>input_sequence_47287
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------------------------------------------CCTCGCCCCGCCGCCGCCGCCGCCGCGGCCACGACCGG
ATCTCGTCCTCCTCCCGGCCCAGCAGAGGGCGATGGCGGCGAGGGCGCTTGGGCTCGCCGGCCGAGCGCTCCTGCGGCCG
CTCTCCTCGCCGGGCGCGCAGCGGCTGCTGTCCAGTGACAAGGTACGCTCACCAGCTCCCCATCCCTCCCTCCCTTCCAT
TGCATTTCCCCGCAAGAAACCCGATACAGATCCATCTAACTCGCAACACGATGGTAGCCAGGTAGACTGAACC-------
AAATCTTGAACTGAAACAGACAGATAGGACAGATTCGTGAGCTAGGCAAGTGTGCGCATGCTTCCCACCAATTCAACTGC
GATGTAATTTCATTTCGTGGGGAATGATTAGG---------CAGAGGTGTTCTTGTCATCATAAATTCCTTTTTTTTTAC
TGGAGTACTCCCTCTGTAAAGAAATATAAGAGCATTTAGATCACTACTTTCTTTACGGAGGGAGTACTTTCCTAAGGGTG
CCGGCCCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTTAGCCCAGTGCTGCTGATGTTGTTGACCACAAGTGCTT
GCTACTATAGCCATGAATCTTATTGTGTGATCTTTATTCTTACAGCCGCATTGATATATACAGTCATTGTCTCCTGCCTT
TTCCCCAGTTCTGCCTGGACACGAACAGAGTGGTCCATGTTG-TTATCTGGTGCTTGACACGATTTGTATCTCAATTTGT
GCTCTTGCAGGGCCCACTGGAGGGCCTCGTGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGGCGGCGGTTTTTCCCCTCAATTCGCTGAGAACGGGTTCACAGCAGGTGGTTTCAGGATGGGTGGT------------
------------------------AATGGATTTACAGC------------------------------------CGGTGG
TGGCAGGATGGCTGGAAACGGATTCACAGCCGGTGATGGCAGGATGGGTGTAAACGGATTCACAGCCGGTGATAGCAGGA
TGGGCGGAATTGGATTCACAGCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGTCGGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTGAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACAGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGCTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCCGGTGAAGCAACAGGGGAGCACATGGGGCGAGTCGCCAGCAAGATTGGCCTCAAGTCG
GTCGTCGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGTTTCCGGGG
CGAAAGAGTGAGGACCCCGTCTCCTATCATGTACGTCCACGACGTGACCCAGCTCGCGCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAGTATCCTGTC-CCAAGGAGAAACAAA
TTAAGAACGATATGTATGTATCGACAGGTTTTGTAATAATGTCATGAGCCTGGA--------------------------
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----------------------------------------------
>chr2B_1_TraesCS2B01G611800
AAAATGTCTTTTTCAGAGCTAGCCAAGTCTAAAATCCAGAAACTTCACATCTGCAATTTAAATGCCATGCATAAACATCA
CGAAATCACACACAATTAAATGGCGTGCTCCTTGTTCATCTGCGATTGACTGTCCTCCTAACCATCCTACCACAGGTTGG
TTAACAATTAGATATCAAATTTATTAGTTGTTTTTCATGTGGATTTTCTAGTGTAATCTACTGACTTCCTTCAAATGGGA
GTACAAATAAAGATCTTACAATCCGTAAATATTCATATGAAAAAGAAGAGAGAACATTAGAAAAAGCAATATAATAAGCA
AAGTGTTGAGCTCGGCTGAACAGTAAAACAATATTTTTTTTTAGAAATTTCTGATTTTTTGCGTGTGAAATATTAACAAT
TTTTTTCATAGCTTGCAAATTTTCATCATGGATGACATTCATGGAAAATGTGGCAAAGAAACAAAAGTGATGCTCCAAAA
TGCGTTTGAAAATAGAATTTGGAGCATCGACTCTGTTTTGTTTTTGTCACGATTTCCATGATGCCACATGGTGATGAAAG
TTTTGAGGCAAAAAAATCATTTTATCCATGTTTCACACAAAAAAAAAATCAGAATTTTTAAATCTATCAACCTTTTTGGT
TTGATTTTACTGTTCACCCAAGCTCACATACCTCGGGACTAGAACAACCGCTTACATATAATAATAAATATCAAGTCAAA
TGTTACAAATATAGTTATAATTACAGAGCTCTCCTTGGTCAATGGTCAACCTACACAACACTGATAGCTAGAAAAAAAGT
CAGGTTTTTAGGGAAAAAAAGTCAGAACATGTTTATTTAGAAGCAAAAAAAAAGTCTGAACATTTGATATTTGTTTTGTG
TGTGGACATCTGAACATTTGATGTGACCATGTGGGCCCTAAACGGTAGTCAGGTCCAGTTAAAGCCCAAGA--GAAAGAC
