>input_sequence_47533
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------------------------------------------------ATGGGGAGCTCCTCCGCGTGCGACGGGACTCT
GTCACTCGACGAGTTCAACGCCTCAGCGAAGGCCCTGGTCACCAAGTGGAGGGGGATTGATGTCGACG---CTCTTCCCG
ACTGGGAGTGGAGGCCTTGCCGCAAGATGGGGGTGCCATCTGAGGTCAA----ATGCTCAACAGACTTGACCTCCTCATC
TCTTTGCTATCTCTTCTGTTATTTTTTATGTCACTGTGCAAGATTTAGGACTGTGAATTTGCGATAACCCATGGATTGGC
TTGTTTTCTGCAGACAGAGGGGTTTGTAGCCCTCGAAGGAGTCTATCGAATTCGTGCAGGAAGCCAGGTGGGCGGGCTGT
TATTTTCTTTGGCTATCTGAT---AGTA-----ATATGAAGTTGCGCGTTTTAGTAATTC----ACTGAATGTCTCCTTC
TGGAACAGATTGAGGAGAGCAGTGACGACCCTGTCCCTGATGATGATGTTGTAGGGCATGATACCTCGGTAAGTTTTCAG
TGGGTATTTCTATTCCAGTATCATATGTTTCTGTTACCAGCATGTTGCTATATTACATTGCTCTGCACCCCAGCTGTTTC
ATATGTTCAG--TATATATCTATCCTATAAAAGTGTAGCAGTTTCATCAAATCATTAAATAGCCGCGTAA-ATCAGCAAT
TTGAATTGACCATACCCCAGAGACTCAGTGACTTGCATCGCAAATCTATTATGAGCACACATGAGA-AGAAATGTAAATA
TCTTGTAGCAACCTATAGTGATGCACGATGCCAAGTTCCAAATTTAGTTCTTTCATTTGTGCCTGTGATTTTGGGGTGGT
AAAGCACGGAATAGAAAGGATCACATTGGCCTCGCATCATTTACTAGCTACTAGTACTAGT-------------------
----------TCTCAGTTTTTTCTGCAAGGGCTGAGATAACTGCGATCCT--TTTCGCGATAAACTTTCAATTTCTTATA
AAAGCAAAAATCTTCAGTTC------------------------------------------------------------
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------------------------CTAATTTAAATATACGCCAGCCATGATTTCTTTCTCTTGGCAGGTTCAGAGCTCTA
GGGATAATGTTCATCTTTATGATTTCCATATTGTCTACAGCTTTTCTTACAAGGTTCCGGTGCTATACTTTCAAGGTCTT
CAGGCTGGTATGCACATTTCAGAACATTACTG--GATATTTACTTCCTCTGCT-TCCTTTTTGATAGCCAACGTCTGCAA
CTTGTCCTTAGGTGGGCAGCTGCTAACTTTAGATGAGATAAAAAAGGATCTTCCTCCTCATTCACTTCAGTTGTTAAACG
AATCAAAGTGGACATTTATTACTCGAGAGGTATGGACTGTTTGTAGCCGATCATTGATAATGATATGTAATACACATACA
TGCTTTCTTGTTTACTAATCAGTTGAAAGCTTAGACTCATTAAAAATGATTGAGCTGTTCTTGCACTCCTACAGGAGCAT
CCCCACCTAAGTAGGCCATGGTTCACCCTGCATCCATGTGGAACCAGTGACTGGATGAAGTTGCTTCTTCATAAACTGGG
AGATAAAGATCGATCTCTGCAATACTTGCCAGCATGGTTATCTGTGGCCGGTCAGGCAGTAGGATTGAAAATCCCGCTTA
AGCTTTATTGCAGTTCATAG------------------------------------------------------------
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-----------------
>chr2D_1_TraesCS2D01G351500
CCGGAGAGCTCGCTGCATGGGCTGGCACGGTAGATCAGATGAACCTTGGAAAGAGAGAATCGATGTAATACGAGGTACTT
GAGGGGCCGTTTCGTAAACCTTCAC----CTCTCCGGGACTCCCTGCCCTGCGCCGGGTATCCAGTTTATCAGGGTTTCT
TTTAGAAATGTGCAGTGATACACAATTTCACTCTTCCGCCGGAGTCGGAGGCACGTCGCCGACGAGCCGACGCTGACGCA
CCTCCCACCTCGGCCACGCCGCTGCCGCCCCAGCCGTTTCCTAAGAAAAATCTTGTAGAAATTTTATAAGACATAATTTT
