAG
CGACACTCAAGTGTCGCCGTCACCGGATCCAGGCACCCAAGGCTAGAATCTAGGCTTT-ACCCTGAAGAATCAGTCTGAG
CATTCCGAACAATGTCTTCAACAAGGTAATGATGTAAAA-CATCGTCATTGCCAGGTATACCTAACTCGGGCCAGACCTA
GACTTTTACCCTGGAGCTCGAGACCGGGTGCTCAAGTAGCACCATCATCGAAGTCATTCATG-GTTGTCGCCACCACTTC
TCCACGATCACAGCAGTTACATGCGATGTGACCATCA-------------------------------------------
>chr7A_2948
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--------------------------------------------------------------------TTTTTTTCGATA
AAGGGTGGACTTTATTAACTCAAAATGAAGCATCAAGAGGATACAAACAC---AATGAACACACACCCGGCCTCTGCATA
GGTAGGATGCACACAGCCAACACCAACACACGCACACAAAAACACGCCGGTAAATAGTTAAGTCATATAAGACCAAAGCT
ATACGTAGGCGAGAAAAAATATTTAAAAAAA-----GCCCCAAAGCGATCAGATCAACGATCAGCAAACTATAACAATGA
CCATATATATCTGCATCGACCATCTCATGACACCACACGGACGACGAGATTCTTCAACAGCAACGCCTTCGGGAAGGGAG
CGACACTCAAATGTCACTGTCACCGGATCCAGCCACCCAAAGCTAGAATCTAGGCTTTCACCCTGAAGAATCAGTCCGAG
CATTCCGAATAATGCCTTCAACAAGGTAACGATGTAGAA-AATCGTCATTGCTAGGTATACCAAAATTGGGTCAAACCTA
GGCTTTCACTCCGGAGTTCGAGACCGGGTGCTCAAGTAGCACCACCATCGAAGTCATTCAGGTGTTGTCGCCACCACTTT
TTCACAATCCCAGCAGCTATCATCGCTGCACAACCACCCCTCTGCATCAAGACTCCATCCATAGTTTGCATCTCGCCACC
>chr7D_2948
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--------------------------------------------------------------------TTTTTTTCGATA
AAGGGTGGACTTTATTAACTCAAAATGGAGCATCAAGAGGATACAAACAC---AATGAGCACACACCCGGCCTCTGCATA
GCTAGGATGCACACAGCCAACACCAACGCACGCATGCAAAAACACGCCGGTAAATAGCTAAGTCATATAAGACCAAAGCT
ATACGTAGGCGAGAAAAAAA----TAATAAATAAATGCCCCAAAGTGATCAGATCAACGATCGGCAAACTATAACAATGA
CCATAT----CTGCACCGACCATCTCATGACAGCACGCGGACGACGAGATTCTTCAACAGCAACGCCTTCAGAAAGGGAG
CGACACTCAAATGTCACCATCACTGGATCCAGCCACCCAAAGCTAGAATCTAGGCTTTCACCCTGAAGAATCAGTCCGAG
CATTCCGAATAATGCCTTCAACAAGGTAACGATGTAAAA-CATCGCCATTGCTAGGTATACCAAAATTGGGTCAGACCTA
GGCTTTCACCCCGGAGCTCGAGACCGGGTGCTCAAGTAACACCATCATCGAAGTCATCCAGGTGTTGTCGCCACCACTTA
TCCATAATTCCAGCAACTATCATCGCCACACAACTATCCCTCTGCATCAAGACTCCATCCATAGTTTGCATCTCGCCA--
>chr1D_2948
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--------------------------------------------------------------------TTTTTTTCGATA
AAGGATGGATTTTATTGACTCAAAGTGAAGCATCAAAAGGATACAAACAAACAAATGAGTATACACCCGGCCTCTGCATA
GCTAAGATGCACACAGCCAACACCAACGCACGCACACAAAA-CACGCCGGCAAATAGCGAAGTCATACTAGACCAAAACT
ATGCGTAGGCGAGGAAAAAA----GAAAAA-----GGCCCCAAAGCGATCAGAT-CACGATCGGCAAACTATAACAATGA
CCATAT----CTGCACCGACAATCTCATTACACCACGCGGACGACGACGTTCTTCAACAGCAACGCGTTAAGGAAGGGAG
CGACACTCAAGTGTCACCGTCACCGGATCCAGCCATCCAAGACTAGAATCTAGGTTTTCACCCTGAAGAATCAGTCCGAG
CATTCCGAACAATGCCTTCAACAAGGTAACGATGTAAAAACATCGCCATTGTCAGGTATACCCAACACAGGCGAGACCAA
GGCTTTCACCCCGGAGCTCTGGACTGGGTGCTCAAGTAGCACCACCATCGAGGTCATTCATGTGTTGTCGCCACCACTTT
TCCACGATCCCAGTAGCTA-------------------------------------------------------------
>chr5D_2949
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---------------------------------------------------------------------TTTTTTCGATA
AAGCGTGGACTTTATTAACTCAGAATAGAGCACTAAGAGGATACAAACAC---AATGAGCACACACCCGGTCTCTGCATA
GCTAGAATGCACGCAGCCGACACCAACACACGCACACAAAAACACGCCGGTAAATAGCTAAGTCATATAAGACCAAAACT
ATACATAGGCGAGAAAAAAA----ATAAAAAG--ATGCCCCAAAGCGATAAGATCAACGATCGGCAAACTATAACAATAA
CCATAT----CTGCACCGACCATCTCATGACACCACGCGGACGACGAGATTTTTTAACAGCAACACCTTCAGGAAGGGAG
TGACACTCAAATGTCACCGTCACCGGATCCAGCCACCCAAAGCTAGAATCTAGGCTTTCACCCTGAAGAATCAGTCCGAG
CATTCCGAACAATGCCTTCAACAAGGTAACGATGTAAAA-CATCGCCATTGCTAGGTATACCAAAATTGGGTCAGACCTA
GGCTTTCACCCCGGAGCTCGAGACCGGGTGCTCAAGTAGCATCATCATCGAAGTCATTCAGGTGTTGTCGCCACCATTTT