GGCCTAACCCAAACGAGAGACGCACTCGAATCTTCGCAACAGCCTCGCCCCGCCGCCGCCGCCGCCGCGGCCACGACCGG
ATCTCGTCCTCCTCCCGGCCCAGCAGAGGGCGATGGCGGCGAGGGCGCTTGGGCTCGCCGGCCGAGCGCTCCTGCGGCCG
CTCTCCTCGCCGGGCGCGCAGCGGCTGCTGTCCAGTGACAAGGTACGCTCACCAGCTCCCCATCCCTCCCTCCCTTCCAT
TGCATTTCCCCGCAAGAAACCCGATACAGATCCATCTAACTCGCAACACGATGGTAGCCAGGTAGACTGAACC-------
AAATCTTGAACTGAAACAGACAGATAGGACAGATTCGTGAGCTAGGCAAGTGTGCGCATGCTTCCCACCAATTCAACTGC
GATGTAATTTCATTTCGTGGGGAATGATTAGG---------CAGAGGTGTTCTTGTCATCATAAATTCCTTTTTTTTTAC
TGGAGTACTCCCTCTGTAAAGAAATATAAGAGCATTTAGATCACTACTTTCTTTACGGAGGGAGTACTTTCCTAAGGGTG
CCGGCCCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTTAGCCCAGTGCTGCTGATGTTGTTGACCACAAGTGCTT
GCTACTATAGCCATGAATCTTATTGTGTGATCTTTATTCTTACAGCCGCATTGATATATACAGTCATTGTCTCCTGCCTT
TTCCCCAGTTCTGCCTGGACACGAACAGAGTGGTCCATGTTG-TTATCTGGTGCTTGACACGATTTGTATCTCAATTTGT
GCTCTTGCAGGGCCCACTGGAGGGCCTCGTGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGGCGGCGGTTTTTCCCCTCAATTCGCTGAGAACGGGTTCACAGCAGGTGGTTTCAGGATGGGTGGT------------
------------------------AATGGATTTACAGC------------------------------------CGGTGG
TGGCAGGATGGCTGGAAACGGATTCACAGCCGGTGATGGCAGGATGGGTGTAAACGGATTCACAGCCGGTGATAGCAGGA
TGGGCGGAATTGGATTCACAGCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGTCGGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTGAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACAGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGCTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCCGGTGAAGCAACAGGGGAGCACATGGGGCGAGTCGCCAGCAAGATTGGCCTCAAGTCG
GTCGTCGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGTTTCCGGGG
CGAAAGAGTGAGGACCCCGTCTCCTATCATGTACGTCCACGACGTGACCCAGCTCGCGCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAGTATCCTGTC-CCAAGGAGAAACAAA
TTAAGAACGATATGTATGTATCGACAGGTTTTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTATTAGACAG
TCTTAGAT--TGGCGCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTGTTTTCATA
------------------------TCCCTCTCCTTTTGTGGAGCTCCTATGTAGTTACAGCACTGCAAGTGTATGTGTTG
AGAAGCTGCTAATTTCTTGTTTTTCAAGAAGTGAAAAAGTTTGAAGTCGCAGGTAATTTGGACGGGTTGCATCCCTCTTG
CACATTAAAATAATGTTCTGCTCTAATAGTTG-CTCTGTCCCCTTG-TTTTCTTTTTTTAACCGACAAGAAAA-ATTCTG
AGATTTTTATAGAATT-AAACTTTGTCTGTGATTCTTTC------A--AGCAAGACAAAATGCAAACTCA-------CCA
AAATATGCAGAACTCCCTTCATCATATTCCCTCTTCTCCTCTCACTAAAATTTCTCTGTTGA------------------
------GATCCCCTTTGCAGTTAACTAGAAGGGC-GAATTAGTAGGTGATTATTTAGAACTTAACTACTAGAATCTCTA-
TGTAGTTAGAAGGAGCGACTTCTCTG--ATTTTGTTGGTTCAGA--------GAAGAATGTAGTATTGTGAAGGAACTTG
GGG---------------AAGATTAATTGCAGCAAGGAAATCACTG----------AATCTTGACAGTATCATACACAGA
CCATGCATGGAATAGGAT-----------------------------------------------------------GAA
TGATTCCATGATTTTATTAATGACAGTGTATCACATATATATCGCTCAA-----AATTGCTACCAACTGCTTATGTTCAT
AATAGCAACGCCGAAAAAGAA----------GAAAGCATAGTTAATCCAGATTGCAACC-AAAATGTTGACAACACTGAA
TTTTCGTGCACACACTACTGCATCCAATCATTTGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAATCTTCA
TAAAGCTCCCAATCGATCATTTTTCCACCACGCCCATATACATCAATCGTCGGCATATATAAATAGCATCTCCAG-----
--CCCCAGCATTGTA---CTTCACAAAATGGTGACGATATGACGGA
