>input_sequence_47538
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ATGGAGGCGAAGTGC
GCAGCTATCTGGAGCTCGGTCGATGGGAGGAGCGAGGAGTCTGAGATGATTGCTCACCTGCAGTCCATGTTCTGGAGCAA
CAGTGATGCTGCTGTCAACCTTTGCCCTCCAAACACCAGTGCCAATTCTTGTGTTACAGCTAGCACAGTGCACAGTAATT
TGTTCCTTCCTCTTGACATGGAGAGCCATGTTGTCACAACGCCAATGGTTAACACTGGCATGGACCTATGCCTTGATCAC
CGGCATCAGACCGTTACTGGTCACAAGAGGACATCCCATATGGATGAGCAGATCAAGAGAACTAGCAAGAAATCCCGGAC
AGTTCCCTCGGTAAGGCTACGATATCGTGAATGCTACGTTATGCATCCTCTCTTGAAATAAATCCTTTGACTGTTCTAAC
ATTCTGATTGATGCAATTGTTTGCAGGTATCAGGTGCTCTGTGTTTAAGCCTAGCTGATAACGAGACCAATGGTGACACT
GTCAATCAGAGCTCTTCGTCCTGCTGCAGTTCGGAAGAAGATTTGATTGGCGCATCTGAGGAACCCTTTGTTCCGAACCA
GGGTGACAATTCAAGAGGTTGCAAGCGGCCTTCGAAGAATTTGCAGTCTCTTTGTGCAAAGGTTAGGACACGGTTATGTT
ACTCTTGTTCTGATCATGGAATACGAATATTTCTGTTCTCTGACGGTATTTGTGATGCTTCTTACAGAGGAGAAGAGAGA
GGATCAACGAGAAATTGAGAGTACTGCAGCGCCTGATTCCGAATGGAACCAAAGTAAGCTCTCACTGATTGGTTAGTGAT
TCACTTACTGAATAATCAAGAGTCCATCTAACACGGCAATTTTATGCGTTTCCAGGTTGACATTAGCACAATGTTGGAGG
AAGCAGTCCAGTATGTCAAGTTTCTGCAGCTGCAAATAAAGGTAGTACTT----GTTTATGTTCCAGTTAAGCCGTTCGC
CATTCCTGGAAAAATGT---------------------------------------------------------------
-----------------------------------------AACACCGAATTCATCAAACCGTTACAACAAAAGTTTGCA
TGGACAATTCAGAATGTTTGTGCAGGTGCCACACTACCACCGTATTTCCAAAATTCAACATACTCCCTCTGTTCCTAAGT
ATAAGTCTTTTTAGAGATTCCAATATGGACTACATACGGAGAAAAATGAGTGAATCAACACTTTAAAGTATGTCTATATA
CATACATCCGTATGTAGTTCATATTGAATCTCTAAAAAGACTTATATTTAGAAACAGAGGGAGTATATATATATAACACG
TTGGGAGGTTGTTTGGATGTGGGGATATGTTCTTTGGAGCTTCAGATTTGAACAGAATACCAAAACGATCCATAGAACCC
CCCAGTTAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATAAAAGGATTTAAATTTGGCAA
AAGGGGGGAAATTGCTTAATCCTCTGTGCTTTTTTCTATATGATTTGAGAAGGAGGATACAAGAAATTTATTTCAAACAT
GGAGTATTATTCTGATCTTCCCTTGTTCCGAACAGGTCTTGAGCTCTGACGAGACATGGATGTACGCACCTCTCGCCTAC
AATGGTATGGACATCAGCCTGAGTCTGAGAATTACCGCAGACCAAGAATGA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3D_1_TraesCS3D01G433200
TTCTGATTTCTGAATCTAGTTGCCAATCGTTCTGCATCTTAATTAATACCAGCTAGAATGCCGACCCTTGCACAAAACGC
GTTTATCATACTTGATA-------CGAATTCAAGCACGTCTTGAGCTGTCCTAATACTCGAAATAAGGGACTTCATTACT
TCATCCAAACTATTTAATATAGCATTTTCATTAAAAAAAAAAAAGTGCTCCTACGTTTTTTGGGTTGGTTTCAGCAGCGG
CAACTGGCAAGGTTGCCATGTAAAAGTGCAAGCACAGGTGAGAGTTGAAGTACTCGCAAAATGTGGATTACAGATAGCCT
TCACGCAACAGTATATCACATGATGTAACAAATTTCCCTTACATATTGAATCAACTGTTTCAAAGTTTTA-TCTCACAAA
GAGAAATAAGAAGTTGCAAAGTGAGTTGATATTATCTTAATCTACTATATTCCATTTATGATCTGCGAGCACTTCTCCTC
