>input_sequence_47531
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-----------------ATGTCGTCCTCCTCCTTCTCCAAGGCCAGATTCGAGGTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTGTTCCTCTGCTCAACCCTACCTACTTCTTCATCATCATCTCATAGACTCATACATAGATACTCCTCCTGCT
AGATAAAGATAAGATGATAATTCACCAGACCAGATATAGAA----------------------------TCCAATCGAAT
CTGACATCAATTGCAACCTCAATTGCCTTGCTAATAATACAC-------------TACATACATACATACTAGTAATTGC
CCTGCAGCAGCAGCACTAAGTAAGAGGATGGGATGGATTACATCTCCTCTCCTCTCCTCACCTAAACAAACAATTACAAG
TGCTGAT-------------------------------------------------------------------------
-----------------------------------TCTTCTCTTTTGATTTGCTTGGCTTGCCGTGCGTGCAGGGTAAAG
GAGTAGGAGGC---GGCGGAGCC---------GGGAGATCCATATCGCTGGCCGCCTCCAGGGCCAAGCTCGCCGCGGCC
ACCGC------------CAGCGCCAAGAAAGCAGCTGCTACTACAGCTA---------GCGGGCGGGGCAAGGGCAAGGG
CAAGGCCGCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGATATCCCAGAGGAGGTGATT----------CCCTCA
AA-------TTCTTCTTTCA-------------TGTA-------TGCTTTCAGTTCAAGCATCTGATTTGGGAACCATTT
TTGCAAT--CAATTTCTCTTGGCTGGGCTGGCAGAGGGAGCCCCTTCGGATCTTCTACGAATCGCTCTCCAAGCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCTACCAAC--------------CCCATCTC-ACCTCTGCTCTTCTCTGCTC
TGCTCCACCAATTAATCACCACTTACTA---CTTACTAG----TGCTTGCTTGCTTGTCCACAAGTCAAGTTATCCCCAC
CCAGTT------ACTCAGTTACTAGGACTGTT-------CTCATCGATGCATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTA--------GCTTCCCTCCCTCCCTGCAC-----------ACACC-----TAGCTACCTAATTACA
CTA-GTG---GTCTTCACAAACAACTTC--------ACTCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACTTCA-AAAAATGTATCCTCTTCCAAATTTACTAC------------------------------T-----------
--------------------------CCA---------------------------------------------CCAATA
TTTTACTACAGCAACATCATTCAGGCCTGACCTCACGGACGGGCTTACAGAATCACCTACTACTAGTTTTTTACTGCAGC
AA----TATGTTATACCACCACACCATTGCTCTGCAATGTATGTATGTATGTATGT------------G-----------
ATACTTATCTGACAGACACGACATACATAAAACCTCTTC--GCAGGTTAATGGAGCATGGGCTGTTATCTCCGGAGAGAG
CCAAGAAAGCCTATGACAGAAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCGATCAAGTCGTCAAATTCCAAC
ACTGTCAGCAAACACAACAACAAC------------AAACCTGCAGAGACCTGGAAGAAACCGGCACCAGTGGTTTCTTC
TTCTTCCACAGCGCGTCACAACACGGATCATACCGCCGCCAAGGCCAAGAGAAGAGTCGAGTACAGCAGCGA------CG
ACGACGACAAAGAATTCATTGTCAAGCTCAAGAGACCCAATTTCAACTCCAACTCCAACTCCAGTTCCAGGGGTGGCTGA
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-------------------
>chr1D_1_TraesCS1D01G452900
AAAATCCCCCATGAATTTAGTAAAACCGAAGCACTTCTATGCTTTGAAGATTGCAGGCGAACTCATGCTTTGAAGCAACA
AAATTGCACCCAAAAAAAGAGTTTATGACCGTAAAATAGTTGTATCTCATGCAAAACCATCACCAAAACCCCCCGAGTTG
CATGGAGCACATTCATTTCATTTTATAAACAAAAGAAAAACAATGGCGGTCTGATTCTATATATAGGAAAAAATCATACC
ATGTGTGTGGGCACCTCGTGTCCTTTGTCCATGCAACTTCAGCCTCCCTACCCTGCATGTTGTCAAAAATGCTGCCTATC
CCCCTGCATATGACTGTCAACCTCCTGGCATCCCTGCACATCGACACCGCCGCTGCACGGGATGACCTAGTAGATCCGCA
TCCCTAACTCCACCCCCTCACCTTCCTCAGACCAAAATCAGTGTTAGAAATGACCCCTCCAAGTCTCGCTCCTCCGGAAT
CGGGTTTGGGCAAAATGCAACTGCAAAGGCGGCGGTGCTCCCCTCCCCCATTGCTCCCTCCCTTGTTGTCCCTCCATGCC
CACTCGAGGCCGATGCTGCATGGCCCTCCACCGTCTCCCAGACATGGCCGCATAAAAGAAAAAACAAAAGAGTGGTGGGC
TTAGCTGCGGTCAAAAGAAAA---AAAGGAGTGGTGGGCTTAGCTGCCCGCAAAAGAAAAAAAAAGG----------AGC
TTGGCTGGGCTGGCTGGGTAGGTTGGGCCGGGCCTAGCAAAGCCTACCCACCAAAGGGATTGGATTGAAGGAAAAAAAAA
ACAGTGTTTATGGGTGCGATGGGGGAAAGGAAAGGAAGTTTCTGTCCGTGTCGCACTGAAACCCACGCCAAGCGCGTGCC
