>input_sequence_47210
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----------------------------------------ATGGACGCACCTTATCCACCCGCGCGGCAACCTAGCAGCA
AGCCCGCCGCTGCTCCACTCCGCTCCCCTGGCCGCGCCTCCAATCCCGGCCCTGCGCCTCCGCACGCGGCGTCGCTCCTT
CGCGGCGGCGCACCGCACGACGCCGGCGCGCTCCGGGCCGTTCTGAAGCGCCTGGCCACCGCGGCCTCGGCTCCCTGCGA
GGCCGCGCCGGCGCTGCACGCTCACTCCGCGAAGCTCGGCCTCTACCGTCACCACCGCGGCGTCCGCGACGCGCTCGTCG
GGCTTTACCTCGCGTGCGGCCGGCGCGGCGTCGCGTGCGACCTGTTTGCCGGCGCCGGAGGTGGCCCGGCGCCGGACGTG
ATTTCCTGGACGGCCATGGTGACGGGACACGCGCGTATGGGGCTGTTCCGCGAGGCCGCGGCGCTGTTCCTCGCTATGGC
GGACGACGGCGCGCTCGTCATCGACGCCGTGGCCGCCGCCGCGGCCTTCGCGGCCTGCGCCGGTGCCGGGGACCTCGCGC
TGGCCAGGGAGGTGCACCGGCGCGTCCTCAATGCGGGAGTGTCCCTCGACGTCGTCGCATGCAACGCGCTGGTCGACATG
TACGCCAAGTGCGGCGACGCGGCGGCCGCGCTCCGGTGCTTCCGTACGATGATGCCGACCAAGAACGTGGTGACCTGGAA
CACGATGATCTCCGCGCACGCGCGCGCGGGCGAGCTCCAGGAGGCGCTGGAGCTGTTCCGGGAGATGCTGCAGCAGCAGG
GCTGCGCGCCCTCGCCGCTTCCTGACGACGCAACGTTCGTCGCGGTCCTCTGCGCGTGCGCGCGGCTCGGCGCACTGGAC
GCCGGCAGGTGGGTGCACGCCTACATGGGCAGGACCGGACGGGATGCTGCCGACGGCGTCGTGGGCAACGCGCTGATCGA
CATGTACGCCAAGTGCGGGGCCGTCGAGCAGGCCGCGGAGGTGTTCGACGCAATGACGCGGCGAGACGTGTACACCTACA
CGTCCATGATCTCGGGGCTCGCGATGCACGGCCGGGGCGAGGAGGCGCTGGCGCTCTTCGGCGACATGCGGCGAGCCGGC
GTGAGGCCGAACGAGGTGACCTTCCTCGGCGTCCTCTCCGCCTGCTGCCACGCCGGAAACATCGAAGACGGTCTCCAGCA
TTTCGACGCCATGGCGGAGCAGCACGGCGTGGTGCCCGGCATCGAGCACTACGGCTGCGTCGTCGACATGCTCGGCCGCG
CCGGGAGGCTGGACGAGGCGGAGGATCTCGTCTCCGCGATGCCGATCCGGCCGGACGCGCTCGTCTGGGGCTCGCTGCTC
GCGGCCTGCCGAGCGCACGGCCATGTCGACCGCGCCGAGCGCGTGATGCGGCGCATGGCCGAGGACGAGGCCGACGCCGG
GGACTACGTGCTCATGTCGAATATGTACGCGCACGAGGGCCGGCACGGCAAGGCGGTGCAGGTGAGGCGGCAGATGAGGA
GAGGCAAGGTGGACAAGGTCCCCGGCTGCAGCCTCATCGAGATCGACGGCGTAGTGCACGAATTCCAAGCAGTTCCGGCG
AACTCCGTCGAAATCTCCGATGACGCATCAGATCTTTTTAGCTGA-----------------------------------
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>chr1A_1_TraesCS1A01G356700
TTGCACGAACCATGGCTCTTTTTCATGAATTTCAAAAAATGCTTTTCAGTTTGAAAAAAATCATAACTTCGAAAAAGATG