CATGACTATGTCCACTCCAAATTTTCTTAGTCCTGGCCACCCCCTAATCATTTAATAGATATTTTTTGTT----------
------TTGTGGAATTTTGCAACTTTATAACCGATCATATGAATCACTTGGTGGCAATTATTGTTGCCATTCTCTCGTAT
TAAACCATGAGCTTATGGTATTATTGTTCTCTTGGCATTCCCTGGAGGCATCAGTATGACATTATTGCCTCTTTAGATTG
CTCAATGGGCAGACGATTCCCAACACAATCTTTCTAGTTTTTGATGTTGAAGATCCTGGGGGTATGGGTCATTGCTCGAA
GACATAAACTAGTACCCTGCTTAGTTGTCATTCTGCTCTAATTAAGAGTAGGGTGTAACCTCAGTCAAATATATATCTGA
AAAGATTCTCTGGGAACGTAGTATAAATGTACATGTCCCTACCTGCTCTGTACTCACAAGACAACATTACCACAGTCCTT
GCACTAGA-TTTTAGAAGTTTTAGAAATTGCAGTAGAAGGTTCCGATCGACATTAGTCCAACAGAATGGAGGCGAAGTGC
GCAGCTATCTGGAGCTCGGTCGATGGGAGGAGCGAGGAGTCTGAGATGATTGCTCACCTGCAGTCCATGTTCTGGAGCAA
CAGTGATGCTGCTGTCAACCTTTGCCCTCCAAACACCAGTGCCAATTCTTGTGTTACAGCTAGCACAGTGCACAGTAATT
TGTTCCTTCCTCTTGACATGGAGAGCCATGTTGTCACAACGCCAATGGTTAACACTGGCATGGACCTATGCCTTGATCAC
CGGCATCAGACCGTTACTGGTCACAAGAGGACATCCCATATGGATGAGCAGATCAAGAGAACTAGCAAGAAATCCCGGAC
AGTTCCCTCGGTAAGGCTACGATATCGTGAATGCTACGTTATGCATCCTCTCTTGAAATAAATCCTTTGACTGTTCTAAC
ATTCTGATTGATGCAATTGTTTGCAGGTATCAGGTGCTCTGTGTTTAAGCCTAGCTGATAACGAGACCAATGGTGACACT
GTCAATCAGAGCTCTTCGTCCTGCTGCAGTTCGGAAGAAGATTTGATTGGCGCATCTGAGGAACCCTTTGTTCCGAACCA
GGGTGACAATTCAAGAGGTTGCAAGCGGCCTTCGAAGAATTTGCAGTCTCTTTGTGCAAAGGTTAGGACACGGTTATGTT
ACTCTTGTTCTGATCATGGAATACGAATATTTCTGTTCTCTGACGGTATTTGTGATGCTTCTTACAGAGGAGAAGAGAGA
GGATCAACGAGAAATTGAGAGTACTGCAGCGCCTGATTCCGAATGGAACCAAAGTAAGCTCTCACTGATTGGTTAGTGAT
TCACTTACTGAATAATCAAGAGTCCATCTAACACGGCAATTTTATGCGTTTCCAGGTTGACATTAGCACAATGTTGGAGG
AAGCAGTCCAGTATGTCAAGTTTCTGCAGCTGCAAATAAAGGTAGTACTT----GTTTATGTTCCAGTTAAGCCGTTCGC
CATTCCTGGAAAAATGT---------------------------------------------------------------
-----------------------------------------AACACCGAATTCATCAAACCGTTACAACAAAAGTTTGCA
TGGACAATTCAGAATGTTTGTGCAGGTGCCACACTACCACCGTATTTCCAAAATTCAACATACTCCCTCTGTTCCTAAGT
ATAAGTCTTTTTAGAGATTCCAATATGGACTACATACGGAGAAAAATGAGTGAATCAACACTTTAAAGTATGTCTATATA
CATACATCCGTATGTAGTTCATATTGAATCTCTAAAAAGACTTATATTTAGAAACAGAGGGAGTATATATATATAACACG
TTGGGAGGTTGTTTGGATGTGGGGATATGTTCTTTGGAGCTTCAGATTTGAACAGAATACCAAAACGATCCATAGAACCC
CCCAGTTAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATAAAAGGATTTAAATTTGGCAA
AAGGGGGGAAATTGCTTAATCCTCTGTGCTTTTTTCTATATGATTTGAGAAGGAGGATACAAGAAATTTATTTCAAACAT
GGAGTATTATTCTGATCTTCCCTTGTTCCGAACAGGTCTTGAGCTCTGACGAGACATGGATGTACGCACCTCTCGCCTAC
AATGGTATGGACATCAGCCTGAGTCTGAGAATTACCGCAGACCAAGAATGAACTGGTCATAATCCGAAGCCTTGTTGCTG
TCAAGTCAAACTCAGTACATGGTGCATTTGTTCAAGATCTTAACCCTGACTTTGAATTGTTCATTTGCTTCTTGTGACTT