TATAAAAAAAATTCCTTTAGAGCTCTTTGATTGGTAGAATGAAATCCTATTCTTATGAAAGAATTCTTTCTATCCTTCAC
ATTTCATAAAAAATAAACATTAGCCTAGACTCAATAAAACAAATCCTATAATGTGAATCGAAGGGCATCTTCTTTCTTAT
TCCTACTCATAGAATTTGAGATACATGTCATTTTATTTTTTATAATTTTTCTATTCCTATGATTTTCCTATGCCTAAACC
TTCACCTCTCCGGGACTCCCTGCCCGGCGCCGGGTATCCAGTTTTATCAGGGTTTCTTTTAGAAATGTGCAGTGATACAC
AATTTCACTCTACCGCCGGAGTCGGAGGCACGTCGCCGACGAGCCGACGTTGACGCACCTCCCACCTCTGCGGCGACGCC
GCCGCCTCCGCCCCAGCCGCGCGCGCCTCCTATCCAGCAACGGCCCCGCGTTCTCCGTCCCCGCCCGCCGCGCAGACCGC
CACCAGCCCACCACTAGTCCAATTCGAGAAGGACTAGGTTTGTTTCCGAGCACAGCACCGCAGCCCGCGGGACTCCGGAT
CGGCGACGGAATCTCGATCGATCGATCGACTGGTTCGGCCGCTGAACTCAACTCGTCTCCAAATAGAGCCAGGG---GGG
-ATTCTTGACCGCCTCGTTGGTCGTTGCTTACCGCGCTCGTCTTCGCAATGGGGAGCTCCTCCGCGTGCGACGGGACTCT
GTCACTCGACGAGTTCAACGCCTCAGCGAAGGCCCTGGTCACCAAGTGGAGGGGGATTGATGTCGACG---CTCTTCCCG
ACTGGGAGTGGAGGCCTTGCCGCAAGATGGGGGTGCCATCTGAGGTCAA----ATGCTCAACAGACTTGACCTCCTCATC
TCTTTGCTATCTCTTCTGTTATTTTTTATGTCACTGTGCAAGATTTAGGACTGTGAATTTGCGATAACCCATGGATTGGC
TTGTTTTCTGCAGACAGAGGGGTTTGTAGCCCTCGAAGGAGTCTATCGAATTCGTGCAGGAAGCCAGGTGGGCGGGCTGT
TATTTTCTTTGGCTATCTGAT---AGTA-----ATATGAAGTTGCGCGTTTTAGTAATTC----ACTGAATGTCTCCTTC
TGGAACAGATTGAGGAGAGCAGTGACGACCCTGTCCCTGATGATGATGTTGTAGGGCATGATACCTCGGTAAGTTTTCAG
TGGGTATTTCTATTCCAGTATCATATGTTTCTGTTACCAGCATGTTGCTATATTACATTGCTCTGCACCCCAGCTGTTTC
ATATGTTCAG--TATATATCTATCCTATAAAAGTGTAGCAGTTTCATCAAATCATTAAATAGCCGCGTAA-ATCAGCAAT
TTGAATTGACCATACCCCAGAGACTCAGTGACTTGCATCGCAAATCTATTATGAGCACACATGAGA-AGAAATGTAAATA
TCTTGTAGCAACCTATAGTGATGCACGATGCCAAGTTCCAAATTTAGTTCTTTCATTTGTGCCTGTGATTTTGGGGTGGT
AAAGCACGGAATAGAAAGGATCACATTGGCCTCGCATCATTTACTAGCTACTAGTACTAGT-------------------
----------TCTCAGTTTTTTCTGCAAGGGCTGAGATAACTGCGATCCT--TTTCGCGATAAACTTTCAATTTCTTATA
AAAGCAAAAATCTTCAGTTC------------------------------------------------------------
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------------------------CTAATTTAAATATACGCCAGCCATGATTTCTTTCTCTTGGCAGGTTCAGAGCTCTA
GGGATAATGTTCATCTTTATGATTTCCATATTGTCTACAGCTTTTCTTACAAGGTTCCGGTGCTATACTTTCAAGGTCTT
CAGGCTGGTATGCACATTTCAGAACATTACTG--GATATTTACTTCCTCTGCT-TCCTTTTTGATAGCCAACGTCTGCAA
CTTGTCCTTAGGTGGGCAGCTGCTAACTTTAGATGAGATAAAAAAGGATCTTCCTCCTCATTCACTTCAGTTGTTAAACG
AATCAAAGTGGACATTTATTACTCGAGAGGTATGGACTGTTTGTAGCCGATCATTGATAATGATATGTAATACACATACA
TGCTTTCTTGTTTACTAATCAGTTGAAAGCTTAGACTCATTAAAAATGATTGAGCTGTTCTTGCACTCCTACAGGAGCAT
CCCCACCTAAGTAGGCCATGGTTCACCCTGCATCCATGTGGAACCAGTGACTGGATGAAGTTGCTTCTTCATAAACTGGG
