>input_sequence_47257
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------------------------ATGGAGCCCACACCCTTGTCAGTGTGCATCTCGCTGCTCTGTATCGCGCTGCTGTG
CCTCCTATGGAACAAGTCAACGAAGCCCCCCGCCGGTGCGCCTGCACCGCCACCGCCGCCGGGCCCAACGCCGTTCCCGG
TCATCGGCAACATCCCGAACCTGGTCCGCGGCGGCGAGCTACATCGCGCGCTCGCTCGCCTGTCGGCGTCCTACGGCCCC
GTCATGTCGATGAGGCTCGGCATGGCGAGCCTCGTCGTGCTGTCGTCTCCGGCTACGGCGCACGAGGCGCTCCACAAGAA
GGAGGGTGCCGTCTCCTCCCGGTGGGTCCCCGACAGCGCCAGCGTCATGGGCCACAGCGGCATCTCCATGGTGTGGCTCC
CGAGCTCCAGCCCTCTGTGGAAGCACCTGCGCACCGTGGCGAGCACCCTGCTCTTCACGTCCCGGCGGCTCGGCGCCAGT
CGCGCCATCCAGGAGCGCAAGGCCCGGGAGCTCGTTGACCACTTACACGCGAGCTCCGGCCGCCCGGTGCGCGTCGCGCT
CCCCGTGTTCAGCGCCGTGCTCAACATGCTGTCCAGCGTTCTGTTCTCGGAGGACGTCGTCGAGCTGGGGTCGGTGACCG
GGCAGGAGTTCATGGTGCTCATCGCAGACTCTGTCGCGGAGACGGCAAGGCCGAACATCTCCGACTTCTTCCCATTCCTC
AGCTCGCTAGATCTCAGCCGCCGCCGCCGCGCGGTCGCCGCGAATCTCAGTAGATTCTACCAGTTCTTCGACGCTGTCAT
AGACCGTCGGTTGAACAGCGCCGAGAAGCCCGGCGACCTGCTGGAGTCGCTGCTCGAGCTCCCCGCCAAGTCCCAGCTCG
AGCGGCCGGTGATCCGAGCTCTCCTAACGGTACATCACATTTTCAGGGACGATCCATGACTGATGAAATTAAAGCTGTGA
CCGTTGTAATTAATCTTGCTGTCATGAACCAGGATCTGTTCATCGCTGGGAGCCACACGACGACCACCACGGTGGAGTGG
GCGATGGCGGAGCTGCTCCGCAACCCGACCAAAATGGCGAAGGCGCGCGCCGAGCTCAGGGAAGCGTTCGGATCCGGCAA
CGCAGAGGAAGGTGACCTCGCCAACCTCCCGTACCTCCAGGCCGTGATGAAGGAAACGATGCGGCTGCACCCCCCAGCGC
CGCTGCTGCTGCCGCACGAGGTGTCGGAGACCGGCGTGACGCTCGGCGGCTGCTCGGTGCCGAAGGGCGCCCGTGTTCTG
ATCAACGTGTGGGCCATCGGGAGGGACCCCGAGGTGTGGGCCGAGCCGGAGGTGTTCATGCCGGAGAGGTTCTTGGACAG
GGAGGTGGACTTCCGGGGGAGGGCGTTGGAGTTCATACCGTTCGGATCGGGGCGGAGGGCGTGCCCCGGGATGCCGCTGG
CCGTGACGGTCGTGCCGATGGTGTTGGCATCGCTGCTCCACGAGTTCGAATGGAGGCTGCCGGATGGGATGGTGCCCGGT
GATGTGGATCTCAGCGACCGGTTTGGCGCCGCGCTAGAGCTTGCCGTTCCCCTGAGGGCCGTGCCGGTTTGGACGAAAGG
CGCGGAAGATTTGAGTTCTTCTTCGTGA----------------------------------------------------
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------------------------------------------------------------------------
>chr5D_1_TraesCS5D01G240000
TCTTCATCTACAATTCGAATGACTAGGTTCAATCCAAACGGCTCAGTTCAAAAAAGAAACGAGC---GAAAAAACTCACC
TAGGCAATTCATCGAACACTTGCAGTGCGGTGGTGATGCACCGGCCAGCCGCCGTCGTTTCGGCCAAACCGGCGGGTGGT
GAAGTGTGGAAATGACCTGCAGCAGCACGGAAGCAAGGTCAGGA-GCGGTGGCCACCGAAGA-GGAAGAAACATGAATCA
ATCCGACGAATCGGTTATGGCGACGGCGATGGTGTTTCACCTCGATTCCGGCGACGACGACAGTGGACGAACGGGCC-GG
GGTCTGGCAGAAGGGCTGCGAGGGCCAGGGGAGGCAACGCGGTAGCGGCAGGGGCCGGC--------------GGGCGGC
C-------------ATCGGCGAAGAGGCA-----------GTGGC---------GGGGTAGAGGCGACACATCGGCGCGA
GAGTTTTGCTCTGAGCGGTAGGGAC-GGAGTAAAAAATAGGGGTGGGATACACGCGGGAGGATAATTTATCCTCCGCTAA
CGGCTATTGGGGATCGGCTAGATGCGCATTAGATGAGGAAAACCCAATTTATCCT-CCTCTAACAATGAATAGGGGATCG
GTTAGAGTTGCCCTAACTGAACCGGTCTAAA-ATAATCATGTGTGTGCTAAATAGAGACAGATGTGGATACATGATTTAT
CTAAGAAATTTGCACTCCAAGTTGGAACATAGAAAACTCGAATACTTACTCAAGTTGTCTTCCACGACTTCTCAAAGCAA
