>input_sequence_47492
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-------------------------ATGCCTAGAGAGCGGCCTTTCCGCATGCCCGGCGCCCGTGGCGGTGGCGGTGGTG
GCGGCGGCGGGGACATCACGGTGCACGTCGAATATCTGGCGCGCACCCTGATGCAGAAGCAGGAGGGCGTGGCGGCGGAG
GAGCAGCACCGGGCCATGGCGACCAGCCACCGGCTGTCCCGCGTCCCCCTCCACCTCCGCAACAACAACGCCAAGGACTA
CACGCCGGGGTTCGTCGCCATCGGCCCGCTCCACAGCCGCGAGGACCGGCGCCTCCGCCCCGCCGAGCGGCTCAAGGTGG
CGTACCTCAACAGCCTCATCTCCCGCGGCCACCCCGACACGGCGCAACACCTCGCCGTCATCCAGGGGTACATCCGCGTC
GTCGCCGCCCGCGAGCAGGAGGCCCGGGCGATGTACGTCGGGGAGGACGTCGCCGAGATTCCCCCTGATGAGTTCATCCA
GATGATGGTGCTCGACGGCTGCTTCATCATCGAGCACCTCATCAACGTCGCCACGGGCCACGAGGAGCCGTCGCTGCACG
CCACGCCCTTCGGCCCCGCGCAGCTCTCCGTCGACCTCGTCCTCGCCGAGAACCAGATGCCCTTCTTCGTACTCGTTGAT
CTCATCGCCAGCACCAAGCTGCCGGAGTTCGAGGCCACCGGGTACCCCGCGCCGGTGCTGCTCGTGAAGCTCGTGCTGTA
CTACCTCGCCGGCGAGAAGGGCCGCGACATGAGCGAGGAGCTGCCGCCGGCCGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGCGATGATCACCGCGGCGCGGACACGGTGGGAGCCGCCGCCCCGCACCATCCAGGACGGCGCGGTGATAGAGACG
GCACAGGAGGCGGCACGGCTGCTGCGCCGTATCCCGCTGCTGCTGTTCGTGCCGCTGCTGTACCCGATCCTCCCCGAGGA
CAAGAAGTGGAGCGCGAGCTACGGGAAGGAAGACGTGCCGGCGGCGAGCGACCTGAAGCGCATGGGTGTGCAGTTCAAGA
AGGCGCGCGCCGGCAGCGGGAGCAAGGCGGTGGCCGGCATCGCGTCGGTGCTGGGGCCCGTGCCGCTCGCGGTGAAGCTG
ACGCAGCACGAGGACCGGCTCCACCTCCCCCAGCTCCGGGTCGAGTTCCGCACGGCGCCGCTGCTGCTGAATCTGATGGC
GTTCGAGCAGTCGGCGTCGGCGTCGATGAAGACGCCGATGGACGTGTCGGCGTACGTGTGCTTCATGGCGAAGATGGTGC
AGTCGGCGGAGGACGCGGGGGTGCTGGCGGCGGCGGAGGTGGTGCAGCAGCACGGCGGCGCGGGCAACGAGACCAAGGAG
GCCGTGGCGAGGTTCTTCCGGACGATGGGCGTCGCGAGCGAGGCGGCGGCCGGCGGCGAGCTGCTGGTGACGAGCTACCT
CTGCGTGCTGCTGGAGAAGCTGCGGGAGCGGAGCCGCCACCCGCTGTACGTCATGTGGGCCGACGTGCAGCGGAACTACT
TCACGCTGCCGTGGGCCGTCGTCATCGAGGTCGTCGCGCTCGTCACCTTCGTCTCCACCATGGTCCAGACCTACACCTCC
GTCAAGTACCACAGCTGA--------------------------------------------------------------
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------------
>chr1A_1_TraesCS1A01G073100
GCCTAAAAGAGTAGCTTATTGAGTGTCTTTTGCTAAAAACTGTTGTCTATCTTTCAGACCTTCTTCAAGGATCACATGGG
CGTCGATTTGTATATGGAGCCAAATTTTGAAGACTATAGCTGCCAGGTAAAGGAAATTCAGGAATCAGGAATCATGTACA
TCTTGCTATGCTAAAGCAAAA-TCTCACAGCTATGCTCATT---TTTATCCCTTTTTCCAACCAAATGCCACTGAAGAAG
CAGTCTCCAATAACAAT-GTTGCTCGTTGCAGTTCAACTTTGGAGTGCCACCCCCACCTCCTGACACGGACAAGGCCCTG
AAGGAACCATGCTTGGACATATGCACAAACGCTAGACGGCGCAGAGAGCTTGGCAGCAGCGGTGGCCCGGATGGTCTATG
CCCCCAAGTTTGATCTGCTGCTTCTGAAAGGACGCACATGATAAATACTTAAAATGGTATGAA--TATAGATTTTTTTTA
GGGCTAAGTACGAATATACTCCCTCTGTCCCACAATATAAGAACGTTTGTCAAGC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CAGCAATGGTGCTGCCCCTGCTTCACCTGC----------GAC----TGAAGATGGATTT
GTAT------------------GTGGGCTTTGCGGGCTGGGCCGGCTTCTTCCCTAGGTGAACGGTATAGCATGATGTGC
ACATACACGCCACATGCTGCGCGCATGGGTTTAATTGGGATGTATGCAACCTACTA-------TAATTAGAATAACGAAG
T----------------------------TGAATCTCGTATTGTCTGCATGTACAAGCAAAGCAAAGAATTGGCA-----