AGAGGAAGGTGTTGCCTTGCCAGATACAGTAAGTAAATATTGTACGAATCAAATAAGTTGGAGCATGCCATATGTAGCAA
GGAAACAAT-----------------------------------------------------------------------
------------------------------------------------------GTATCAAATAAGTCTGATTAATGATG
ATGACATTTCTTGGCTCAGTGATTTTCTTATCATCGAAGCAAAAACTTTCAAGTCTGATTAATTATAAACATTAAAATAA
GGTATGCATTGCCAGTTTTTGGCATATAAGAATAGATCCTGGAAACAAATAAATAATTAAAATCTCCAAACTACTTTGAC
AAAGAGAGATTTAGCACCTTGTGGCTCTCATGTTCCATTAGGTAGCTCTGGTAGGGATGTAAACTGAGTCCTGCTTATCG
GTCTAACAGTTCAATAAAGTATTTT-TTCCGGGAAAAATGAACTATCAAGCTCACCATTTATTGCGCCATTTACATCCCT
AAGCTCTGGCATCTGATGGTAATTTGGTTTGTGCTGCTCAAAAGCTTTATCTTGGATAGGAAAGATATTGTTCAAAGCCA
GAAAGTGCAACTTG-CAATGCCAAGTGCTTGTAGCACTACAGTAGTGAATCATGAGTTGCCATTTTGTATGCCGCAAAAT
AGGTTGCCAAAGTTGCATCAATAATAGATTGAT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTACGTGATCCATATGC
TCAG------------------------TTAACCAGTAATATAGGCGTTAATGAAGAATCCTCTATTTCGCTAATCACTA
ATTTCAGTGTGCATACATGTAGCTTTCACAACAGCTAACAAGATATCTTCTGCTTTACTTGGTGCCCTAAGCTTTATCTA
ATAATTGTGATTGAGGTGTCCAACTATTGTGGTTCTTGAGTTGAGCAGCATCTGGCAGGCATTTAACACTGTTGAATATA
TGTATAGGCTATCATCGT----ATGTATGGTTAG
>chr3B_1
TTCTGATTTCTGAATCTAGTTGCCAATCATTCTGCATCTTAGTTAATACCAGCTAGAATGCTGACCCTTGCACAAAACGC
GTTTATCATACTTGATA-------CGAATTTAAGCACGTCTTGAGCTGTCCTAATACTCGAAATAAGGGACTTCATTACT
TCATCCAAACTATTTAATATAGCATTTCATT-----AAAAAAATGTACTCCTACTTTTTTTGGTC-GGTTTCAGCAGCGG
CAACTGGCAAGATTGCCATGTAAAAGTGCAAGGACAGGTGAGAGTTGAAGTACTCGCAAAATGTGAATTACAGATAGCCT
TGCATAT-------------TGATGTAAAAAATTTCCCTTA------------ACTGTTGCAAAGTTTTA-TCTCACAAA
GAGAAATAAGAAGTTGCAAACTGAGTTCATATTATCTTAATATACCCCATTCCGTTTATGATCTGCGAGCACTTCTCCTC
CATGACTATGTCCACTGCAAATTTTCTTAGTCCTGGCCACCCCCTAATCATTTAACAGATATTTTTTGTTTTTGACTAAT
ATCGTCTTGTGGAATTTTGCAACTTTATAACTGATCATATCAATCACTTGGTGGCAATTATTGTTGCCATTCTCTCGTAT
TAAACCATGAGCTTATGGTATTATCGTTCTCTTGGCATTCCGTGGAGGCATCAGTATGACATTATTGCCTCTTTAGATTG
CTCAATGGGCAGACGATTCCCAACACAATCTTTCTAGTTTTTGATGTTGAAGATCCTGAGGGTATGGGTCATTGCTCGAA
GACATAAACTAGTACCCTGCTTAGTTGTCATTCTGCTCTAATTAAGAGTAGGGTGTAAGCTCAGTCAAATATATATCTGA
AAAGATTCTCTGGGAACGTAGTATAAATGTACATGTCCCTACCTGCTCTGTACTCACAAGACAACATTACCACAGTCCTT
GCACTAGATTTTTAGAAGTTTTAGAAATTGCAGTAGAAGGTTCCGGTCGACATTAGCCCAACAAAATGGAGGCGAAGTGC
GCAGCTATCTGGAGCTCTGTCGATGGGAGGAGCGAGGAGTCTGAGATGATTGCTCACCTGCAGTCCATGTTCTGGAGCAA
CAGTGATGCTGCTGTCAACCTTTGCTCTCCAAGCACCAGTGCCAATTCTTGTGTTGCAGCTAGCACAGTGCATAGTAATT
TGTTCCTTCCTCTTGACATGGAGAGCCATA---TCACAACCCCAATGGTGAACACTGGCATGGACCTATGCTTTGATCAC
CGGCATCAGACCGTTACTGGTCACAAGAGGACATCCCATATGGATGAGCAGATCAAGAGAACTAGCCAGAAATCCCGGAC
