>input_sequence_47657
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----------------------------------------------------ATGGACATGGATGCATCATTTCGTTCAG
CAATCGTCAATGGAGAGACTCTCAAGATGTTTGTTGGGCAAAGAGTGCGTACAGTACTTAAGTTCCAACACACTCAAGGT
GGAGTTCTTGTTGGGCAGTCGACTGATGGACATCAGTTGACCATCAGAGGTGCCTCGGAAGGCCGTGAATCACATTATCT
AGAGGTTATTGGGATTGCTGACAACGACCAGTCCATCAGTGCTGAAACTTGCAAAGATTTTGATGACAACTTTGGTGAGA
TTTAATGCACCTATATTGGTTTTATTTGCCTCTTCAAGGTTGTATTATACTTGCTGCTGCGGGGTTCAACATTGAAGTTT
GTTATGTTTTACATAATTCCATAGACATCAGAGGAGCTTTGCCTTTTTCTTAATTATTATTTTCCATTACCACCTTCAAT
CAGTAACGAGCAGCTGAACTTTTTCTTTT------CAAAAG-----TTGGCAGTGGTCAATGCTATGAGATCCCCTCACG
CACTTGTTAGCTTGTTCTTTGGCTTTGCCATTCTTGATTATAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAGAAAATATTTGTATTTCTCATCCATACTCATGTTATTGTA
GAACATCAGCACAATACAGGTGATTGCTTGTGTTGGGATGCAAAATTCTAGAATTTAGAAATTATATTCCTTAGTTCTCT
TAAGACTATTGCCCGATACT--TAAGAATCTAAAGCCAGAACTGACTTGGGTCGTTATGCAAAATGACTCACATCTTTAG
TTTCATC--CTAAATGGGGTAATTCAGAAGTGCACCCCGGAACACTATATTCTGAATGTAAAAAACAGTGTTAAAAACTT
TATTCAAGTACTCCCTCCGTTCACAAATATAAGATGTTTTAGCGTTTTCCTGAATCAGATGTATATAGACACGTTTTAGT
GTGTGTGTGTTTATTCATTTCAGTTCGTATGTAGTCCATATTGAAG--TCCAAAACATCTTATATTTGTGAACGGGGGGA
GTGAATGCTTCAGTCCTTTATATGCTTGTAAC-TTTTCATGGAAAACGAATAATTTTCATGCCATGTGTATTAGTGCTCT
-AAAAATTGAATCCTTGGGAGTTCTTCGTCAATGTGTAAAGGTGAA-TTTTTTTCCACGAAAATTTACACAATGGTAATG
GGCCCGAACATTTACTACTTGTGTATCTTTTCTGGATTTT-TTGTCATTTTAAATCA-TTTTCCAATTTAAGTGTTCATT
ATCTTACAATAGATCTCAGGTTAACATATTATTTTTATTTTGGTAGGAAAAATTTAGGTCCTATAGCTCATAAGCTGCCG
CGCATAGCCCAACATTTCAGCATTCTTATCGCAGCTAATTGCAAATAAGTCTTCATTTTGGGGAATCTTTCTTGTGGCTT
CAAGTTTTATGTATATCTTTGTTATGTTCTTGCAGGCCAAACAGGAGTAATTATATATTTTTTACATTGTAGCAGCTTTC
CTTTTGGCCAACACTGTTGCTCCGCCTT--------------------------------GTAACAACATTAAACCCTGT
TATCATGTTTATGTCGCAGATGCTGATGCGTTCAATGGGCTGTGCAAGCTTGTGGTGAACGGCAAGGTGAAAGAAGTTCT
CCTGTAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G184600
CGCTAGCTATCCCTTCCCTTCTGGGCTTGCCCCAAAT--AACCTCCTTTTCGCCGCGCCGCCCGGCTCACCCGTTCCGAA
TCCAGCAGAAGTGCAGAACCCCAGCGCGGCCGAGAGCAGGGCAGTCCTCCGCTGCGCCACTTCGAAGGCTTCCATCTCC-
-----GTCCGGGGTGGGCTGCGCAGAAGTAGACAGATTGATCGAGGCTCATCTCCTCTCTCGGTACGAACATTCCCGACT
GACCTCGCTTTCTTCGAATATTTTTCCGAAGCCTGCTTCGTCCCCTCTCCGAATCTTCGCCCGATACTCCAACGCATCGT
GTTAGTTGTGCGTTCGATTTGACTGGTCCAAAATGGTAGATTGTTTTCACTGAATT-TTGGGGGTTTAGGTTTAACTGAA
CCCTAACGCAGTCCGCCAGTCCCACCCCTGCCCGGGCTGATTTCGCCTTTGCGTACACCGTTCTGGTCTTCGATTTCTGT