CTGATGC-------------------------------------------------------------------------
--------------------------------------ATGTTCTGTCCTCTTTATCGCTGACGGAAGCTACGTATATAC
TACCTGTGTGTAGGCGTACAT-----------------------------------------------------------
------CATTGAGGGATCCTGTCGTTCTCAGATTTG--TTCTTGCGTGTCCATCTCATCATCATCGTCTCCCTCAG---A
GCTGGCATTCTCTGGGCTCAGATTCCATTCCGCCCCTATATATGTAGCCGGGCATGCAGTTCATGGCGGTCGTGGCATAG
CACGTGCACTGTTCCATCGTCCACGATGCCTAGAGAGCGGCCTTTCCGCATGCCCGGCGCCCGTGGCGGTGGCGGTGGTG
GCGGCGGCGGGGACATCACGGTGCACGTCGAATATCTGGCGCGCACCCTGATGCAGAAGCAGGAGGGCGTGGCGGCGGAG
GAGCAGCACCGGGCCATGGCGACCAGCCACCGGCTGTCCCGCGTCCCCCTCCACCTCCGCAACAACAACGCCAAGGACTA
CACGCCGGGGTTCGTCGCCATCGGCCCGCTCCACAGCCGCGAGGACCGGCGCCTCCGCCCCGCCGAGCGGCTCAAGGTGG
CGTACCTCAACAGCCTCATCTCCCGCGGCCACCCCGACACGGCGCAACACCTCGCCGTCATCCAGGGGTACATCCGCGTC
GTCGCCGCCCGCGAGCAGGAGGCCCGGGCGATGTACGTCGGGGAGGACGTCGCCGAGATTCCCCCTGATGAGTTCATCCA
GATGATGGTGCTCGACGGCTGCTTCATCATCGAGCACCTCATCAACGTCGCCACGGGCCACGAGGAGCCGTCGCTGCACG
CCACGCCCTTCGGCCCCGCGCAGCTCTCCGTCGACCTCGTCCTCGCCGAGAACCAGATGCCCTTCTTCGTACTCGTTGAT
CTCATCGCCAGCACCAAGCTGCCGGAGTTCGAGGCCACCGGGTACCCCGCGCCGGTGCTGCTCGTGAAGCTCGTGCTGTA
CTACCTCGCCGGCGAGAAGGGCCGCGACATGAGCGAGGAGCTGCCGCCGGCCGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGCGATGATCACCGCGGCGCGGACACGGTGGGAGCCGCCGCCCCGCACCATCCAGGACGGCGCGGTGATAGAGACG
GCACAGGAGGCGGCACGGCTGCTGCGCCGTATCCCGCTGCTGCTGTTCGTGCCGCTGCTGTACCCGATCCTCCCCGAGGA
CAAGAAGTGGAGCGCGAGCTACGGGAAGGAAGACGTGCCGGCGGCGAGCGACCTGAAGCGCATGGGTGTGCAGTTCAAGA
AGGCGCGCGCCGGCAGCGGGAGCAAGGCGGTGGCCGGCATCGCGTCGGTGCTGGGGCCCGTGCCGCTCGCGGTGAAGCTG
ACGCAGCACGAGGACCGGCTCCACCTCCCCCAGCTCCGGGTCGAGTTCCGCACGGCGCCGCTGCTGCTGAATCTGATGGC
GTTCGAGCAGTCGGCGTCGGCGTCGATGAAGACGCCGATGGACGTGTCGGCGTACGTGTGCTTCATGGCGAAGATGGTGC
AGTCGGCGGAGGACGCGGGGGTGCTGGCGGCGGCGGAGGTGGTGCAGCAGCACGGCGGCGCGGGCAACGAGACCAAGGAG
GCCGTGGCGAGGTTCTTCCGGACGATGGGCGTCGCGAGCGAGGCGGCGGCCGGCGGCGAGCTGCTGGTGACGAGCTACCT
CTGCGTGCTGCTGGAGAAGCTGCGGGAGCGGAGCCGCCACCCGCTGTACGTCATGTGGGCCGACGTGCAGCGGAACTACT
TCACGCTGCCGTGGGCCGTCGTCATCGAGGTCGTCGCGCTCGTCACCTTCGTCTCCACCATGGTCCAGACCTACACCTCC
GTCAAGTACCACAGCTGAAATGCACCGCGCGCACCGGAGTGTCAAATACCACAACGTCCAAAATCTTTGGCAAACTGACT
GTCTGGGCCTTGTGTTCTCGCACATTATTGTAGCCCACGGGCCCCATGCCACTTGCGTGTGCATATACAAG-----TGAT
TTGATTTTTTATTTAGCACATTAAATTTATTTTATT------------------------TATATAAATACAAGAAACTT
GAGCTTGATGAATGTTTAAAACTATGTTTTTCTAATATATCGTATTATAAGATGCAATGTAATGTAAAATTTGTATGTCA
TTTTTGCACATGGCAAACACATGCTTTAATATGCCACAAAAGCATGATCATTATGTTGCCGGATTATAGTGTACAAACCT
TTCTGCCAGGAACCGTTAATCAATGAATGGTGGTTTTCTCCTCTCCTCTC-----TCCTCCTCCCCCTCACCCTCAAACG
CGGTGGCTGTCGTCGGGCTCGCCCCTCCTTCTTCCTTCCCTCTCCGGTCCCCTCGTGCCTTCGTCCTCCCCTCCTCTCCT
CCTCCTTCTGCCTTGTCGTGTCCGGGCCGATGGGCGTCAAGTACCAGAACATTATCTTTCGCGGACCGAATGTCCGGGCC
TTGTGTTCTAGCGCATTTGTAGTCCACGGGCCCATGTTAGTTGCGTGTGCATATACAAGAGAAGTGATTTAATTTTTTTA