TGTTCCCTCGGTAAGGCTACGATATTGTGAATGCTAAGTTATGCATCCTCTCTTGAAATAAATCCTTTCACTGTTCTAAC
ATTCTGATCGATGCAATTGTTTGCAGGTATCAGATGCTCTGTGTTTAAGCCTAGCTGATAACGAGACCAATGGTGACACT
GTCAATCAGAGCTCTTCGTCCTGCTGCAGCTCAGAAGAAGATTCGATTGCCGCATCTGAGGAATCCTTTGTTCCGAACCA
GGGTGACAATTCAAGAGGTTGCAGGCGGCCTTCGAAGAATTTGCAGTCTCTTTATGCAAAGGTTAGGACACGGTTATGTT
ACTCTTGTTCTGATCATGGAATACGAATATTTCTGTTCTCTGACGGTATTTGTGATGCTTCTTACAGAGGAGAAGAGAGA
GGATCAACGAGAAATTGAGAGTACTGCAGCACCTGATTCCCAATGGAACCAAAGTAAGCTCTCACTGATTGGTTAGTGAT
TCACTTACTGAATAATGGAGAGTCCATCTAACACGGCAATTTTATGCGTTTCCAGGTTGACATTAGCACAATGTTGGAGG
AAGCAGTCCAGTATGTCAAGTTTCTGCAGCTGCAAATAAAGGTAGTACTTACTTGTTTATGTTCCAGTTAAGCCATTTGT
CATTGCTGAAAAAATGT---------------------------------------------------------------
-----------------------------------------AACACTGAATTCATCGAACCGATACAACAAAAGTTTGCA
TGGACAATTCAGAATGTTTGTGCAGGTGCCACACTACCACCATACTTCCAAAATTCAACATACTCCCTCCGTTCCTAAAT
ATAAGTCTTTTCAGAGATTCCAATATGGACTACATGCGGAGAAAAATGAGTGAATCAACACTCTAAAGTATGTCTA--TA
CATACATCCGTATGTAGTTCATATTGAATCTCTAAAAAGACTTATATTTAGAAACGGAGGGAG------TATATAACATG
TTGGGAGGTTGTTTGGATGTGGGGATATGTTCTTTGGAGCTTCAGATTTGAACAGAATACCAAAACGACCCATAGAACCC
CCCAGTTAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATAAAAGGATTTAAATTTGGCAA
AAGGGGCGAAATTGCTTAATCCTCTGTGCTTTTTTCTATTTGATTTGAAAAGGAGGATACAAGAAATTTATTTCAAACAT
GGAGTATTATTCTGATCTTCCCTTGTTCTGAACAGGTCTTGAGCTCTGACGAGACATGGATGTACGCACCTCTCGCCTAC
AATGGTATGGACATCAGCCTGAGTCTGAGAATTACCGCAGCCCAAGAATGAACTGGTCATAATCCGAAGCCTTGTTGCTG
TCAAGTCAAATTCAGTACATGGTGCATTTGTTCAAGATCTTAACCCTGACTTTGAATTGTTCATTTGCTTCTTGTGACTT
AGAGGAAGGTGTTGCCTTGCCAGATACAGTAAGTAAATATTGTACGTATCAAATAAGTTGGAGCATGCCATATGTAGCAA
GGAAACAATGTACTCCCTCCGTCCGAAAATACTTGTCAACAAAATGGACAAAAAGGGATGTATCTAAAACTAATATACAT
CTAGATGCATCTTCTTTTATTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATCAAATAAGTCTGATTAATGATG
ATGACATTACTTGGCTCAGTGATTTTCTTATCATCGAAGCAAAAACTTTCAAGTCTGATTAATTATAAACATTAAAATAA
GGTATGCATTGCCAGTTTTTGTCATATAAGAATAGATCCTGAAAACAAATAAATAATTAAAATCTCCAAACTACTTTGAC
AAAGAGAGATTTAGCACCTTGTGGCTCTCATGGTCCATTAGGTAGCTCTGGCAGGGATGTAAACCGAGTCCTGCTTATCG
GTCTAACAGTTCAATAAAGTATTTTTTTCCGGGGAAAATGAACTATCAAGCTCACCATTTATTGCGCCATTTACATCCCT
AAGCTCTGGCATCTGATGGTAATTTGGTTTGTTCTGCTCAAAAGCTTTATCTTGGATAGGAAAGATATTGTTCAAAGCCA
GAAAGTGCAACTTGGCAATGCCAAGTGCTTGTAGCACTACAGTAGTGAATCATGAGTTGCCATTTTGTATGCCGCAAAAT
AGGTTGCCAAAGTTGCATCAATTATAGATTGATGAGCTACGTTGCGCGGATACTTCAAAAAGTGCGCGTATCCAGCCGGA
TACTGCCCCGATACTCGGATACTGCCCCGATACTTTTCGATACGTATCCCGTAAGTATCCCTCGATATTTTGATATTAAA
