>input_sequence_47729
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----------------------------------------ATGGTATGGTTGGTTTGAGCCTAGGGTTGCCAGAACAAAC
GTCAGCTCAATCATAAACTATTTGAACCCTCAAATATTTTCTTTTCTCTTCCTCACAATTTTTCTTTTCGGAAAAATGGG
AATCTGTTCAGTAAAATGCGTAATGGGCCAGTCCAGTGGCCGCATTACGTAATGGGCTGTTGCCTCCTAGCAGCCCAAAC
AGTGCTAGCCGGCCCCAATTCGCCCAACCGCAGCCCACCTCTACCCCCGCTAACCCTAGCGCCAGGGGGAGAGCGTCGGC
TCGATCCCCCACTCGCCCCCCCCCGCGACACACGCGCGCGCCCGCCGCCGCCAGGGCACCTTGCGCCTTTTGCCCCCGCT
AACACAAGCGATCTGTGCCTTGCACCGCCGAGCAAGAGCATCTCCATCGATCGACACCGCCATGGCATCGATGTCGTCGA
GCCTCTCGCTGCCGTGCCTCGCCCTCCAGTGCGACTTGGGCCGGTCGACGTCGACGGTGCTGCTCAGCGTGCCGGAGAAG
AAGGTCGTCGCCACGGCGGCCGACGTCGACGCCCTCATCGCGCCAGCGCTGGCCAACAAGAGCGTACTGCCCACGGCGCG
TGGCTACGTGCTCGCCCGGGACCCCGCCTCCCTGGCCACCTTCCTCTACAGCCCCCAGAGCCGCCGCAAGATCGACCTGC
CGCCGCTAGCCATCGACCAGGACCTGCTCAGGCACGGCGCCCACTGCCTGCTCTCCCACGAGCCCACCGATCCCAGCTGC
GTCGTGCTCCTCGTCGAGCCCAACACCACCTTCATCTGGCACCTCCGCCTCGCCGGTGACCAGACGCAGTGGCAGAGACA
CGAGTACGACATCGGGTCCCAAGTGTACGACGACGACGAGGATGACGAAAAGCATCCGGCCTGGGTCGGGAAGACCGTGA
TCCGCCAGATTAGCGCGTGCCGCGGCAAGTTCTACTTCAACCTGCCCTCGACCGAGCTGGGCGTCGTCGACTTCTCCGCT
---------GGCCCGCCGGCTTTCGGCTCGATCCCCGCCGGGTGCC---ACGAC------GAAGGGGAGTATGCCGTGGT
GGGCAGGGTTTTCCTGGTGGAATCCGGAGGGGAGCTCTACATGGTAAAGCTGCTGATGGACGAGGCCAACCTGAACAAGT
ACACGGGCTTGAGCGTCTACGTGATGGATTTCGAGCGGACG------CGGTGGCGCAGGGTGGGTGATCTCGGCGGCCGC
ACCTTCGTCATGGCGCCAGTCTACGTCGGCGCCTCGTGCGAGGCCGGACGGCTCCGAGGCGACTGCGTGTACGTGGTGTG
CCCAATGTCAAAGGAGTTGCAGGTTTTCGACGTCAAGGCCGGCAGCATCCAGACGCAGAGGCTTGACGAAGCTCCCTTCT
CGAACAACGGA-TTTTGGGTGCTTCCCACTAGCTGCTAAATATCCATATCCATGTGTACGTATAGGTTCACAACTGTGCT
AGTATTATCACCTTGCCTTTGCCATGCTATAACCATGATTAATTCCACAGCAAATTCTCCAGAAAGATTGCATCTTTTCA
GCTACTGTGT-----TCTTGGAAAAGCTACCATGTGTTGTTTAAGAGAACAAA---------------------------
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>chr2A_1_TraesCS2A01G088500
ATAATTTAAAAATATTTAACTTCATATTAGTTAGCCAGGGATAAGCATGCTACTTAAATTCTTCATCATATTTCGTTATT
AGAATAAATAATGAATATATAGGTCCACTCTATTTCTAACTTTTGGTTACATGCATTTCTGAGTTTGAACACTAACCATG
AAGACCAAATAGATTACATATTTTTTAATTAATAACTGGGATATCTCCTATTTTACAAAGCAATGGCACTCCCAGGATAG
ACGTTGAATTTTTTTCTTAGATTATGGAATATATAGATATACGAGTGTATATATTTTGAAATGCAAATTTTTTTGTTAAG
TAATTTAAAATGAAAGTAGAAGTCAGATAGTTTTAAAATATTTTAAAATTGAGTACCTAAGTTTCAATTTCCTATAAAGA
AATCTCAAATTTGATATCCATGTGCAAATTATCAGTTATCTTTTCTTTTGGAAACTTTTTTTTGAAATAATTTATGATTT