CTCCCCTATTATTTATTTATATG----------------------CTTCTCCTTGGGACAGCACAGCAGAAGCAGGATAC
TGATCTGAATTTCCCCTTTCCTCTTCTTCTTGTTGATCTGAATTTCTCTTGCTTGAGCTGC-------------------
---GAGCTGCCGGAGCCATGTCGTCCTCCTCCTTCTCCAAGGCCAGATTCGAGGTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTGTTCCTCTGCTCAACCCTACCTACTTCTTCATCATCATCTCATAGACTCATACATAGATACTCCTCCTGCT
AGATAAAGATAAGATGATAATTCACCAGACCAGATATAGAA----------------------------TCCAATCGAAT
CTGACATCAATTGCAACCTCAATTGCCTTGCTAATAATACAC-------------TACATACATACATACTAGTAATTGC
CCTGCAGCAGCAGCACTAAGTAAGAGGATGGGATGGATTACATCTCCTCTCCTCTCCTCACCTAAACAAACAATTACAAG
TGCTGAT-------------------------------------------------------------------------
-----------------------------------TCTTCTCTTTTGATTTGCTTGGCTTGCCGTGCGTGCAGGGTAAAG
GAGTAGGAGGC---GGCGGAGCC---------GGGAGATCCATATCGCTGGCCGCCTCCAGGGCCAAGCTCGCCGCGGCC
ACCGC------------CAGCGCCAAGAAAGCAGCTGCTACTACAGCTA---------GCGGGCGGGGCAAGGGCAAGGG
CAAGGCCGCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGATATCCCAGAGGAGGTGATT----------CCCTCA
AA-------TTCTTCTTTCA-------------TGTA-------TGCTTTCAGTTCAAGCATCTGATTTGGGAACCATTT
TTGCAAT--CAATTTCTCTTGGCTGGGCTGGCAGAGGGAGCCCCTTCGGATCTTCTACGAATCGCTCTCCAAGCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCTACCAAC--------------CCCATCTC-ACCTCTGCTCTTCTCTGCTC
TGCTCCACCAATTAATCACCACTTACTA---CTTACTAG----TGCTTGCTTGCTTGTCCACAAGTCAAGTTATCCCCAC
CCAGTT------ACTCAGTTACTAGGACTGTT-------CTCATCGATGCATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTA--------GCTTCCCTCCCTCCCTGCAC-----------ACACC-----TAGCTACCTAATTACA
CTA-GTG---GTCTTCACAAACAACTTC--------ACTCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACTTCA-AAAAATGTATCCTCTTCCAAATTTACTAC------------------------------T-----------
--------------------------CCA---------------------------------------------CCAATA
TTTTACTACAGCAACATCATTCAGGCCTGACCTCACGGACGGGCTTACAGAATCACCTACTACTAGTTTTTTACTGCAGC
AA----TATGTTATACCACCACACCATTGCTCTGCAATGTATGTATGTATGTATGT------------G-----------
ATACTTATCTGACAGACACGACATACATAAAACCTCTTC--GCAGGTTAATGGAGCATGGGCTGTTATCTCCGGAGAGAG
CCAAGAAAGCCTATGACAGAAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCGATCAAGTCGTCAAATTCCAAC
ACTGTCAGCAAACACAACAACAAC------------AAACCTGCAGAGACCTGGAAGAAACCGGCACCAGTGGTTTCTTC
TTCTTCCACAGCGCGTCACAACACGGATCATACCGCCGCCAAGGCCAAGAGAAGAGTCGAGTACAGCAGCGA------CG
ACGACGACAAAGAATTCATTGTCAAGCTCAAGAGACCCAATTTCAACTCCAACTCCAACTCCAGTTCCAGGGGTGGCTGA
ACTGCTCCTCAAC-TTGATGAATGGGCCTGTCTGTCTGTCTGTTTGTTTCTTTCCAGCT-AGCACATATCCTACTACATG
GATCA---AGCAATACCG--TCTCAGATTCAGATTCAGATCACTAACTCGACTTTTTTATATTTATTTTGTTTTTCACCC
TACAAGTACAACAATGAATTGGCTCTTCTGACTACA-TACATATATATATATGTCTGTCTGTGTATTTCAGTTCAGAGAG
AAGATATACCAT---TACATTTTTGTTGTAAGCAATGCCCGGTGAAAAT--------AATGAGTGAATAAATGAACACAC
TCAGTAAGTTCGTCTGC--ATATTGTGTCTGTTTGTTCCCGATGAGGAAGAGGGAGTC----------------------
---TTTTTTGTTAACTCACTCATAATGCAGCATCAAGCTGATAGAATGCGGCCTCTGCATGATTAGGATGCGCACTAGCA
TAACCTGATGATAAGAAATAAAAAGGACATATAGGAAACAGTAGAGCCACATGAGACCGAAACTATGCCTATATTGAAA-
-----------CTATTCAGAGAGTATGCCGCTATCCATGATGGACAAAGGACCCTGATAAGTGCCACACGTGTGGCACCA
ACACATGCCAATTCCAAAGTTTTTGATAGCAAATTTAGTGACGCGAGAGGATGACAACTTTAGTTGTCAAGCATGGCGAT
TTTCTTTCCAGATAGCAAGTTCCAGTTTTTTTTTTGTTTGTTTTTTCTTTTCGGATGACAACTTTAGCTGTAAAAAACG-
TCAGGACCGGAGTGAGGGAGTCCTGAACTAGGGGATCCTCGGGTTGCCGTTCTATCTTTTATGGGCCGGACAGGTGGGCC
GCTCTGTGATTATTATTGGAAGGCCGAGCTATAAGGTGACTCTGTGTAGTTCAGGAAGGAAACCTCCAAAGCCTTGGTGT