>chr2A_909
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----------------------------ATGTGGGCACTAAACGGTAGGCAGGTCCAGTTAAAGCCCAAGAAGGAAAGAC
GGCCTAAATCACACGACCAGAAAATTCAATCGAGGGTTTCTCGT---------------CGCCGCCGCGGCCACGACCGG
ATCTCGTCCTCCTCCCGGC-CAGCAGACGGCGATGGCGGCGAGGGCGCTTGGGCTCGCCGGCCGAGCGCTCCTGCGGCCG
CTCTCCTCACCGGGCGCCCAGCGGCTGCTATCCACTGACAAGGTACGTTCGCCAGCTCCCCATCCCTCCCTTCCTTCCAT
TGCATTTCCCCGCAAGAAACTCGATCCAGATCCATCTAACTCGCAATACGATGGTAGCGAGGTAGGTAGGCAGGTGAAGT
GAATCTTGAAATGAAACAGAGAGATAGGATAGATTCGTGAGCTAGGCAAATGCGCGCGTGCTTCCTACCAATTCAACTGC
GATGTTATTTCATTTCATGGGGAATGAATAGAAGAAGAAAACAGAGGTGTTCTTGCCATCATATATGTCCTTGTTTTTTT
ACTG--------------------------------------------------------------CTGTTCTGAGGGTG
CCGG-CCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTAAGTCCAGTGCTGTTGATGTTATTGACCACAAATGCTT
GCTACTATAGCCATAAATCTTATTATTTGATCTTAATTCTTACAGCCGCATTGCTATATACTCCTGCT---------CTT
TTACCCAGTTTTGCCTAGACATGAACAGAGTGGTCCATCTTG-TTATCTGGTGCTTGATACAATTTGAATCTCGATTTGT
GCTTTTGCAGAGCCCACTGCAGGGCCTTGCGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGGCGGCGGTTTTTCCCCTCACTTTGCTGAGAACGGATTCACCGCAGGCGGTGGCAGGATGGGTGGAAACGTG------
------------------------------TTCACAGC------------------------------------CGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAGCCGGTGATGGCAGGATGGGTGGAGTTGGATTCACAGTCGGTGATAGCAGGA
TGGGCGGAATTGGATTCACAGCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGC---TGGTGGCAGGTCGGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACGGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGCTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCTGGTGAAGCTACAGGGGAACACATGGGGCGAGTCGCCAGCAAGATTGGCCTAAAGTCG
GTCGTCGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTCGCGGACGGTTTCCGGGG
CGAAAGAGTGAGAACCCCATCTCCTATCATGTACGTCCATGACGTGACCCAGCTCGCGCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGCGGAGATCAATATCCTGTC-CCAAGGAGAAACAAA
TTAAGAACGATATGTATGTATCGACAGGTTTTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTATTAGACAG
TCTTAGAT--TGGCTCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTGTTTTGATA
TGGCATGGTTGCATTGCATGCAGTTCCCTCTCCTTTTGTGGAGCTCCTATATAGTTACAGCACTGCAAGTGTATGTGTTG
AGAAGCTGCTAATTTCTTGTTTTTCAAGAAGAGAAAAAGTTTGAAGTCTTAAGTAATTTGGAAGGGTTGCATCCCTCTTC
CACATTAAGATAATGTTCTGCTTTAATGGTTGGCTCTGTCCCCGTATTTTTCTTTTTTTATCCGACAAGAAAATATTCTG
AGTTTTTTATAAAATT-AAACTTTGTCTGCGATTCTTTC------A--AGCAAGACAAAATTCAAACTCTG--TAGGCCA
AAATATGCAGAACTCCCTTCAT---ATTCCCTCTTCTCCTCTCACTAAAATTTATCTGTTGA------------------
------GATCCCTTTTGCAGTTAATTAGAAGGGT-GAATTAGTGGGTGGTTATTTAGAACTTAACTACTAGAATCTCTA-
TGTAGTTAGAAGGAGTGACTTCTCTG--GTTTTGAAGGTTCAGA--------GAAGAATGTAATATTGTGAAGGAACTGG
GGG---------------AAGATTAGTTGCAGCAAGGAAAACATATAATAGGATGTAATCTTGACAGTATCATACACAGA
CCATGCATGTAATAGGAT-----------------------------------------------------------GAA
TGATTCCATGATTTTATTAATGACAGTGTACCACATATATATCACTCAA-----AATTGCTACCAACTGCTTATGTTCAT
AATAGCAACGCCGAAAAAGAA----------GAAAGCATAGTTAACCCAGATTGCAACC-AAAATGCTCACAACACTGAA
TTTTGGTGCACACACTACTGCATCCAATCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAATCTTCA
TTAAGCTCCCGATCAATCCTTTTTCCACCAAGCCCAT-TCCATCCATCGTTGGCATATATAAATAGCATCTCCAG-----
--CCCCAGCATTGTA---CTTCACAAAATGGTGACGATATGACGGA
>chr2D_909
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----------------------------ATGTGGGCACTAAACGGTAGGCAGGTCCAGTTAAAGCCCAAGAAGGAAAGAC
GGCCTAAGCCATACGAGAGACGCACTCGAATCTTCGCAACAGCCTCGCCCT------GCCGCCGCCGCGGCCACGACCGG
ATCTCGTCCTCCTCCTGGCCCAGCAGAGGGCGATGGCGGCGAGGGCGCTTGGGCTCGCCGGCCGAGCGCTCCTACGGCCG
CTCTCCTCGCCGGGCGCCCAGCGGCTGCTGTCCACTGACAAGGTACGTTCACCAGCTCCCCATCCCTCCC----TTCCAT
TGCATTTCCCGGCAAGAAACTCGATCCAGATCCATCTAACTGGCAGTACGATGGTAACTAGGTAGACTGAATC-------
GAATCTTGAACTGAAACAGAGAGGTATGATAGATTCGTCAGCTGGGCAAGTGTGCGCATGCTTCCTACCAATTCAACTGC
GATGTAATTTCATTTCATGGGGAATGGATAGAAGAAGAAAACGGAGGTGTTC---------------------------T
ACTG--------------------------------------------------------------CTGTTCTAAGGGTG
CCGG-CCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTAAGTCCAGTGCTGCTGATGCTGTTGACCACAAAT-CTT
GCTACTATGGCCATGAATCTTATTGTGTGATCTTAATTCTTACAGCCGCATTGCTATATACTCCTGCTT---------TT
TTACCCAGTTTTGCTTAGACATGAACAGAGCGGTCCATCTTG-TTATCTGGTGCTTGATACGATTTGAATCTCAATTTGT
GCTTTTGCAGGGCCCACTGCAGGAGCTCGCGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGACGGCGGTTTTCCCCGTCACTTTGCTGAGAACGGATTCACAGCAGGTGGTGGCAGGATGGGTGGAAATGGATTCACA
GCCAGCGATGGCAGGATGGGTGGAAACGGATTCACAGC------------------------------------CAGTGA
TGGCAGGATGGGTGGAAACGGATTCACAGTCGGTGATGGCAGGATGGGCAGAATTGGATTCACAGCCGGTGATAGCAGGA
TGGGTGGAATTGGATTCACACCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGTCGGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCACCGCGAGTAAAGAGGGACGTTCTCCATGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACCGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCCTCAAGTCT
GTCATTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCAGACGGTTTCCGGGG
TGAAAGAGTGAGAACCCCGTCTCCTATCATGCACGTCCATGATGTGACGCAGCTCGCGCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAATATCCTGTC-CCAAGGAGAAACAAA
TTAAGAACGATATGTATGTATCGACAGGTTCTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTATTAGACAG
TCTTAGAT--TGGCTCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTGTT------
---CATGGTTGCATTGCACGCAGTTCCCTCTCCTTTTGTGGAGCTCCTATATAGTTACAGCACTGCAAGTGTATGTGTTG
AGAAGCTGCTAATTTCTTGTTTTTCAAGAAGTGAAAAAGTTTGAAGTGGCAAGTAATTTGGAAGGGTTGCATCCCTCTTG
CACATTAAGATAATGTTCTGCTTTAATGGTTGGCTCTGTCCCCTCATTTTCCTTTTTTTAACCGACAAGAAAATATTCTG
AGACTCTTATAAAATT-AAACTTCGTCTGCGATTCTTTC------A--AGCAAGAAAAAATTTGAACTCTTTATAGGCCA
AAATATGCAGAACTCCCTTCAT---ATTCCCTCTTCTCCTCTCACTAAAATTTCTCTGCTGA------------------
------GATCCCTTTTGCAGTTAATTAGAAGGGT-GAATTAGTGGGTGATTATTTAGAACTTAACTACTAGAATCTCTA-
TGTAGTTAGAAGGAGCGACTTCTCTG--ATTTTCTTGGTTCGGA--------GAAGAATGTAGTATTGTGAAGGAACTGG
GGG---------------AAGATTAGTTGCAGCAAGGAAAACACTG----------AATCTTGACAGCATCATACACAGA
CCATGCATGAGATGAGAT-----------------------------------------------------------GAA
TGATTCCATGATTTTATTACTGACAGTGTAGCACAT-TATATCAGTTACTCTAGAATTGCTAACAACTGCTTATGTTCAT
AATAGCAAAGCCACACACAAAAACTTAGACCGAAAGCATAGTTAACCCAGACTACAACC-AAAATGCAGACAACACTGAA
