>input_sequence_47353
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-----------------------------------------------------------------------ACAGCTGAG
AAGCATTTCATTCCCAGCTTGCAGGAGCTGACATAGGTAGCTAGCCCCT--------------------GAAGAGGTGGA
TCATGGCAAAGCGTAACGAGCT------GTCTCTCTTGGTGCTCGTGGCCATGGCCGTTGTCGTCTTC---CTCTCCGTG
CAGGTGAAGTCGGAGGTGGCTGCCGGCAGCTACACCACAGAGATGCAGGAAGCTGTGAGGAATGAAGTGAAGGCCTTCCC
CGACCTCCGT------------CCCGGCCTTATCCGGCTCTTGTTCCACGACTGCTTTGTCAATGTGAGT----------
---------------GAAGATACTTTTGGCATTATTGCAGGGGCCTTGCTTTCAAATTCAGTTTTTTTTTTCCTGTGTTA
AAACGATTCAGTATACCACCTTTGTTATTTGAAAATCATTTTTGTT----------------------------------
ACCGTAAGCTGAGCCACAACATCACCATATATT---AGGGTTGCGATGGATCCGTGCTGCTGGAGACCTCGCGCATCAAC
GGCACCGATGGGAAGACGGAGATGACGTCGGCCTTCAACGGCGGCCTCCGTGGCTTAGAGGTGATCCAGAACATCAAGAA
GAACCTCGGGACCAAATACAACATCACCTGCACCGACGCCGTCATCTACGCGGCGCGCGAGGCGGTCTACCTGCTGAGCA
AGGGCAAAATCGCCTACAACGTCACCGGACCGGGCCGCATGGACGGCGTCATCTCCAGATCAGAGGACCCGGCAAAATTC
CTTCCAACCCCCAGCTTCACCTTCGACCAGCTCAAAGAAAGCTTCCGGAACAAGAGCTTGAGCACGGACGATGTCA---T
CGCCCTCTCCGGCGCGCACGCGATAGGCGTCGCTCACAGAATGTTCGTCGACGTCAATACTCTTGATACCCCCGTATCGT
ACCAAAAGGCCGTCGCGGTCGAACTGAGTAATGGTACGGACGTGATCAAGAACAACGTCCGCGACTTCGGCGCGG-----
----------CCTCCGGTTACATGGACAACAACAAGGAGAGAATGGAGGCGAAGGGCGTCCTGGACAACAGCTTCTACAA
CGCCATCAGCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGCTGTGGGAGGGCGCCAAGGCCAAGGTGACCGGCTATA
AGGATAAAGCCGACACGTGGTACATAGAGTTCGGCAACTCCATGGAAAAGCTCAGCAAGCTCCCCGCCACGAGCGACCCT
TCCAAGATCGAGATCAGGGAGGTGTGCAGTAAGACCAACTAGAGGCGCCACGACTAGACGCTCCTCGCCAAAATTTGGAA
CGAGACAAAACATGCTCGCGTTTATTCATTA-TATATTTATTGATTATTATTTATATATTATTATCCTTTTCTAAAAAAC
TTATATATTATTATGTCGGCA-GTATATTATTGTGAAAA--AAACATGTGGACCGGTGTTTATTTCCTTTGGTTTGACTT
ACTTATTTGTAAAT---------------------------------------------TTTGTATACATGTCTCCGA--
ATAGGTGTGGTTTTGTAATCGTCCACGCAGTTATCCTACCGCAATAACCATGACAATTGCTCTAAAAAAATAACCATGAC
AATTAACTAATTGAC----------------------------------TGGACTATTTGGAGAACTTTCAAAAATTCAA
AATGTTTTGATAGCTCAAATCATCGGTCCAATTAAA--------------------------------------------
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>chr1D_1_TraesCS1D01G080000
TTTTACACACATATACATTTCATCCTTATATACTTGCATTTTTTCAGATTTTCTTTAAAACTAGAAAGTTTGAATTTAGA
ATTTTACAAAAATAAAGGGCTCCTTGGAGCCCAGTCACCAAAACGCCCTACTCCTTGGAGTCTGTTCGGTGTCATGAGAT
GATTGATGCGGATATAGTCATTGTTGTAGTTTGTTGATTGTAGATCAGATCACTTTGGGTTTTTCTTTTTTCTTCCCCTA
CGCATAACTTTGGTCGTATATAACTTTGCTATTTATTGGTGTGTTTTTGTGTGCATGTGATGTTGGTTGTGTGTATCTTA
ACTATACAGTGTGTTTGCATCCTCTTGATGCCCCATTTCACATTAATTAAATCCACCCCTAGTTGAAAAAGCCAGATGAA
ACAATAGAATTGATTAAAGCTTCCTTAGTCATTTTTTTAGCAAATCTATTTTATTTTATGAAAAACATCGAATGGCTAAT
TAATTTTTTT-ATCATTATTTTGCTAGTCCCCATTGAATCATCCGACTCTTCATCTTCTCATAAAAAAAAGGATATCATA