TACGGACAATTTATTTTGGAATAATTTAAGATTTCAAGGAAGCACATATTTTACATAACAAGATTTTAAAAAATGAATTC
TTACTAGTGATATTTTTATCAATTTTCATGTTGTACATGCATATGTTCTTTTCCCACATATATACGCTCCATATTTGATA
ACCATGAAATTTTGGAGTCATCATTCTAAATGTTTATGTGGTCTAAACTTTGCATTCGAACCAATTAAAATTAAATAGCA
ACGTAAATCCCCATAAAATTATGGGTAATAAAAATAGTGGTAGAGAATATAAAAAATTACAAGCCAAAAACGACTTTTGG
ATTCCAGGCTCCAATGATGTTCAGAAAAATCGTAAATAAAATTTGAAGTGCAAAGAAGCTTGCTATTTGTTTTAAATGTA
AACATGGATGTGATCTATGTACCTATAAAAATCTAATGTATATTTTTTTATATGTGGGCACATAAAAAACACATATTATA
TGTATATATGAAATAGAAAATATTGCATGCACTGTTTTACATGGTATGGTTGGTTTGAGCCTAGGGTTGCCAGAACAAAC
GTCAGCTCAATCATAAACTATTTGAACCCTCAAATATTTTCTTTTCTCTTCCTCACAATTTTTCTTTTCGGAAAAATGGG
AATCTGTTCAGTAAAATGCGTAATGGGCCAGTCCAGTGGCCGCATTACGTAATGGGCTGTTGCCTCCTAGCAGCCCAAAC
AGTGCTAGCCGGCCCCAATTCGCCCAACCGCAGCCCACCTCTACCCCCGCTAACCCTAGCGCCAGGGGGAGAGCGTCGGC
TCGATCCCCCACTCGCCCCCCCCCGCGACACACGCGCGCGCCCGCCGCCGCCAGGGCACCTTGCGCCTTTTGCCCCCGCT
AACACAAGCGATCTGTGCCTTGCACCGCCGAGCAAGAGCATCTCCATCGATCGACACCGCCATGGCATCGATGTCGTCGA
GCCTCTCGCTGCCGTGCCTCGCCCTCCAGTGCGACTTGGGCCGGTCGACGTCGACGGTGCTGCTCAGCGTGCCGGAGAAG
AAGGTCGTCGCCACGGCGGCCGACGTCGACGCCCTCATCGCGCCAGCGCTGGCCAACAAGAGCGTACTGCCCACGGCGCG
TGGCTACGTGCTCGCCCGGGACCCCGCCTCCCTGGCCACCTTCCTCTACAGCCCCCAGAGCCGCCGCAAGATCGACCTGC
CGCCGCTAGCCATCGACCAGGACCTGCTCAGGCACGGCGCCCACTGCCTGCTCTCCCACGAGCCCACCGATCCCAGCTGC
GTCGTGCTCCTCGTCGAGCCCAACACCACCTTCATCTGGCACCTCCGCCTCGCCGGTGACCAGACGCAGTGGCAGAGACA
CGAGTACGACATCGGGTCCCAAGTGTACGACGACGACGAGGATGACGAAAAGCATCCGGCCTGGGTCGGGAAGACCGTGA
TCCGCCAGATTAGCGCGTGCCGCGGCAAGTTCTACTTCAACCTGCCCTCGACCGAGCTGGGCGTCGTCGACTTCTCCGCT
---------GGCCCGCCGGCTTTCGGCTCGATCCCCGCCGGGTGCC---ACGAC------GAAGGGGAGTATGCCGTGGT
GGGCAGGGTTTTCCTGGTGGAATCCGGAGGGGAGCTCTACATGGTAAAGCTGCTGATGGACGAGGCCAACCTGAACAAGT
ACACGGGCTTGAGCGTCTACGTGATGGATTTCGAGCGGACG------CGGTGGCGCAGGGTGGGTGATCTCGGCGGCCGC
ACCTTCGTCATGGCGCCAGTCTACGTCGGCGCCTCGTGCGAGGCCGGACGGCTCCGAGGCGACTGCGTGTACGTGGTGTG
CCCAATGTCAAAGGAGTTGCAGGTTTTCGACGTCAAGGCCGGCAGCATCCAGACGCAGAGGCTTGACGAAGCTCCCTTCT
CGAACAACGGA-TTTTGGGTGCTTCCCACTAGCTGCTAAATATCCATATCCATGTGTACGTATAGGTTCACAACTGTGCT
AGTATTATCACCTTGCCTTTGCCATGCTATAACCATGATTAATTCCACAGCAAATTCTCCAGAAAGATTGCATCTTTTCA
GCTACTGTGT-----TCTTGGAAAAGCTACCATGTGTTGTTTAAGAGAACAAAGGGAAA------ATCATCTAGAACTGT
TTGTTGGTATTTGACCTGAATAT--CTGGTGTATGTCAGATTTGGGGAGATTTTGAAGAATATTGGTAC-TTATATTTAT