AGATAAAGATCGATCTCTGCAATACTTGCCAGCATGGTTATCTGTGGCCGGTCAGGCAGTAGGATTGAAAATCCCGCTTA
AGCTTTATTGCAGTTCATAGGTTCACTCTTCTCCACTATGTAGTAC--TACTATTTTGGTGAGTAAAATGGGAAGTGTCC
ACCTCTTATTTTGCTTTGCATATGTTCAAACATTTCTCTTGGTAATTTGACCATTTTGCAGT---GTAATAACTAATTTT
ATTGCATATGCACGAATGGCACAGTTGCACATACTGCGGCATAGTTGCAGCTTTAACATGATGATTTATCCTTGGGCATG
TAATTGGTTATTATTCTTATATCCTTTCGTTTCCCAGATTTGTTTAAAGCTACTTGCTTGAAAGAATCATGCAAGCTGAA
TATCATCAGAATTTAGTGAAGATGAAGATATGATGGGCTGCTGATGGAAGTTACCAGTCAGTCAATGCTCGGCTCAGTTA
AGAAATTTGAAGTGAAAAAAATAGGAACATAGTTGAAACAG---------------------------------------
--------------------------------------------------------------------------CAACTC
TCAATTGTTGCGCCGTATTGAGGTTCTTTACTG-----------------------------------------------
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--------------------TGG-ATAGGTGCTGCAGAATGGTATTTTGTCAACCCATTCAAAACCTTGG-AGTTTTGAA
GGCCTGGATGAAACCCATTTGAATCGTTGGAGTTCTCAGGGCTTGGATGGCTCATCTGAACTACTCGTAGAAGCGTCAGG
CTACCTTAATTCATGGAGA---CATGCTTCCCATTCCCAGCAACTCAGTCATCAGTCTTAACCTCACTGCAAATAAGGTC
CACTTGTGCTCCATTATGATATCCTTTTGTTCTACATAGACGATGGAGTGTTCTCATTGCCAGAAAGAAAAGGCC-----
--AAGTAGGTCAACCTGAAATTATGTGGATATGACAATATTCAGCATCTGAGAATGGATTTGATGACTCCATCGTGCAGT
TCCATTCCTACATTAACCAACATGGTCTACGAGGCTAGGAGAAACAGACATGGTGACAACTTGGACTAGCGAGAAGCGGC
GGGGACGAGGGAGACAGGGGAGGAGCCACCCTCCCTCCGAGCGCCGGTATGATGTGGGTGGGTGACCGGTGGTCTGGTTT
TGGGCCGCGGGAAACCG
>chr2A_1
CCGGGGAGCTTGCTGCATGGGCCGGCACGGCAGATCAGATGAACCTTGGAAACAAAGA----ATGTAATACGAGGTTCTT
GAAGGGCCGTTTCGTAAACCTCCACCTCTCTCCCCGGGACTCCG-----TGCGCCGGGTATCCAGTTTATCAGGGTTTCT
TTTAGAAACGTGCAACAGTACACATCTTTACTCTTCCGCCGGAGTCGGAGCCACGTCGCCGACGAGCCATCGCTGACGCA
CCTCCCACCTCGGCGACGCCGCG---------------------------------------------------------
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---------GCCCCAGCCGCGCGCGCCTCCTATCCAGCAACAGCCCCGCGCTCTCCGTCCCCGCCCGCCGCGCAGACCGC
CAGCAGCCCACCACCAGTCCAATTCGAGAAGGACTAGGTCGTC-TCCGAGCACAACACCGCAGCCCGCGGGACTCCGGAT
CGCCGACGAAATCCCGATCGATCCCGCAGCATCTC------------------CGTTTCCAAATAGAGCCAGGG---GGG
GATACTTGACTGCCTCGTTGGTCGTTGCTTGCCGCGCTCGTCTTCGCAATGGGGGGCTCCTCCGTGTGCGACGGGACTCT
GTCTCTCGACGAGTTCAACGCCTCAGCCAAGGCCCTGGTCACCAAGTGGAGGGGGATCGACGTCGACG---CTCTTCCCG
ACTGGGAGTGGAGGCCTTGCTGCAAGATGGGGGTGCCATCTGAGGTCAG----ATGCTCGACAGACTTGACCACCTCATC
TCTGTGTTATCTCTGCTGTTATGTTTTCTGTCAC--TTAGGTTTATG--------------------CCCATGGACTGGC
TTGTTTTCTGCAGACAGAGGGGTTCGTAGCTCTTGAAGGAGTGTACCGAATTCGTGCAGGAGGCCAGGTGGGCGGGCTGT