GCTCCAACTTCCTTCAGATGCCTGGCCTCGATATATTTGTCTTATTTTCGCCTGAACTAAACTTTTGCAATAGGACTCCA
TGATTATTGGGATGTCG-ACCATGTGCATCAGCTTGGATGATAAACATCCAGCGCGCGTAAATTGGAGAAACAAGAGAGG
TTGACATAAGTATGCAACTATGCAAGTTGATGCGAAATGCCTGGCTGGAATTCCAGACAGCTTGGACACATTGAGACGAC
CACGTTAATTC-------------------------AATTCGATTGATCGGGGCTGAAGAAGATTAG---CACTAAGTGC
ATAATTGCCGTGCACGTTCGACCGATCTATATCTTGATCCGTAACCCAGTTATTTATCAGCAGCACGGATCGCAAGGCGC
ATAAATAACTGCCGTGCTTACGTCATTTAGCCGTATATAAATACACCC-GTTCACCACAACTAAATCATCCACAGCTGAG
AAGCATTTCATTCCCAGCTTGCAGGAGCTGACATAGGTAGCTAGCCCCT--------------------GAAGAGGTGGA
TCATGGCAAAGCGTAACGAGCT------GTCTCTCTTGGTGCTCGTGGCCATGGCCGTTGTCGTCTTC---CTCTCCGTG
CAGGTGAAGTCGGAGGTGGCTGCCGGCAGCTACACCACAGAGATGCAGGAAGCTGTGAGGAATGAAGTGAAGGCCTTCCC
CGACCTCCGT------------CCCGGCCTTATCCGGCTCTTGTTCCACGACTGCTTTGTCAATGTGAGT----------
---------------GAAGATACTTTTGGCATTATTGCAGGGGCCTTGCTTTCAAATTCAGTTTTTTTTTTCCTGTGTTA
AAACGATTCAGTATACCACCTTTGTTATTTGAAAATCATTTTTGTT----------------------------------
ACCGTAAGCTGAGCCACAACATCACCATATATT---AGGGTTGCGATGGATCCGTGCTGCTGGAGACCTCGCGCATCAAC
GGCACCGATGGGAAGACGGAGATGACGTCGGCCTTCAACGGCGGCCTCCGTGGCTTAGAGGTGATCCAGAACATCAAGAA
GAACCTCGGGACCAAATACAACATCACCTGCACCGACGCCGTCATCTACGCGGCGCGCGAGGCGGTCTACCTGCTGAGCA
AGGGCAAAATCGCCTACAACGTCACCGGACCGGGCCGCATGGACGGCGTCATCTCCAGATCAGAGGACCCGGCAAAATTC
CTTCCAACCCCCAGCTTCACCTTCGACCAGCTCAAAGAAAGCTTCCGGAACAAGAGCTTGAGCACGGACGATGTCA---T
CGCCCTCTCCGGCGCGCACGCGATAGGCGTCGCTCACAGAATGTTCGTCGACGTCAATACTCTTGATACCCCCGTATCGT
ACCAAAAGGCCGTCGCGGTCGAACTGAGTAATGGTACGGACGTGATCAAGAACAACGTCCGCGACTTCGGCGCGG-----
----------CCTCCGGTTACATGGACAACAACAAGGAGAGAATGGAGGCGAAGGGCGTCCTGGACAACAGCTTCTACAA
CGCCATCAGCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGCTGTGGGAGGGCGCCAAGGCCAAGGTGACCGGCTATA
AGGATAAAGCCGACACGTGGTACATAGAGTTCGGCAACTCCATGGAAAAGCTCAGCAAGCTCCCCGCCACGAGCGACCCT
TCCAAGATCGAGATCAGGGAGGTGTGCAGTAAGACCAACTAGAGGCGCCACGACTAGACGCTCCTCGCCAAAATTTGGAA
CGAGACAAAACATGCTCGCGTTTATTCATTA-TATATTTATTGATTATTATTTATATATTATTATCCTTTTCTAAAAAAC
TTATATATTATTATGTCGGCA-GTATATTATTGTGAAAA--AAACATGTGGACCGGTGTTTATTTCCTTTGGTTTGACTT
ACTTATTTGTAAAT---------------------------------------------TTTGTATACATGTCTCCGA--
ATAGGTGTGGTTTTGTAATCGTCCACGCAGTTATCCTACCGCAATAACCATGACAATTGCTCTAAAAAAATAACCATGAC
AATTAACTAATTGAC----------------------------------TGGACTATTTGGAGAACTTTCAAAAATTCAA
AATGTTTTGATAGCTCAAATCATCGGTCCAATTAAAGATTTGTTTTCACCACTAAATGTGTCACGAC--AGACTTTCAAA
AGTATACTCAATATTGATATATTCTGATGATTTTATTTCGGGTAAAGAATTACCCAGCTGCAATATACAAGTTGCCAACC
TATTCGCACAGGCATGAAAAATAAAACCTTTTTTTGAAACATTTTAATCATTTTTATAGGTTGGGAGTTATGATCATGTA
CCATAAGAGTTATCATTACCAAGAACAAAATATTGTGTTCTTGGTTTGTCATTACCGATAACATTATGTGCGTTTGTCGG
AATACTCATAGATAGTTAATTATTGACTACAAAACTAGACCTCACTACGACTGTTCATACTAGATAATACCCCGCGGGTT