AATGTTGAACATGTTTATTTTTGTACAAATATACAAAAATGCTTTGAGGGAGTACCAGCAGGGGGAAAAAATCTTCGGAT
GGAAAGGCATGTAAGCCAATACAACATCAAAATTTCTGCAAAAATTATG---TAATACACAATAAGCAATTTCTGGCCAA
AGGGAAAGCACTATGATTTCTCTGCAAATTATGTAATGTAAGGGAAGCTTTTTTTTTTACCGTAGAGAGAAGTTCGTCGA
ATGCCTCTCATTATGGAATTATCAACAGCGATCACTGTGAGAAATATGCCATTATTTGTTGATCCCCCTTGATGATCTAG
CAAGAAAAGAGCGGCCTTGGCAACGTCGATCATTGACCGAAGGTGTCGGAGGAACAATTAAGATCGATAACCTCACCCTT
TTTGATAAGTCCCACCCATCCTCTAGATCGATGGTCTTGCAATCCTGCCTTTGCCCCGCAAGCTGCCAACGCCGTCCTAG
CCGCCGGTTCACATCCCGATGCGGAC-GCAAACCCTAGAGGAGGCTAGGCTCAGTTGCTTCCATCACCCCGAGGGGTTTG
TGTCGTTTGAGGGGAGAGAGCAGATAGATTGGGTGGGAGTTGGGGTGACCAGATTATGAGGAGGGATTCTGTCGCTAACG
TTTTAGTTGGAGAAAAACTTTGCTTCCGCTTCTGCGGGTCGAGGGAGGGGAGCCTAGCGAACACAGGGTCCAGCTCTTTG
CCGCAGATCTTGTCCACATATGGTCAATCAAACGACCG-AAAAAAATTAAGATGATGTGGACACACGAGAGGGCAGAGTT
A------------------------------------------------------------------------------C
GGGTTAGTGGGCTAAATGATCCAGGTTTGAGCTTCTCCAGCTCCTATTTAATTTGAGCATAGCTCCTCCTATGTCAACAG
CC-AATATTTTTATCAAGGAAGGCAA
>chr2D_1183
CCTGCTAC------------------------------------------------------------------------
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----------------------------------------------------------------------CAGCCCAAAT
GGTGCCAGCCGGCCCCAATCGGCCCAACCGCAGCCCACCTCTACCCCCGCTAACCCTAGCGCCAGGGGGAG-GCGTCGGC
TCGATCCCCACTCGCT--CCCTCCGCGACACACGCGCGCGCCCGCCGCCGC------------CGCCTTTTGCCCCCGCT
AACACAAGCGATCTGTGCCTTGCACCGCCGAGCAAGAGAATCTCCATCGATCGACACCGCCATGGCATCGATGCCGTCGA
GCCTCTCGCTGCCGTGCCTCGCCATGCAGCGCGACATGGGCCGGTCGACGTCGACGGTGCTGCTCAGCGTGCCGGAGAAG
AAAGTCGTCGCCACGGGGGCGGACGTCGACGCCCTCATCGCGCCGGCGCTGGCCAACAAGACCGTCCTGCCCACGGCGCG
CGGCTACGTGCTCGCCCGGGACCCCGCCTCCCTGGCCACCTTCCTCTACAGTCCCCAGAGCCGCCGCAAGATCGACCTGC
CGCCGCTAGCCATCGACCAGGACCTGCTCTGGCAGGGCGCCCACTGCTTGCTCTCCCACGAGCCCACCGATCCCAGCTGC
ATCGTGCTCCTCGTCGAGCCCAACACCACCTTCATCTGGCACCTCCGCCTCGCCGGTGACCAGCCGCAGTGGCAGAGACA
CGAGTACGACATCGGATCGCAAGTGTACGACGACGACGAGGACGACGAAAAGCATCCGGCCTGGATCGGGAAGACCGTGA
TCCGCCAGATCGGCGCGTGCCGCGGCAAGTTCTACTTCAACCCGGCCTCGCCCGAGCTGGGCGTCCTCGACTTCCCCGCC
TCACCAGCCGGCCCGCTGGCATTCGGCTGGATCCCCGCCGGCTGCC---ACGAC------GAAGGGGAGTATGCCGTGGT
GGGCAGGGTGTTCCTGGTGGAATCCGAGGGGGAGCTCTACATGGTAAAGCTGCTGATGGACGAGGCCAACCTGAACAAGT
ACACGGGCTTGAGCGTCTACGTGATGGATTTCGAGCGGACG------CGGTGGCGCAGGGTGGGTGATCTCGGCGGCCGC
ACCTTCGTCATGGCGCCAGTCTACGTCGGCGCCTCGTGCGACGCCGGACGGCTGCGAGCCGACTGCGTGTACGTGGCGTG