GTCCTCCAAGTCAAGATGGTAGAATCGGCACGATTATTCCGTGATGGCAACCGACCATGTGTAACCCTAGGTACCCCTGG
TGTCTATATAAACCAGAGG
>chr1A_630
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---------------------------------------------------------------------GAGTGGTGGGC
TTAGCTACCCGCAAAAGAGAAAAAAAAGGAGTGGTGGGCTTAGCTACCTGCAAAAGAAAAAAAAGAGTGGTGGGCTTAGC
TTGGCTGGGCTGGCTGGGTAGGTTGGGCCGGGCCTAAGAAAAGGAA----------------------------------
-----GTTTATGGGT------GGGGAAAGGAAAGGAAGTTTCTGTGCGTGTGGCACTGAAACCCACGCCAAGCGCGTGCC
CTGCTCTGCTCTGCTCTCCTCTCCTATTATATCCTTGTCCTTGTCCTTGTCCTTGGGACAGCACAGCC------------
---------TTTCCTCTTTCTTCTTCTTCTTCTTCTTGTTGAGGCTGCTTGAAGAAGG----------------------
-------TGCCGGAG--ATGTCGTCGTCGTCCTTGTCCAAGGCCAGATTCGAGGTCTGTCTCTACTCTCCTTCCTCCCCG
CCTCTCTCAATTCCTCTACTC---------TACTTCTTCATCATCATCTCATAGCCATACCAATACATACTCCACTACTC
C--T--AGATAACATGATAATTCACCACACCACACCACACCAGACCAGACCAGATAGAGAATCCACTACTCCAGTCGAAT
CTGACATCAATTGCAACCTCAATTGC-----TAATAATACAC-------------TACATACATAC-GACAAGTAATTGC
TCTCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TCTCTTCTCTTCTCTTCTCTTTTGATTTGC---------CGTGCGTGCAGGGTAAAG
GAGGAGGAGGAGCAGGCGGATCC---------GGGAGATCCATATCGCTGGCCGCCTCCAGGGCCAAGCTCGCCGCCGCC
ACCGC------------CGCCGCCAAGAA---AGCCGCTACTACAGCTA---------GCGGCCGGGGCAAGGCCAAGGC
CAAG---GCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGACACCCCAGAGGAGGTA-------------------
--CAATTTCTTCTTTCATCATACTTATCATACTTGTA-------TGCTTCCAGTTCAAGCATCTGATTTGGGAACCCTTT
TTTGCAATGGAATTTGGCTTTGCTTGGCTGCCAGAGGGAGCCCCTGAGGATCTTCTACGAATCGCTCTCCAAGCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACGTCTCTG-------------------------CCTCTGCTCTCCTCTGCTC
TGCTCCACCAATTAATCGCCACTTACTGC----------------------TGCTTGCCCACAAGTTACTAGTAGAGTAG
GCTGCAATCCCAACCCAGTTACTAGTAGAGTACTAGTCTCT----GATTGATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTCCTTAGCT------CT----TCCCTCCCTGCAC-----------ACATCACGTATAGCTACCTAATTACT
AC----ACTAGCATTCACAAACAACTTCACTCTCAAACTCTCAATTATCCCTCCCTGATGATTCACACACACACACA--C
ACACACTTCAAAAATGTACCCTCTTCCAAATTTACTACGTATACTGCTGCCGAGTACTACTACTCCACT-----------
--------------------------CCA---------------------------------------------CCAATA
TTTTACTAAAGCAACAACAGTCACACCTGTATGTATGTATGTATGTATGT------------------------------
------------------------------------ATGTATGTATGTATGTATGT------------G-----------
ATTCTTACCTGACAGACACAACAT------ACACACATATTGCAGGTTAATGGAGCATGGGCTGTTATCTCCGGAGAGAG
CCAAGAAAGCCTATGACAGAAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCCATCAAGTCGCCAAATTCCACC
ACTGTCACCAAAC---------AC------------AAACCTGCAGAGAGCTGGAAGAAACCGGTACCACTGGTTTCTTC
TTCTTCCACAGCGCGTCACAACACAGATCATTCCGCCGCCAAGGCCAAGAGAAGAGTTGAGTACAGCAGCGACGATGACC
ACGACGACAAAGAATTCGTTGTCAAGCTCAAGAGACCCAATTTCAACTCCAACTCCAATTCCAATTCCAGGGGTGGCTGA
ACAACTCCTCAACATTGATGAATGGGCC----CGTCTGTCTGTTTGTTTCTTTCCAGCTAAGCACATATCCTACTACATG
GATCA---AGCAATACCA--TCTCAGATTCAGACTCAGATCACTAACTCGACTTT----TATTTATTTTGTTTTTCACCC
TACAAGTACAACAATGAATTGGCTCTTCTGACTACA-TACATATATAT----GCCTGTCTGTGTATTTGAGTTCAGAGAC
AAGATAGACATTTACTACCTTTTTGTTGTAAGCAATGCCTGGTGAAAAT--------AATGAATGAATAAATGAACACAT
TCAGTAAGTTCGTATGTGTATATTGTGTCTGTTTGTTCCCGTTGACGAAGAGGGAGTTTTTTTT----------------
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>chr1B_925
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-------------------------------------------------------------------------------C
TGATCTGAATTTCCCCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTGTGTCTGTCGCTCGCAGCTCGCA
GTTGAGCTGCCGGAG--ATGTCGTCCTCCTCCTTGTCCAAGGCCAGATTCGAGGTCAGTAAT--CTCCTCTTCCCCCTCT
CTCAAGTCAATTCCTCTACCCTACCCTACCTACTTCATCATCTTCATCATCATCATCATCATCATCATCTCATATACACT
AGAT--AGATAAGATGATAATTCACAGGGCAAGACCAGA---------------------------------AATCGAAT
CTGACATCAATTGCAACCTCAATTGTCTTGCTAATTATACATTACATACCATACATACATACATAC-TACTAGTAATTGC
ACTAAGTA-------------AAGAGGATGGGATGGATTACCTCTCCTCTCCTCACCTCAACAATTGCTAGGCCTAGTAC
CAGTACCAGGGGGTGCTGATTCTTTCCAAGCAAGCAGAGTAAAGCTTGCAATTGCACTTGAGCTTCAACACCAGCCATGC
CGTGTCCGTCTCATCTCATCCGCTCTCTTGTCTTCTCTTCTCTTGTCG----------TTGGCGTGCGTGCAGGGTAAAG
GAG------------GCGGAGCC---------GGGAGATCCATATCGCTGGCCGCCTCCAGGGCCAAGCTCG--------
-CCGC------------AGCCACCAAGAA---AGCTACTACTACTAGTACAGCCGGAGGCGGGCGGGGCAAGGGCAAGGC
---G---GCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGAAACACCAGAGGAGGT----------------CTCT
CTCAAATTCTTCTTTCATCATACTCC---TACTTGTAGTATGTATCT------------CATCTGATCTGCACAAGAAAA
TTCTCTACTGATTTGATTTCACTC------GCAGAGGGAGCCCCTGAGGATCTTCTATCAATCGCTCTCCAACCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCTAC------------------CCAC-CCC-A---------------CCTC
TGCTCCACCAATTGCTCACCTGTTACTA-----TACTAG----TGCTTGCTTGACCACA---------------------
----------------AGTTACTAGTGCTAGT-------CTGATCCATCCATCCATTGATTTCTCTTCTCTGAATGTCAC
TCAATCTAGATACGTCCATTTTCGAGACAAGTAATTTCGAACGGAGGCACATCTACAGT-----TTGCGACCTAATTACA
CTA-GTAGTAGTATTCACAGACAACTTCACTCTCAAACTCTGAATTACACCTCCATAGTT---------------CA--C
ACACACTTGAAAAATGTATCCTCTTCCAAATTTACTAC------------------------------T-----------
--------------------------CCATCAATATTATACTGCTGCTGCAGACTTCCCTATACTGCTACTCCACCAATA
TTTTACTACAGCAACAACAGTCGGACCTCACCTCAAGGGGTTACACACAGAATCACCTACTAGTAG---TTTACTGCAGC
AATATGTATGTTATACCACCACACCATTGCTCTGCAATGTATGTATGTATGTATGTATGTATATATGTGTGTATGTAATA
ATACTTACCTGACAGACACAACACACACACACACACATCTTGCAGGCTAATGGAGCACGGCCTGTTATCTCCGGAGAGAG
CCAAGAAAGCCTACGACAGGAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGATCCCCATCAAGTCGTCAAATTCCACC
ACTGTCAACAAGC---------ACAATAACAACAATAAACCTGCAGAGAGCTGGAAGAAACCTGTACCAGTGGTTTCTTC
TTCTTCCACAGCGCGTCACAACACAGATCATTCCGCCGGCAAGGCCAAGAGAAGAGTCGAGTACAGCAGCGACGACGACG
ACGACGACAAAGAATTCATTGTCAAGCTCAAGAGACCCAATTTCAACTCCAACTCCAATTCCACTTCCAGGGGTGGCTGA
ACTGCTCCTCAAC-TTGATGAATGGGCCTGTCTGTCTGTTTGTTTGTTTCTTTCCGGCT-AGCACATATCCTACTACATG
GATCATCAAGCAATACCATCTCTGA--TTCAGATTCAGATCACTAACTCGACTTT----TATTTATTTTGTTTTTCACCC
TACAAGTACAACAACGAATTGGCTCTTCTGTTCTGACTACATATATAT----GTCTGTCTGTGTATTTGATTTCAGAGAC
AAGATAGACC-T---TACCTTTTTGTTGTAAGCAATGCCTATATTGTGAAAATAATGAATGAATGAATAAATGAACACAC
TCAGT-----------------------CTGTTTCTTCCCGATGAGGAAGAGGAGTTTTTTTTTTTTGGATTGATAAAGA
GCTTTTTTTGTTAACTCACTCATAATGCAGCATCAAGCTGATAGAATGCAGCCCCTGCATGATTAGGATGCACACTAGCA
TAACC---TGATAAGAAATAAAAAGGAAATATAGGAAACAGTAAAGCCACATGAGGCCGAAACTATGCCTATGTCGAAGA
GGATGGTGGTCCTATTCAGAGAGTATGCCGCTATCCATGATGGATAAAGGACCCTAATAAGTGCCACACGTGTGGCACCA
ACACATGCCAACTCCAAAGTTTTTGATAGCAATTTTAGTGACGC--GAGGATGACAACTTTAGTTGTCAAGCATCGCAAT
TTTTTTTTCAGATAGCAAGTTCCAGTTTTTCTA--GTTTGTTTTTTCTTTTCGAATGACAACTTTAGCTGTAAAAAAACA
TCAGGACCGGAGTGAGGGAGTCCTGGACTAGGGGATCCTCGGGCTGCCGTTCTATCTTTTATGGGCCGGACAGGTGGGCC
GCTCTGTGATTATTATTGGAAGGCCGAGCTATAAGGCGACTCTGTGTTCACC---AAGGAAACCTCCAAAGCCTTGGTGT