CTCGTGAGTTTGATAGAATGTTCACAAATTATAAATTGTCCTTGAATTTGAGTAATGTTCTAAAAATGTTCATGAATTGG
GAAATTGTTCGTGATTTTTGAAAAAAATTATGAATTCAATTTTTTTTTCATGATTTCCAAAAATATACAAAAAAATCAAA
ATGTAGAAATAGAAAAAAGAAAAGAAAAAACAGGAAAGAAAAGGAAAAACAAAAAAATGGAAAAAAATAAAGAAAAAACG
AGGAAAAAACAGAGAAAAGACCCAAAACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCCGCCAATCAAACATGCTAAGGGAATAATGTTTGGTGAATTACGTAGCA
TAGAGTTCGTAACTCTGGCATTAAAAATAAAAAAAATAGCAAAACACAAGAATTTGAACTTGCAATGTTTGATGCCCAAA
AAACCCAAAGGAAATGAAAAAACAAAGTTTCGAATGCATGCTAGAGTTCTCATAAAATGTACTAGTATAGTACAGAACTA
CAGATTATTCCTTTGGAAAAATCTTTTAGGATTCAATCCTATAAATCAAATGACCAACAATTCCTAAAGATTTTATAATT
CTCCAAAATGCGAGTTCCTTTGAATCACAGAGGCCTCAAAGGTTTTATTCCAAGCTTTACTTCTGGACGACATTTTCCAT
CCCGTCAGCTGGAGGGGAGGGAGGCGACGACGCCATCTCCATGGACGCACCTTATCCACCCGCGCGGCAACCTAGCAGCA
AGCCCGCCGCTGCTCCACTCCGCTCCCCTGGCCGCGCCTCCAATCCCGGCCCTGCGCCTCCGCACGCGGCGTCGCTCCTT
CGCGGCGGCGCACCGCACGACGCCGGCGCGCTCCGGGCCGTTCTGAAGCGCCTGGCCACCGCGGCCTCGGCTCCCTGCGA
GGCCGCGCCGGCGCTGCACGCTCACTCCGCGAAGCTCGGCCTCTACCGTCACCACCGCGGCGTCCGCGACGCGCTCGTCG
GGCTTTACCTCGCGTGCGGCCGGCGCGGCGTCGCGTGCGACCTGTTTGCCGGCGCCGGAGGTGGCCCGGCGCCGGACGTG
ATTTCCTGGACGGCCATGGTGACGGGACACGCGCGTATGGGGCTGTTCCGCGAGGCCGCGGCGCTGTTCCTCGCTATGGC
GGACGACGGCGCGCTCGTCATCGACGCCGTGGCCGCCGCCGCGGCCTTCGCGGCCTGCGCCGGTGCCGGGGACCTCGCGC
TGGCCAGGGAGGTGCACCGGCGCGTCCTCAATGCGGGAGTGTCCCTCGACGTCGTCGCATGCAACGCGCTGGTCGACATG
TACGCCAAGTGCGGCGACGCGGCGGCCGCGCTCCGGTGCTTCCGTACGATGATGCCGACCAAGAACGTGGTGACCTGGAA
CACGATGATCTCCGCGCACGCGCGCGCGGGCGAGCTCCAGGAGGCGCTGGAGCTGTTCCGGGAGATGCTGCAGCAGCAGG
GCTGCGCGCCCTCGCCGCTTCCTGACGACGCAACGTTCGTCGCGGTCCTCTGCGCGTGCGCGCGGCTCGGCGCACTGGAC
GCCGGCAGGTGGGTGCACGCCTACATGGGCAGGACCGGACGGGATGCTGCCGACGGCGTCGTGGGCAACGCGCTGATCGA
CATGTACGCCAAGTGCGGGGCCGTCGAGCAGGCCGCGGAGGTGTTCGACGCAATGACGCGGCGAGACGTGTACACCTACA
CGTCCATGATCTCGGGGCTCGCGATGCACGGCCGGGGCGAGGAGGCGCTGGCGCTCTTCGGCGACATGCGGCGAGCCGGC
GTGAGGCCGAACGAGGTGACCTTCCTCGGCGTCCTCTCCGCCTGCTGCCACGCCGGAAACATCGAAGACGGTCTCCAGCA