GCAGCGGGACTTTATGCTTCTCAATTGATGCAAAGTGAATTGAAATATCATGCGATAATTCAAGTGCTTACTGACAACAT
ATGCCTTGCTTCTTAATTATTTGAGCAAATTTGTAGATCATATTTCTCTTCAATTTTCGTTAGTGACAAACCAAGAACAA
AATCAGACCCTTGTGAGCAACTTAGTTGTGCCATTCCATTGCACAATAGTACGATATGTGCACAAAGTTCCATTACAATT
GATTATTACCCGACACTCCAGAGTACACAATATTCTCTGTAAAAATGGTTTCCTCTTGCTTAATCTGCAACAGGAAACTG
CAGCTATTGAAAACTTAATGAATATGGAAAGAATACTCGTAGATAGTTATTGATTACAAAACTAGACCTCACTACAACTG
TTCATATAACTACATCAGAGTATTTGACAAAAAACTACCACATTTCACGTCACCGTCCCACAGAACTACCACATTTTAAA
AAGTGACCGAAAACTCCAGATTAGTACTAATTTTGTGGAAAAAAACTACCAAGTTGAGTTGATGACCGTTTTATGATTTT
AAACCTGTTTATGACATGCGGGACCCGCGTGTCAGAGCTGACGTGGCGGAAAAGTCAACTCTGTTTATTTCGACAGTT
>chr1B_305
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----------------------------------------------------------------GGTTGTGTGCATCCTA
GCTATGCAGTGTGTTTGCATCCTCTTGATGTCCCATTTCACATTAATAAAATCCACCCCTAGTCGAAAAAGCCTGATGAA
ACAATAGAATTGATTAAAGCTTCCTTAGTCATTTTTTTAGCAAATCTATTTTATTTTATGAAAA-CATCGCATGGCTAAT
TAAATTTTTTGATCATTATTTTGCTAGTCCCCATTGAATCATCCGACTCT------------------------------
---CCAACTTCCTTCAGATGCCTGGCCTCGATATATTTGTCTTCTTTTCGCCTGAGCTAAACTTCTGCAATAGGACTCCA
TGATTATTGGGATGTCTAACCATGTGCATCAGCTTGGATGATAAACATCCAGCA----TAAATGGGAGAAACAAGAGAGG
TTGACATGAGTATGCAA--------GTTGATGCGAAATGCCTGGCTGGAATTCCAGACAGCTTGGACACGTTGAGACGAC
CAAGCAAAAGCATAGGCGGCGGCAGCTCACCATGTTAATTCGGTTTATCGGAGCTGAAGAAGTTTAGCACCACTAAGTGC
ATAATTGTTGTGCACGTTCGACCGATATCA------ATCCGTATCTTAGTTAACTATCAGCAGCACGGATCACAAGGCGC
ATAAACAACTGCTGTGCTTACGTTATTCAGCTGTATAAATACACCTGTTGTTCACCACAACTAAATCATCCACAGCTTGC
AAGAAGTAATA--------------------------TAGCTAGCCCAGTTTTTGCGAGTCCAAAAGCAGAAGAGGTCGA
TCATGGCAAAGCGTGACCAGAAGGAGGCGTCTCTCTTGGTGCTCGTGGCCATGGTGGTCGTCATGGTCGTTCTCGCCGTC
CAGGTGAAGTCGGTGGTGGCGGCCGGCGAGTACACCGAGGCCATGATGAAAGTTGTGAGGGAACAAGTGAATGCCGTTAA
CTTCACCGGAAACGACGCCCGCCCCGGCCTCATCCGGCTCATGTTCCACGACTGCTTTGTCAATGTAAGTAATTGAAGAT
ACTTCGCCGCAAAAAGAAGATACTTTTTGCAATTTCTCGCGAAAAAATGATACTTTTGGAATATACGT------------
-----------------ACCGTGGATATTTGAAAAACTCTTTTGTTGATGTAACAACAGAATTCTACGTACCGAACTTAG
AGCGTAAACTAAGCCATAATATCACGTCGGTATGTCAGGGTTGTGATGGATCCGTGCTGCTGATGACCTCGCGCGAAAGC
AGCGCCGATGGGACGACGGAGAAGGACTCGGGCTTCAACATCGGCCTCCGTGGCTTCGAGGTGATCGACAAGATCAAGGA
GAAGCTCGCCGACTACAAGG---TCACCTGCACCGACGCCGTCATCTACGCGGCGCGCGAGGCAGTCTACCTGCTGAGCA
ACGGCAAAATCGCCTACAACGTCGACGGGCCGGGCCGCAAGGACGGCGTCATCTCCAGATCAGAGGACCCGGAAAAATAC
CTTCCAACCCCCAGCTCCGACTTCGCGGTCCTCGTGAAAAAGTTCACCGACAAGGTCGTCTTCACTGAGAAGGATGTCGT
CGCCCTCTCCGGCGCGCACGCAGTGGGCGTCGCTCACAGCACGACCATTAACGTCAC------TGGTACCCCTGAAATGT
ACCAAACGGCCGTCGGCTGGGAAACATTCAAGGATCCAAATGCAGTTAAGAACAACGTCCGCGAGTACGACGGCGGCCCG
CTGAAGATCTCCTCCGGTTACAAAGACGACAACAAGGAGAGAATGGCGGCGAAGGGCGTCCTGGACAACAGCTTCTACAA
CGCCGTCCTCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGCTGGGGGTGAACGCGGTGACCAAGGTGAGGGAGTACA
TGAATAATGCCGGCACGTGGAACAACGACTTCGGCAGCGCCATGGAAAAGCTCAGCAAGCTCCGCGCCACGAGCGACCCT
TCCAAGATCGAGATCAGGAACGTGTGCAGTAAGACCAACTAGAGGCTCCTCGAG---------------AAAATTTGAAA
CGAGGCAAAACATGATCGCCTTTATTCATTATTATGTTTGTTGATTT-------------------------------AC
TTATATATTATTATGTCGGACGGTATATTATTGTCAAAAGAAAACATGGGCACCGGTGTTTATTTCCTTTGGTTTGACAC
ATGCTCCTCCGTTTTAGTGATCTAAACGCTTTTATATTAGTTTACGGAGGGATTACTTATTTATATACGTGTCTCCGGAT
ATAGGTGTGGTTCTGTAATCGTCCACCCAGTTATCCTACTGT--------------------------AATAACTATGAC
AATTAACTAATTGATTGCATGTTGACTTCCCTAAAAAAAACTAATTGAGTGGACTATTTTGTGAACTTTCAAAAATTCAA
AATATTTTGATAGCTCAAATCATCAGTCCAATTAAAGATTTGTTTTCATCATTAAAATTCATCACGACAAGACTTTCGAA
ACTAGACTCAATATTTGTATATTCCGATGATTTTATTTCGGGTAAAGAGTTACCCAGCTGCAATATACAAGTTGTCAACC
TATCCACACAAGCATGACAAATAATTTTGTGTGTGC-AACATTTCAATCATTTTTATAGGTTGGGAGTTATGATCCTGTA
GTATAAGAGTTATCACTATTGTTCG--------------------------TTACCGATAACATTATGTGCGTTTACTAG
C-------------------------------------------------------------------------------
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-----------------------------------------GATAGTTATTGATTACAAAACTAGACCTCACTGCAATTG
TTCAT---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S--
S----S------------------------S----------------S---------------S---------S------
----------------------------------------------------------------S-----S---------
---S----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------------------------------S-----------S--------S---------------
----------------S------------------------------------SSSSS-----S----------------
-------S---------SSSSSSSS--------------------------------------------S----------
--S-SS--SS--------------------------------S--S-----S----------S-----------------
-------SS-----------------S-SSSSSSSS-------S-SS-----SS-----------------S--------
-----S------S----------S---S---S-----S-S-S--SSSS-----------------------------SSS
---S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS----------------------------S--
--------------S--S--SS--------------------------------SS--S---S-SS--------S----S
-------------S------S------SSS------SSS-SS---SS-S---S-------S-SS-------S---S-SSS
-SS-SS-S-S--------------------S---------S-------------------------S-------------
---------------------------S---S-S-SS-SS-SSSSSSSSS-S-SSS-SS-S-S-SSS-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---S-S-S----------S-SS-----------------------------------------
-S-----S--S-----S--S-----SSSSSSS-----------S------------------SS----------SSS-S-
S--S---------S--------S-SSS----S-------SS---------------S---------S-S--S------S-
---S----SSSS-S-SS-SSSSS----------------------------------------S----------------