TTCTTTCTTTGGCTATCTGAT---AGTACTGCAATATGAAGTTG-GCGTTTTAGTAATTTGTTTACTGAATGTTTCCTTC
TGGAACAGGTTGAGGAGAGCAGTGACGACCCTGTCCCTGATGATGG---TGCAGAGCATGATACCTTGGTAAGTTTTCAG
TGGGTATTACTTCTCCACTATCATATGTTTCTGTTGCCAGCATGTTGCTATATTACATTGCTCTGCACCCGAGCCGTTTC
ATATTTTCAGACTATATATTTATCCTGTATAAACAATATAACAGTTTCACC-----AAATACTCTGTGGACGTCCGCAAT
TTGAATTGATCATGCCCCAGAGACTCAGTGACTTGCATCGCAAATCTATTATGAGCACACATGAAAGAGAAATGTAAATA
TCTTGGAGCAACCGATAGTGATGCATGATGCCGTGTTCCAAATTTAGTTCTTTCATTTGTGCCTGTGATTTTGGGGTGGT
AAAGCATGGAATAGAAAGGATCACCTTGGCCTCGCATCATATACTAGCTACTAGTACTAGTATCCCTAAAAAAAAGCTAC
CGGTACTATTTCTCAGTTTTTTCGGCAAGGGCGGAGATAACTGCGATCCTTCTTTCGCGATAAACTTTCAATTTCTTATA
AAAGCAAAAATCTTGAGTTCCTAATTTT----------------------------------------------------
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--------------------------------AATATGCGCCAGCCATGATTTCTTTCTCTTTGCAGGTTCAGAGCTCTA
GGGATAATGTTCATCTTTATGATTTCCATATTGTCTACAGCTTTTCTTACAAGGTTCCGGTGCTATACTTTCAAGGCCTT
CAGGCTGGTATGCACATTTCAGAACATTACTGTGGATATTTACTTCCTCTATTCTCCTTTTTGATAGCCAACATCTGCAA
CTTGTCCTTAGGTGGGCAGCTACTAACTTTAGATGAGATAAAAAAGGATCTTCCTCCTCACTCACTTCAGTTGTTAAACA
AATCAAAGTGGACATTTATTACTCGAGAGGTATGGACTGTTTGTAACCGATTCTTGATAATGATATGTAATACACATACA
TGCTTTCTTGTTTACTAATTAGTTGAAAGCTTAGACTCACTAAAAATGAATGAGCGGTTCTTGCACTCCTACAGGAGCAT
CCCCACCTAAGTAGGCCATGGTTCACCCTGCATCCATGTGGAACCAGTGACTGGATGAAGTTGCTTCTTCATAAACTGGG
AGATAAGGATCGATCTCTGCAATACTTGCCAGCATGGTTATCTGTGGCCGGTCAGGCAGTAGGATTGAAAATCCCGCTTA
AGCTTTATTGCAGTTCATAGGTTCACTCTTCTCCAGTATGTAGTACAGTACTATTTGGGTGAGTGAAATGGGAAGTGTCC
ACCTCTTATTTTGCTGTGTATATGTTCAAACATTTCTCTTGGTAATTTGACCATTTTGCAGTGTAGTAATAACTAATTTT
ATTGCATATGCAT-------GCAGTTGCACGTACTGCGGCATAGTTGCAGGTTCAACATGATGATCTATCCTTGGGCATG
TAATTGATTATTATTCTTACATCCTTTCGTTTCCCAGATTTGTTTAAAGCTACTTGCTTGAAAGAATCATGCAAGCTGAA
TATCATCAGAATTTAGTGAAAATGATAATATGATGGGCTGCTGATGGAAGTTACCAGTCGGTCAATGCCCGGCCCAGTTA
TGAAATTTGAAGTGAAAAAAATAGGAACATAGTTGAAACAACAACTCTGAAAG---------------------------
-----------------------------------------------------------------TTGAAACAAGAACTC
TCAATTGTTGCGCCATATTGAGGTTCTTTACTGCGAAATCACTAATTAAGAAGTACTCGTTGCAAAGAACACTCACTTGT
CGCAACCTGATAGTTTTCCCTTTTTTCATAGATTCGTTTATTCAAAATATTTTATCTTTTAAACCGTGTATCCAAATCTC
GAACCGTTTTCACTATTGGATTCCTCGCGTCGAGATCTTCAAAACTAGATCTCATGTTGATAGGTTTTGACGAACTTTTT
CTTTTTACGAAAAAAACCGGACGAAAAAACCGAGTGAAAAAACCGAAACCGGAGCACGGTTTTTTTCCTTTCCGAAAGAG
GCACGTCCGTGCCTCTCGTGAAAGCAAAACCGTGACTCTCGTGGAAGGAAAAAAAAAAACAGAAAACGTGTTTTTTTCCG
TTTACGAGAGGCACGGCCGTGACTCTCACGAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCGCGAAAG
AAAAAAAAACAGAAAACGCATATTTTTTTCCCTTTCTGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCCC
TCGCGGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCGTGACTCTCGCGAAAGGAAAAAAAAACTGAAAACGCGTTTTGTTTTTT
CCGTTACCGAGAGGCACGGCCCTGCCTCTCGTGAAAGCAAAATCGTGACTCTCGCGAAAAAAAAATAGAAAACACGTTTT
TTTCGTTTCCGAAAGGCACGGTTGTGACTCTCCCGGAAAAAAACCGTGACTTTCGCGAAAGAAAGAAAAAAGAAAATGTG
TTTTTTTCGTGTAAAATTTTTTTTTTGATTTTTTTTATCGAAGAGCTAAGGAAGACCGGGGGAAAACCAAAACGTCAAAA
AAACCCGAGAACAACTTTTAAAAAACCGAAAACACGTGTGGAAAAATAAAATAAAAACAAAATCCGGAGGGAGCGTCCAG
AACGCGACACGTGGCAAATGGCTGAAAGCGCGCCAAGTGGAGTTGATCGTTGCGAGGCTCCCGAAGGAGCGCTCGTTAAC
TGGTTGCTCCCTCTTTACTGTGGCATAGGTGCTGTAGAATGGTATTTTATCAACCCATTCAAAACCTTGGGAGTTTTCGA
GGCTTGGATGAAACCTATTTGAATCGTTGGAGTTCTCAGGGCTTGGATGGCTCATCTGAAC------TAGAAGCGTCAGG
CTACCTTAAATCATGGAGAGAACATGCTTGCCATTCCCAGCAACTCAGTCATCAGTCTTAACCTCACTGCAAATAAGGTA
TAATTGTGCTCCATTATGATATCCTTTTGTTCTACATAGACGATGGAGTGTTTTCATTGCTAGAAAATAGAAAAAGGCTA
AGAAGTAGGTCAACCTGCAATTATGTGGATATGACAATATT---------------------------------------
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>chr2B_930
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-----------------------------------------------------CGTCTCCAAATAGAGCCAGGGAGGGGG
GATTCTTGCCCGCCTTGTTGGTCGTTGCTTACCACGCTCGTCTTCGCAATGGGGGGCTCCTCGGCGTGCGACGGGACTCT
GTCACTCGACGAGTTCAACGCCTCAGCGAAGGCCCTGGTCACCAAGTGGAGGGGGATCGACGTCGACGACGCTCTTCCCG
ACTGGGAGTGGAGGCCTTGCCGCAAGATGGGGGTGCCATCTGAGGTCATATATATGCTCAATTGACTTGACTTCCTCATC
CCTGTGCCATCTCTGTTGTTATTTTTCCTGTCAC--TGCAAGATTTAGGACTGCGAATTTGCGATAACCCATGGGTTGGC
TTGTTTTCTGCAGACGGAGGGGTTCGTAGCCCTGGAAGGAGTGTACCGCATTGGCGCAGGAGGCCAGGTGGGCGGGCAGT
TTCTTTCTT-GGCTATCTGATATGAGTA-----ATATGAAGTTGCGCGTTTTAGTAATTTATTTACTGAATGTTTCCTGC
TGGAACAGGTTGAGGGGAGCAGTGACGACCCTGTCCCTGATGATGGTGTAGAGT---ATGATACCTCGGTAAGTTTTCAG
TGGGTATTACTACTCCAGTATCATATGTTCCTGTTACCAGCATGCTGCTATGTTACA----TCTGCACCCAAGCCGTTTC
ATATGTTCAGACTAT----TTATCCTATATAAAAAACACAACGGTTCCACC-----AAATAGCTGTGTAT-GTCCGCAAT
TTGAATCGATCATGCCCTAGAGACTCAGTGACTTGCATCGCAAATCTATTATGAGCACACATGAAAGAGAAACGTAAATA
TCTTGGAGCAACCGATAGTGATGCATGATGCCGAGTTCCAAATTTAGTTCTATCATTTGTGCCTGTGATTTTGGGGTGGT
AATGCATGGAATAGAAAGGATCACCTTGGCGTCACATCGTACACT-----------------------------AGCTAC
CAGTACTAGTTCTCAGTTTTTTCAACAAGGACTGAGATAACTGCGATCCTTCTTTCGCGATAAACTTTCAATTTCTTATA
AAAGAAAAAACCTTGAGTTCCTAATTTTAAGAGTGAAGTGAACTGTAGGTCCTTAAACTATTTCAGGGATGTCACATAGG