CCCAATGTCGAGGGAGCTGCAGGTTTTCGACGTCAAGGACGGGAGCATCGAGACGCAGAGGCTTGACGAAGCTCCCTTCT
CGAACAAAGCA-TTTTGGGTGCTTCCTACTGGCTGCTAAATATCCATATCC-----------------------------
---ATTATCACCTTGCGTTTGCCATGCTATAACCATGATTAATTCCACAATAAATTCTTCAGAAAGATTGCATCTTTTCA
GCTACCATGTTTTTCTCTTGGAAAAGCTACTATGTGTTGTTTAAGAGAGCAAAGGGAAAATCACCATCATCTAAAACTGT
TTGTTGGTTTTTGATCTGAATATATCTGGTGTATATCAGATTTGGGGAGATTTTGAAGAATATTGGTATTTTATATTTAA
AATGTTGAATAAGTTTATTTTTGTACAAATATACAAAAATGCTTTGAGGGAGGACCAGCAGGGAGAAT---TCTTCGCAT
GGAAAGGCATGTAAGCCAATACAACATCAAGATTTTTGCAAAAATTATCTGATACTACACAATATGCAATTTCTGGCCAA
AGGGAAAGAACTATGATTTCTCTACAAATTATGTAATGTAAGGGAATCAA-TTCTTTTACTGTAGACAGGAGGTCGTTGA
ATACCTCTCATTATAGAATTATCAACGGCGATCGCTGTGAGAATTATGCCATTATTTGTTGATCCACCCTGATGGTCTAG
CAAGAAAAGAGCAGCCTTGGCAACAGCGATCATTGATCGAAGGTGTTGGAGGAACAATTAAAATCGATAGCCTCAACCTT
TCTGATAAGTCCCACCAATCCTCTAGATCGATGGTCTTGCAATCCTGCCTTTGCCCCGCAAGCCGCGATCGCCA-CATAG
CCACTGGTTCTCATCCCGATTGTGGATGCAAACCCTCGAGGAGGCTGGGCTCAGTTGCTTCCATCACCACGGGGGCTTTG
TGTCATGTGGGGAGAGAGAGAAGATAGATGGGGTGGCAGTCGGGCAAACCAGATTATGAGGAGGGATTTTGTCGCTGATG
TTTCGGTTGGAGAAAAACTTCGTTTCCGCTTCTACGGGTTGAGGGAGGGGAGTCCAGCAAACACGGGGTCCAAGTCTTTG
CTGTAGATCTTGTCCATATATGGTCAACCAAACGGCCAAAAAAAATTTAAGATGATGTGGACACATGAGAGGCCACAGAA
ATCAGGTTGTTGGGATGAACTATTTAGGTATTATTATAGATATAATAAAAAAGGCTTGCAGTCTTACCAGTTAGCACTGC
GGGTTGGTGGGCTAAACGGTCCAGGTTTGAGCCTCTCCACCTCCTATTTAATTTGAGCATAGCTCCTCCTATGTCAACAG
CCAAATTTTTTTATCAAGGAAGGCAA
>chr2A_1490
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-------------------------------------------------GTCGACGATGCTGCTCAGTTTGCCGGACAAG
AAGCTCGTGGA----GGCGCCGACGTCGGCGACGTCCTGGCGC---CGCTGACCAACAAGACCATCCTGCCGACGGCATG
AGGCTACGTGCTTGCCTGGGACCCCGCCTCCCTGGCCACCTTCCTCTACAGCCCACAGAGCCGCCGCAAGATCGACCTGC
CGCCGTTAGCCATCGACCAAGACCTCCTCA---TAGGCTACAACTGCCTGCTCTCCGGCGAGCCCACCGACCCCAGCTGC
GTCGTGCTCCTCGTCGAGACCGACGCCGCCTTCATCTGGCACGTCCGTGTCGCTGGAG---AGACGCGATGGCAGAGGCA
CGAGTACGACATCGGATCCCAGCCGT---------------ACGACGTGAATGATCCCACGCTGCTGGAGAAGTCGGTGA
TCGTCCCGATTGCCGCGTGCCGGGGCAAGTTCTACTTCAACCCGACCCCGACCGAGCTGCGCGTCATCGACTTCTCCT--
-------CCGGCCCGCCGGCGTTTGGCTCGGTCACCGCCGGGTACGAGTACGACTACCAAGAACGTGGTCATGACACGAT
GGCGAGCGTTTTCCTGGTGGAATCTGAGGGGGAGCTCTACATGGTGAAGCTGCTGAGCGAGGTGGCCGACATGCACACGG
TCACCGGGTTCAGCGTCCACGTGAAGGATTTCGGGAGCACGACGATGCGGTGGCGCATGGTGGACGACCTCGGCGACCGC