GCGCATTAAATTTATTTTATTTATATAAATATAAGAAACTTGAGCTTGATGAATGTTTAAAATTATGTTTTTCTAATATA
CTGAGTATCATATTTTAAGATGCAACGTCTTGTAAAATGTGTACGTCATTGTTACGCATGATACAAATGGTTGTACTTTG
GCATGAAATTGTGCAAACACACCCTTTAATATGCCATAAAAATATGCTCACTATATTGCCGGACTATCGTGTACAATTCC
TTTTGCCAAGGAAAAAATTCACCTCCCATGTTACATACACTAAAAGAACGCCCGTGCGTTGCAACGGGGCCACATTAACT
TTAAGAGTTCAA
>chr1B_1
GCCTAAAAGAGAAGTTTATTTAGCGGCTTTTACTAAAAACGGATTTCTATCTTTCAGACCTTCTTCAAGGATCACATGGG
TGTCTATCTGTATATGGAGCAAAATTTTGAAGACTATAGCTGCCAGGTAAAG-------GGAATTCAGGAATCATGTACA
TTTTGCTATGCTAAAGCAAAA-GCTCACAGCTATGCTCGTT---TTTATCCCTTTCTGCAATCAAGTGCCACCGAAGAAG
CGCTCTCCAATAACAATTGTTGCTCGTTGTAGTTCAACTTTGGAGTTCCACCCCCACCTATCGACACCGACAAGGCCCTG
AAGGAACCATGCTTGGACATATGCACAAACGCGAGACGGCGCAGAGAGCTTGGCAGCAGCGGTGGCCCAGAAGGTCTATG
TCCCCAAGTTTGATCTGCTGTTTCCCCAAGTATGTACTACTCCCTCCAATCCACAATGTAGTGCGCCCGCATTTTCCGAG
ATCTAAGTTTGACCGTAAATTTAACCAACAAGACCGAATGTGGCGGGAGCAAAACCTATGCTACTGAATTCGTATTTTTG
ATATAATTCAGC------------------------------------------------GATATAATTTTTGTTCCCGC
CGCAGTTGGTCTCGTTGGTTAAATTTACGGCCAAACATGAATCTCGGGAAACGCGGGCACACTACATTGTGGAATGGAGT
GGAATGGAGGGAGTATTATTCAGCGATGGGGCTGCCCCTGCTTCACATGGGGCTATACTACGTACATTGAAGATGGATTG
CATGATCTGCACGAACTGTATAGCGGGCTTCATGGGCTGGGCCGCCTTCTTCCCTAGCTGAACGGTC-------------
-------------------------------TAATTGGGATGTATGGTCTGCACATACACGCCTAATTCGAATAACAAAG
T----------------------------TGAATCTCATATGGTCTGCATGTACAAGTAAAGCAAAGAATTGACA-----
CCGATGTTCTGTCATCTTTATCGCTGACGGTAGCTACTTACTTCATCCGTCCGAAAAAATTTGTCCCTCAAATGAATGTA
TCTGGCACCAAGTTAAGTAAAACAAAGAATTGGCATTGATGTTCTGTCATCTTTATCGCTGACGGTAGCTACGTACTTCC
TTCGTCCGAAAAAGCTTGTTCCTCAAATGAATGTATCTGGCATCAAATTAGTGCTAGATACATTCATTTGAGGAACAAGC
TTGGGACATGGATGGATCGT---GTTCTCAGATTTATATTCTTGCGTGTCCATCTCACCATCATCGTCTCCAAGGTCCAA
GCTGGCATTC--TGGGCTTAGATTCCATTCTGTCA--CTATATGTAGCCGGACATGCAGTTCTTGGCTATCGCGACACAG
CGCGTGCACCGTTCCATCGTTCAGGATGCCTAGAGATCGGCCTTTTCGCATGCCCGGCGGCCGTGGCCGTGGCGGTGGTG
GCGGCGGCGGCGACATCACGGTGCACGTTGAATATCTGGCGCGCAGCCTGATGCAGAAGCAGGAGGGCATGGCGGCGGAG
GAGCAGCACCGGTCCATGGCGACCAGCCACCCGCTGTCCCGCGTCCCCGTCCACCTCCGCGACAACAACGCCAACTATTA
CACGCCGGGGTTCGTCGCCATCGGCCCGCTCCACAACCGCGAGGATCGGCGCCTCCGCCCCGCCGAGCGGCTCAAGGTGG
CGTACCTCAACAGCCTCATCTCGCGGGGCCACCCCGACCCGGCGCACCACCTCACCATCATCCAGAAGTACATCCGCGTC
GTCGCCGCCCGCTAGCAGGAGGCCCGGGCAATGTACGTCGGGGAGGAAGTCGCCGAGATTCCCCCCGATGAGTTCATCCA
GATGATGGTGGTCGACGGCTGCTTCATTATCGAGCACCTCATCAACGTCGCCGCGGGCCACGAGGAGCCGTCGCTGCACG
CCACGCCCTTCGGCCCCGCGCAGCTCTCCGTCGATCTCGTCCTCGCCGAGAACCAGATGCCCTTCTTCCTCCTCGTTGAT
CTCATCGCCAGCACCAAGCTGCCGGAGTTCGAGGCTTCCGGCCACCCCGCGCCGGTGCTGCTCGTGAAGCTCGTGCTGTA
CTACCTTGGCAGCGAGAAGGGCCGCGACATGAGCGAGGAGCTGCCGCCGGCGGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGAGATGGTCACCGCGGCGCGGACCCGGTGGGAGCCGCCGCCCAGCGCCACCCAGGACACCGGATG---------G
GCGCAGGCGGCATGGCGGCTGGTGCGCCGTCTACCGTCGATGGTTCTGGTGCCGCTGCTGTACCGGATTGTCCCCGAGAG
CCGCAGGAGGCGTGTGTG---------GGAGGACGTGCCGTCGGCAAGCGACCTGAAGAGGATGCGGGTGAAGTTCAAGA
