>input_sequence_47539
--------------------------------------------------------------------------------
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---------------------------------------------------------------------CTATATAAGCC
GCCCTTCGCTCTCTGTTTCTTACACCGG----TCTCAGTCTCACACATACAA------GTAAGCCAGCAAGCAAGGGTCA
AAATGTGGAGGTCCATCTTGCTCGTGGTGGTGGTCGCGCTGGCGCTGGCGCCGGCGCCGGCGCTGGGGATCCCGTTCACC
GAGAAGGACCTCGCCTCGGAGGAGAACCTGCGGGGGCTCTACGAGAGGTGGAGGAGCCACTACACGGTGTCGCGGAGGGG
CCTCGGCGCCGACGCGGAGGAGCGCCGGTTCAACGTGTTCAAGGAGAACGCGCGGTACATCCACGAGGGCAACAAGAAGG
ACAGGCCCTTCAGGCTGGCGCTCAACAAGTTCGCCGACATGACCACGGACGAGTTCCGGCGCACGTACGCCGGGTCCAGG
GTGCGGCACCACCTTTCCCTGAGCGGCGGCCGCCGGGGCGACGGCAGCTTCAGGTACGGCGACGCCGACAACCTGCCGCC
GGCGGTGGACTGGCGGCAGAAGGGCGCGGTCACCGCCATCAAGGACCAAGGGCAGTGCGGTACGTGCATGCATACACTCC
TGAGTTTCTTTCTTTCCTTTTCGGCCATTGGTTGTGTCAAAAGCTGTGTGATTCATTCGACTGTGGGAGGCCAAAAACTG
TTCT---AAGGGAGCTGCTGGGCGTTCTCGACGATCGTGGCTGTGGAGGGCATCAACAAGATCAGGACGGGGAAGCTGGT
GTCGCTGTCGGAGCAGGAGCTCATGGACTGCGACAACGTCAACAACCAGGGCTGCGACGGCGGCCTCATGGACTACGCCT
TCCAGTTCATCCACAAGAACGGGATCACCACCGAGTCCAACTACCCGTATCAAGGCGAGCAGGGCAGCTGCGACCTGGCA
AAGGTGA----CAATAATAATCCCCGGCTTCCGGCTGCCCTAGACTTGCCAGGCTGAGAAACTTGTCTCAAAATTTTAAA
AATCACATGCCAAATGTTGCAGGAAAAGGCTCATGCCGTGACAATCGACGGCTACGAGGATGTCCCCGCCAACGATGAGT
CTGCCCTACAGAAAGCCGTCGCAGGCCAGCCCGTGTCCGTTGCAATAGATGCCAGCGGCAACGACTTCCAGTTCTACTCA
GAGGTACGTGATCCCATCCAACTCCGTGCAATTGATACACATGTTTG-----CTTGCTCTTGTCGGTGCTATGTTCGGTG
TTAAGTGACAACTCTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATCACCCTCAACGAACGCAGGGCGTCTTCACTGGAGAATGCAGCACGGATCTCGACCACG
GTGTCGCCGCCGTCGGGTACGGCACTACTCGGGATGGCACCAAATACTGGATCGTGAAGAACTCGTGGGGAGAGGACTGG
GGTGAGAAGGGCTACATCAGGATGCAGCGCGGGGTGTCGCAGGCAGAGGGGCAGTGTGGCATCGCCATGCAGGCGTCGTA
CCCAACTAAGTCGGCACCACGTGCTAGGGCAGTCAGGGAAGGGTCTCATACTGATGAGCTCTGATG-----GCACACATA
CGATCATTCGGAGTGCAACCTCTGCGTTGAGGAGAACTGAATCTCCCACTGTTGTGTTATTTACTTTATGCAAGATGTTA
C--TATGAATGTA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr4B_1_TraesCS4B01G076200
ACCTTGGGGTCCATGCCAGGTCTTCAGATCATTCTTTCTTAGTGTTCTTGAAGTTCAAACAATGATGTTCTTAAGCATCA
CGACTTCTCATTATCCTGATAATATCTTCGATCCTCGTTGAAACCAATACCTATCACCTGAAGGTCACGTAATCACTAAA
CAATATGTGGTTATCTCTTAGGTCTTCGTGAGGATGCGACCGAGGAGATTATACGAACAGCATGAGGAAATGCACTGTAA
GCACCCTTGC--------AAAAAAAAAAGCATTGTAAGCAAGGCCCGAACAGGTCCACATCGCACCACCGCGGTGCCTCT
TCCCGGCGGGAGTTGCCCTCTGCGGGAGAAGCAACTGTGCGACGATGCGGCGGTACCATTGGTGATAGAGGAAGAAGGCG
AGCTGGGGAGGAAACGAATGCATATGCTCTTTCCAGACGACGTCACATATGATATGATTGGAACCATGTTGGCACTACTT
CTTTTATTAATAAGAGGGCCGTATGCATCGTGCTGATGCAGAGGCCGGGGTTTCTCCCCCTTTTCTAAAAAAAAAGACGA