TTTCGACGCCATGGCGGAGCAGCACGGCGTGGTGCCCGGCATCGAGCACTACGGCTGCGTCGTCGACATGCTCGGCCGCG
CCGGGAGGCTGGACGAGGCGGAGGATCTCGTCTCCGCGATGCCGATCCGGCCGGACGCGCTCGTCTGGGGCTCGCTGCTC
GCGGCCTGCCGAGCGCACGGCCATGTCGACCGCGCCGAGCGCGTGATGCGGCGCATGGCCGAGGACGAGGCCGACGCCGG
GGACTACGTGCTCATGTCGAATATGTACGCGCACGAGGGCCGGCACGGCAAGGCGGTGCAGGTGAGGCGGCAGATGAGGA
GAGGCAAGGTGGACAAGGTCCCCGGCTGCAGCCTCATCGAGATCGACGGCGTAGTGCACGAATTCCAAGCAGTTCCGGCG
AACTCCGTCGAAATCTCCGATGACGCATCAGATCTTTTTAGCTGAC----------------------GAACACTGTAAA
TTCCACTGACTAGTATAACTAGCCTACAAAAACATCTACATTTTGAGACATGTAGTATCTTCCTGGAGATATATGAGAAA
AGGGTTTCCCCCGCTTCATATTATAAAGCAACGAAACAGGCATCCAACACATCAATACACAGTAAGAACAAGGTACAAAG
CCCTGTTTGGTTCGGTTGTGGATTTCTAAAAGCAGCTGTGAAAATTTTGCTGTGGAAAAACAGCTTTGAAAAATCTGATG
TGAAAAAGATGTAGGTCATTTGGCAAACCAGCTGATACAGTTTTTTTCAGATTTTGGCCCGCAGCGGAATCAGATTTTGG
AAAGCACATCCTGGGCTGCTTCTGCTTTTGGTTCAGATTTTGGCAGTGGATTTCTGAAATCGGATTCTGCCGGGTTCGCC
CTTTGGTTCAGAATCTTCTGCGTGACAGCGGAATCCATCGATAAAAACTGAACCAAACAGGGCCAAAATCATGCT-GGGG
CACAGCAGAACAAGCCCCAAAGAAATCT---AAAAAAGAGCTAATCCGGCTC-GAGGGT-----------GGTGGCGGTG
GAG------------CGAAAGCCGATGCCGCGAAACGAAGACCTGCCATAGTGTTGTCGATGATGTCACGGTCACACCGC
TTGCTAAGCGGTCTCCAGAGCTATAAAAAACCACACATTTTATAGATAGCATCAGTCACACGGCATGAAATGACATGCTC
GATGACTAGTTTATTGCGGGAACATCAAAGGGTCCAAGCAAGGGTGCCCAAAGCCACCCAAATTGGGGGG-CGGCT---A
GAACCGGGGAGTCTAAGGGTCTTCCCAAATAGGTCCGGGAGGTTGTCGTGGCATCAATTGCCGCCAACCACCTCCCGGAA
GCAGCTCCAAAGGAACTGTGCTACAAGGCACCGGAAGAAGATGTGGTTAC----AGTCTTTCGGGACCAAACAAATGGGA
CAGAGGACATCCC-AGGGCCGTTACGTTTCTTGACCTCCGTCCCCGACGGGAGACGGCCTCGGA
>chr1B_989
GAG-----------------------------------------------------------------------------
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-------------------------------GCCATCGCCATGGGTGCACCTCGTCCACCCGCGCGGCAAGCCAGCAAGA
AGCCTGCGGCTGCTCCACTCTACTCCCCTGGACGCGGCTACAAGCCCGGTACCGCGCCTCCACACGCGGCGTCACTCCGT
CGCGGCGGCGCACCTCACGACGCCGGCGAGCTCCGGGCTCTTCTGAAGCGCTTGGCCAACGCGTCCCCGGCACCCAGCGA
GGCCGCGCCGGCGCTGCACGCCCACGCCGCAAAGCTCGGCCTCGGCTGCCGCCACCGCGGCGTCCGCGACGCCCTCGTCG