TAGAAAACTGCATTGCCAAA-TCATGTTCTCTTTCCCAACTTGATCGAAACAGCGCACGCTTTGCAACTTGCAACCATTG
AAAATGTTTAAATTAGTACTTGGATGTTTGAA-------CCTTGTGAAACAAGTTATGTGCAACCTTTTGATGTCACAAA
ATTGTGCAATTTTGTGAACATACGTAACTGAGATAGCTCGGAATCTTGGCAACGAAACCTTACAAGTCAAAATACATCTT
CAGATCTTGTGTGCCATTTCAGTCATGGAGCCCACACCCTTGTCAGTGTGCATCTCGCTGCTCTGTATCGCGCTGCTGTG
CCTCCTATGGAACAAGTCAACGAAGCCCCCCGCCGGTGCGCCTGCACCGCCACCGCCGCCGGGCCCAACGCCGTTCCCGG
TCATCGGCAACATCCCGAACCTGGTCCGCGGCGGCGAGCTACATCGCGCGCTCGCTCGCCTGTCGGCGTCCTACGGCCCC
GTCATGTCGATGAGGCTCGGCATGGCGAGCCTCGTCGTGCTGTCGTCTCCGGCTACGGCGCACGAGGCGCTCCACAAGAA
GGAGGGTGCCGTCTCCTCCCGGTGGGTCCCCGACAGCGCCAGCGTCATGGGCCACAGCGGCATCTCCATGGTGTGGCTCC
CGAGCTCCAGCCCTCTGTGGAAGCACCTGCGCACCGTGGCGAGCACCCTGCTCTTCACGTCCCGGCGGCTCGGCGCCAGT
CGCGCCATCCAGGAGCGCAAGGCCCGGGAGCTCGTTGACCACTTACACGCGAGCTCCGGCCGCCCGGTGCGCGTCGCGCT
CCCCGTGTTCAGCGCCGTGCTCAACATGCTGTCCAGCGTTCTGTTCTCGGAGGACGTCGTCGAGCTGGGGTCGGTGACCG
GGCAGGAGTTCATGGTGCTCATCGCAGACTCTGTCGCGGAGACGGCAAGGCCGAACATCTCCGACTTCTTCCCATTCCTC
AGCTCGCTAGATCTCAGCCGCCGCCGCCGCGCGGTCGCCGCGAATCTCAGTAGATTCTACCAGTTCTTCGACGCTGTCAT
AGACCGTCGGTTGAACAGCGCCGAGAAGCCCGGCGACCTGCTGGAGTCGCTGCTCGAGCTCCCCGCCAAGTCCCAGCTCG
AGCGGCCGGTGATCCGAGCTCTCCTAACGGTACATCACATTTTCAGGGACGATCCATGACTGATGAAATTAAAGCTGTGA
CCGTTGTAATTAATCTTGCTGTCATGAACCAGGATCTGTTCATCGCTGGGAGCCACACGACGACCACCACGGTGGAGTGG
GCGATGGCGGAGCTGCTCCGCAACCCGACCAAAATGGCGAAGGCGCGCGCCGAGCTCAGGGAAGCGTTCGGATCCGGCAA
CGCAGAGGAAGGTGACCTCGCCAACCTCCCGTACCTCCAGGCCGTGATGAAGGAAACGATGCGGCTGCACCCCCCAGCGC
CGCTGCTGCTGCCGCACGAGGTGTCGGAGACCGGCGTGACGCTCGGCGGCTGCTCGGTGCCGAAGGGCGCCCGTGTTCTG
ATCAACGTGTGGGCCATCGGGAGGGACCCCGAGGTGTGGGCCGAGCCGGAGGTGTTCATGCCGGAGAGGTTCTTGGACAG
GGAGGTGGACTTCCGGGGGAGGGCGTTGGAGTTCATACCGTTCGGATCGGGGCGGAGGGCGTGCCCCGGGATGCCGCTGG
CCGTGACGGTCGTGCCGATGGTGTTGGCATCGCTGCTCCACGAGTTCGAATGGAGGCTGCCGGATGGGATGGTGCCCGGT
GATGTGGATCTCAGCGACCGGTTTGGCGCCGCGCTAGAGCTTGCCGTTCCCCTGAGGGCCGTGCCGGTTTGGACGAAAGG
CGCGGAAGATTTGAGTTCTTCTTCGTGACGAACTCATTACCCGTTGACTACCTTTTCTTGATTTATTTTCATCATCAATG
TACTAAACATTTCACATTTGCGTTCT-ATTATAAGTGCACATTTTGTTTGTGTGAGTACTGTATTGTAATTTTCTTTCGT
GGGAGGAGCTATGTTTATTTATAATTTTGTTATTTAAAAAA--TCCA-GGGCCAAACTGGTATGAACGCTCTAGCGGCCG
AACCCATGCTCTCCACCCCTCCACCCGACCGACCGCTGCCGCCACGGCCACCGCCACCGCAGATGTGGCCATTGACCGAG
CTCGCCGTGCCACCGTGTCGCGCCGCTTCCTATCGGGATGTCGTCTATCGCCATCTCCCCAAGGGAAAGGGCCATAACAT
CTCTCCATCTTTCCCAATATCGATGGGAGATCATGAAGAGGGGGATCCGATCTCGGACCCCATGGAGGATTTGGGGGAGC
CAACGCGGCCGGTCCACCTACCGCTAGCGGCGAGACTTCGTAGGATTCGCAGCATCATTAGGCGGGAGGAGGCGTATGAT
AACATCCCGCTGGTCGTACATGAAGAAGTTGGAGTGATCTGCTGGACCACGTTGAAGGAGATGAGGAGGTTGCACGTGAA
GCCCCCTGAGGGAGTCCTGGATTAGGGGGGTCCTCGGGCGTCCGGCTGTGTGATATGGGCCGGACTGATGGACCGTGAAG
ATACAAGGTAGAAGGCCTTCCCCCATGTCCGGATGGGACTCTCCGATGCGTGGATGGCAAAATTGGCGTCCAAATACGTA