AAAAGAAAATAATGTTTGATACTCCTAGGATACTTCTGCGATACGTTTTGAATACTTGAACCCCTCGTTTGACGTGAAAT
CCCCTCAATAATAAAGGCGCCTTTGAAGATTCCCAACATGGGCGTGAGTTTATGTGAAAACATGTCTGTCAATATTTTTT
ATTCAATTGAAAGGTGAGCAAGAAAGAGTCGATGCATTGATTGAAACAGCAAACCTGGTCAAATCTCACGGCCAATTAAT
AAAAGTGGACTAAGTGCAAGAAAATAAAGGGGTAATCTTATTGAGGTATGCTTTGACCTAGAAGCTCCTTAAATTTTTTT
CTTCATATTTATAATAATTAATATTTAACATCTATATATAAATGTATCCCCGTATCCATGTTTTTAGAGAATTGACGTAT
CGGGCGTATCCCCGTATCGCGTATCCAATACGTATCCAAGTATCCATGTAACGTAGTTGATGAGTACGTGATCCATATGC
TCATGGGTTTTTGCTAGAACTGGTGTAGTTAACTAGTAATATAGGCGTTAATGAAGAATTCTCTATTTCGCTTATCACTA
ATTTCAGTGTGCGTACATGTAGCTTTCACAACAGCTAACAAGATATCTTCTGCTTTACTTGGTGCCCTAAGCTTTATC--
-TAATTGTGATTGAGGTGTCCAACTATTGTGGTTCTTGAGTTGAGCAGCATCTGGCAGGCATTT----------------
----------------------------------
>chr3A_1
TTCTGATTTCTGAATCTAGTTGCCAATCATTCTGCATCTTAATTAATACCAGCTGGAATGCTGACCCTTGCACAAAACGC
GTTTATCATACTTGATAGTTGATACGAATTTAAGCACGTCTTGAGCTGTCCTAATACTCGAAATAAGGGACTTCATTACT
TCATCCAAACTATTTAATATAGCATTCTCATT---AAAAAAAATGTGCTCCTACGTTTTTTGGGTTGGTTTCAGCAGCGG
CAACTGGCAAGGTTGCCATGTAAAAGTGCAAGCACAGGTGACAGTTGAAGTACTCGCAAAATGTGGATCACAGATAGCCT
TCACGCAACAGTATATCACATGATGTAACAAATTTCCCTTGCATATTGAATCAACTGTTGCAAAGTTTTATTCTCACAAA
GAGAAATAAGAAGTTGCAAACTAAGTTGATATTATCTTAATCTACTCTATTCCATTTATGATCTGCGAGCACTTCTCCTC
CATGACTATGTCCACTCCAAATTTTCTTACTCCTGGCCACCCCCTAATCATTTATTAGATATTTTTTGTTTTTGACTAAT
ATCATCTTGTGGAATTTTGCAACTTTATAACTGATCATATGAATCACTTGGTGGCAATTATTGTTGCCATTCTCTCGTAT
TAAACCATGAGCTTATGGTATTATTGTTCTCTTGGCATTCCCTGGAGGCATCAGTATGACATTATTGCCTCTTTAGATTG
CTCAATGGGCAGACGATTCCCAACACAATCTTTCTAGTTTTTGATGTTGAAGATCCTGAGGGTATGGGTCATTCCTCGAA
GAAATAAACTAGTACCCTGCCTAGTTGTCATTCTGCTCTAGTTAAGAGTAGGGTGTAACCTCAGTCAAATATATATCTGA
AAAGATTCTCTGGGAACGTAGAATAAATGTACATGTCCCTACCTGCTCTGTACTCACAAGACAACATTACCACAGTCCTT
GCACTAGA-TTTTAGAAGTTTTAGAAATTGCAGTAGAAGGTTCCGATCGACATTAGCCCAACAGAATGGAGGCGAAGTGC
GCAGCTATCTGGAGCTCTGTCGATGGGAGGAGCGAGGAGTCTGAGATGATTGCTCACCTGCAGTCCATGTTCTGGAGCAA
CAGTGATGCTGCTGTCAACCTGTGCTCTCCAAACACCAGTGACAATTCTTGTGTTACAGCTAGCACAGTGCATAGTAATT
TGTTCCTTCCTCTTGACATGGAGAGCCATGC---CACAACGCCAATGGTGAACACTGGCATGGACCTATGCTTTGATCAC
CGGCATCAGACCGTTACTGGTCACAAGAGGACATCCCATATGGATGAGCAGATCAAGAGAACTAGCAAGAAATCCCGGAC
TGTTCCCTCGGTAAGGCTACGATATTGTGAACGCGAAGTTGTGCATCCTCTCTTGAAATAAATCCTTCGACTGTTCTAAC
ATTCTGATTGATGCAATTGTTTGCAGGTATCAGATGCTCCGTGTTTAAGCCTAGCTGATAACGAGACCAATGGTGACACT
GTCAATCAGAGCTCTTCGTCCTGCTGCAGCTCGGAAGAAGATTTGATTGACGCATCTGAGGAATCCTTTGTTCCGAACCA