CGTCACATATGACCCTAACGTCTCATCTCCAGAGCAAACACTTTGAACCGGAACTAGAAAAGCCCCTTTACGCCAACGGC
CTTACGCATCACACATACCAATCCTTTTCCTTCCATGAACAG-AAAAAAATATAAGAGCCTCGACATATGA-TATGATTA
TCTCAAATGTGGCATGCAGAAACTGATCAACTAGATCCACGCCAACAACAGAGTGCTCTGCTAGGCCAGTT-CGCGTTCC
ACTCCAACACTCCTGCACTGCATCCACCAATCTGAAAGCGAGCTCGTGCCCGAATCCGGCCTTCCTTTCCATTTATTCCG
CGGCTTATCCATA----TCCTCCAAAAGTTCATGCCTTCCTTCCCGCCACAGCTCACC----TCCCATCCCATCATCTCG
CCGCCATCCATCATGCAAAACCGTAACCAACT-----GAAGCCTCTCGATCACCCTTGTAAC-----GTCTATATAAGCC
GCCCTTCGCTCTCTGTTTCTTACACCGG----TCTCAGTCTCACACATACAA------GTAAGCCAGCAAGCAAGGGTCA
AAATGTGGAGGTCCATCTTGCTCGTGGTGGTGGTCGCGCTGGCGCTGGCGCCGGCGCCGGCGCTGGGGATCCCGTTCACC
GAGAAGGACCTCGCCTCGGAGGAGAACCTGCGGGGGCTCTACGAGAGGTGGAGGAGCCACTACACGGTGTCGCGGAGGGG
CCTCGGCGCCGACGCGGAGGAGCGCCGGTTCAACGTGTTCAAGGAGAACGCGCGGTACATCCACGAGGGCAACAAGAAGG
ACAGGCCCTTCAGGCTGGCGCTCAACAAGTTCGCCGACATGACCACGGACGAGTTCCGGCGCACGTACGCCGGGTCCAGG
GTGCGGCACCACCTTTCCCTGAGCGGCGGCCGCCGGGGCGACGGCAGCTTCAGGTACGGCGACGCCGACAACCTGCCGCC
GGCGGTGGACTGGCGGCAGAAGGGCGCGGTCACCGCCATCAAGGACCAAGGGCAGTGCGGTACGTGCATGCATACACTCC
TGAGTTTCTTTCTTTCCTTTTCGGCCATTGGTTGTGTCAAAAGCTGTGTGATTCATTCGACTGTGGGAGGCCAAAAACTG
TTCT---AAGGGAGCTGCTGGGCGTTCTCGACGATCGTGGCTGTGGAGGGCATCAACAAGATCAGGACGGGGAAGCTGGT
GTCGCTGTCGGAGCAGGAGCTCATGGACTGCGACAACGTCAACAACCAGGGCTGCGACGGCGGCCTCATGGACTACGCCT
TCCAGTTCATCCACAAGAACGGGATCACCACCGAGTCCAACTACCCGTATCAAGGCGAGCAGGGCAGCTGCGACCTGGCA
AAGGTGA----CAATAATAATCCCCGGCTTCCGGCTGCCCTAGACTTGCCAGGCTGAGAAACTTGTCTCAAAATTTTAAA
AATCACATGCCAAATGTTGCAGGAAAAGGCTCATGCCGTGACAATCGACGGCTACGAGGATGTCCCCGCCAACGATGAGT
CTGCCCTACAGAAAGCCGTCGCAGGCCAGCCCGTGTCCGTTGCAATAGATGCCAGCGGCAACGACTTCCAGTTCTACTCA
GAGGTACGTGATCCCATCCAACTCCGTGCAATTGATACACATGTTTG-----CTTGCTCTTGTCGGTGCTATGTTCGGTG
TTAAGTGACAACTCTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATCACCCTCAACGAACGCAGGGCGTCTTCACTGGAGAATGCAGCACGGATCTCGACCACG
GTGTCGCCGCCGTCGGGTACGGCACTACTCGGGATGGCACCAAATACTGGATCGTGAAGAACTCGTGGGGAGAGGACTGG
GGTGAGAAGGGCTACATCAGGATGCAGCGCGGGGTGTCGCAGGCAGAGGGGCAGTGTGGCATCGCCATGCAGGCGTCGTA
CCCAACTAAGTCGGCACCACGTGCTAGGGCAGTCAGGGAAGGGTCTCATACTGATGAGCTCTGATG-----GCACACATA
CGATCATTCGGAGTGCAACCTCTGCGTTGAGGAGAACTGAATCTCCCACTGTTGTGTTATTTACTTTATGCAAGATGTTA
C--TATGAATGTAATAAACGTAGGCAAAGGACATTATAGCAAAAGAATTGCAACTAATTTGTCAAATCAAATGAATTATG
TGAAATTCAAGATTGGGCTGTATTCGGATTGGTTCTCGTCTTTTCATCTCGTATTAGCGTGTTGTTGACTTCACTATGAC
CTGTCTGGTTGTGCCTGGTCTAATCGCCCTCGACACTACGGTTCTTTTGCATAGTACTCCCTCCTTATGACACAATCGTT
TACTGTTTCACTTGTGACCCCAAAACGGTCAGAGTGAGTGCTATAATCAATTTTGCGTGGTTTCAGAGTTAATTTATTGG
GAGTACCTAGAACTTATCTAGATGGGATATAATTTGGTCTCATTCACTTTGAAAACAAAAATAAATACAGTCCACGTCAG
CACACACGCATCTTATAGCATCACATCCAATGGCTATAAAAGATGAATGAGACCAAATTATATCTCATCTAGATGAGTTG