ATTTCCTTTTTCTGCAAGCCGACTCTGTACAACCCTAGGCCCCTCCGGTGTCTATATAAACCGGAGGGTTTAGTCCGTAG
AGGCTATCAGAATTCATATAGGCTAGACATCTAGGGTTTAGCCATTACGATCTCGAGGTAGATCAACTCTTGTAACCCCT
ATACTCATCAAAGTCAATCAAGCAGGAAGTAGAGTTTTACCTCCATTAAGAGGGCCCAAACCTGGGTAAACA
>chr5D_1
TCTTAATCTATAATTCAAACGGTTTGGTTCAATCCAAACGACTTGGTTC--AAAAAGAACAAAC---GACAAAACTCACC
TAGGCAAACTGTCGAACACCTGCGGTGCGGTGGTGGTGCACCGGGCAGCCGCCGTCGTTTCGGCCAAACCGGCGGGCAGC
AAAGCGTGGGAGTGACCTGCATCGGTGCGCAAGTAAAGTAAGAT-GCGGCGA-CACCAAAGAGGAAGAAGATTCTAAGCA
ATCCGACAAATCGGCTATGGCGACGGCGGTGACGTTTCACCTTGATTCTGGTGATGGCGACGGGGGCCGTACGGGCTCAG
CGTCGGGCAAAAGGGCGGCGAGGGCCAAGGAAGGCAACGAGATAGCGGCGGGGCCGGC----------------GGGCAG
TCGCCGGGAGGTGTGCCAGCGAAGAGGCA-----------ATGGC---------GGGGAAGTGGCGTGAGAGAGGCTCG-
GC-TTTTCCTTCAAACAGTAGCAGT-GGAGT-AAATTTAGGCACGGGATAGAAGTCGTAGGATAAATTATTCTTCACTAT
TCGGTTTAGGGGATCGGCTATGTGCCGGTTAGAGGAGTAAAATCGAATTTATCCT-TCTTTAAAATCGGACAGGGGATCG
GTTTGAAATGCCCT------------------------------------------------------------------
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------------------------------------------------------------------------
>chr5A_1
TCTTCATCTACAACTCGAACGACTAGGTTCAATCCAAACGG--CAGTT-CAAAAAGAAACGAACGAAAAAAAAACTCACC
TAGGCAATTCGTCGAACACTTGCGGTGTGGTGGTGATGCACCAGCCAGCCTCTGTTGTTTCAGCCAAAC-GGCGGGTGGT
GAAGTGTGGAAATGACCTGGAGCGGCACGGAAGCAAGGTCAGGAA-CGGTGGCCACCGAAGAGGAAGAAAAAACGAATCA
ATCCGATGAATTAGTTATGGCGACGACGATGGTGTTTCACCTCGATTCTGACGATGACAGCGGTGGACGAACGAGCTGGG
CGTCTGGCAGAAGGGCGGCGAGGGCCAATGGAGGCAACACAATAGCAGCGGGGGCCGGC--------------GGGCGGT
C-------------ATCGGCGAAGAGGCA-----------GTTGC---------GGGGGAGAGGCGACACAATGACGCGG
GAGTTTTGCTCCTGACGGTAGGGGC-AGAGT-AAAAATAGCGGTGGGATACACGCAGGAGGATAATTTATCCTCCGCTAA
CGGCTATTGGGGATCGGCTAGGTGCACGTTAAAGGAGGAAAACCGAATTTATCCT-CCTCTAATAATGAATAGGAGATCG
GTTAGAGTTGCCCTAGCTGAACTGGTATAAATATAATCATGTGTGTGCT-AATAGAGACAGATGTGGATACATGATTTAT
ATAAGAAATTTGCACTCCAAGTTGGAACATAGAAAACTCGAATACTTAATCAACTTGTCTTCCACGACTTCTCAAAGCAA
TAGAAAACTGCATTGCCAAA-TCATGTTCTCTTTCCCAACTTGATAGAAACAGCGCACGCTTTGCAACTTGCACCCATTG
AAAATC-----TTTAGTACTTGGATGTTTGAAGTTTGAACCTTGCGAAACAAGTTACGTGCAACCTTTTGATGTCACCAA
GTTGTGCAATTTTGCAAGCATACATAACTGAGATAACTCGGAATCTTGGCAACGAAACCTTACAAGTCAAAATACATCTT
CAGATCTTGTGTGTCA-TTCAGTCATGGAGCCCACACCCTTGTCAGTGTGCATCTCGCTGCTCTGTATCGCGCTGCTGTG
CCTCCTATGGCACAAGTCAACGAAGCCCCCCGCCGGTGCGCCTGCACCGCCACGGCCGCCGGGCCCAACGCCGTTCCCAG
TCATAGGCAACATCCCGGACCTGGTCCGCGGCGGCGAGCTACACCGCGCGCTCGCTCGCCTGTCGGTGTCCTACGGCCCC
GTCATGTCGATGAGGCTCGGCATGGCGAGCCTCGTCGTGCTGTCGTCCCCGGCTACGGCGCACGAGGCGCTCCACAAGAA
GGAGGGTGCCGTCTCCTCCCGGTGGGTCCCCGACAGCGCCAGCGTCATGGGCCACAGCGGCATCTCCATGGTGTGGCTCC
CGAGCTCCAGCCCGCTGTGGAAGCACCTGCGCACCGTGGCGAGCACCCTGCTCTTCACGTCCCGGCGGCTCGGCGCCAGT
CGCGCCATCCAGGAGCGCAAGGCCCGGGAGCTCGTTGACCACTTACACGCGAGCTCCGGCCGCCCGGTGCGCGTCGCGCT