GTGCAGTCGAATCCAGATCCGGAAGTTTCCGCGATCTCTGACCCCTCTAGTCTGTCGTTCCACTGGATTTTCACCCCAGT
CGCGGATTTCCTGGTATGAACACTGTTCCTGTTCTTTCTTCAGCGCG-CCAAGGCCGATCTCCTGTGGGACAGTGACCAA
TGCGCGCAAGAAGCCATTGAAATGTAAAATGGAGAACCGTGTAATTGATCCAGTTTGAAACAAGTCTTTTTGTCCATTAC
GGACGGATTATGACAGCAGACAGTTGTGAATACTGCTGCTGCAGTGAATTTTAGTAGCCATCATGGCGCTGCTATAACTT
ATGGCATAGCTGCCAATTTAGTTAATTAGGAT-GTAGCATTGTTGTCTCTCATTCATCGCACCAATGCATGCGGCCAAGG
CTTGGTCATGTGCTTGCTTGCTTGGTATGATGATAGTGACAAGGAGATGCGTGGGCAGTTC-TTTTGTTCTCTTCTTATT
GGTTGATATTGTTAAATTGAGTTGATAATTCTGAAGTTAACACTTTGCAGACATGGACATGGATGCATCATTTCGTTCAG
CAATCGTCAATGGAGAGACTCTCAAGATGTTTGTTGGGCAAAGAGTGCGTACAGTACTTAAGTTCCAACACACTCAAGGT
GGAGTTCTTGTTGGGCAGTCGACTGATGGACATCAGTTGACCATCAGAGGTGCCTCGGAAGGCCGTGAATCACATTATCT
AGAGGTTATTGGGATTGCTGACAACGACCAGTCCATCAGTGCTGAAACTTGCAAAGATTTTGATGACAACTTTGGTGAGA
TTTAATGCACCTATATTGGTTTTATTTGCCTCTTCAAGGTTGTATTATACTTGCTGCTGCGGGGTTCAACATTGAAGTTT
GTTATGTTTTACATAATTCCATAGACATCAGAGGAGCTTTGCCTTTTTCTTAATTATTATTTTCCATTACCACCTTCAAT
CAGTAACGAGCAGCTGAACTTTTTCTTTT------CAAAAG-----TTGGCAGTGGTCAATGCTATGAGATCCCCTCACG
CACTTGTTAGCTTGTTCTTTGGCTTTGCCATTCTTGATTATAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAGAAAATATTTGTATTTCTCATCCATACTCATGTTATTGTA
GAACATCAGCACAATACAGGTGATTGCTTGTGTTGGGATGCAAAATTCTAGAATTTAGAAATTATATTCCTTAGTTCTCT
TAAGACTATTGCCCGATACT--TAAGAATCTAAAGCCAGAACTGACTTGGGTCGTTATGCAAAATGACTCACATCTTTAG
TTTCATC--CTAAATGGGGTAATTCAGAAGTGCACCCCGGAACACTATATTCTGAATGTAAAAAACAGTGTTAAAAACTT
TATTCAAGTACTCCCTCCGTTCACAAATATAAGATGTTTTAGCGTTTTCCTGAATCAGATGTATATAGACACGTTTTAGT
GTGTGTGTGTTTATTCATTTCAGTTCGTATGTAGTCCATATTGAAG--TCCAAAACATCTTATATTTGTGAACGGGGGGA
GTGAATGCTTCAGTCCTTTATATGCTTGTAAC-TTTTCATGGAAAACGAATAATTTTCATGCCATGTGTATTAGTGCTCT
-AAAAATTGAATCCTTGGGAGTTCTTCGTCAATGTGTAAAGGTGAA-TTTTTTTCCACGAAAATTTACACAATGGTAATG
GGCCCGAACATTTACTACTTGTGTATCTTTTCTGGATTTT-TTGTCATTTTAAATCA-TTTTCCAATTTAAGTGTTCATT
ATCTTACAATAGATCTCAGGTTAACATATTATTTTTATTTTGGTAGGAAAAATTTAGGTCCTATAGCTCATAAGCTGCCG
CGCATAGCCCAACATTTCAGCATTCTTATCGCAGCTAATTGCAAATAAGTCTTCATTTTGGGGAATCTTTCTTGTGGCTT
CAAGTTTTATGTATATCTTTGTTATGTTCTTGCAGGCCAAACAGGAGTAATTATATATTTTTTACATTGTAGCAGCTTTC
CTTTTGGCCAACACTGTTGCTCCGCCTT--------------------------------GTAACAACATTAAACCCTGT
TATCATGTTTATGTCGCAGATGCTGATGCGTTCAATGGGCTGTGCAAGCTTGTGGTGAACGGCAAGGTGAAAGAAGTTCT
CCTGTAGAGGAGCTCATTTGCGAGATCAAGCTTACTATGAAGACAGTTTGCGTTGTGTGTGTCTCCCGGAGTCGATGAGC
TTATTACTGCTTCCGCTTGTAGTAACCACTACTAGTTAGCAATGCAAAGCAAACCTTAGGTTTATGTTATCGTCGCTTGG
ATTTAAATCCTGGAACTGGAAGGTTGCATTTTGCCTGATGCCTGAGCTCTTTCTCCCATTCACCTTGATGAGGAGCTGAG