TCCACAATCCTAGCAGCTATCATCGCCCCACAACCATCCCTCTGCATCAACACTCCATTCATAGTTTGCATCTCGCCACC
>chr2A_2949
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---------------------------------------------------------------------TTTTTTCGATG
AAGGGTGGATTTTATTAACTAAAAATGAAGCATCAAGAGGATACAAACAC---AATGAGCATACACCCAGCCTCTGCATA
GCTAGGATGCACACAGCCAACACCAACACACATACACAAAAATACGTCGGTAAATACCTAAGTCATATAAAAACAAAGCT
ATACATAGGCGAGACAAAAG----AAAAAAA---ATGCCCCAAAGCAATCGGATCCACGGTCGGCAAACTATAACGATGA
CCATAT----CTGCACCGACCATCTCATGACACTACGCGAACGACAAGATTCTTCAACCGCAACGCCTTCAGGAAGGGAG
CGACACTCAAATGTCACCGTCACCGGATCCAGCCAC--AAAGCTAGAATCTAGGCTTTCACTCTGAAGAATCAGTCCGAA
CATTCCGAACAATGCGTTCAACAAGGTAACGATGTAAAA-CATTGCCATTGCTAGGTATAGCAAACTCGGGTCAGACCTA
GACTTTCACCCTGGAGCTCGAGACCGGGTGCCCAAGTAGCACCATCATCGAAGTCATTCAGCTATTGTCGCCACCACTTT
TCCACGATCCCAGCAGCTATCACCGCCGCACAACCATCCCTCTGCATCAAGACGCCATCCATAGTTTGCATCTCGCCACC
>chr3A_2949
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---------------------------------------------------------------------TTTTTTCGATA
AAGGGTGGACTTTATTGACTCAAAATGAAGTATTAAGAGGATACAAACAC---AATGAGAACACACCCGGCATCTGCATA
GCTAGGATGCACACAACCAACAACAACGCACGCACACAAAAACAAGCCGGCAAATAGCAAAGTCATATAAGACCAAAACT
ATGCGTAGGCGAGGAAAAAG----AAAAAA-----TGCCTCAAAGCGACCAGATCCACGATCGGCAAACTATAACAACGA
CCATAT----CTACACCGACAATCTCATGACACCACGCAGACGACGAGATTCTTCAACAGCAACGCCTTCAGGAAGGGAG
CGACACTCAAGTGTCGCCGTCACCGGATCCAGGCACCCAAGGCTAGAATCTAGGCTTTCACCCTGAAGAATCAGTCCGAG
CATTCCGAACAATGCCTTCAACAAGGTAACAATGTAAAA-CATCGCCATTGCCAGGTATACCCAACTCGGGCCAGACCTA
GGCTTTCACCCTGGAGCTCGAGACCGGGTGCTCAAATAGCACCATCGTCGAAGTCATTCATG-GTTGTCACCACCACTTC
TCCACGATCCCAACGGCTACATGCGATGTGACCATC--------------------------------------------
>chr3A_2950
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----------------------------------------------------------------------TTTTTCGATA
AAGGGTGGACTTTATTGGCTCAAAATGAAGCATCAAGAGGATACAAACAC---AATGAGAATACACCTGGCCTCTGCATA
GCTAGGATGCACACAGCCAACACCAACGCACGCACACAAA--CACGCTTGAAAATAGCAAAGTCATATAAGACCAAAACT
ATGTGTAGGCGAGGAAAAAG------AAAAA---ATGCCTCAAAGTGATCAGATCCGCGATCGGCAAGCTATAACAATGA
CCATAT----CTGCACCGACAATCTCATGACACCACGCGGACGACGAGGTTCTTTAACAGCAATGCCTTCAGGAAGGGAG
CGACACTCAAGTGTCGCCGTCACCGGATCCAAGCACCCAAGGCTAGAATCTAGGTTTTCACCTTGAAGAATCAGTCCGAG
CATTCCGAACAATGCCTTCAACAAGGTAATGATGTAAAA-CATCGCCATTGCTAGGTATACCCAACTCGGGCCAGACCTA
GGCTTTCACCCCGGAGCTCGAGACCGGGTGCTCAAGTAGCACCATCATCGAAGTCATTCATG-GTTGTCACCACCACTTT
TCCACGATCCCAGCAGCTACAT----------------------------------------------------------
>SNPs
----------------S-----------------------S------------------------------S--------
---------------------S--------------------S---------S---S---S------S--S------SS-
-----S-S------------SS-S-------------S---------SS--S-----------S---------------S
-----S--S--SS------------SSSS--S-S--------------------------------------S-------
-------------S----------SSS--------S-SS------S-S---S-----------S-------------SS-
--------------------------------SS-----S--SS---------SS---------S-S-S-----------
-----------------------S--S--------------------S------------------S-------------
-----------S--S----S-SS-SS------------S----S----SS-----------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------S---
-----S-------------------------S----------------SSSSS-SSSSS----SSSS-SS----------
---------------------S----------SS----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------S-----S-------S---------------------------------------