CCCCGTGTTCAGCGCCGTGCTCAACATGCTCTCCAGCGTTCTGTTCTCGGAGGACGTCGTCGAGCTGGGGTCGGTGACCG
GGCAGGAGTTCATGGAGCTCATCGCAGACTCTGTTGCGGAGACGGCCAAGCCGAACATCTCCGACTTCTTCCCATTCCTC
AGCTCGCTAGATCTCAGCCGCCGCCGCCGCGCGGTCGCCGCGAATCTCAGCAGATTCTACCAGTTCTTCGACGCTGTCAT
AGACCGTCGGTTGAACAGTGCCGAGAAGCCCGGCGACCTGCTGGAGTCGCTGCTCGAGCTCCCCGCCAAGTCCCAGCTCG
AGCGGCCGGTGATCCGAGCTCTCCTAACGGTACATAACATCTTCCGAGACGATCCATGACTGATGAAATTAAAGCTGTAA
CCGTAGTGATTACTCTTGCTGTCATGAACCAGGATCTGTTCATCGCTGGGAGCCACACGACGACGACCACGGTGGAGTGG
GCGATGGCGGAGCTGCTCCGCAACCCGACCAAAATGGCGAAGGCGCGCGCCGAGCTAAGGGAAGCGTTCGGATCCGGCAA
CGCAGAGGAAGGTGACCTCGCCAACCTCCCGTATCTGCAGGCCGTGATGAAGGAGACGATGCGGCTGCATCCCCCAGCGC
CGCTGCTGCTGCCGCACGAGGTGTCGGAGACCGGCGTGACACTCGGCGGCTGCTCGGTGCCGAAGGGCGCCCGTGTTCTA
ATCAACGTGTGGGCCATCGGAAGGGACCCCGAGGTGTGGGCTGAGCCGGAGGTGTTCATGCCGGAGAGGTTCTTGGACAG
GGAGGTGGACTTCCGGGGGAGGGCGTTGGAGTTCATACCGTTCGGATCGGGGCGGAGGGCGTGCCCCGGGATGCCGCTGG
CCGTGACGGTCGTGCCGATGGTGTTGGCATCGCTGCTCCACGAGTTCGAATGGAGGCTGCCGGATGGGATGGCGCCCGGT
GATGTGGATCTCAGCGACCGGTTTGGCGCCGCGCTAGAGCTCGCCGTTCCTCTGAGGGCCGTGCCGGTTTGGACGAAAGG
CGCGGAGGATTTGAGTTTTTCTTCGTGACGAACTCGTTACCCGTTGACTACTTTTTCTAGATTTATTTTCAC---CAATG
TACTAAACATTTGACATTTGCGTTCTTATTATAAGTGCATATTTTGTTAGTGTGAGTACTTTATTGTAATTTTCTTTCGT
GGGAGGAGCTATGTTTATTTATGATTTTGTTATTTAAAAAAAGTCCA-GGGCCAAACCGGTATGCATGCTCTGGCGGCCG
AATCCACACTCTCCACCCCTTCACCCGACCGACTGCTGCCGCCACCGCCACCGC------AGTTCTGGCCGTTGACCGAG
CTGGCAGCGCCATCGTGTCGCGTCGCGTCCTATCGAGACGTCGTCCATCGCCCTCGCCCCAATGAAAAGGGCCATATCAT
CTCTTCATCTTTTCCATTATCAATGAGAGAT-------------------------------------------------
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------------------------------------------------------------------------
>chr5A_1
TCTTCATCTACAATTCAAATGGCTAGGTTCAATCCAAACGGCTCGATTCAAAAAACAAAAGAAC---CAAAAAACTCACC
TGAGCAATTCGTCGAACACTTCCGGTGCAGTTGTGATGCACCGACCAGCCGTCGTCATTTCGGTCAAACCGGCGGGTGGC
GAAGCGTGAAAATGACCTGGAGCAGAGCGAAAGCAAGGTCAGGAAGCGGTGGCCACAAAAGA-GAAGAAAAAATGAATCA
ATCCGATGAATCTGCTATGGCGA-GGCGGCGACGTTTCACCTCAATTTTGGCGACGACG------GACGAATGGACTAAG
CGCCGGACAG---------AAGGACCAAGGGAGGCAATGCAATAGCGGCAGGGGCCGG----------------GGCGAT
C-------------AACAACGAAGAGGCA-----------GCGGT---------GTGGAAGAGGCGATAGAGAGGCACGA
GC-TTTTGCTCCGAGCGGTAACCGTGGGGGT-AAAAATAGGGGTGGGATAGGCACTGGATGATAATTTATCCTCCGCTAA
CGGCTATTGGGGATCGGCTAGGTGCGCGTTAGAGGAGGATAGCTGAATTTATCCT-CCTCTACCGATGGATAGGGGATCG
GTTCGAGTTGCCCT------------------------------------------------------------------
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------------------------------------------------------------------------
>chr7D_1
TCTTCATCTACAATTCAAACGGCTAGATTCAATCCAAATGGCTTGGTT-TAAAAAGAAACGAAC---GAAAAAACACATC
TAGGCAATCCGTTGAACACTTGCGGTGCGATGATGATGCACCGGCCATCCGACGTCTTTTCGGCCAAACCGGCGAGTGGC