GCGTTCGTCCCGTTGTTGTTCTACTTCGGCGGCTCGTGCGAGGGCGGCCGGCTGCGAGGGGACTGCGTGTACGCCGCGTA
CCCCGTGGCAAGGAAGCTGCAGGTTTTCGATGTCAAGGACGGGAGCATGGAGGCGCACAAGCTTGACGAAGCTCC-----
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>chr2A_1661
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------------------------------------------------------------CCGCCGCAAGATCGACCTGG
CGCCGCTAGCCATGGACCAGGACCTGCTGAGGCTCGGCGCCCACTGTCTGCTCTCCGACGAGCCCACCGATCCCAGCTGC
GTCGTGCTGCTCGTCGAGCCTAACACCACCTTCATCTGGTACCTCCGCCTCGCCGGAAACCAGACGCAGTGGGAGAGACA
CGAGTACGACATTGGGTCCCAAGTTT------ACGACGAGGACCACGAAAAGCATCCGGCCTGGATCGGGAAGACCGTGA
TCCGCCAGATTGGCGCGTGCCGCGGCAAGTTCTACTTCAACCCGGCCTCGATCGAGCTGGGCGTCATCGACTTCTCCGCC
TCACCCGCCGGCCCGCCGGCGTTCGGATCGATCCTCACCAGGTGCC---ACGAGCACGATGAAGGGGAGTATGCCGTGGT
GGGCAGGGTTTTCCTGGTGGAATCCGAGGGGGAGCTCTACATGGTAAACCTGCTGATGGACGAGGCCGACCTGAACAAGT
ACACGGGCTTGAGCGTCTACGCGATGGATTTCGAGCGGACG------CGGTGGCGTAGGGTGGGTGATCTCGGCGGCCGC
GCATTCGTCATGGCGCCGGTGTACGTTGGCGCCTCATGCGAGGCCGGCCGGCTGAGAGGCGACTGCGTGTACGTGGTGCA
CCCAATGTCGAGGGAGCTGCAGGTTTTCGACGTCAAGGACGGGAGTATCCAGACGCAGAGGCTTCACGAAGCTCCCTTCT
CGAATAAAGCATTTTTGGGTGCTTCCTACTA-------------------------------------------------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S
S----S-------------SS--------------------------------------------------S--------
---------SSSSSSSSS---S-----------------------------SSSSSSSSSSSS-----------------
--------------------------------------S----------------------------------S------
-----------------------S-S---S-----S--------------------------------------------
----------------S---------------------------S----------------S---S--------------
S-------------------------------------------------------------------------------
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------------------------------------------S---------------------S---------------
-----------S------------------------------S-S--------------------S-------------S
--------------------S-----------------------------------------------------------
--------------------------SS----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
-----------S----S---------------------S---S-------------------------------------
-------S-S----------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------S--------------------------------SS-------S---------------------