TAGCAAAACTGTAATTTATTTCTGTGAGGCAACCAAACCAAAATATTTTAGCCCACAGAATTACGAGCCTTCCCTTAAAA
GTTGATATTTAAGGTGTGGAAGACCTACAATTACCGGACAGTAACAAGTATGGTAGAGCCCACCATAATTCATTCATCTA
ATAAGTCTCTTCTACTGTTTCTCATATCTATTGTAAATATCATGGCTATGTCTTTTAGAGGATCACAAGATTTATCTCAA
GCTAGGTGAAAATTTGAACAAAATGCATAAAAACATTAACTTGGCACTATGGAGAATAACTTGAGAAAGTGTTTTCCCTA
TACAAATACAGAGCCATCATGACTAAGCAAGCATGCCAAACAGCGGCACACATGACTGCATAATAACTACTCCCTCCATT
CCACAATGTAGTGCTTCCTCTATCTACGTGCTTCAACTTTGACCGTAAATTTAACTACCAAGACCGATTGCGGCGGGAGC
AAAAATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTCAATTATATAATTT
>chr4D_48
-----------------------------------------------TTGAAGTTCAAACAATGATGTTCTTAAGCATCA
TGACTTCTCGTTATCCTCATAATATCTTCGCTCCTCATTGAAACCAACACCTATCACCTGAAGGTCACGTAATCACTAAA
CAATATGTGGTTATCTCTTAGGTCTTCGTGAGGATGCGGCCGATGAGATTATACGAACAACATGAGGAAATGCATTGTAA
GCACCCTCGCAAAAAAGAAAAAAAAGAAGCATTGTAAGCAAGGCCCGAACAGGTCCACAGCGCACCACCGCGGTGCCTCT
TCCCAGCGGGAGTTGCCCTGTGCGGGAGGGGCAACTGCGCGACGATGTGGGGGTACCATTGGTGATAGGGG---------
-----------------ATGCATGTGCTCTTTCCCGACCG----------------------------------------
--------------------------------------------------------------------------------
CGTCACATATGACCCTAACGTCTCATCTCCAAAGCAAACAATTTGAACCGGAACTAAAAAAGGCCCTTTACGCCAACGGC
CTTACGCATCACACATACCAATCCTTTTCCTTCCATGAACAGAAAAAAATTAAAAGAGCCTCGAAATATGAGTATGATTA
TCTCAAATGTGGCATGCAGAAACTGATCAACTAGATCCACGCCAACACCAGAGTGCTCTGCTAGGCCAGTTTCGCGTTCC
ACTCCAACACTCCTGCACTGCATCCGCCAATCTGAAA---------------------GCCTTCCTTTCCATTTATTCCG
CGGCTTATCCCTA----TCCTCCAAAAGTTGATGGCTTCCTTCCCGCCACAGCTCACC----TCCCACCCC--CATCTCG
CCGCCATCCACCATGCAAAACCGTAACCAACTCAACTGAAGCCTCTCGACCACCCTTGTAAGCCCAGGTCTATATAAGCC
GCCTTTCGCTCTCTGCTTCTTACACCAACCGATCTCAGTCTCACACATACAGTAGGTTGTAAGCCAGCAAGCGACGGTCA
CAATGTGGAGGTCCATCTTGCTCGCGGCGGTGGTCGCGCTGGCGCTGGCGCCGGCGCCGGCGCTGGGGATCCCGTTCACG
GAGAAAGACCTGGCCTCGGAGGAGAACCTGCGGGGGCTCTACGAGAGGTGGAGGAGCCACTACACGGTGTCGCGGAGGGG
CCTCGGCGCCGACGCGGAGGAGCGCCGGTTCAACGTGTTCAAGGAGAACGCGCGGTACGTCCACGAGGGCAACAAGAAGG
ACAGGCCCTTCAGGCTGGCGCTCAACAAGTTCGCCGACATGACCACGGACGAGTTCCGGCGCACGTACGCCGGGTCCAGG
GTGCGGCACCACCTTTCCCTCAGCGGCGGCCGCCGGGGCGACGGCAGCTTCAGGTACGGCGACGCCGACAACCTGCCGCC
GGCGGTGGACTGGCGGCAGAAGGGTGCGGTCACCGCCATCAAGGACCAAGGCCAGTGCGGTACGTGCATG----CACTCA
TGAGTTTCTTTCTTTTCGGCCATTGG--TGGTTGTGTCAAAAGCTGTGTGATTCATTCGGCTGTGGGAGGCCAAAAACTT
TTC----AAGGGAGCTGCTGGGCGTTCTCGACGATCGTGGCGGTGGAGGGCATCAACAAGATCAGGACGGGGAAGCTGGT
GTCGCTGTCGGAGCAGGAGCTCATGGACTGTGACAACGTCAACAACCAGGGCTGCGACGGCGGCCTCATGGACTACGCCT
TCCAGTTCATCCACAAGAATGGGATCACCACCGAGTCCAACTACCCGTACCAAGGCGAGCAGGGCAGCTGCGACCAGGCA
AAGGTGA----CAA---TAATCCCCGGCTCCCGGCTGCTCTGAACTTGCCAGGCTGAGAATCTTGTCTCAAAACTTGTT-