GAAGCGTGGAAATGACCTGCAGCAACACGGAAGCAAGGTCAGGA-GCGGCGGCCGCCAAAGAGGAAGAAAAAATGAATCA
ATCCGACAAGTCGGTTATGGCGACAACGACGACATTTCACCTCGATTCCAGGGACAACGATGGTGGATGAACGGACTGGG
CGTCAGGCAGAAGGGTGGCGAGGGGCAAGGGAGGCAACACGGTAGCGGCGGGGGCCGGC--------------GGGCGGT
C-------------GCCGGCATAGAGGCATTTGCAGGGAAGTGGC---------GAGGGAAAGGCGACAGAGAGGCGAGA
GAGTTATCCTTCGAGCGGTAGCGAC-GGAGT-AAAAATAGCGTTGTGATAGGCGACGAAGGATAATTTATCCTCCGCTAA
CGGCTATTGCGGATCGACTAGGTCTGCGTTAGAGGAGAAAAACCGAAATTATGCT-CCTCAAACGCTGGATAGGGGATTA
ATTAGAGTTGTCCTAA----------------------------------------------------------------
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------------------------------------------------------------------------
>chr7D_1
TCTTCATGTACAATTCAAACGGATAAGTTCAATCCAAATGGTTCGGTT-CAAAAAGAAACGAAC---GAAAAAACTCATC
TAGGCAATTCGTCGAACACTTGCGGTGCAGTGGTGATGCACCGGCCAGCCGCCGTCGTTTCGGCCAAACCGGCGGGTGGC
GAAGGGTGAAAATGACGTGCAGCGGCATGGAAGCATGGTCAGGAAGCGGAGGCCGCTAAAGAGGAAGAAAAAACGAATCA
ATCCGACGAATCGGTTATGGCGACGACGGCGTCATTTCACCTTGATTTCGGCGACAACGACGGTGGACGAACGGCCTGGG
CGTCGGGCAGAAGGGCGGCG-------AGGGAGGCAACGCGGTAGCGGCGGT----------------------------
-------------TGCCGGCAAAGAGGCG-----------GTGGC---------GGGGGAGAGGCGATATAAATACGCGA
GAGTTATGCTCCAAGTGGTAGCGGC-GAAGT-AAAAATAGGGGTGGGATAGGCGCTAGAGGACAATTTATCCTCCACTAA
CGGCTATTGGGGATTGGCTAAATGCATGTTAGAGGAGAATAACCGAATCTATCCCCCCTGTAACGCCGGATAGAGGATCG
GTTAGAGTTGCCCTAA----------------------------------------------------------------
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------------------------------------------------------------------------
>chr2D_1
TCTTCATCTATAATTCAAATGGCTTGGTTCAATCCAAACGGCTCGGTTCAAAAGG--AAACGAA---CGAAAAACTCACC
TAGGCAATTCACTGAACACTTGCACTGCGGTGGTGATGCACCGGCCAGCCGCCGTCGTTTCGGCCAAACTGGCGGGTGGG
GAAGCGTGGGAGTGACCTGCAACGGCGCGCAAGCAAGGTCAGAT-GCGGCGGCCGCCAAAGAGGAAGAAAATATGAAGCA
ATCCGACGAGTCAGTAATGGCGACGGCGGCGGCGTTTCACCTTGATTCCGGCGGCGGTGACGAGGGCGGAACGGGTTCGG
CGTCGGACAGAAGGGTGGCGAGGGCCAAGGGAGGCAACGAAGTAGCGGCGGGGCCAACGG-GCGGTCGCCGACG------
---------------------AAGAGGCA-----------GTGGTGGAGGG-------------------AGAGGCGAGA
CT-TTTTCCTCTGAGCGGTAGTGTC-AGAGT-AAATTTAGGGACGGGATAGGCGCGGGAGGATAAATTATCTTCCGCTAT
TCGGT-TTAGGGATCGGTTAGGTGCCGGCTAAAGGAGGAAAACTGAAATTATCCT-CCTCTAACACCGAATAGGGGATCA
GTTAGAAATGCCCTA-----------------------------------------------------------------
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------------------------------------------------------------------------
>chr3D_1
TCTTCATCTACAATTCAAACGGCTAGGTTCAATCCAAATGGCTTGGTT-AAAAAATAAATGAGC---AAAAAAACTCACC
TAGGCAATTCGTTTTACACTTGCGGTGCGGTGGTGATGCACTGGCCAGCCGCCGTCATTTCGAACAAACCGGTGGGTGGC
GAAGCGTGAAAATGACCTGCAGCGGCGCGGAAGCAAGG-CCGGGAGCGGCGCCCGCCAAAGAGGAAGAAAAAATGAATCA
ATCCGACGAATCGGTTATGGCGACGGCGGCGGCGTTTCACCTGATTC-------CGGCGACGGTGGACGAACGGGCTGGG