--S---------------------S------------------S---------------------------------S--
---S----------------------S-------------S-------S---------------S---------------
---------------------------------S-------------------S--------------------------
--S--S--------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------S--S--------S----SSSS-S-SSSSS----------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SS------S---------------------------------------------------------------------
---S----------------------------------------------------------------------------
-------------------------------S---------------S--------------------------------
-----------------------------------------------------------S--------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
---------------------------------------------------------------S----------------
----------------------------S------------------------------------------------S--
-----------------------------------------------------S---------------S-S--------
--S------SS--------------------------S----------------------S---S-------S-------
-------SSSSSSSSSSSSSSSSSSSSSSSSS------------S------------------------SSS-S-SSS--
--------------------------------------------SSS---------------------------------
----------------S--------------S-------------------------------S-----------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS------------
--------------------S--------------------------S--------S------S---------S------
--------SSS---------------------------------------------------------------------
--------S-----------------S----S--------S---------------------------------------
---------------------S------------------------------------------------------SS--
---------------------------------S------------------------------S--S------------
---------------------S---S------------------------------------------------------
---------------------S--S-----------------------S-------------------------------
---------------------------------S----------S-----S------S----------------------
>forward_680
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--------------------TCTCACACGAGACCCATCCT----------------------------------------
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>reverse_3204
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---TCCAAAGAGGGAGTCAACGC---------------------------------------------------------
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>forward_739
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-------------------------------------------------------------------------------C
CATCAAGACGGGTCTCACC-------------------------------------------------------------
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>reverse_3647
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----------------------------------------------GACGGGTCTCACCTGCTAAC--------------
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>forward_2273
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-------------CTCACGATTGGTTGTGCACG-----------------------------------------------
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>reverse_4335
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--------------AGCTGCCAGCATTCGAGTAA----------------------------------------------
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--------------------------------------------------------------------------------