CTGATATTTGTGCTGGGCATTGCGAAGTCGTCCAAAGTCCAAACTGATGGCAAATTAAATGTCCAGAC-----ATGGAGA
GTGTGCCCCTTCCTAGTTTGATTGCTTGCACACTCAGCATGTTGGAAGCGAGTAGCTTCTGACCGATCTTGCTTGCGAAC
TAACCAAGTAGTTCATCCATCAACGTTACTGCAAATTCACATTGGCATGTTTGGGTTTATCTTGGACGCATCTTTG----
------CGCGCCC--ACGCGAATGAAGTGCCTTAAATTAATCAAGGAACAGGATGCTTACAATC-----ATCTAAAATAA
GCTAAAA--AA---TAACAGGTGGTGCATCGAGCACGGAAATGAGACTGCTTATTCTCGTTTTCTCATCATTATCATTGG
ATCACAAATGGTCCTATTATTTCACGAAAACTTACGTTTTCAAAAACTTGCAAATACGTTTGTGGAAATTGTAAGAGAGC
GGCTTCT-ATGTACTACCTTATTCCAAAAGAAAAAAATTGGCTCTACTTGTGCAAAATTCAAAAAAC--AATCTAAAATG
CTTAACGTCGCATTCAACGCCATCTGTTTGCTGCCCAGTCCGGCCCATGCTATTGCGAGCATTGGCTGAGCGGTCGTCTT
GAGCATAGTTCTTTCAGCCAGATTTTGCTTTTCTCCAGCTACGGGCGTGATTCTCAAAAAAAAAAAAGAAAAAGAAAAAA
AAAGAAGAAGAAGCTACTGGCGTTACACGATTGGATTTACACTCACCACTCCACTCCACGCTCCTCGGTTCCCCCTC
>chr3B_5
----AGCTATCCCTTCCATTCTGGGTTTGCCCCCAAATAAACCTTCTTTTCGCCGCGCCGCCCGGCTCACCCGTTCCGAA
TCCAGCAGAAGCGCAGAACCCCAGCGCGGCCGAGAGCAGGGCAGTCCTCCGCTGCGCCACTTCGAAGGCTTCCATCTCCG
TCTGCGTCCGGGGTGGGGTGCGCAGGAGTAGATCGATTGATCGAGGCTCATCTCCTCTCTCGGTA-GAAAATTCCCGACT
AACCTCGCTTTCTTGGAATATTTTTCCCAAGCCTGCTTCGTCCCCTCTCTGAATCTTCGCCCGATACTCCAACGCATCGT
GTTAGTTGTTCGTTCGATTTGACTGGTCCAAAACGGCAGATTGTTTTCCCAGAATC-TTGGGGGTTTAGGTTTAACTGAA
CCCTAACGCAGTC--CCACTCCCACCCCTGCTCGGGCTGATTTCGCCTTTGTGTACACCGCTCTGGTCTTCGATTTCTGT
GTGCAGTATAATCCAGATCCGGAAGTTTCCGCGATCTCTCACCCGTCTAGTCTGTCGTTCCACTGGATGTTCACTCCAGT
CGCGGATTTCCTGGTATGAACATTGTTCCTGTTCTTTCTTCAGCACGCCCAAGGCCGATCTCCTGTAGGACAGTGACCAA
TGCGCGCAAGAAACTATTGAAATGTAAAATGGACAACCGTGTGATTGATCCAGTTTGATACAAGTCTTTTTGTTGATTAC
GGACAGATTATGACAGCAGACAGCTGTGAATACTGCTGCTGCAGTGAATTTTAGTAGCCATCAAGGTGCTCTCATGACTT
A-GGTGTAGCTGCCGATTTTGTTAATTAGCAT-GT---ATTGTTGTTTCTCGTTCATGGCACCAATGCATGCGGCCGATG
CTT-GTTCATG---TGCTTGCTTGGTATGATGATACTGACAAGGAGAGGCGTGGGCAGTTC-TTT-GTTCTCTTCTTATT
GGTTGATATTGTTAAATTGAGTTGATAATTCTGAAGTT-ACACTTTGCAGACATGGACATGGATGTGTCATTTCGTTCAG
CAATCGTCAATGGAGATACTCTCAAGATGTTTGTTGGGCAAAGAGTGCGCACAGTACTTAAGGTCCAACACACTCAAGGT
GGAATTCTTGTTGGGCAGTCGACTGATGGACATCAGTTGACCATCAGAGGTGCTTCGGAAGGCCGTGAATCACATTATCT
AGAGGTTGTTGGGATTGCTGACAACGACCAGTCCATCAGTGCTGAGAGTTGCAAAGATTTTGGTGACGACTTTGGTGAGA
TTTGATGCACCTATATTGGTTTTATTTGCCTCTTCAAGGTTGTATTATACTTGCTGCTGCGGGGTTCAACATTGAAGTTT
GTTATGTTTTACATAATTCCATAGACATCAGAGGAGCTTTTCCTTTTTCTTAATTATTATTTTCCATTACCACCTTCAAT
CAGTAACGAGCAGCTGAACTTTTTCTTTTTCTTTTCAAATG-----TTGGCAGTGGTTAGTGCTATGAGATCCCCTCACG