GTCCTCCAACTCAAGATGGTAGAATCGGCAAGATTATTCCGTGATGGCAACCAACCATGTGTAACCCTAGGTACCCCTGA
TGTCTATGTAAACCAGAGG
>chr6A_1350
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-----------------------------------TCTTCTCTTTTGATTTGCTTGGCTTGCCGTGCATGCAGGGTAAAG
GAG------------GAGGAGGCGGAGGAGGTGGGAGATCCATATCGCTGGCCGCCTCCAGGGCCAAGCTTGCCGCCGCC
ACAGCCACCACCACAAGCACCGCCAAGAA---AGCTGCTACTACAGCTA---------GCGGCCGGGGCAAGGCCAAGGC
---C---GCC---AAGGTCTTCTCCCTCACTGGCCAGAAGTTTGAAACCCCAGAGGAGGTACTCTACTAATTCCCTATCT
CTCAAATTCTTCTTTCATCATAG-TATCATACTTGTA-------TGCTTCTAGTTCAAGCATCTGATGTGGGAACCCTTT
TTGCAAT--GAATTTTGCTTTCCTGAATTCACAGAGGGAGCCCCTGAGGATCTTCTACGAATCACTCTCCAAGCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTATGTCT-----------------------------------------------
---------------------------------------------------------------------GTTA-----AG
GCTGCAATCCCCACCCAGTTACTACTACTAGA-------CT----GATCGATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTACCTAGCTAGCTTCCCTCCCTCCCTGCAC-----------ACACC-----TAGCTAGCTAATTACA
CTA-GTG---GTGTTCAGAAACAACTTC--------ACTATGAATTACC-------------------------------
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>chr7A_1350
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-----------------------------------TCTTCTCTTTTGATTTGCTTGGCTTGCCGTGTGTGCAGGGTAAAG
GAG------------GAGGAGGCGGAGGAGCTGGGAGATCCATATCGCTCGCCGCCTCCAGGGCCAAGCTCACCGCCGCC
ACCGC------------CGCCGCCAAGAA---AGCTGCTACTGCAGCTA---------GCGGCCGGGGCAAGGCCAAGGC
---T---GCCAAGTC---CTTCTCCCTCACCGGCCAGAAGTTTGAAACCCCAGAGGAGGTACTCTACTAATTCCCTCTCT
CTCGAATTCTTATTTCATCATAG-TATCATACTTGTA-------TGCTTCCAGTTCAAGCATCTGATTTGGGAACCCTTT
TTGCAAT--GAATTTGGCTTTCCTGAATTCACAGAGGGAGCCCCTGAGGATCTTCTACGAATCACTCTCCAAGCAGATCC
CATCCAGCAACATGGCCGAATTCTGGTATGTCTGTACTTTGTACCTACCTACCCACCCC-ACCTCTTCTCTTCTCTGTTG
TGCCGCACCAATTAATCACCACTTACTA---CTTACTAG----TGCTTGCTTGCTTGTCCACAAGTTAAGTTA-----AG
GCTGCAATCCCCGCCCAGTTACTACTACTAGA-------CT----GATCGATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTACCTAGCTAGCTTCCCTCCCTCCCTGCAC-----------ACACC-----TAGCTAGCTAATTACA
CC----AGTGGTGTTCAGAAACAACTTCACTCTGAATTACC---------------------------------------
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>chr1B_1454
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-----------------------------------------------------------------------GCAGCCGCC
AGCGC------------CAGCGCCAAGAA---AGCTGCTACTAGTA---CAGCTGGAGGCAGCCGGGGCAAGGGTAAGGC
---G---GCCAAGAAGATCTTCTCCCTCACCGGCCAGAAGTTCGAAACCCCAGAGGAGGTACTCTACTAATTCCCTCACA
AA-------TTCTTTCATCATACTCC---TACTTGTA-------TCT------------CATCTGATCTGCACAAGAAAA
TTCTCTACTGATTTGATTTCACTC------GCACAGGGAGCCCCTGAGGATCTTCTATGAATCGCTCTCCAACCAGATCC
CATCCAGCGACATGGCCGAATTCTAGTACCCAC------------------CCTACCCC-ACCTCTGCTCTTCTCTGCTC
TCATCCACATATTAATCGCTTGTTACTG-----TACTAG----TGCTTGCTTGCTTGTCCACATGTTAAGTTA-----AG
GCTGCAATCCCCTCCCAGTTACTAGGACTAGT-------CTGATCGATCCATCCGTTGATTTC-----TTTGAATGTCAC
TCAAATCCTTAGCTAGCCAGCTAGCT----TCCCTCCCTGCAC-----------ACATC-----TACCTACCTAATAACA
CTA-CTAGTAGTATTCACAAACAACTTCACTCTCAAACTCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACACTTGAAAAATGTATCCTCTTCCAAATTTACTAC------------------------------TAGTATTATACT
ACTGCAAACTTCTCTGTACCACTACTCCA---------------------------------------------CCAATA
TTTTACTACAGCAACTACAGTCAGACCTCACCTCA---------------------------------------------