TTTTGGTGCACACACTACTGCATCCAGTCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAATCTTCA
TAAAGCTCCCGATCGATCCTTTTTCCACCACGCCCATATCCATCAATCGTTGGCATATATAAATAGTATCTCCAG-----
--CCCCAGCATTGTA---CTTCACAAAATGGTGACGATATGACGGA
>chr3A_1661
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------------------------------------------------------------------------------TT
TTTCCAAGTTTTGCCGAGACATCAACAGAGTGGTCGGTCTTG-TTATCCGGTGCTTGATACAAATTGAATCTCAATTTGT
GCTTTTGCAGGGTCCATTGCAGGGCCTCACGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGATGGCGGTTTCCCTCGTCACTTTGCTGAGAATGGATTCACAGCTGGTGGTGGCAGGATGGGTGGAAACGGATTGACA
GCCGGTGATGGCAGGATGGGTGGAAACGGATTTACAGC------------------------------------CGGTGA
TGGCAGGGTGGGTGGAAACGGATTCACAG------------------------------------CCGGTGATGGCAGGA
TGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGATGGGTGTAACCGGATTCACAGCCGGTGGTGGTAGGTCGGGCCGG
TTTAACATGGAAATGCTGCGGACAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACTGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCGAAAGGGGC
GGTCTCGACTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAACAAGATTGGCCTCAAATCG
GTCGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGTTTCCGGGG
CGAAAGAGTGAGGACCCCGTCTCCTATCATGTATGTCCACGACGTGACCCAGCTCGCTCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAAGAAGCCCCGGCAAGAAGTGTGGAGACCAGTATCCTGCCTCCAAGGAGAAGCA--
--AAGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGGCTGGAAGTATTTATAAATACTTATTAGACAG
TCTTAGAT--CGGCTTTTGTAACTCAAAACCATTTTGTCATTTCCTGTAATGTTGCTGAGGTGATGGATTTGTTTTGATA
TGACATGG-----TTGCATGCAGTTCCCTCTCCTTTTCTGGGTTTCCA-----------------------TACGTGCTG
AGATGCTACAAATTTCTTGACTTGCAAGAAGTGAAAAAGTATGAAGTTGCAAGTAATTTAGACGGGTTTCA---------
--CACTAAAATAATGTTCTGTTTTAATGGTTGGCTCTATCCCCTCATTTTTCTTTTTTTAACCGGCGAGAAAATATTCTG
AGATTTCG-TAAAATT-AATCATTGTCTGTGATTCTTTTATTTTTA--AGCAGGGCAAAATTC-AACTCTT--TAGGCCA
AAATATGCAGAGCTCCCTTCAT---ATTCCCTCTTCCCCTCTCACTCAAACTTCTCTGTTGAAGCATTGGAGTGGTTACA
GGGGTGAATCTCCTGTGCAATTAATTAGAAGGGTGGAATTAGTGGGTGATTATTTAGAACTTAACTA---GAATCTCTAG
TGTGGTC---AGGAGTGGCTTCTCTG--CTATTATTTTGTCTGCATTAGTTGGAAGGATGTAGTATTGCAAAGGAACTTT
TAACTAGAATCTTGCTGCAAGATTAGTTGCAGCAAGGAAAACACTG----------AATCTTGACAGCATCATACACAGA
CCATGCATGGAATGAGAT-----------------------------------------------------------CAA
TGATTCCATGATTTCATTAATGACAGTGTTCCACATATATATCACTTGA-----AATTGCTACCAACTGCTTATGTTCAT
AATAGCAAAGCCAAAAAAGTA----------GAAATCATAGTTAACCCAGATTACAACC-AAAATGCAGACAACACTGAA
TTTTGGTGCACACACTACTGCATCAAATCATTCTGCTTGTACATGAATGCTTCGCTTCAGACTATTATTATAAATCTTCG
TAAAGCTCCCGATCGATCCTTTTTCCACCAGGCCCATATCCATCAATCGTCGGCATATATAAATAGCATCTCCAG-----
--CCCCAGCATTGTAGTACTTCACAAGATGGGGACGATATGATGGA
>chr3D_1661
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------------------------------------------------------------------------------TT
TTTCCAAGTTTTGCCGAGACATCAACAGAGTGGTCGGTCTTGTTTATCTGGTGCTTGATACAATTTGAATCTCGATTTGT
GCTTTTGCAGGGCCCACTGCAGGGCCTCACGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGACGGCGGTTTTCCCCGTCACTTTGCTGAGAACGGATTCA------------------------------------CA