CACTTGTTAGCTTGTTCTTTGGCTTTGCCATTCTTGATTATAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAGCAAATATTTGTATTTCTCATCCATACTCACGTTATTGTA
GAACATCAGCACAACACAGGTGATTGCTTGTGTTGGGATGCAAAATTCTAGAATTTGGAAATTATATTCTTTTGTTCTCT
TAAGACTATTGTCCGATACTTATAAGAATCTAAAGCCAGAACTGACTTGGGTCGTTATGCAAAATGACTCGCATCTTTAG
TTTCATCCTCTAAATGGGGTAATTCAGAAGTGCACCCCGGAACACTATTTTCTGAATGTAAAAAATAGTGTTT-AAATTT
TATTCAAGTACTCCCTCCGTTCTCAAATATAAGATGTCTTAGCTTTTTTCTGAATCAGATG--------CACGTTTTA--
GTGTGTGTGTTCACTCATTTCAATCCGTATGTAGTCCGTATTGAAATATCCAAAACGTCTTATATTTGTGAACGAAGGGA
GTAAATGCTTCAGTCCTTTATATGCTTGTAA---------------------ATTTTCATGCCATGTGTATTAGTGCTTT
TAAAAATTGAATTCTTGGGAGTTCTTCGTCAATGTGCAAAGGTGAAATTTTTTTCCGTGAAAATTTACACGATGGTAATG
GGCTCGAACATTTACTAATTGTGTATCTTTTCTGGATTTT-TTGTCATA-TAAATAATTTTTCCAATTTAAGTGTTCATT
ATCTTACAATAGATCTCAGGTTAACATATTATTTATATTTTGGTAGGAAAATTTTAGGTTCTATAGCTCATAAGCTGCCC
CACATAGCCCAACATTTCAGCATTCTTATCGCAGCTAATTGCAAATAAGTCTTCATTTTGGGGAATCTTTCTCGTGGCTT
CAAGTTTTATGTATATCTTTGTTATGTTCTTACAGGCAAAACAGGAGTAATTATA-TTTTTTTACATTGTACCAGCTTTC
CTTTAGGCCAGCACTGTTGTTCCCCCTT--------------------------------GTAACAACATTAAACCATGT
TATCATGTTTATGTTGCAGATGCTGATGCGTTCAATGGGCTGTGCAAGCTTGTGGTGAACGTCAAGGTGAAGGAAGTTTT
CCTGTAGAGGAAGTCATTTGGGAGATCAAGCTTACTATGAAGACAGTTTGTGTTGTGTGTGTCTCCCGGAGTCGATGAGC
TTATTACTGCCTTCGCTTGTAGTAACTAGTACTAGTAAGCAATGCATAGCAAACCTTAGGTTTATATTATCGTTGCTTAG
ATTTAAATCCTGGAACTGGAAGGTTGCATTTTGCGTGATGCCTGAGCTCTTTCTCCCATTCACCTTGATGAGGAGCTGAG
CTGATATTTGTGCTGGGCATTGCGAAGTACTCCAAAGTCCAAACTGATGGCAAACTGAATGTCCAGACCAGACATGGAGA
GTGTGCCCCTTCCTAGTTTGATTGCTTGCACACT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3A_5
AGCATCT-----CTTCCCTTGTGGGCTTGCCCCAGAT--AACCTCCTTTTCGCCGCGCCGCCCGGCTCACCCGTTCCGAA
TCCAGCAGAAGCGCAGAACCCCAGCGCGGCCGAGAGCCGGGCAGTCCTCCGCTGCGCCACTTCGAAGGCTTCCATCTCCG
TCTGCGTCCGGGGTGGGGTGTGCAGGAGTAGATAGATTGATCGAGGCTCATCTCCTCTCTCGGTACGGAAATTCCCGACC
TACCTCGCTTTCTTCGAATATTTTTCCGAAACCTGCTTCGTCCCCTCTCCGAATCTTCGCCCGATACTCCAACGCATCGT
GTTAGTTTTGCGTTCGATTTGACTGGTCCAGAATGGCAGATTGTTTTCCCAGAATTATTTGGGGTTTAGGTTTATCTGAA
CCCTAACGCAGTC--CCAC------CCCTGCTCGGGCTGATTTCACCCTTGTGTACACCGTTCTGGTCTTCGATTTCTGT
GTGCAGTCGAATCCAGATCCGGAAGTTTCCGCGATCTCTCACCCGTCTAGTCTGTCGTTCCACTGGATGTTCACCCTAGT
CGCGGATTTCCTGGTATGAACATTGTTCCTGTTCTTTCTTCAGCACGACCAAGGCCCATCTCCTGTAGGACAGTGACCAA
TGCGCGCAAGAAGCCATTGAAATGTAAAATGGACAACCGTGTAATTGATCCAGTTTGAAACAAGTCCTTTTGTCGATTAC
GGACGGATTATGACAGCATACAGTTGTGAATACTGCTGCTGCAGTGAATTTTAGTAGCCATCATGGTGCTGTCATG----