TTTCGGGCAGAAAGGCGGCAAGGGCCAAGGGAGGCAACGCGATAGCGGCGGGGGCCGGC--------------G------
---------------------AAGAGGTA-----------GTGGTGAGGGAGAGG--------------------CCCGA
GAGTTATGTTCTGTGCGGTAGCGGC-GGAGT-AAAA-TAGGGGTGGGATAGGCGCCGGAGTATAATTTATCCTCTGCTAA
CGGTTATTGGGGATCGGCTAGGTGCGCGTTAGAGGAGAAAAGCCGAAATTATCCT-CCTCTAACGCCGGATAGGGGATCG
GTTGGAGTTGCCCTAA----------------------------------------------------------------
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------------------------------------------------------------------------
>chr3B_1
TCTTCGTCTACAATTCAAATGGCTAGGTTCAATCCAAATGGCTCGGTT-AAAAAAGAAACGAGC--AAAAAAAACTCATC
TAGGCGATTCGTCGAACACTTGCGGTGCGGTGGTGATGCACTGGCCAGCCGCCGTCATTTCGGACAAACTGGTGGGTGGC
GAAGCGTGAAAATGACCTGCAGCGGCGCGGAAGCAAGG-CCGGGAGTGGCACCCGCCAAAGAGGAAGAAAAAGCGAATCA
ATCCGACGAATCGGTTATGGCGACGGCGGCGGCGTTTCACCTGATTC-------CGATGACGGTGGACGAACGGGCTGGG
TTTCGGGCAGAAGGGCGGCAAGGGCCAAGGGAGGCAATGCGGTAGCGGCGGGGGCCGGC--------------G------
---------------------AAGAGGTA-----------GTGGTGAGGGAGAGG--------------------CCCGA
GAGTTATGTTCTGTGCGGTAGCGGC-GGAGT-AAAAATAGGGGTGGGATAGGCGCTGGAGTATAATTTATCCTCTGCTAA
TGGTTATTGGGGATCGGCTAAGTGTGCGTTCGAGGAGAAAAGCCGAAATTATCCT-CCTCTAACGCCGGATAGGGGATCG
GTTAGAGTTGCCCTAA----------------------------------------------------------------
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------------------------------------------------------------------------
>chr7A_1
TCTTCAACTACAATTCAAACGGCTAGGTTCAATCCAAATGGTTCGGTT-CAAAGAGAAACGAAC---GAAAAAACTCATC
TAGGTAATTCGTCGAACACTTGTGGTGTGGTAGTGATGCCCCGGCCAGCTGCCGTCGTTTCAGCCAAACCGGCGGGTGGC
GAAGCCTGAAAATGACGTGCAGCGGCATGGAAGCAAGGTCAGGGAGCGGCGGCCTCTAAAGAGGAAGAAAAAGTGAATCA
ATCCGTCGAATCGGTTATGGCGACGACGACGACATTTCACCTCGATTCCGGCAACGGCGATGGTGGACGAACGGCCTGGG
CGTCTGGCAGAACGGCGACGAGGGCCAAGGGAGGCAACGCTGTAGCGACTAGGGCCGGCAAGCGGTCACCGGCG------
---------------------AAGAGGCA-----------GTGGCGGTGGGGAGGGGGGGGGGGCGATATAAATACGCAA
GAGTTATGCTCCAAGTGGTAGCGGC-GGAGT-AAAAATAGGGGTGGGATTGGCGCTGGAGGATAATTTATCCTCCGCTAA
CGGCTATTGGGGATCGACTAGGTGCGCGCTAGAGGAGGATAAACGAATTTATCCT-TCTCTAACACCGGACAAGGGATCG
GTTAGAGTTGCCTTAA----------------------------------------------------------------
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------------------------------------------------------------------------
>chr3A_40
---------------------------------------GGCTCGGTT-AAAAAAGAAACGAGC---AAAAAAACTCACC
TAGGCAATTCGTCGAACACTTGTGGTGCGGTGGTGATGCACTGGCCAGCCGCTGTCATTTCGGACAAACCGGTGGGTGGC
GAAGCGTGAAAATGACCTGCAGCGGCGCGGAATCAAGG-CCTGGAGCGGCGCCCGCCAAAGAGGAAGAAAAACCGAATCA
ATCCGACGAATCGGTTATGGCGACGGCGGTGGCGTTTCACCTGATTC-------CGGCGACGGTGGACGAACGGGCTTGG
TTTCGGGCAGATGGGCGGCAAGGGCCAAGGGAGGCAACGCGATAGCAGCGGGGGTCGGC--------------G------