GCCGGTGGTGGCAGGATGGGTGGAAACGGATTTACAGCTGCTGATGGCAGGATGGGTGTTAATGGATTCACAGCTGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAG------------------------------------CCAT-----------
-------------------------TGGTGACAGGATGGGTGGAACCGGATTCACTGCCGGTGATGGCAGGTCCGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACTGTGACGGACGTCAAAGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCCTCAAGTCG
GTTGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGTTTCCGGGG
CGAAAGAGTGAGGACCCCGTCTCCTATCATGCATGTCCACGACGTGACCCAGCTCGCGCATAATGGATGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAATATCCTGCCTCCAAGGAGAAGCA--
--AAGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGCCTGGAAGTATTTATGAATACTTATTACACAG
TCTTAGATCGCGGCTTTTGTAAGTCAAAACCATTTTGTCATTTCCTGTAATGTTGCTGAGGTGATGGATTTGTTTTGATA
TGACGTGG-----TTGCATGATGTTCCCTCTCCTTTTGTGGATTTCCTATATAATGATAGCACTGCGAGTGTACGTGCTG
AGATGCTACTAATTTCTTGATTTGCAAGAAGTGAAAAAGTATGAAGTTGCAAGTAATTTAGACGGGTTTCG---------
--CACTAAAATAATGTTTTGTTTTAATGGTTGGCTCTGTCCCCTCATTTTTCCTCTTTTAACCAGCGAGAAAATATTCTG
AGATTTGA-TAAAATTAAATCATCGTCTGTGATTCTTTTAATTTTA--AGCAAGGCAAAATCC-AACTCTT--TAGGCCA
AAATATGCAGAACTCCCTTCAT---GTTCCCTCTTCCCCTCTTACTCAAACTTCTCTGTTGAAGCATTGGAGTGGTTACA
AGGGTGAATCTCCTGTGCAGTTAATTAGAAGGGTGGAATTAGTGAGTGATTATTTAGAACTTAACTA---GGTTCTCCAG
TGTAGTTAGAAGGAGTGGCTTCTCTG--CTCTTATTTTGTCTGCATTAGTTGGAAGAATGTAGTATTGCAAAGGAACTTT
TAACTAGAATCTTGCTGCAAGACTAGTTGCAGCAAGGAAAACACTG----------AATGTTGACAGCATCACACACAGA
CCATGCATGGAATGAGATGAATGATTCCATGATTTAATCTTGACAGCATCGCACACGGACCATGCATGGAATGAGATGAA
TGATTCCATGATTTCATTAATGACAGTGTACCACATATATAGCACTTGA-----AATTGCTACCAACTGCTTATGTTCAT
AATAGCAAAGCCAAAAAAGAT----------GAAATCATAGTTAACCCAGATTACAACAAAAAATGCAGACAACACTGAA
TTTTGGTGCACACACTACTGCATT-AATCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAATCTTCA
TAAAGCAACCGATCGATCCTTTTTCCACCACGCCCATATCCATCAACCGTCGGCATATATAAATAGCATCTCCAGGCTCC
AGCCCCAGCATTGTA---CTTCACAAGATGGTGACGATATGACGGA
>chr3B_1724
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--------------------------------------------------------------ATTTGAATCTCGATTTGT
GCTTTTGCAGGGCCCATTGCAGGGCCTCATGAACGCCGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGA
CTGACGGCGGTTTTCCCCGTCATTTTGCTGAGAACGGATTCA------------------------------------CA
GCCGGTGGTGGAAGGATGGGTGGAAACGGATTTACAACTGCTGATGGCAGGATGGGGGGAAACGGATTCACAGCCGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAG------------------------------------CCCT-----------
-------------------------TGGTGGCAGGATGGGTGGAACCGGATTCACTGTCGGTGGTGGCAGGTCCGGCCGG
TTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAGGGGAAGAA
GACCTTTGTGACTGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCCGGCTGTTTGGAGGATCGAAAGGGGC
GGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCCTCAAGTCG
GTCGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGTTTCCGTGG
CGAAAGAGTGAGGACCCCGTCTCCTATCATGTATGTCCACGACGTGACCCAGCTTGCGCATAATGGTTGCCGGCTGCCCA
AAAAGGTAAGGAAGTAAGACTGATAATATCCCCCAGC---AAGTGTGGAGATCAATATCCTGCCTCCAAGTAGAAGCAC-
---AGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGCCTGAAAGTATTTATGAATACTTATTAGACAA
TCTTAGAT--CGGCTTTTGTAAGTGATAACCATTTTGTCATTTCCCGTATTGTTGCTGAGGTGATGGATTTGTTTTGATT
TGACCTGG-----TTGCATGCAATTCCCTCTCCTTTTGTGGATTTCCTATATAATGACAGCACTGCCCGTGTATGTGCTG
AGATG----------------------------------TATGAAGTTGCAAGTAATTTAGATGGGTTTCG---------
--CACTAAAATAATGTTCTGTTTTAATGGTTGGCTCTGACCCCTCATTTTT-CTTTTTTAACCAGCGAGAAAATATTCTG
AGATTTCA-TA-----------------GTGATTCTTTTAATTTTATAAGCAAGGCAAAATTC-AACTCTT--TAGGCCA
AAATATGCAGAACTCCCTTCAT---GTTCCCTCTTCCCCTCTCACTCAAACTTGTCTGTTGAAGCAATGGAGTGGTTACA
GGGGTGGAACTCCTGTGCAGTTAATTACAAGGGTGGAATTAGTGGGTGATTATTTAGAACTTAACTA---GATTCTCCAG
TGTAGTTAGAAGGGGTGGCTTCTCTGAACTCTGATTTTGTCTGCATTAGTTGGAAGAATGTGGTATTGCAAAGGACCTTT
TAACTAGAATCTTGCTGCAAGATCAGTTGCAGCAAGGAAAACACTG----------AATCTTTACAGCAGCATACACAGA
CCATGCATGGAATGAGATGAATGATTCCATGAT-----------------------------------------------
------------TTCATTAATGACAGTGTTCCACATATATATCACTTGA-----AATTGTTACCAACTGCTTATGTTCAT
AATAGCAAAGCCAAAAAA--------------AAATCATAGTTAACCCAGATTACAACC-AAAATGCAGACAACACTGAA
TTTTGGTGCACACACTACTGCATCCAATCATTCGGCTTGTACATGAATGGTTCCCTTCTGAGTATTATTATAAATCTTCA
TAAAGCTCCCGATCGATCCTTTTTCCAGCATGCCCATATCCATCAATCGTCGGCATATATAAATAGCATT-------TCC
AGCCCCAGCATTGTA---CTTAATAAGATGGCGACGATATGATGGA
>chr2B_3117
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TGTAGTTAGAAGGAGTGGCTTCTCTGA-------TTTTTTCTGCATTAGTTGGTAGAATGTAGTATTGTAAAGGAACTTA
TAACTGGAATCTTGCTGCAAGATTAGTAGCAGCAATGAAAACACTG----------AATCTTGACAGCATCATACACAGA
CCATGAATGGGATGGGAT-----------------------------------------------------------GAA
TGATTCCAGGATTTGATTAATGACAGTATACGACATATATATCACTTAA-----AATTGCTACCAACTGCTTATGTTCAT
AATAGCAAAGCCAAAAAAGAA----------GAAAACATAGTTAACCCTGATTACAACCAAAC-TGCAGACTGCACTGAA
TTTTGGTGCACACACTACTGCATCCAATCATTCGGCTTGTACATGAACGCTTCCCTTGTGAGTATTATTATAAATCTTCA
TAAAGTTCCCGATCAATCTTTTTTCCACCACGCCCATATCCATAAATCGTCGGCATATATGAATAGCATC-------TCC
AGCCCCAGCATTGTA---CTTCGATAAATGGTGACGATATGACGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----------S-------------------------------
-------S---S--------------------------------------SSSSSSS-----------------------
--------------------------------------------------------------------------------
-----------------S----------------S------------S-----------------------S--------
--------------------S----S--------------------S-----------S------------S--------
S-------------------S--------S-----------------------------------S--------------
----------------S----------S---S-----------------------S-------S--SS-S--S-----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S---------
----S-------------------------------------S--S----------------------------S-----
----------------------------------S------------------S-------SSSSSS-SSSSSSSSS---
--S-------S-----S----S----------------S-------------------S--------S------------
---S---------------S------------------------------------------------------------
----------------------S--S-----------S---------------SS------------S------------