-----------AAATGTTGCAGGAAAAGGCTCATAACGTGACGATCGACGGCTACGAGGATGTCCCCGCCAACGACGAGT
CTGCCCTACAGAAAGCCGTCGCTGGCCAGCCCGTGTCCGTGGCAATAGACGCCAGCGGCAACGACTTCCAGTTCTACTCA
GAGGTACGTGATCCGTTCCAACTCCGTGCAATTGATACACATGTTTG-----CTTGCTCTTGTCTGCGCTATGTTCAGTG
CTGCGTGACAACTCTGATCACCCAGTGTGAATTGCAGAAAACATCGACATTGAAGGCTAAGGTTGCAGGAACCATACTTC
TATAGTTTTGTGCCAAAAATCACTAATTCCGAGGCTAATTTTTTGCAAAAAACACTAGTTGCCAGATTTGGCTTTGATGA
CGATTATGACAGGTAGGGCCCACAAATGACGATGTGGCATAACTGTTCATGCTGGACGTCGTTACAGATTTTCTTTTACC
AAAAACTACCTCCCTTCTTCAAAAAAAAAAAACAGCCCTGGGCACATGGCCGCCTCCGCAGTGTCCTCCTGGAGCTGCCC
CTCCCTCCCGGCGCCGTCTGACCCCTGCCGGCGCCGCCCCTCCCTCGCCGAGCCGCCTCCCCATGCCCTCCACCGCTCCT
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGTCGCGGCCGACGCCGCCGCTGCTCGCGCCCGTCGCCGG
CGACGCCGCTGCTGCCCCTGCGCACGTAGGCCTCCATCGCTCTGAGCTGACCCGCCGGATGCCCGTAGGGCCGGCGCCGG
CGCCGCTCCCGCCCATGCGCGGCTGGTGCCGCTGCTGCTCCTCCCGAGTTCGCAAGGGGCCAGGCTGTCCCGAAGCGCCG
CGTCGGACCTGGTGGCCTGCAGGGCCGCGACCATCCAGATCCCGACAGCACCCCCTCCACCCCCCTCCCCTCGCCGGCGA
CAAGACCATGGCTGGTGTACTGCTATTCTGCTCGCCGGCGACAAGATCCTGGACTTGATTGCTTTTTTATTTTTTTATTG
AAGGGCCTCTTGGTAAAATTACAGGGACCGTTTCCTATATCTATATATCCCCCGTCTAACGTCGTCTATCACGAACCGTT
ACGCCATGTCAGCAAATGTGGGGCCCACCTGTCATAATCATCATTAAAATGGCCAAATTCATTGACTAGTGTTTTTTGCA
AAAAATTAGCCTGGAAATTAGTGTTTTTGGGCACAAAACTATAGACTTGTGATTTCTGCAAGACTGTGCTTCAATGTCGA
TGTTTTCTGCAATTCACTCAATCACCCTCAACGAACGCAGGGCGTCTTCACCGGAGAATGCAGCACGGATCTCGACCACG
GCGTCGCCGCCGTCGGGTACGGCACTACCAGGGATGGCACCAAGTACTGGATCGTCAAGAACTCGTGGGGAGAGGACTGG
GGCGAGAAGGGCTACATCAGGATGCAGCGCGGGGTGTCGCAGCCAGAGGGGCAGTGTGGCATCGCCATGCAGGCGTCCTA
CCCAACTAAGTCGGCACCACATGCCAGGACGGTCAGGGAAGGGTCTCATAGTGATGAGCTCTAGATGGCATGCACACATA
TGATCATTCGGAGTGCAAGCTCTGCGTTGAGGAGAACTGAATCTCCCACTGTTGTGTTATTTACTTTATGCAAGATGTTA
C--CACAAATGTAATAAACGTAAGCAAAGGACATTATAGCAAAAGAATTGCAACTAATTTGTCAAATCAAATGGATTAAG
TGAAATTCAAGACTGGGTTGTATTCGGATTGGTTCTCGTCTTTTCATCTCGTATTAGCGTGTTGTTGGCTTCACTATGAC
CTGTGTGGTTGTGCCTGGTCTAATCGCCCTCGACACTACGGTTCTATTGCATAGTACCTCCTCCTTATGACACTATCGTT
TACTGTTTCACTTGTG----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>chr4A_610
--------------------------------------------------------------------------------
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---------------------------------------------------------AAAAGCCCCTTTACGGCAACGGC
CTTACGCATCACACATACCAATCCTTTTCCCTCCATGAACAGAAAATAAATAAAAGAGCCTCGACATATGA-TATGATTA
TCTCAAATGTGGCATGCAGAAACTGATCAACTAGATCCACGCCAACACCAGAGTGCTCTGCTTGGCCAGTT-CGCGTTCC
ACTCCAACACTCCTGCACTGCATCCACCAATCTGAAA---------------------GCCTTCCTTTCCATTTATTCCG
CGGCTTATCCCTAGCTATCCTCCAAAAGTTCATGGCTTCCTTCCCGCCACAGCTCACCTCCGTCCCATCCCATCATCTAG