-S---------------------SS---S----------S--------------------------------S-----S-
----------------S-SS-----SSSSS---SSSS---SS---SSSS-----SS-S-SSS---S--SS-S-SSS----
---------------------SS-S--------------S-S-SS-S-SS------SSSSSSS--S------S-S-SS--
------S--------SSSSS---SSSSSS--S-S-S-SS-S-SSS-S-----------------S-S--S--SS------
----------------------SS---S------------------S---------------------------------
----S--SS-------------------------------------S---S-SS---SSS-S---------SS-SS--S-
S-S----S----S-------S---SS--S-------S-S------------------------S----------------
------------------S-S-------------------------S--S---SSSSSSSSSSSSSSSS--------S--
----S---------S----S---------------S---S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------------------SS-------------S-------------S-S---------------------------SS
-SSSSSS-SSSSS-------------------------------------------------S-----S--------S--
------------S-------------S------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----
--------------S--------------------------------------------S-S------------------
---S--------------------S-----------------------S--S----SS-SSSSSSSS----------S--
-S--S----------SS-------S-----------------------S-------------------------S-----
---S-S----S------S------SSSSS-S-S-SSS-------S------------------------------S----
SS-------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------SSSS-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S---S--
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_134
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----------------------------------TCACCAAAACGCCCTACTCC--------------------------
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>reverse_1048
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-------TCATTCCCAGCTTGCAGGAG-----------------------------------------------------
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>forward_135
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-----------------------------------CACCAAAACGCCCTACTCCT-------------------------
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>reverse_2044
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-------------------------------------------GATCAAGAACAACGTCCGCG-----------------
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>forward_1410
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------------------------------ATTATTGCAGGGGCCTTGCT------------------------------
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>reverse_3448
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-------ACCCGACACTCCAGAGTACA-----------------------------------------------------
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