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>chr7B_1460
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-----------------------------------------------------------------------------GCC
AGCGC------------CAGCGCCAAGAA---AGCTACTACTAGTA---CAGCCGGAGGCGGCCAGGGCAAGGGCAAGGC
---G---GCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGAAACCCCAGAGGAGGTACTCTACTAATTCCCTCTCA
AA-------TTCTTTCATCATACTCC---TACTTGTA-------TCT------------CATCTGATCTGCACAAGAAAA
TTCTCTACTGATTTGATTTCACTT------GCAGAGGGAGCCCCTGAGGATCTTCTATGAATCGCTCTCCAACCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCCAC------------------CCCACCCC-ACCTCTGCTCTGCTCTGCTC
TCATCCACATATTAATCGCCTGTTACTA-----TACTAG----TGCTTGCTTGCTTGTCCACATGTTAAGTTA-----AG
GCTGCAATCCCCACCCAGTTACTAGGACTACT-------CTGATCGATCCATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTAGCCAGCTAGCT----TCCCTCCCTGCAC-----------ACATC-----TACCTACCTAATAACA
CTA-CTAGTAGTATTCACAAACAACTTCACTCTCAAACTCTGAATTACCCCTCCCTCATT-------------CACACAC
ACACACTTGAAAAATGTATCCTCTTCCAAATTTACTAC------------------------------T-----------
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>chr7B_1460
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-----------------------------------------------------------------------------GCC
AGCGC------------CAGCGCCAAGAA---AGCTACTACTAGTA---TAGCCGGAGGCGGCCGGGGCAAGGGCAAGGC
---G---GCCAAGAAGGTCTTCTCCCTCACCGACCAGAAGTTTGAAACCCCAGAGGAGGTACTCTACTAATTCCCTCTCA
AA-------TTCTTTCATCATACTCC---TACTTGTA-------TCT------------CATCTGATCTGCACAACAAAA
TTCTCTACTGATTTGATTTCACTC------GCAGAGGGAGCCCCTAAGGATCTTCTATGAATCGCTCTCCAACCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCCAC------------------CCCA-CCC-ACCTCTGCTCTGCTCTGCTC
TCATCCACATATTAATCGCCTGTTACTA-----TACTAG----TGCTTGCTTGCTTGTCCACATGTTAAGTTA-----AG
GCTGCAATCCCCACCCAGTTACTAGGACTAGT-------CTGATCGATCCATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTAGCCAGCTAGCT----TCCCTCCCTGCAC-----------ACATC-----TACCTACCTAATAACA
CTA-CTAGTAGTATTCACAAACAACTTCACTCTCAAACTCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACACTTGAAAAATGTATCCTCTTCCAAATTTACTAC------------------------------TAGTATTATACT
GCTGCAGACTTCTCTGTACCACTACTCCA---------------------------------------------CCAATA
TTTTACTACAGCAACAAAAGTCAGACCTCACCTCAAGG------------------------------------------
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>chr7B_1460
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-----------------------------------------------------------------------------GCC
AGCGC------------CAGTGCCAAGAA---AGCTACTACTAGTA---TAGCCGGAGGCGGCCGGGGCAAGGGCAAGGC
---G---GCCAAGAAGGTCTTCTCCCTCATCGGCCAGAAGTTCGAAACCCCAGAGGAGGTACTCTACTAATTCCCTATCA
AA-------TTCTTTCATCATACTCC---TACTTGTA-------TCT------------CATCTCATCTGCACAAGAAAA
TTCTCTACTGATTTGATTTCACTC------GCAGAGGGAGCCCCTGAGGATCTTGTATGAATCACTCTCCAACCAGATCC
CATCCAGCGACATGGCCGAATTCTGGTACCCAC------------------CCCACCCC-ACCTCTGCTCTGCTCTGCTC
TCATCCACATATTAATCGCCTGTTACTA-----TACTAG----TGCTTGCTTGCTTGTCCACATGTTAAGTTA-----AG
GCTGTAATCCCCACCCAGTTACTAGGACTAGT-------CTGATCGATCCATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTAGCCAGCTAGTT----TCCCTCCCTGCAC-----------ACATC-----TACCTACCTAATAACA
CTA-CTAGTAGTATTCACAAACAACTTCACTCTCAAAATCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACACTTGAAAA-TGTATCCTCTTCCAAATTTACTAC------------------------------TAGTATTATACT