AGGCGTCCCGCAGAGTGGGGACCACGCCAGTCGCCGACATCGCTTTGCTGATGGGCCCGGTCCCTCTGGCCGTGAAGCTA
ACGGAG---GATGGCCAGCTGCAGCTGCCGCAGCTGTTGCTCGAGGCCCGGACGGCGCCACTGTTGCTGAACCTGATGGC
GTTCGAGCAGTCTTGGCGGGTCAAGCA------------GGAGGTGTCGCCGTACGCAGCCTTCATGGCCAAGTTGGTGC
AGACAGCGGAGGATGCGGGTCTTCTGGCGGCGGCAAAGGTGTTGCAGCA-------------------------------
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>chr1A_47
----------------------------------------------CTATCTTTCAGACCTTCTTCAACGATCACATGGG
CGTCGATTTGTATATGGAGCCAAATTTTGAAGACTATAGCTGCCAGGTAAAG-------AGAATTCAGGAATCATGTA-A
TCTTGCTATGCTAAAGCAAAA-GCTCACAACTATGCTCGTT---TTTATCCCTTTCTGCAACCAAGTGCCACCAAAGAAG
CACTCTCCAATAACAATTGTTGCTCGTTGTAGTTCAACTTTGGAGTTCCACCCCCACCTATCGACACCGACAAGGCCCTG
AAGGAACCATGCTTGGACATATGCACAAACGCGAGACGGCGCAGAGAGCTTGGCAGCAGCGGTGGCCCAGATGGTCTATG
CCCCCAGGTTTGATCTGCTGTTTCCCGAAGTATGTATG-CTCCCTCCATTCCATAATGTAGTGTCTATAGATTTTTTGGA
AA------------------------GTCAAACATTGTAATCAAGTTTGTAGAGAAAACTATTTACATTTACAGTACCAA
ATATATAAAATATGAAACTACGTCTTATGATGAATCTAATGATATATGTTTCGCATTCTAGATGTAAATATTTTTCTCCA
CAAACTTGGTCAAAGTTGATGAGCTTTGAGTTTTCAAAAAATCCTCGTATATGTTTTAGTCCCTCAAATCCTCGTATGAT
AAAGTTGAAGGATTTG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCGAATAACAAGG
TTGGGCACTGCTTACACAAAGACGATGAATGAATCTCGTATGATCTGCATGTACAAGTAAAGAAAAGAATTAGCACACAC
TTTTCCCCCA----------------------------------------------------------------------
--------------------------------------------TGCCATCTTTATCGCTGACGGAAGCTACGGATATAT
T---TGTATATAAGCATACTA-----------------------------------------------------------
------CATTCTGCGT----------------------------------------------------------------
------------------TAGATTCCATTCTGCCCCTCTATATGTAGCCCTGCATATGTTTAAAGTGATCATCCACCAT-
--------------CATCACGAATGATGGCTAGAGAGCGAGGTGGAGGCATGACCGGCA---------------------
------GCGGCGACGTCGCGGTGCACATCGAACATCTGGCGCGCAGCCTGATGCAGAAGCAGGAGGACGTGGCGGCGGAG
GAGCAACACCGGACCATGGTGAGCAGACACCGGGTGTCCCGTGTCCCTGCCCGTCACCGTGACAGCAACCCCGACGCCTA
CACGCCGTGGTTCGTTGCCATTGGCCCGCTTCACAACCGTGAGGATCGGCGCCTCCGCCCCGCCGAACGGCTCAAGGTGG
CCTACCTCAACAGCCTCATCTCCCGTGGTCACCCGGACCCAACGCACCACCTCGCCGTCATCCAGGAGTACGTTCGCATC
GTCGCCGGTCGTGAGCAGGAGGCCCGGGCCATGTACGCCAGCGAGGAGGTCGTCGATATTGCCACTGATGACTTCATCCT
GATGATGGTGCTTGACGGCTGCTTCATCATCGAGCACCTCGTGAACGTCGCCACGGCCCGGGACGAGCCGTCGCTGCACG
CCACGCCCTTCGGCCCAACGCAGCTCTCCGTCGACCTCATCCTCGCAGAGAACCAGATGCCCTTCTTCGTGCTCGTTGAT
CTCATCGCCAGCACCAAGCTGCCGGAGTTCGAGTGCATGGGCTACCCCGCGCCAGTGCTGCTCATGAAGCTCGTGCTGTA
CAACTTCGCCGGCGAGAAGGGCCGCAGCATGAGCGAGGAGCTGCTGGCCGCCGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGAGATGGTCACCGCGGCGCGGACCAGCTGGTGGCGTCCGATACCTCACATCCTGGACGGTGGCTG---------G
GAGCAGGCGGTAAGGCGGCTGGTGCGCGGTCTACCGTCTCTGGTATTGGCGCCTCTGCTGCGCTGGATTGCCCCCGAGGG
CCGCAGGGGGCATGTGCG---------GGAGGACGTGCCGTCGGCAAGCGACATGAAGCGGATGCGGCTGGAGTTCAAGA