---------------------AAGAGGTA-----------GTGGTGAGGGAGAGG--------------------CCCAA
GAGTTATGTTTTGTGCGGTAGCGGC-GGAGT-AAAAATAGAGGTGGGATAGGCGCCAGAGTATAATTTATCCTCTGCTAA
CGGTTAATGGGGATCGGCTAGGTGCACGTTAGAGGAGAAAAGCCGAAATTATCCT-CCTCTAACGCCGGATAGGGGATCG
GTTGGAGTTGCCCTAA----------------------------------------------------------------
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>chr5B_502
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---------------------------------------------------------------------------GCTAA
CGGCTATTGGGGATCGGCTAGGTGCATGTTAGAAGAGGAAAACCGAATTTATCCT-CCTCTAACAATGGATAGGGGATCG
GTTAGAGTTGCCCTAACTGAAATGGTATAAATATAATTA--TGTGTGCT-AATAGAGACAAATCTAGATACATCATTTAT
CTAAGAAATTTGCACTCCAAGTTGGAACATAGAAAACTCGAATACTTACTCAACTTGTCTTCCACGACTTCTCAAAGCAA
TAGAAAACTGCATTGCCAAATTCATGTTCTCTTTCCCAACTTGATCGAAACAGCGCACGCTTTGCAACTTGCAACTATTG
AAAATGTTTAATTTAGTACTTGGATGTTTGAA-------CCTTGTGAAACAAGTTATGTGCAACCTTTTTATGTCACAAA
ATCGTGCAATTTTGCAAACATATGTAACTGAGATAGCTCGGAATCTTGGCAACGAAACCTTACAAGTCAAAATACATCTT
CAGATCTTGTGTGTCA-TTCAGTCATGGAGCCCACACCCTTGTCAGCGTGCATCTCGCTGCTCTGTATCGCGCTGCTGTG
CCTCCTATGGCACAAGTCAACGAAGCCCCCCGCCGGTGCGCCTGCACCGCCACCTCCGCCGGGCCCAACGCCGTTCCCGG
TCATCGGCAACATCCCGGACCTGGTCCGCAGCGGCGAGCTACACCGCGCGCTCGCTCGCCTGTCGGCGTCCTACGGCCCC
GTCATGTCGATGAGGCTCGGCATGGCGAGCCTCGTTGTGCTGTCGTCCCCGGCTACGGCGCACGAGGCGCTCCACAAGAA
GGAGGGTGCCGTCTCCTCCCGGTGGGTCCCCGACAGCGCCAGCGTCATGGGCCACAGCGACATCTCCATGGTGTGGCTCC
CGAGCTCCAGTCCGCTGTGGAAGCACCTGCGCACCGTGGCGAGCACCCTGCTATTCACGTCCCGGCGGCTCCGCGCCAGT
CGCGCCATCCAGGAGCGCAAGGCCCGGGAGCTGGTTGACCACTTACACGCGTGCTCCGGGCGCCCGGTGCGCGTCGCGCT
CCCTGTGTTCAGCGCCGTGCTCAACATGCTGTCTAGCGTTCTGTTCTCGGAGGACGTCGTCGAGCTGGGGTCGGTGTCCG
GGCAAGAGTTCATGGAGCTCATCGCAGACTCTAGCGCGGAGACGGCCAAGCCGAACATCTCTGACTTCTTCCCATTCCTC
AGCTCGCTAGATCTCAGCCGCCGCCGCCGCGCGGTCGCCGCGAATCTCAGTAGATTCTATCAGTTTTTCGACGCTGTCAT
AGACCGTCGGTTGAACAACGCCGAGAAGCCCGGCGACCTGCTGGAGTCGCTGCTCGAGCTCCCCGCCAAGTCCCAGCTCG
AGCGGCCGGTGATCCGAGCTCTCCTAACGGTACGTCACATCTTCCGAGACGATCCACGACTCACGAAATTAAAGCTGTAA
CCGTAGTAATTAATCTTGCTGTCATGAACCAGGATCTGTTCATCGCTGGGAGCCACACGACCACGACCACGGTGGAGTGG
GCGATGGCGGAGCTGCTCCGCAACCCGACCAAGATGGCGAAGGCGCGCGCCGAGCTCAGGGAAGCGTTCGGATCCGGCAA
CGCAGAGGAAGGTGACCTCGCCAACCTCCCGTACCTCCAGGCCGTGATGAAGGAAACGATGCGGCTGCACCCCCCAGCGC
CGCTGCTGCTGCCGCACGAGGTGTCGGAGACCGGCGTGACGCTCGGCGGCTTCTCTGTGCCGAAGGGCGCCCGTGTCCTG
ATCAACGTGTGGGCCATCGGAAGGGACCCCGAGGTGTGGGCCGAGCCGGAGGTATTCATGCCGGAGAGGTTCTTGGACAG
GGAGGTGGACTTCCGTGGGAGGGCGTTCGAGTTCATACCGTTCGGATCGGGGCGGAGAGCGTGCCCAGGGATGCCGCTGG
CCGTGACGGTCGTGCCCATGGTGTTGGCATCGCTGCTCCACGAGTTCGAATGGAGGCTGCCGGATGGGATGGTGCCGGGT
GATGTTGATCTCAGCGACCGGTTTGGCGCCGCGCTAGAGCTCGCCGTTCCTCTAAGGGCCGTGCCGGTTTGGACGAAAGG
CGCGGAGGATTTGAGTTTTTCTTCGTGACGAACTCGTTACTCGCTGACTACTTTTTCTTGATTTATTTTCAC---CAATG