CGCTCTACCTCGCCTGCGGCCGGCGCGGCATTGCGCGCGCCTTGCTGTC---CGCCGGTGGCGGCCCAGCGCCCGACGTC
GTTTCTTGGACGGCCCTGGTGACCGGCCACGCGCGGCTGGGGCTGTTCCGCGAGGCCGCGGCGCTGTTCCTTGCCATGGC
GGACGACGGCGCGCTCGTCATCGACGCGGTGGCGGCCGCCGCGGCGTTTGGGGCCTGCGCCGGTGCCGGGGACCTCGCGC
TGGCCAGGGAGGTGCACCGGCGAGTCCTCGAAGCGGGAGTGTCCCTCGACGTCGTCGCGTGCAACGCTCTGGTCAACATG
TACGCCAAGTGCGGCGACGCGGCGGCCGCGCTCCGTTTCTTCCGTGCGATGGCGCCGGCCAAGAACGTGGTGACCTGGAA
CACGATGATCTCCGCGCACGCGCGCGCGGGCGAGCTCCAGGAGGCGCTGGAGCTGTTCCGGGAGATGCTGCAGCAGCAAG
GCTGCGCGCCCTCGCCGCTTCCTGACGACGCAACGTTCGTCGCGGTCCTCGGCGCGTGCGCGCGGCTCGGCGCACTGGAC
GCCGGCAGGTGGGTGCACGCCTACATGGGCAGGACCGGACGGGATGCCGCCGACGGCGTCGTGGGCAACGCGCTGATCGA
CATGTACGCCAAATGCGGGGCCGTCGAGCAGGCCGCGGAGGTGTTCGACGCAATGACGCGGCGAGACGTGTACACCTACA
CGTCCATGATCTCCGGGCTCGCGATGCACGGCCGGGGCGAGGAGGCGCTGGCGCTCTTCGGCGACATGCGGCGAGCCGGT
GTGAGGCCGAACGAGGTGACCTTCCTGGGCGTCCTATCCGCCTGCTGCCACGCCGGAAACATCGAAGACGGTCTCCGGCA
TTTCGAAGCCATGGCGGAGCAGCACGGCGTGGTGCCGGGCATCGAGCACTACGGCTGTGTCGTCGACATGCTCGGCCGCG
CCGGGAGGCTGGACGAGGCGGAGGATCTCGTCTCCGCGATGCCGATCCGGCCCGACGCGCTCATCTGGGGCTCGCTGCTC
GCGGCCTGCCGGGCGCACGGCCATGTCGACCGCGCCGAGCGCGTGATGCGGCGGATGGCCGAGGACGAGGCCGACGCCGG
GGACTACGTGCTCATGTCGAACATGTACGCGCACGAGGGCCGACACGGCAAGGCGGTGCAGGTGAGGCGGCAGATGAGGA
GAGGCAAGGTGGACAAGGTCCCCGGCTGCAGCCTCATTGAGATCGACGGCGTGGTGCACGAGTTCCAAGCAGTTCCGGCG
AACTCCGTCGAAATCTCCGATGACGCATCAGACTTTTTTAGCTGAC----------------------CAACACTGTAAA
TTCCACTGACTAGTAAAGATAGCCTACAAAAGCATCTACATTTTGAGAC-------------------------------
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>chr1D_989
GAG-----------------------------------------------------------------------------
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-------------------------------GCCATCGCCATGGGCGCACCTCGTCCACCCGCGCGGCAAGCCAGCAAGA
AGCCTGCGGCTGCTCCACTCTACTCCCCTGGACGCGGCTACAAGCCCGGTACCGCGCCTCCACACGCGGCGTCACTCCGT
CGCGGCGGCGCACCTCACGACGCCGGCGAGCTCCGGGTCCTTCTGAAGCGCTTGGCCGACGCGTCCCCGGCACCCAGCGA