AGGCGCGCGTCAGGGGCATAACGGCGAGCGTGGCGGCCATCGCGTCGGTGATGGGCCCGGTCCCTTTGGTCGTGGAGCTA
ACGGACGGGGACTATCTTGT---GCTGCCGCAGTTGCGGCTCGAGTTCCGGACGGCGCCACTCCTGCTGAACCTGATGGC
GTTCGAGCGGTCAGCGTTGGCGTCAGCGAAGACGTTGTCCGACGTGTCGGCGTACATGTGTTTCATGACGAAGCTCGTAC
AGACGGCGGAGGACGCGGGCTTGGTTCTGGCGGCAGAGGTGGTGCAGCAGGACGGCAGCGCGGGCAACCAGAGCATAGAG
GAGGTGGTGAGGTTCTTCCGGATGGTGGGCGCCGCGAGCGAGTTGGCGGCTGGCGGCGAACTGCTGACGTCGAGCTACCT
GTGCGTGCTGGTGGAGAAGCTGAGGGAGCGGAGCCG--------------------------------------------
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>chr1D_47
----------------------------------------------CTATCTTTCAGACCTTCTTCAAGGATCACATGGG
CGTCGATTTGTATATGGAGCCAAATTTTGAAGACTATAGCTGCCAGGTTAAA-------GAAATTCAGGGATCATGTACA
TCTTGCTATGCTAAAAGCAAAATCTCATAGCTATGCTCATTTTTTTTATCCCTTTTTGCAACCAAATGCCACCGAAGAAG
CACTCTCCAATAACAA-TGTTGCTCGTTGCAGTTCAACTTTGGAGTGCCACCCCCACCTATCGACACGGACAAGGCCTTG
AAGGAACCCTGCTTGGACATATGCACAAATGCGAGACGGCGCAGAGAGCTTGGCAGCAGCGGTGGCCCAGATGGTCTATG
CCCCCAAGTTTAATCTGCTGTTTCTGAAACCAGGCACATTGG------------------------------TATG----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------ATTCAGCAATGGTGCTGCCCTGGCTTCACCTGGGGCTATACTAGAC----TGAAGATGGATTT
GTAC------------------GCGGGCTTTGCGGGCTGGGCCGCCTTCTTCCCTAGCTGAACTGTATAGCATGATGTGC
ACATACACGCCACATGCTGCGTGCATGGGTTTAATTGGGATGTATGCAACCTACTA-------TAATTAGAATAACGAAG
T----------------------------TGAATCTCGTATTGTCTGCGTGTACAAGCAAAGCAAAGAATTGGCA-----
C-------------------------------------------------------------------------------
------------------------------------TGATGTTCTGTCCTCTTTATCGCTGACGGAAGCTACGTATATAC
---CTGTATGTAAGCGTACAT-----------------------------------------------------------
------CATTCTGGGATCCT---GTTCTCAGATTTG--TTCTTGCGTGTCCATCTCATCATCGTC----------TCCAA
GCTGGCATTCACTGGGCTCAGATTCCATTCCGCCCCTATATATGTAGCCGGGCATGCAGTTCATGGCGATCGTGGCATAG
CACGTGCACTGTTCCATCGTTCAGGATGCCTAGAGAGCGGCCTTTTCGCATGCCGGGCGGCCGTGGCGGTGGC---GGTG
GCGGCGGCGGCGACATCACGGTGCACGTCGAATATCTGGCGCGCACCCTGATGCAGAAGCAGGAGGGCGTGGCGGCGGAG
GAGCAGCACCGGGCCATGGCGACCAGCCACCGGCTGTCCCGCGTCCCCCTCCACCTCCGCAACAACAACGCCAAGGACTA
CACGCCGGGGTTCGTCGCCATCGGCCCGCTCCACAGCCGCGAGGACCGGCGCCTCCGCCCCGCCGAGCGGCTCAAGGTGG
CGTACCTCAACAGCCTCATCTCCCGCGGCCACCCCGACACGGCGCAGCACCTCGCCGTCATCCAGGGGTACATCCGCGTC
GTCGCCGCCCGCGAGCAGGAGGCCCGGGCGATGTACGTCGGGGAGGACGTCGCCGAGATTCCCCCTGATGAGTTCATCCA
GATGATGGTGCTCGACGGCTGCTTCATCATCGAGCACCTCATCAACGTCGCCACGGGCCACGAGGAACCGTCGCTGCACG
CCACGCCCTTCGGCCCCGCGCAGCTCTCCGTCGACCTCATCCTCGCCGAGAACCAGATGCCCTTCTTCTTACTCGTTGAT
CTCATCGCGAACACGAAGCTGCCGGAGTTCGAGGCCACCGGCTACCCCGCGCCGGTGCTGCTCGTGAAGCTCGTGCTGTA
CTACCTCGCCGGCGAGAAGGGCCGCGACATGAGCGAGGAGCTGCCGCCGGCCGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGCGATGATCACCGCGGCGCGGACACGGTGGGAGCCGCCGCCCCGCGCCATCCAGGACGGTGCGGTGATAGAGACG
GCACAGGAGGCGGCACGGCTGCTGCGCCGCATCCCGCTGCTTCTGTTCGTGCCGCTGCTGTACCCGATTCTCCCCGAGGA