-TGGTGTAGCTACCGATTTAGTTAGTTAGCAAAGT---ATTGTTGTTTCTCATTCATTGCATCAATGCATACGGCCGATG
CTTGGTTCATG---TGCTTGCTTGGTATGATGATAGTGACAAGGAGATGCGTGGACAGTTCTTTT-GTTCTCTTCTTATT
GGTTGATATTGTTAAATTGAGTTGATAATTCTGAAGTTAACATTTTGCAGACATGGACATGGATGCGTCATTTCGTTCAG
CAATCGTCAATGGAGAGACTCTCAAGATGTTTGTTGGGCAAAGAGTGCGTACAGTACTTAAGGTCCAACACACTCAAGGT
GGAGTTCTTGTTGCGCAGTCGACTGATGGACATCAGTTGACCATCAGAGGTGCCTCGGAAGGCCGTGAATCACATTATCT
AGAGGTTATTGGGATTGCTGACAACGACCAGTCCATCAGTGCTGAAAGTTGCAAAGATTTTGATGACAACTTTGGTGAGA
TTTGATGCACCTATATTGGTTTTATTTGCCTCTTCAAGGTTGTATTATACTTGCTGCTGCGGGGTTCAACATTGCAGTTT
GTTATGTTTTACATAATTCCATAGACATCAGAGGAGCTTTGCCTTTAAAAAAAAA------TTCCATTACAACCTTCAAT
CATTTACGAGCAGCTGAACTTTTTCTTTT------CTTTTAATTTTTTTGCAGTGGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAAATATTTGCATTTCTCATCCATACTCACGTTATTGTA
GAACATCAGCAGAACACACGTGATTGCTTGTGTTGGGATGCAAAATTCTAGAATTTAGAAATTGTATTCCTCTGTTCTCT
TAAGACTATTGTTCGATACT--TAAGAATCTAAAGCCAGAACTGACTTGGGTGGTTATGCAAAATGACTCACATCTTTAG
TTT-----------------------------------------------------------AAATAGTGTTAAAAAGTT
TATTCAAGTACTCCCTCCGTTCACAAACATAAGATGTTTTAGCTTTTTTCTGAATCAGATGTATATAGACATGTTTTAGT
GTGTGCTTGTTCACTCAGTTCAGTCCGTATTTAGTCCATATTGAAATACCCAAAACATCTTATATTTGTGAACGGAGGGA
GTAAATGCTTCAGTCCTTTATATGCTTGTAAAATTTTCATGGAAAACGAATAATTTTCATGCCATGT--ATTAGTGCTCC
-AAAAATTGAATTCTTGGGAGCTCTTCGTCAATGTGCAAAGGTGAT-TTTTTGTCCACGAAAATTTACAC---------G
GGCTCGAACATTTACTACTTGTGCATCTTTTCTGGATTTTTTTGTCATTTTAAATCATTTTTCCAGTATAAGTGTTCATT
ATCTTACAATAGATCTCAGGTTAACATATTATTTATATTTTGGTAGGAAAAA-TTAGGTCCTATAGCTCATAAGCTGCCG
TGCATAGCCCAACATTTCAGCATTCTTACCGCAGCTAATTGCAAATAAGTCTTCATTTTGGGGAAGCTTTCTGGTGGCTT
TGAGTTTTATGTATATCTTTGATATGTTCTTGCAGGCAAAACAGGAGTAATTATA-ATTTTTTACATTGTAGCAGCTTTC
CTTTTGGCCAACACTGTTGCTCCCGCTTTCAAAAAAAAAAAAACACTGTTGCTCCCCCTTGTAACAACATTAAACCCTGT
TATCATGTTTATATTGCAGATGCTGATGCGTTCAATGGGCTGTGCAAGCTTGTGGTGAACGGCAAGGTGAAGGAAGTTTT
CCTGTAGAGGAAGTCATTTGCGAGATCAAGCTCACTATGAAGACAGTTTGTGTTGTGTGTGTGTGTCTC---------GC
TTATTACTGCCTTCACTTGTAGTAATCACTACTAGTAAGCAATGCATAGCAAACCTTAGGTTTATATTATCGTTGCTTGG
ATTTAAATCCTGGAACTGGAAGGCTGCATTTTGCGTGAGCTCTCTC--------CCCATTCACCTTGACGAGGAGCTGAG
CTGATATTTGTGTCGGGCATTGCGAAGTACTCCAAAGTCCAAACTGATGCCAAATTGAATGTCCAGAC-----ATGGAGA
GTGAGTCCCTTCCTGGTTTGATTGCTTGCACACTCAGCATGTTG--AGCGAGTAGCTTCTGACCGATTTTGCTTGCCGTC
CAACCTAGTGGTTCATCCATCGATGTTACTGCAGATTCGCATTGGCATGTTTGGGTTTATTTCGGACCCATCTTTGTGTG
TGTGCGCGCGTGCGTGCACGAATGAAGTGCCTTAAATTAATTAAGGAACGGGATGCTTACAATCATCTAATCTAAAATAA
GCTAAAA--AAAATTAACAGGTGGTGCATCGAGCACTGAAACGAGACTGCGCATCTCATTTTC----TCATCATCACTGG