--------------------------S----------------------------------------------------S
-----------S--------------------------------------S--SS-------------------------
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-----------------------------------------S--------------------------------------
------------S-------------------------------------------------------------------
----------------------S-----------------S---------------------------------------
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--------------S-------------------------------------------------------------S---
--------------------------------------------------S-----------------------------
---------------------------------------------------S----------------------------
----------------------S----S-----------------S----------------------------------
-----------S-------------------------------------------------S-------S----------
----------------------SSS-------------------------------------------------------
------------------------S--------S---------S------------------------------------
--------------------------------------------------------------------------------
-------------------------S--------------S---------------------------------------
--------------------------------------------------------------------------------
------------------------------S------------S------------------------------------
---------------------------------------------S--------------------S-------------
----S---------------------------S-----------------------------------------------
----------S-------S--------------------S----------------------------------------
----------------------------------------------
>forward_680
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--------------------AGCTCACATACCTCGGGACT----------------------------------------
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>reverse_2202
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-----------------------------------------GAAGAGGGACGTTCTCCACG-------------------
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>forward_693
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---------------------------------CGGGACTAGAACAACCGCTT---------------------------
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>reverse_2343
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----------------------CGGTGAAGCAACAGGGGAG---------------------------------------
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>forward_1691
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-----------------------------------------------------------------------TCCTGCCTT
TTCCCCAGTTC---------------------------------------------------------------------
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>reverse_2988
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---------------------------AGTTGCTCTGTCCCCTTGTT---------------------------------
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----------------------------------------------