GGCCGCGCCGGCGCTGCACGCCCACGCCGCAAAGCTCGGCCTCGGCAGCCGCCACCGCGGCGTCCGCGACGCCCTCGTCG
CGCTCTACCTCGCGTGCGGCCGGCGCGGCATTGCGCGCGCCTTGCTGTC---CGCCGGTGGCGGCCCAGCGCCCGACGTG
GTTTCTTGGACGGTCCTGGTGACCGGCCACGCGCGGCTGGGGCTGTTCCGCGAGGCCGCGGCGCTGTTCCTTGCCATGGC
GGACGACGGCGCGCTCGTCATCGACGCCGTGGCCGCCGCCGCGGCGTTCGCGGCCTGCGCCGGTGCCGCGGACCTCGCGC
TGGCCAGGGAGGTGCACCGGCGCGTCCTAGAAGCGGGAGTGGCTCTCGACGTCGTCGCGTGCAACGCGCTGGTCGACATG
TACGCCAAGTGCGGCGACGCGGCGGCCGCGCTCCGTTGCTTCCGTGCGATGGTGCCGGCCAAGAACGTGGTGACCTGGAA
CACGATGATCTCCGCGCACGCGCGCGCGGGCGAGGTCCAGGAGGCGCTGGAGCTGTTCCGGGAGATGCTGCAGCAGCAAG
GCTGCGCGCCCTCGCCGCTTCCCGACGACGCCACGTTCGTCGCGGTCCTCGGCGCGTGCGCGCGGCTCGGCGCACTGGAC
GCCGGCAGGTGGGTGCACGCCTACATGGGCAGGACCGGACGGGATGCCGCCGACGGCGTCGTGGGCAACGCGCTGATCGA
CATGTACGCCAAGTGCGGGGCCGTCGAGCAGGCCGCGGACGTGTTCGACGCAATGACGCGGCGAGACGTGTACACCTACA
CGTCCATGATCTGGGGGCTTGCGATGCACGGCCGGGGCGAGGAGGCGCTGGCGCTCTTCGGCGACATGCGACGGGCCGGC
GTGAGGCCGAACGAGGTGACCTTCCTCAGCGTCCTCTCCGCCTGCTGCCACGCCGGAAACATCGAAGACGGTCTCCGGCA
TTTCGACGCCATGGTGGAGCTGCACGGCGTTGCGCCAGGCATCGCGCACTACGGATGCGTCGTCGACATGCTCGGCCGCG
CCGGGAGGCTGGACGAGGCGGAGGATCTCGTCTCCGCGATGCCGATCCGGCCCGACGCGCTCATCTGGGGCTCGCTGCTC
GCGGCCTGCCGGGCGCACGGCCATGTCAACCGCGCCGAGCGCGTGATGCGGCGGATGGCCGAGGACGAGGCCGACGCCGG
GGACTACGTGCTCATGTCGAACATGTACGCACACGAGGGCCGACACGGGAAGGCGGTGCAGGTGAGGCGGCAGATGAGGA
GAGGCAAGGTGGACAAGGTACCCGGCTGCAGCCTCATCGAGATCGACGGCGTGGTGCACGAGTTCCAAGCAGTTCCGGCG
AACTCCCTCGAAATCTCCGATGACGCATCAGACTTTTTTAGCTGACTGCATATCCTGCTTACGCTAACGAACACTGTAAA
TTCCACTGACTAGTGAACTA------------------------------------------------------------
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>chr3D_3079
GGCACA--------------------------------------------------------------------------
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-----------------------------------------------------------------AAGTCATGCT-GGGG
CACAGCAGAACAAGCCCCAAAGATAGCT---AAAAAAGAGCTAATCCGGCTC-AGGGGT-----------GGTGGCGGTG
GAG------------CGAAAGCCGATGCCGCGGAAGGAAGACCTGCCATAATGTTGTTAATGACGCCACGATCACACCGC