ATCACAGATGATCCTTTTATTTC-------------------AAAACTTGCAAATACGTTT-------TTGTA-GAGAGC
GGCTTCTCATGTAGTATCAGATTCCAAAAGAAAAAA-ATGGCTCTACTTGCGCAAAATTCTAAAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3B_2935
GTTG----------------------------------------------------------------------------
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-------------------------------------------G--AGCGAGTAGCTTCTGACCGATCTTGCTTGCGATC
TAACCAAGTAGTTCATCCATCAATGTTACTGCGAATTTGCATTGGCATGTTTGTGTTTATTTCGGACGCATCTTTGTGTT
TGTGCGCGCGCGC--GCACGAATGAAGTGCCTTAAATTAATTAAGGAACAGGATGCTTACAATC-----ATCTAAAATAA
GCTAAAAAAAA---TAACAGGTGGTGCATCGAGCACGGAAATGAGACTGCTTATTCTCGTTTTCTCATCATTATCACTGG
ATCACAAATGATCCTATTATTTCACG----------------AAAACTTGCAAATACGTTTGTGGAAATTGTA-GAGAGC
GGCTTCTCATATACTACCATATTCCAAAAGAAAAAG-TTGGCTCTACTTGTGCAAAATTCAAAAAAAATAATCTAAAATG
CTTAACGTCGTATTCAACGCCATCTGTTTGCTGCTCAGTCCGGCCCATGCCATTGCGAGCATTGGCCGAGCAGTCGTCTT
CAGCATAGTTGTTTCAGCCAGATTTTGCTT--------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
S--S----------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-----------------S-------S------S------------------------------------S----------
S-------------------------------------------------------------------------------
------------------------------------S-----------S-S-----------------------------
-------------SS---S------------S-------------------S----------------------------
---------------------------------------S----S-----------------------S-----------
----------------------S---------------------S---------------------S-------------
---------------------------------S----------------------------------------S-----
------------------------------------------------------------------S----SS--S----
----SS--------S--------------S-----SSS--------S----------S------------------S-S-
------SSSSSSSS---------------------------------------------------S--------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------S-S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------------------------S---------
--------------S---------------------------------------------------------S-------
-----------S--------------------------------------------------------------------
------------------------------------------------S----------------S-----------S--
-------------------------------------------S----S-------------------------------