GGGTGACAATTCAAGAGGTTGCAAGCGGCCTTCGAAGAATTTGCAGTCTCTTTGTGCAAAGGTTAGGACACGGTTATGTT
ACTCTTGTTCTGATCGTGGAATATGAATATTTCTGTTCTCTGACGGTATTTGTGATGCTTCTTACAGAGGAGAAGAGAGA
GGATCAACGAGAAATTGAGAGAACTGCAGAACCTGATTCCCAATGGAACCAAAGTAAGCTCTCACTTATTGGTTAGTGAT
TCACTTACTGAATAATGGAGAGTCCATCTAACACAGCAATTTTATGCGTTTCCAGGTTGACATTAGCACAATGTTGGAGG
AAGCAGTCCAGTATGTCAAGTTTCTGCAGCTGCAAATAAAGGTAGTAAGTACTTGTTTATGTTCCAGTTAAGCCATTCGC
CATTCCTGAAAAAATGTACTTCCCCTGTAAAGAAATATAAGAGCGTTTAGAACACTAAAGTAGTGTTCTAAACACCTAAA
GTAGTGTTCTAAACACTCATATATTTCTTTACGGAGGGAGTAACACAGAATTCATCGAACCGTTACAACAAAAGTTTGCA
TGGACAATTCAGAATGTTTGTGCAGGTGCCACACTACCACCGTACTTCCAAAATTCAACATACTCCCTCCGTTCCTAAAT
ATAAGTCTTTTTAGAGATTCCAATATGGACTACGTACGGAGAAAAATGAGTGAATCAACACTCTAAAGTATGTCTATATA
CATACAGCCGTATGTAGTTCATATTGAATCTCTAGAAAGACTTATATTTAGAAACGGAGGGAG------TATATAACACG
TTGGGAGGTTGTTTGGATGTGGGGATATGTTCTTTGGAGCTTCAGATTTGAACAGAATACCAAAATGATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAAAGGATTTCAATTTGGCAA
AACGGGGGAAATTGCTTAATCCTCTGTGCTTTTTTCTATTTGATTTGAAAAGGAGGATACAAGAAATTTATTTCAAACAT
GGAGTATTATTCTGATATTCCCTTGTTCTGAACAGGTCTTGAGCTCTGACGAGACATGGATGTACGCACCTCTCGCCTAC
AATGGTATGGACATCAGCCTGAGTCTGAGAATTACCACAGCCCAAGAATGAACTGGTCATAATCCGAAGCCTTGTTGCTG
TCAAGTCAAATTCAGTACATGGTGCATTTGTTCAAGATCTTAACCCTGACTTTGAATTGTTCATTTGCTTCTTGTGACTT
AGAGGGAGGTGTTGCCTTGCCAGATACAGTAAGTAAATATTGTACGTATCAAATAAGTTGGAGCATGCCATATGTAGTAA
GGAAACAAT-----------------------------------------------------------------------
------------------------------------------------------GTATCAAATAAGTCTGATTAATGATG
ATGACATTTCTTGGCTCAGTGATTTTCTTATCATCGAAGCAAAGACTTTCAAGTCTGATTAATTATAAACATTAAAATAA
GTTATGCATTGCCAGTTTTTGGCATATAAGAATAGATCCTGAAAACATATAAATAATTAAAATCTACAAAGTACTTTGAC
AAAGAGAGATTTAGCACCTTGTGGCTCTCATGTTCCATTAGGTAGCTCTGGTAGGGATGTAAACCGAGTCCTGCTTATCG
GTCTAACAGTTCAATAAAGTATTTT-TTCCGGGAAAAATGAACTATCAAGCTCACCATTTATTGCGGCATTTACATCCCT
AAGCTCTGGCATCTGATAGTAATTTGGTTTGTGCTGCTCAAAAGCTTTATCTTGGATAGGAAAGATATTGTTCAAAGCCA
GAAAGTGCAACTTGGCAATGCCAAGTGCTTGTAGCACTACAGTAGTGGATCATGAGTTGCCATTTTGTATGCCGCAAAAT
AGGTTGCCAAAGTTGCATCAATAATAGATTGAT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTACGTGATCCATATGC
TCATGGGTTTTTGCTAGAACTGGTGTAATTAACAAGTAATATAGGCATTAATGAAGAATCCTCTATTTCGCTAATCACTA
ATTTCAGTGTGCATACATGTAGCTTTCACAATAGCTAACAAGATATCTTCTGCTTTACTTGGTGCCCTAAGCTTTATC--
-TAATTGTGATTGAGGTGTCCAACTATTGTGGTTCTTGAGTTGAGCGGCATCTGGCAGGCATTTAACACTGTTGAATATA
TGTATAGGCGATCATCGCCTGCATGTATGGTTAG
>SNPs
----------------------------S--------------------------------S------------------
------------------------------S-------------------------------------------------
--------------------------------SSS--------S------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------S-------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------------S--------------------------------------------------------------
-------------------------S----------------------------------------------S-------
------------------------------SSS----------------S---------------------S--------
--------------------------------------------------------------------------------
S------------------------S----------S-------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------S-------------------S-------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S---------S---------------------------------------
----------------SS--------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------S-----------------------------------------------------------------------
----------------------------------------------S---------S-----------------------
--------------------------------------------S------------------------S--------S-
--------------------------------------------------------------S-----------------
-------------------------------------------------------S-------SSSSSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------S-------------------------------
----------------------------S---------------------------------------------------
----------------------------------------S---------------------------------------
----------S---------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-----------------------------S----------------------------------------------
------------------------------------------------------------------------------SS
S-------------------------------------------------------------------------------
---------S-------S----------------
>forward_1017
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGAAGGTTCCGATCGACATTAGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_3069
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CGAACAGGTCTTGAGCTCTGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_2205
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GTGCCACACTACCACCGTAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_3745
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TGAGTCCTGCTTATCG
GTCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