TCCTCAAACTATGAAAATCGTCATTTAGGTCCTCGAAGTATAGTAAGTGTGTCATTCAGGTCCAAAATCTCACTAACCCC
CTCTAAATGGCCAGCTGGCATGGTGAACAGTACGAAAAATAAAAAAATATGAACAAAAAATCTGAAAATCTTTGGCATCG
AAGATACCCCTCGTGCGTGAATAGTAAAAATGTTTGTGAACCACAAAAATTCGTGACTTTTAAAGATGTTAGTGAACTTT
ATATTAAAGTCGCAAATAGTTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTT
ATCGTTCACGAACATTTTTTTAAAGTCATGAATATTGTTTCCAAATTCATCGGTCGCGAATTTTTTTTAAACTCACGAAT
AATTTTTAAAGTCGTGAATATTTTTCCCAAATTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAA
TTCATCGTTCGCGAACTTTTTTTAAAGTCGCGAATATTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAA
ATATTTTTCCAAATTCTTCGTTCGCGACTTTTTTTGAATTAATGATATTTTTACTGTTCATGCGCCAGGATCTCTTCGAT
GACAGAGGATCTCAGTTTTTGGATATTTTTTTATATTTATTCTTTGTCGTGTACTGTTCATCACGCACAGGAATTCAGGA
CTGTTTGCCGCGCACTGTTACGGTTACTGTTTACGTGCCAGCTGGCCAGTTAGAGCCTGTCAGGAAGATTTTTGACCTGA
ATGACACAGTTACGGCACTTTGAGGACCTAGATGACGATTTTCATAGTTCGAGGACCTACGTGACATCCCTGAAATAGTT
CAAGGACCTACAGTGCACTTCACTCTAATTTTAATATACGCCAGTCATGATTTCTTTCTCTTTGCAGGTTCAGAGCTCTA
GGGATAATGTTCATCTTTATGATTTCCATATTGTCTACAGCTTTTCTTACAAAGTTCCGGTGCTATACTTTCGAGGTCTT
CAGTCTGGTATGCACATCTCAGAACATTACCG--AATATTTACTTCCTCTGTTCTCCTTTTTGATAGCCAA--------A
CTTGTCCTTAGGTGGGCAGCTACTAACTTTAGATGAGATAAAAAAGGATCTTCCTTCTCATTCGCTTCAGCTGTTAAATG
AATCAAAGTGGACATTTATTACTCGAGAGGTATGGACTGTTTGTAATCTATTCTTGATAATGATATGTAATACACATACA
TGCTTTCTTGTTTACTAATT----------------------------------CGGTTCTTGCACTCCTACAGGAGCAT
CCCCACCTAAGTAGGCCATGGTTCACCCTGCATCCATGTGGAACCAGTGACTGGATGAAGTTGCTTCTTCATAAACCGGG
AGATAAGGATCGATCTCTGCAATACTTGTCAGCATGGTTATCTGTGGCCGGTCAGGCAGTAGGATTGAAAATCCCACTTA
AGCTTTATTGCAGTTCATAGGTTCACTCTTCTCCAGTATGTAGTAT-GTACTATTTTGGTGAGTAAAATGGGAAGTGTCC
ACCTCTTATTTTGCTTTGTATATGTTCAAACA-TTCTCTTGGTAATTTGACCATTTTGCAGTGC---AATAACTAATTTT
ATTGCATATGCACGAATGGCGCAGTTGCACATACTGCAGCATAGTTGCAGCTTTAACATGATGATTTGTCCTTGGGCATG
TAATTGATTATTATTCTTACATCCTTTCGTTTCCCAGATTTGTTTAAAGCTACTTGCTTGAAAGAATCATGCAGGCTGAA
TATCATCAGAATTTAGTGAAAATGAAAATATGACGGGCTGCTGATGGAAGTTACCAGTCAGTCAATGCTCGGCTCAGTTA
TAAAATTTGAAGTGAAAAAAATAGGAACATAGTTGAAACAACAACTCTCAAAGTTAAAACAGACTGTAAATATTGCATTC
TTGGTTGGGAATAAAGAGTTAAGCTGTGGGGTGCTTTACCCTACAGTAACAGGTAAAAAAAGAAGTTGAAACAACAACTC
TCAATTGTTGCGCCGTATTGAGGTTATTTACTG-----------------------------------------------
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--------------------TGGCATAGGTGCTGCAGAATGGTATTTTATCAACCCATTCAAAACCTTGG-AGTTTCCAA
GGCTTGGATGAAACCCATTTGAATCGTTGGAGTTCTCAGGGCTTGGATGGCTCATCTGAAC------TAGAAGCATCAGG