-----------S-S----------S--------------------S-----------------------------S----
--S----------------------------S------------------------------------------------
------------S-----------------------S---------------------------------S---------
---S----------------------------------------------------------------------------
----------------------------------S---------------------------------------------
------------------------------------------------------------------------S-------
-------------------------------------S-----------------S------------------------
-----------------------S--------------------------------------------------------
--------------S--------------------------------------------------------S------S-
-----------SS-------------------------------------S-----------------------------
----------S-S-----------------------S---------S------------------S-------S------
----------------------------------S---------------------------------------------
----------------------------SS--------------------------S-----------------------
--------------------------------------------SS--------------------------------S-
-----------------------S--------------S---------------------S-S-----------------
-----------S---S-S-----------------------S--------------------------------------
----------------------------------------------------------------------------S---
----------S---------------SSSSSSSSSSSSSSSS-------------------------------S------
------------------S-----------------S-----------------------------S-------------
----------S-----------------------S---------------S---------------S----S--------
S---------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_414
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACTGAA
CCCTAACGCAGTCC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1480
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGTTGGCAGTGGTCAATGCT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_415
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTGAA
CCCTAACGCAGTCCG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2471
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------AATGGTAATG
GGCCCGAACA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_2129
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------GTGCACCCCGGAACACTATA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_3960
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------CACTCACCACTCCACTCCAC------------------
