>input_sequence_47534
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-------------------------------------------ACACTCCCACTCACAGTCACACTACACAGGCAGTAGA
GCAAGATAGCTAG--------CTCAACCTCGGTAAGGTAGGATAGGAATAGGATCAATGAAGCCCAGCAGGGCAGCAATG
TTGGCCATGGTAGGCCTGGTTGCCGCAGTGCTGTCCCGGGCGGCCTTGTCCACGGCGGCGCCATCGTTGATCTCTATGCC
CAACGCCGACGGCCTTTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGCGGCAGATGGTGCACGACGCCGTGGAGG
AAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCATGACTGCTTCCCACAGGTACGCAAC
CCTAGCTACCTTTTATTACTTGTTACCTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTGTTGTGCGG
TTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCCTTTTTGTCGCTAAGGTAAAAAAA
---AGGTTGATTTCAGGAGGATGCTGATTATGTCCAGACATACGATTTTGCTAAA-------------------------
----------------------CAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTTGTTGCACA
TTTAGAGAGTGTATTTA---GACATAATAAAATCTCTGTCAACTTTGATGGACGGATCCACGGATTTATGGATATGTAAC
CACAAACACTATGCATGCAGGGCTGTGATGCGTCGCTTCTACTGTTTGACAAGTTCTGGAGCGAGCTGAACATGCCTCAG
AACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCATTAAGGTTCAAGACGCCTGCGGGCCCACTGT
CTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCCGTGATGCACGTCGAGGTGCCAGGCTATGAGGTGCCGCTCG
GTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACGCCACCCAGCTC
ATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGGAGGTCAAG
CTGCGGCAGCTTCAAGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAAGGCACCTGCGCCAGAAACCCTA
ACCATCTGCAGGACCTGGACGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGGGGAAGGGG
GTGCTCAACTCCGACATGGCCCTCACACATGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCGCAGGACCAAGGGTG
GTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCACATTTGCCGAGTGAGTTCGGAAACAATGGTGAGATCCGCA
AGTACAGCTGCTTCTGGGCCAACTTGCATGGCCCGAAGGGGCCTACTGCTGATCTCGCGGCATCAGCTTGAGATCCCATC
ATATGTCGTTAACGGCCTTCCATGCGTGCATGAAATAAGAGCGAGCTAGCTTAGCTAGAATTCTTGTCTGGCTTTTATAT
CTCCATTTCAATAAA-----------------------------------------------------------------
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>chr2D_1_TraesCS2D01G584000
ATTTCGTTGAATTGATTTATCAAGGTGATACAACCGCATCTAAAGAATGCCTGGCCTCTGCATAACGTGATGCACACAGC
CAACAAGTCCATACGACCAAAAAGTAAAAATAGTTTTGCAGCAAAATTAAATCAATCCAGCCTAGGGTGGGGAAGATCCT
ATACGGAGATTACACCGCCATCCTTGGAGGGAGAAAACCTCCCTGGTCGTACGCTCCAGCCGTGTAGACGCCATCATAAA
AATGTCTCTGTCCTCCGACTTCTGCAAGATAGACCAAGTATGGAGCCATCGCGTACATGCATGAATAACCTGCAAAGGAG
AAAAAAACACATTTATTTTTAAAACCAAATCATTTCTGGTTAGCCACATTACCCAGCATAAGGCAGCCGCCTGCACAAGA
ATATGTGCAGAAAATTGTTGCACGGCGTTGAAGTTGCCCTTACACCTTAAAATAAAATATCGTATGTGCAAATATCTGTG
CTTAGAAAAATATCTGAGCTTAGATCCAATATAAGTGGTACCTTAGCCCTTTTTTTAGGGGTAAGGGGTACCTTAGCTGG
GTGTACACCGATTGTCGACAGAGGCCTCGTGGGCTTACGGAATACTAGAATTAGTTGGTCATCAAGGGG-CATGTGAGGG
CGCATCGTCGATCGATCCGTGCACGCCGCGCGCGCATAGCTTGCCACGACGATGCGATCCATTATCGACCAATGTGTTAA
CAATTCTGAATGCATGTGGAATCATGCGAGAGTAGAAAACTGGCAGCAATTTTTTTTCCTTTTCTTCAAGATTAGCTTAT
GCATACA--TGATCACAAACTCACAAATACATTTCGCGATAGCTATTGTAATCTGGAACTCGGGGGTACGTGAGTCTTTT
CGCCCCTATCACCATATTTTTTATTGACATAAGTGATGATCCATTGTGTTCACCAGCTAGCCTTGATCGGCATAAGCTAT
GTGCTTGTGCTATAAATAAACGACTCTTGGACGTGAGGAAGGCACACTCCCACTCACAGTCACACTACACAGGCAGTAGA
GCAAGATAGCTAG--------CTCAACCTCGGTAAGGTAGGATAGGAATAGGATCAATGAAGCCCAGCAGGGCAGCAATG
TTGGCCATGGTAGGCCTGGTTGCCGCAGTGCTGTCCCGGGCGGCCTTGTCCACGGCGGCGCCATCGTTGATCTCTATGCC
CAACGCCGACGGCCTTTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGCGGCAGATGGTGCACGACGCCGTGGAGG
AAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCATGACTGCTTCCCACAGGTACGCAAC
CCTAGCTACCTTTTATTACTTGTTACCTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTGTTGTGCGG
TTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCCTTTTTGTCGCTAAGGTAAAAAAA
---AGGTTGATTTCAGGAGGATGCTGATTATGTCCAGACATACGATTTTGCTAAA-------------------------
----------------------CAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTTGTTGCACA
TTTAGAGAGTGTATTTA---GACATAATAAAATCTCTGTCAACTTTGATGGACGGATCCACGGATTTATGGATATGTAAC
CACAAACACTATGCATGCAGGGCTGTGATGCGTCGCTTCTACTGTTTGACAAGTTCTGGAGCGAGCTGAACATGCCTCAG
AACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCATTAAGGTTCAAGACGCCTGCGGGCCCACTGT
CTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCCGTGATGCACGTCGAGGTGCCAGGCTATGAGGTGCCGCTCG
GTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACGCCACCCAGCTC
ATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGGAGGTCAAG
CTGCGGCAGCTTCAAGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAAGGCACCTGCGCCAGAAACCCTA
ACCATCTGCAGGACCTGGACGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGGGGAAGGGG
GTGCTCAACTCCGACATGGCCCTCACACATGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCGCAGGACCAAGGGTG
GTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCACATTTGCCGAGTGAGTTCGGAAACAATGGTGAGATCCGCA
AGTACAGCTGCTTCTGGGCCAACTTGCATGGCCCGAAGGGGCCTACTGCTGATCTCGCGGCATCAGCTTGAGATCCCATC
ATATGTCGTTAACGGCCTTCCATGCGTGCATGAAATAAGAGCGAGCTAGCTTAGCTAGAATTCTTGTCTGGCTTTTATAT
CTCCATTTCAATAAATCTATGTTTTCCTATGGACTATACTTCGGTTTGCGAAATAATGGTAATAAAAACTACGCAATATG
TTTGGATCTTTTCGGTTTGGTTGTCAAGCTGTCGATGATTCTGTTGTTCCTTTATCAGAAGATAGTGCAACCAAGCTATT
CCTAGCCGCATTGGAAAATATATATATGTTCGGATATACACCCTAAAAATGTAATTTCCAGCTCAACAGAGATTTCCAAT
CCAGCCAAAAATCCACTGCCGCCAGTGCACATCCATGCCCTTTGTCTGAAGTCGTTGTCCACCGATTGTGTATCCGGAGC
AACACTGCTAATGCTGCATCGGCCTCAATACATGCTGCACCAAGATTCAGGAATAATGGTCCAGAGTACCATATATGCCG
GCGAGGCGGGCCGCACACCACCGTCTCCCCGACATCACTAGGCAAACCTCCCCGCCCCCACACTGCCTCCTGGCCTTCAA
GCCGCATGCTTGCCACCGCAACCACCGGAGATGGGAAAGCACTTCCTTCCCCCGCGGCCGCTAGGGATGGGGACCTAGAT
CCAGCGGCCATCCACCCGGGAACAGCCACAATGGCCTGCACGAGCCACCAGTCAGCCATCACGGGCATCTACACTGCAAC
CTTTGCACCGTAGACACAACATCCCACGAAAGCCACATGTCAGCCAGCACGGGCCTCCACACGGCAACCTTCGCACCGCA
TTCACGAAAGGAACAACACCACCGCGCCACCTTCCTGGAGTCAGCATGGACTTTACCGGCACACTCTCCGGCAGCGACGA
AGCATAGGGGACAGGAGAGAAGGCCCTATAGGCGGCATCTAGGGTTCCCGTGCCACCAAGGAGAGCGCCCGACCTTAAGT
TAATAAAGCCACAAACAGGTAACAGTACAAAGTTCAAACAGGGACATAGTAGGGTATCCACAAATTAAATACAAAGAGGC
TCAAATGAGGAGAAAAATTCTAGGGGCAAAGCAAAATAAAGACTATTGTGGTGCG
>chr2A_333
TTATATTAAAAACTGC----------------------------------------------------------------
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----------------------------ATCATTTCTGATAAGCCATAATGCCCAGCCTAAGGCAGCCACCTCCATAAGA
ATATGTGCAGAAAATTGTTGCACAGTGTTGAAGTTGCCCTTGCACCTTAAAATAAAATATCGGATGAG------------
------AAAATATCTCAGCTTAGATATAAGATATG-GGTACCTTAGCTTTTTTTAGGAGCAT--GGGGTACCTTAGCTGG
GTGTACACCGTTTGTCGACAGAGGCCTTGTGGGCTTACGGAATCCTAGAATTAGTTAGTCTTCAAGGGGTCATGTGAGGG
CGCATCGTCGATTGATCCATGCACGCCACGCGCGCATAGCTTGCCACGACGATGCGATCCATTATCGACCAATGTGTTAA
CAATTCTGAATGCATGTGGAATCATGCGAGAGTAGAAAACTAGCAGCAATC-TTTTTCTTTTTCATCAAGATTAGCTTCC
GCATACATGTGATCACAAACTCACAAATACATTTCGCGATTGCTATTGTAATCTGGAACTCGGGGGTACGTGAGTCTTTT
CGCCCCTATCACCACATTTTTTATAG--ATAAGTGATGATCCATTATGTTCACCAGCTAGCCTTGATCGGCATAAGCTAC
GTGCTTGTGCTATAAATAAACCAGTCTTGGACGTGAGGAAGGCACACTCCCACTCATAGTCACACTGCACAGGCAGTAGA
GCAAGATAGCTAGTTCAAGTGCTCAACCTCACTAAGGTAGGATAGGAATAGGATCAATGAAGCCCAGCAGGGCAGCAATG
TTGGCCATGGTAGGCCTAGTGGCCGCGGTGCTGTCCCCCGCGGCCTTGTCCACGGCGGCGCCGTCGTTGATCTCTTTGCC
CAACTCCGACAGCCCCTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGTGGCAGATGGTGCACGACGCCGTGGAGG
AAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCACGACTGCTTCCCACAGGTACGCAAC
CCTAGCTACCTCTTATTACTTGTTACTTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTGTTGTGCGG
TTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCGTTTTTGTCCCTAAGGTAAAAAAA
AAGAGGTTGATTTCAGGAGGATCCTGATTATGTCCAGACATACGATTTTGCTAATCCCAAGATAACTAGCTAGAACTACT
TTATGTCCAAGTTGATTTATATCAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTTGTTGGACA
TTTAGAGAGTGTATTTAGTAGACATAATAAAATCTCAGTCAACTTTGATGGACGGATCCATGGATTTATGGATTTGTAAC
CACAAATACTATGTATGCAGGGCTGTGATGCGTCGCTTCTACTGTCTGACAAGTTCTGGAGCGAGCTGAACATGCCTCAG
AACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCGTCAAGGTTCAAGATACCTGCGGGCCCACTGT
CTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCTGTGATGCACTTCGAGGTGCCAGGCTACGAGGTGCCGCTTG
GTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACACCACCCAGCTC
ATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGGAGGTCAAG
CTGCGGCAGCTTCAGGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAGGGCACCTGCGCCAGAAACCCTA
ACCACCTACAGGACCTGGATGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGGGGAAGGGG
GTTCTCAACTCCGACATGGCCCTCACACGCGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCACAGGACCAAGGGTG
GTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCGCATTTGCCGAGTGAGTTCGGAAGGAACGGCGAGATCCGCA
AGTACAGCTGCTCCTGGGCTAACTTGCATGGCCCGAAGGGGCCTACTGCTGACCTTGCGGCATCAGCTTGAGATCCCATC
ATATGTCGTTAAGGGCCTTCCATGCGTGCATGAAATAAGATCTAGCTAGAATCTTC---------GTCTGGCTTTTATGT
CTCCATTTCAATAAATCTATGTT---------------------------------------------------------
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>SNPs
S-S-SS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-S-----S-S-S------S----------S---S--S----
-----------------------S-S---------------S--------------------S---S-SSSSSSSSSSSS
SSSSSS---------S---------SS--S---S-S-----------SS-----SSSS-SS-SS----------------
----------S----------------S---------------S------------S---S-------------------
------------S-----S--------S----------------------------------------------------
-----------------------------------------S--------SS------S-----S-------------SS
----------------------------------------S---------------------------------------
--------------S---------S-SS-----------------S---------------------------------S
---------------------S-S--------------------------------S---------S-------------
------------------------------SS------------------------------------------------
-----------------S--S-----S----------SS-----------------------S------------S----
----S-----S---SS------------------------------------S---------------------------
-------------------------------------------------------S------------------------
-----------S--------------S-----------------------------------------------------
--------------------------------------------------------S--------S--------------
----------------------S-------------------------------S-------------------------
----------------------------------------------------------------------------S---
------------------------------------S-----------------------S------------S------
------S------S-------------------------------S----------------------------------
------------------------------------------------S-S-----------SS----------------
---------------------------------------S---------S----------------S-----------S-
--------------------------------------------------------------------S-----------
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--------------S------------------------------------------S----------------------
----S--S-----------S------------------------------------------------------------
--S-------------------------SS-----------------------------------S--------------
---------------------------------------S----------------------SS--S--S----------
------------S------S--------------------------------S--S------------------------
------------S---------------------------S-S------SS-SSSSSSSSSSSSS-------------S-
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_238
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----------------------------------------------------------GCCGTGTAGACGCCATCATA--
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>reverse_1891
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--------------------------------------------------TAAGGTTCAAGACGCCTGCG----------
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>forward_1196
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--------------------------------------------------------GGCGCCATCGTTGATCTCTA----
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>reverse_2925
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--------------------------------------------TCTGAAGTCGTTGTCCACCG----------------
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