-----SS-----------------------S-----------------S------------------------S------
--------S-----S-------------------S---------------------------------S----------S
---------S-S----------------------------------------S----------S---SSSS------S--
------------------------------S----S------------S-----S---------S---------------
--------S--------------S----------------------S-SSS--S------S-----S--S--S----S--
--S-----------S-----------S------S---------S---------------------S--S-----S-----
------------S-----------SS----------S---------S--------------S-------S-----S----
-S--------------S----------------------------------------------S--S-S----SS-S---
--S-S-----S---------SSS-SS----------S---------S---------------------S--S---S----
----S-S--S--S-------S--------S------S---S---SSS---------------------S-------S-S-
---SS---------------S-S----------S-----S------------S-S---S-----S-------SS------
-S-S------------S----------S------S--S-------S-------------------S------S--S--SS
--------------------------------------------------------------------------------
-----S----------S-S-------------S------S----------------------------------------
------S-------------------
>forward_245
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-----------------------------------------------------------------GCACTCCCAGGATAG
ACGTT---------------------------------------------------------------------------
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>reverse_1185
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----------------------------------------------------------------TCCTAGCAGCCCAAAC
AGTG----------------------------------------------------------------------------
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>forward_1043
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---------------------------------------------------------------GGGTTGCCAGAACAAAC
GTC-----------------------------------------------------------------------------
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>reverse_2865
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----------------------------------------------------------------AGCAATTTCTGGCCAA
AGGG----------------------------------------------------------------------------
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--------------------------