CAAGAAGTGGAGCGCGAGCTACGGGAAGGAGGACGTGCCGGCGGCGAGCGACCTGAAGCGGATGGGTGTGCAGTTCAAGA
AGGCGCGCGGCGGCAGCGGGAGCAAGGCGGTGGCCGGCATAGCGTCGGTGCTGGGGCCCGTGCCGCTGGCCGTGAAGCTG
ACGCAGCACGAGGACCGGCTCCACCTCCCCCAGCTCCGGATCGAGTTCCGCACGGCGCCGCTGCTGCTGAACCTGATGGC
ATTCGAGCAGTCGGCGTCGGCGTCGATGAAGACGCCGATGGACGTGTCGGCGTACGTGTGCTTCATGGCGAAGATGGCGC
AGTCGGCGGAGGACGCGGGGGTGCTGGCGGCGGCGGAGGTGGTGCAGCAGCACGGCGGCGCGGGCAACGAGACCAAGGAG
GCCGTGGCGAGGTTTTTCCGGACGATGGGCGTCGCGAGCGAGGCGGCGGCCGGCGGCGAGCTGCTGGTGACGAGCTACCT
GTGCGTGCTGCTGGAGAAGCTGCGGGAGCGGAGCCGCCACCCGCTGTACGTCATGTGGGCCGACGTGCAGCGGAACTACT
TCACGCTGCCGTGGGCCGTCGTCATCGAGGTCGTCGCGCTCGTCACCTTCGTCTCCACCATGGTCCAGACCTACACCTCC
GTCAAGTACCACAGCTGAAATGCACCG---------GAGTGTCAACGACCAAAATGTT----ATCTTTGGTAAACTGACT
GTCTGGGCCTTGTGTTCTCGCACATTAT---GGCCCACGGG-CCCATGCCACTTGCGTGTGCATATACAAG-----TGAT
TTGATTTTTTATTTAGCACATTAAATTTATTTTATT------------------------TATATAAATACAAGAAACTT
GAGCTTGATGAATGTTTAAAATTATGTTTTCCTAATATATCGTATTTTAAGATGCAATG-AATGTAAAATTTGTATGTCA
CTTTTGCACATGGCAAACACATGCTTTAATATGCCACAAAAATATGATCATTATGTTGCCGGATTATAGTGTACAAACCT
TTCTGCCAGGAACCGTTAATCAATGAATGATGGTTTTCTCCTCTCCTCTCCCCTATCCTCCTCCCCCTCACCCTCAAACG
CGGTGGCTGTCGTCGGTCTCGCCCCTCCTTCTTCCTTCCCTCTC------------------------------------
--------TGCCTTGCCGTGCCCGGGCCGATGGGCGTCAAGTACCAGAACATTATCTTTGGCAGACCGAATGTCTGGGCC
TTGTGTTCTAGCGCATTTGTAGTCCACGGGCCCATGTCAGTTGCGTGTGCATATACAAGAGAAGTGATTTGATTTTTT-A
GCGCATTAAATTTATTCTGTTTATATAAATATAAGAAACTTGAGCTTGAGGAATTTATAAAATTATGTTTTTCTAATATA
CTGAGTATCATATTTTAAGATGCAGTGTCTTGTAAAATGTGTACGTCATTGTTACGCATGATACAAATGGTTGTACTTTG
GCATGAAATTGTGCAAACACATGCTTTAATATGCCATAAAAATATGCTCACTATATTGCCGGACTATCGTGTACAATTCC
TTTTGCCAAGGAAAAAATTCACCTCCCATGTTACATACA-----------------------------------------
------------
>chr1B_48
-----------------------------------------------TATCTTTCAGACGTTCTTCAAGGATCACATGGG
CGTTGATCTGTACATGGAGCCGAATTTTGAAGACTACAGCTGCCAGGTAGAA-------TAAATTCAGGAA---TGCATG
TATTGCTATGCTAAAACAGAAATCTCGCGGGCATGCTCGTG---TTTATCCCTTTTCACAACCAAATGCCACCAA-----
----------TAACGAT-GCTGCTCATTGCAGTTCAACTTTGGAGTGCCACCCCCACCTCTCGACACCGACAAGGCCCTG
CAAGAACCCTGCTTGGACATTTGCACAAACGCGAGACGGCGCAGAGAGCTTGGCAGCAGCGGTGGCCCGGATGGTCTATG
CCCCCAAGTTTGATCTGCTGCTTCTGAAAGGACGCACATGATAAC----TAAAATGGTACGAA--TATTAGATATG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATGCAGCAATGGTGCTGCCCCTGCTTCACCTGGGGCTACACTAGAC----TGAAGATGGATTT
GTA---------------------------TGCGGGCTGGGCCGCCTTCTTCCCTAGCTGAACTGTATAGCATGATCTGC
ACATACACGCCACATGCTGCGTGCATGGGTTTAATTGGGATGTATGCAACCTACTA-------TAATTAGAATAACGAAG
T----------------------------TGAATCTCGTATTGTCTGCTTGTACAAGCAAAGCAAAGAATTGGCACTTCC
C-------------------------------------------------------------------------------
------------------------------------TGATGTTCTGTCGTCTTTATCGCTGACGGAAGCTACGTATATAC
---CTGTGTGTAAGCGTACAT-----------------------------------------------------------