CCGCCATCCACCATGCAAAACCGTAACCAACTCAACTGAAGCCTCTCGATCACCCCTCCAAC-----GTCTATATAAGCC
GCGCTTCGCTCTGTATTTCTTACACCGG----TCTCAGTCTCACACATACAGTAGGTTGTAAGCCAG--AGCGACGGTCA
CGATGTGGAGGTCCATCTTGCTCGCGGCGGTGGTCGCGCTGGCGCTGGCGCCGGCGCCGGCGCTGGGGATCCCGTTCAGG
GAGGAAGACCTGGCCTCGGAGGAGAGCCTGCGGGGGCTCTACGAGAGGTGGAGGAGCCACTACACGGTGTCGCGGGGGGG
CCTCGGCGCCGACGCGGAGGAGCGCCGGTTCAACGTGTTCAAGGAGAACGCGCGGTACGTCCACGAGGGCAACAAGAAGG
ACAGGCCCTTCAGGCTGGCGCTCAACAAGTTCGCCGACATGACCACGGACGAGTTCCGGCGTACGTACGCCGGGTCCAGG
GTGCGGCACCACCTCTCCCTCAGCGGCGGCCGCCGGGGCGACGGCAGCTTCAGGTACGAAGACGCCAACAACCTGCCGCC
GGCGGTGGACTGGCGGCAGAAGGGCGCCGTCACCGGCATCAAGGACCAAGGGCAGTGCGGTACGTGCA----TACACTCA
TGAGTTTCTTTCTTTTCGGCCGTTGGA-----TGTGTCAAAAACTATGTGATTCATTCTGCTGTGGGAGGCCATAAACTG
TTCAAATAAGGGAGCTGCTGGGCGTTCTCGACGATCGTGGCGGTGGAGGGCATCAACAAGATCAGGACGGGGAAGCTGGT
GTCGCTGTCGGAGCAGGAGCTCATGGACTGCGACAACGTCAACAACCAGGGCTGCGACGGCGGCCTCATGGACTACGCCT
TCCAGTTCATCCACAAGAACGGGATCACCACCGAGTCCAACTACCCGTACCAAGGCGAGCAGGGCAGCTGCGACCAGGCA
AAGGTGAGTGACAA---TAATCCCCGGCTTCCGGCCGTTA------------GCCGAGAATCTTGTCTCAAAATTTTAAA
AATCGCATGCCAAATGTTGCAGGAAAAGGCTCATGCCGTGACGATCGACGGCTACGAGGACGTCCCCGCCAACGACGAGT
CCGCTCTACAGAAAGCCGTCGCCGGCCAGCCCGTGTCCGTGGCAATAGACGCCAGCGGCAACGACTTCCAGTTCTACTCA
GAGGTACGTGATCCGATCCAACTCCGTGCAGTTGATACACAATCACAAATGCCTTGTTCTTGTCTATGCTATGTTCAGTG
ATGAGTGACAACTCTG----------------------------------------------------------------
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--------------------ATCACCCTCAACGAACGCAGGGCGTCTTCACCGGAGAATGCAGCACGGATCTCGACCACG
GCGTCGCCGCCGTCGGGTACGGCACTACCAGGGATGGCACCAAATACTGGATCGTCAAGAACTCGTGGGGAGAGGACTGG
GGTGAGAAAGGCTACATCAGGATGCAGCGCGGGGTGTCGCAGGCAGAGGGGCAGTGTGGCATCGCCATGCAGGCGTCCTA
CCCAACGAAGTCGGCACCACATGCTAGCACAGTCAGGGACGGGTCTCATACGGATGAGCTCTAGATGACATGCATACATG
CGATCATTCCGAGTGCGAGCTCTGCGTTGAGGAGAACTGAATCTCCCACTGTTGTGTTATTTACTTTATGCAAGATGTTA
CCATACGAATGTAATAAGCGTAAGCAAAGGGCATTATAGCAAAAGAATTGCAACTAATTTGTCAAAT------GATTCAA
TGAAATTCAAGATTGGGTTGTATTCAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
S--------S-------S------------S-----S----------S--------------------------------
--------------------------------------S----S---------------S--------------S-----
-------S-----------------S---------------------------------S--------------------
----S--------------S--------SS-------S---------S--S-----------------S--SSSSSSSSS
SSSSSSSSSSSSSSSSS------S----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------------------------S--------S---------------S-----------------------
----------------------------------------------------S---------------------------