GCTACAGACTTCTCTGTACCACTACTCCA---------------------------------------------CCAATA
TTTTACTACAGCAACAACAGTCAGACCTTACCTCAAGG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5B_1461
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------CC
AGCGC------------CAGCGCCAAGAA---AGCTACTACTAGTA---CAGCCGGAGGCGGCCGGGGCAAGGGCAAGGC
---G---GCCAAGAAGGTCTTCTCCCTCACCGGCCAATAGTTCGAAACCCCAGAGGAGGTACTCTACTAATTCCCTCTCA
AA-------TTGTTTCATCATACTCC---TACTTGTA-------TCT------------CATCTGATCTGCACAAGAAAA
TTCTCTACTGATTTGATTTCACTC------GCAGAGGGAGCCCCTGAGGATCTTCTATGAATCGCTCTCCAACCAGATCC
CATCCAGCGACATGGCTGAATTCTGGTACCCAC------------------CCCA-CCCCACCTCTGCTCTGCTCTTCCC
TCATCCACATATTAATCGCCTGTTACTA-----TACTAG----TGCTTGCTTGCTTGTCCACATGTTAAGTTA-----AG
GCTGCAATCCCCACCCAGTTACTAGGACTACT-------CTGATCGATCCATCCATTGATTTC-----TCTGAATGCCAC
TCAAATCCTTAGCTAGCCAGCTAGCT----TCCCTCCCTGCAC-----------ACATC-----TACCTACCTAATAACA
CTA-CTAGTAGTATTCACAAACAACTTAACTCTCAAACTCTGAATTACCCCTCCCTCATT-------------CACA--C
ACACACTTGAAAAATGTATCCTCTTCCAAATTTACTAC------------------------------TAGTATTATACT
GCTGCAGACTTCTCTGTACCACTACTCCA---------------------------------------------CCAATA
TTTTACTACAGCAACAACAGTCAGACCTCACCTCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr6A_1767
--------------------------------------------------------------------------------
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----------------------------------------------------------C-ACCTCTGTTCTTCTCTCCTC
TGCTCCACCAATTACTCACCTGCTACTACTACTTACTAGTGCTTGCTTGCTTGCTTGTCCACAAGTTAAGTTA-----AG
GCTGCAATCCCCACCCAGTTACTACTACTAGA-------CT----GATCGATCCATTGATTTC-----TCTGAATGTCAC
TCAAATCCTTAGCTAGC--------T----TCCCTCCATGCAC-----------ACATCAGGAATAGCTTCCTAATTACA
CTAGCTAGTAGTATTCACAAACAACTTCACTCTCAAACTCTGAATTACCACTCCCTCGTTG---------------A--C
ACACACTTCAAAAATGTATCCCGTTCCAAATTAACTACG-----------------------------------TATACT
GCTGCTAAGGACTAC-----------------------------------------------------------------
---TACTACAGCAACAACATTCAGGCCTGAC-----GGACGGGGTTATAGAATCACCTACTAG------TTTACTGCAGC
AA----TATGTTATACCACCACACCATTGCACTGCAATGTATGTATGTATGTATGTATGTATGTATGTG-----------
ATACTTACCTGACAGACACGACATACATACAACCTTTTC--GCAGGTTAATGGAGCATGGGCTGTTATCTCCGGAGAGAG
CCAAGAATGCCTACGACAGGAAGCTCAAACGGCAGCAGCATATCAAATCAGGGACCCTGATCAAGTCGTCAAATTCCAAC
ACTGTCAGCAAACACAATAACAAC------------AAACCTGCAGAGACCTGGAAGAAACCGGCACCAGTGGTTTCTTC
TTCTTCCACAGCGCGTCACAACGCGGATCATTCCGCCGGCAAGGCGAAGAGAAGAGTCGAGTACAGCAGCGACGACGACG
ACGAC---AAAGAATTCATTGTCAAGCTCGAGAGACCCAATTTCAACT------CCAATTCCAGTTCCAGGGGTGGCTGA
ACTGCTCCTCAAC-TTGATGAATGGGCT----TGTCTGTCTGTTTGTTTCTTTCCAGCT-AGCACATATCCTACTACATG
GATCA---AGCAATACCG--TCTCA--TTCAGGTTCAGATCACTAACTCGACTTT-TTATATTTATTTTGTTTTTCACCC
TACAA------CAATGAATTGGCTCTTCTGACTGCA-TATATATTTATTTAT----------------------------
--------------------------------------------------------------------------------
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-------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
------S-SSS-------S--------------------------S--S---------------SS--------------
------------------------------------SS---SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS----------SSSSSS------------------------S-----S----------------------------
--S-S--SS-S-SSSS-SS-S-S-------------------------S------------------SSSSSSSSSSSS-