------CATTGAGGGATCCT---GTTCTCAGATTTG--TCCTTGCGTGTCCATCTCATCGTCGTC----------TCCAA
GCTGGCATTC--TGAGTTTAGATTCCATTCTGCCA--CTATATGTAGCCGGACATGCAGTTCTTGGCTATCGCGACACAG
CGCGTGCACTGTTCCATCGTTCAGGATGCCTAGAGAGCGGCCTTTTCGCATGCCCGGCGGCCGTGGC-------------
--GGCGGCGGCGACATCACGGTGCACGTCGAATACCTGGCGCGCACCCTGATGCAGAAGCAGGAGGGCGTGGCGGCGGAG
GAGCAGCACCGGGCCATGGCGACCAGCCACCGGCTGTCCCGCGTCCCCCTCCACCTCCGCAACAACAACGCCAAGGACTA
CACGCCGGGGTTCGTCGCCATCGGCCCGCTCCACAGCCGCGACGACCGGCGCCTCCGCCCCGCCGAGCGGCTCAAGGTGG
CGTACCTCAACAGCCTCATCTCCCGCGGCCACCCCGACACGGCGCAACACCTCGCCGTCATCCAGGAGTACATCCGCGTC
GTCGCCGCCCGCGAGCAGGAGGCCCGAGCAATGTACGTCGGGGAGGACGTCGTCGAGATTCCCCCTGATGAGTTCATCCA
GATGATGGTGCTCGACGGCTGCTTCATCATCGAGCACCTCATCAACGTCGCCACGGGCCACGAGGAACCGTCGCTGCACG
CCACGCCCTTCGGCCCCGCGCAGCTCTCCGTCGATCTCGTCCTCGCCGAGAACCAGATGCCCTTCTTCCTCCTCGTTGAT
CTCATCGCCAGAACTAAGCTGCCGGAGTTCGAGGCCACCGGCTACCCCGCGCCGGTGCTGCTCGTGAAGCTCGTGCTGTA
CTACCTGGCCGGCGAGAAGGGCCGCGACATGAGCGAGGCGCTGCCGCCGGCCGAGGGGGTCTCCCACGTCCTGCACCTGC
TCCACGCGATGATCACCGCGGCGCGGACACGGTGGGAGCCGCCGCCCCGCACCATCCAGGACGGCGTGGTGATAGAGACG
GCACAGGAGGCGGCACGGCTGCTGCGCCGCATCCCGCTGCTGCTGTTCGTGCCGCTGCTGTACCCGATCCTCCCCGAGGA
CAAGAAGTGGAGCGCGAGCTACGGGAAGGAAGACGTGCCGTCGGCGAGCGACCTGAAGCGGATGGGCGTGCAGTTCAAGA
AGGCGCGCGCCGGCAGCGGGAGCAAGGCGCTGGCCGGCATCGCGTCGGTGCTGGGGCCCGTGCCGCTCGCCGTGAAGCTG
ACGCAGCACGAGGACCGGCTCCACCTCCCCCAGCTGCGGATCGAGTTCCGCACGGCGCCGCTGCTGCTGAACCTGATGGC
GTTCGAGCAGTCGGCGTCAGCCTCGATGAAGACGCCGATGGACGTGTCGGCGTACGTGTGCTTCATGGCGAAGATGGTGC
AGTCGGCGGAGGACGCGGGGGTGCTGGCGGCGGCGGAGGTGGTGCAGCAGCACGGCGGCGCGGGCAACGAGACCAAGGAG
GCCGTGGCGAGGTTTTTCCGGACGATGGGCGTGGCGAGCGAGGCGGCGGCCGGCGGCGAGCTGCTGGTGACGAGCTACCT
GTGCGTGCTGCTGGAGAAGCTGCGGGAGCGGAGCCGCCACCCGCTGTACGTCATGTGGGCCGACGTGCAGCGGAACTACT
TCACGCTGCCGTGGGCCGTCGTCATCGAGGTCGTCGCCCTCGTCACCTTCGTCTCCACCATGGTCCAGACCTACACCTCC
GTCAAGTACCACAGCTGAAATGCACCACCAGTCCACAGCGT--------------GTCCATAATCTTTGCCAGACTGACT
GTTTGGGCTC-GTGTTCTCCCACATTCT---AGCCCACGGG-CCCATGTTCCTTGCGTGTGCATATACAAGAGGAGTGAT
TTGACTTTTTATTTAGCATATCAATATTGTTTTATTTTATTATTGAGAAAACATTATATTTATATAAATATAAGGAACTT
GAGCTCGATGAACGTTTAAATTCTTTTCTTCTAAT---------------------------------------------
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-----TATCATATTTTAAGATGCAATGTCATGTAAAATGTGTACGTCATGTTTACACATG--------------------
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>SNPs
-----------S--S-----S--S-S-----S--------S-S-S-----------------------------------
----------------------------------------------------SSSSSSS--S-S----------------
---------------------------------------------------------S--------------S-------
--S---------------------------------------------------------SS------------------
--------------------------------S-----------------------------------------------
--------------------------------------------SSSS-----------S-----------------SS-