CTACCTTAATTCATGGAGA---AATGCTTCCCATTCCCAGCAACTCAGTCATCAGTCTTAACCTCACTGCAAATAAGGTC
TACTTATGCTCCATTATGATATCCTTTTGTTCTACATAGACGATGGAGTGTTCTCGTTGCCAGAAAGATAGAAAAGGCTA
AGAAGTAGGTCAACCTGAAATTATGTGGATATGACAATATTTAGCATCTGAGAATGTATTTGATGAGTCCATCTTGACAG
TTC-----------------------------------------------------------------------------
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-----------------
>SNPs
----S-----S-----------S-------S---------------------S-S---SSSS--------------S---
--S------------------S----------S----------SSSSSS-------------------------------
--------S-----SSSS------SS--S---------------------S-----------------SS----------
--------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS--------------------------------S--------S-----------------------------
--S-----------S------------------------SSSSS----------S-------------------------
--S-----S----S---------SSS-SS-SSS-SSSSSSSSSSSSSSSSSSS---------------------------
------------------------------------------------------S-------------------------
---------------------------------------------------------S--S-------------------
------------------------------------------------S-------------------------------
---S----------S------------S------SS-----------------S--------------------------
------------------------S--------S--------S--S---------------S------------------
-SS--------------------------------------------------------S-------------S------
--------S------------------------------------S-----S--S-------------------------
--------S---S---------------------------------------------------------S---S-----
-------------------S---------S--SSSSSS--SSSSSS---SSSSSSS---------S-----S--S-----
---------S---S--------------------------------------------------S---------------
-----S-------S-----------S------S-----------------------------------------------
------S-----------------S---------------S---------------------------------------
-----------------------S--------------------------------------------------------
--------------S-----------------------------------------------------------------
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-------------------------------S------------------------------S-----------------
--------------------------------------------------------------------------------
---------------------------------------------------S--------------------S-------
---------------------S----------------------------------------------------------
---------------------------------------------S-----SS---------------------------
-------------------S-------------------S---------S-----S------------------------
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------S-------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------S-------------------------------------------------------------
--------------------S-----------------------------------------------------------
------S------------S------------------------------------------------------------
--------------------S-----S-----------------------------------------------------
S---------------------------------------S---------------------------------------
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------------------------------------------------S----------------------------S--
---S---------------------------------------------------------SSSSSS-------------
--------------------------------------------------------------------------------
S----------------------------------------------------------------------SSSS-----
-----------------------------------------S--------------S---------S------S--SSSS
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_287
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---------------------------CCCCAGCCGTTTCCTAAGAA---------------------------------
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>reverse_1305
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------------------------TGTAGCCCTCGAAGGAGTCT------------------------------------
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>forward_661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ATTTCACTCTACCGCCGGAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_3023
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GGCAGGTTCAGAGCTCTA
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>forward_1098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TCACCAAGTGGAGGGGGATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>reverse_3410
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTGAGCTGTTCTTGCACTCCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------
>forward_1881
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CACATTGGCCTCGCATCATT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------
>reverse_5598
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAA
GGCCTGGATGAAACCCA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