TACTAAACATTTCACATTTGCATTCTTATTATAAGTGCACATTTTGTTCGTGTGAGTACTGTGTTGTAACTTTCTTTCAT
AGGAGGAGCTATGTTTATTTATGATTTTGTTATTAAAAAAAAGATCGGGGGCCAAACCGGTATGCACGCTCTAGCGGCCG
AACCCACGCTCTCCACT-CTCCACCCGACCGACCGCTGCCGCCACTGCCACCGC------AGATCTGTCCGTTGACCGAG
CTTGCCATGCCACTGTGTCGCGCCGCGTCTTATCGAGATGTCGTCTATCGCCATCTCCCCAAGGGAAATGACCATAACAT
CTCTCCATCTTTTCCAATATCGATGGGAGATCATGAAGAGGGGGATCCGATCTCGGACCCCATGGAGGATTTGGGGAAGC
CCATGCCGCCAGGCCACCTGCCGCTAGCGGCGAGACTTCGCAGGATTCACAACATCATTAGGCGGGAGGAGGCGTATGAT
AACATCCCACTGG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S-SS---S--------
-------------------------------------------------------------S--------------S---
S---------------S----------S---------------------------------------------------S
----------------------------------------------------------S------------SS-------
-------------------------------S------------------------------------------------
---------------------------S-----S----------S-----------------------------------
----------------------S---S----------------------S------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------SS----------------------------------------------------------------
-------------S--S---------------------------------------------------------------
----------S---------------------------------------------------------------------
-----------------S-------------------------S------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S------------------------------S-S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---S-S-------------------------------S-
----S-----------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------S-----------------------------
------S----------S-----------------S---------------S-------------------SSSS-----
------------------------------------------------S-------------------------------
----------------------S----------------------------------S------S---------------
------S--------------------------------------S--------SSSSSS----S-----S---------
--S-----------------------S--------S--------------------------------------------
------------S---------------------------------------------------------------S---
-S-S--S---S-S------S--------------------S-------S--S----------------------------
--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTGCCCTAACTGAACCGGTC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_1729
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GGCCGAACATCTCCGACTTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1131
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCTGCTGTG
CCTCCTATGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2940
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CAGATGTGGCCATTGACCGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