SSSSS-SS-SSSSSSSS-S-SSSS-S---SS---S-----SS--------S-----------------------------
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-------------------------------------------------S------------------------------
---S-------------------S--------------------S------------S----------------------
---------------------S----------------------------------------------------------
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-S----------S-------------------------------------------------------------------
--------------------SSS------------------------------------------------SSSSS----
----------S---------------------------------------------------------S-----------
--------------------S--S---------------------S-------------S--------------------
----------S---------------------------------------------------------------------
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-----------------------------------------S--------------------------------------
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------------------------------------------------------------S-------------------
----------------------------------------------------------------------S---------
---------------------------------------S-------------------------------S--------
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S-------------------------------------------------------------------------------
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----------------------------SS-SS-SS---------SS----S--S-----S-------------------
----------------------------SSS----------S--------------------------------------
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---------------------S--------S---------------S------------S--------------------
S----------------------------------------SS-------------------------------------
-----------------------------S--------------------------------------------------
----------------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------S----S--------------------------------------S--S-----------S-----
-------------------------------------S--------------------------------S-------S-
----------------S-S------------------------------S----S-S-----------------------
-------------------------S------------------------------------------------------
---------------------SS---------------------------------------------------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_1464
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----TGCACTGTTCCATCGTCCAC--------------------------------------------------------
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>reverse_3070
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-----------------------------CGCACCGGAGTGTCAAATAC-------------------------------
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