-------------------------------S--SS---SS--S-S--------S--S--S-------------------
---------------SS-----------------S----------------------S-----SSSS----SS---S-SS
S-------SS-------S---S----------------------------------SS-S-S---S-------S-SSS--
----SS----------------------------SSSSSSS---------------------------------------
------------------------------------------------------------------S-------------
S--SSSSSSSSSSSSSSSSSS--------------------S------------S-----S-S-SSSSS-SSSS--SS-S
SSS-SSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S------S-----------------------------------------------------------------S---
-----------------------------SSS-----------------------------------------------S
----SSS--------------------------------------S-S------------SS-S-----------S----
--------------SSS--------------------------------S------------------------------
---------S-----S----S------------------------SS---------------------------------
----------------------------------S--------------------S-S----------------------
------------------------------------------------------------------S------SSSSS-S
S-S--S--------S--------------------------S------S-------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
----SSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S------------------S--------------------------S---SSS-----------
--------------------------------------------------------------------------------
-------S---------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------------------------S------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
------------------------------------------------S-------------------S----------S
------S---S-------S--------------------S----------------------S-----------------
-------------S--S----------------------------------------S----------------------
-------------------------------------------------S---S-----------------S--------
-----SSS-------------------S---------------S-----------S----------------S-S---S-
--------------------------------------------S----------S------------------------
-----------S--------------------S-----------SS----------------------------S--S--
---S---S----------------------S-SSS------------------S-----------------------SS-
-------------------------S-----------------S------------------------------------
------------------------------------S----------SSSS-SSS-------------------------
---------S--------------------S---------------------S--------------------------S
-------S-----------
>forward_419
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TCCCTAACTCCACCCCCTC-------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>reverse_2596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGGACGGGCTTACAGAATCA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_498
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CGGGTTTGGGCAAAATGC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_2898
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAACAACAAACCTGCAGAGACC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_547
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCATTGCTCCCTCCCTTGTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_3329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATATGTCTGTCTGTGTATTTCAGTTCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