-----------------------------------------------S--------------------------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSS----------------------
----------S-----------------------S---------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------------------------S--------------------S-S-----
S-----------------------S--S---------------------------------------------------S
-----S-----S--------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------------------------------SS-------S
---------------S-SSSSSSSSS-S-------------------------------S--------------------
---S-------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-------------------------S----
--------------SSS---------------------S--SS-----------------S-------------------
----S-------------------------------------S--------------------------------S----
----------------------S-----------------S--------S------------------------------
--------------S-------------------------------------------------S-----------S---
S-S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
-S--------------------------SS-------------------------S------------------------
-----------------------------------------------------------------------------S--
--------------------S-------S---------------------------------SSSS--------------
------------------S-------------------------------------------------------------
-----S----------------S--------------------------------------------------S----S-
-----------------S-------------------------------------------------S------------
----S----------------------------------------S-----------SS--------------S------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_444
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TGCTCTTTCCAGACGACGTC------------------------------------
--------------------------------------------------------------------------------
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>reverse_1959
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------CCTAGACTTGCCAGGCTGAG----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>forward_445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTCTTTCCAGACGACGTCA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2043
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------AATCGACGGCTACGAGGATG------------------
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>forward_1212
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CGTTCACC
GAGAAGGACCTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4306
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TACAGTCCACGTCAG
CACAC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