TTGCCAAGCGGTCTCCAGAGCCGTAAGAAGCCACACATTTTATAGATTGCATCAGTCACACTGCACGGAATGACATGCTC
GATGACTAGTTTATTGCGGGTACACCAAAGGGTCCAAGCAAGGGTACCCAAAGCCACCCAAATTGGGGGGGCGGCTAGGA
---CCGGGGAGCCGAAGGACCTCCCCAAATAGGTCTGGGAGGTTGTCGTGGTACCAATTGCCGCCAACCACCTCCCGGAA
ACAGCTCCAAAGGAACTGCGCTACAGGGCATCGGAAGAAGATGTGGTTAC----AGTCTTCCGGGACAAAACAAATGGGA
CAGAGGCCATCTCCAGGGCCATTACGTTTTCCGACCTCCGTCCCCGATGGGAGACGGCCTCGGA
>chr6D_3082
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---------------------------------------------------------------CAAAGTCATGCTGGGGG
CACAGCGGAACAAGCCCCAAAGAAATCT---AAAAAAGAGCTAATCCGGCTCGGGGGGT-----------GGTGGCGGTG
GAG------------CGAAAGCCGATGCCGCGGAATGAAGACCTGCCATAATGTTGTCGATGACGCCAGGGTCACACCGC
TTGCTAAGCGGTCTCCAGAGCTATAAGAAGCCACACATTTTATAGATTGCATCAGTCACACGGCACGGAATGACACGCTC
GATGACTAGCTTATTGCGGGAACACCAAAGGGTCCAAGCAAGGGTGCCCAAAGCCACCCAAATTAGGGGG-CGGCTAGGG
---CCAGGGAGCCTAAGGGCCTCCCCAAATAGGTCCGGGAGGTTGTCGTGGCACCAATTGCCGCCAACCACCTCCCGGAA
GCAGCTCCAAAGGAACTGAGCTACAGGGCACCGGAAGAAGATGTGGTTAC----AGTCTTCCGGGACCAAACAAATGGGA
CAGAGGCCATCCCCAGGGCTGTTACGTTTCCTGACCTCTGTCCCCGACGGGAGACGGCCTCGGA
>chr2D_3082
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---------------------------------------------------------------CAAAGTCATGCTGGGGG
CACAGCCGAACAAGCCCCAAAGAAATCT---AAAAAAGAGCTAATCCGGCTCGGGGGTGGTG------GAGGTGGCGGTG
GAG------------CGAAAGCCGATGCCGCGGAACGAAGACCTGCCATAATGTTGTCGATAACGTCACGGTCACACCGC
TTGCTAAGCGGTCTCCAGAGCTGCAAGAAGCCACACATTTTATAGATTGCATCAGTCACACGGCATGGAATGACATGCTT
GATGACTAGTTTATTGCGGGAACACCAAAGGGTCCAAGCAAGG-TGCCCAAAGCCACCCAAATTGGGGGG-CGGCTAGAA
---CCGGGGAGCCTAAGGGCCTCCCCAAATAGGTCCGGGAGGTTGTCGTGGCACCAATTGCCGCCAGCCACCTCCCGGAA
GAAGCTCCAAAGGAACTGCGCTACAGGGCACCGGAAGAAAATGTGGTTAC----AGTCTTCCGCGACCAAACAAATGGGA
CAGAGGCCATCCCCAGGGCCGTGACGTTTCCTGACCTCCATCCCCGACGGGAGACGGCCTCGGA
>chr3A_3082
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---------------------------------------------------------------CAAAGTCATGCTGGGGG
CACATCGGAACAAGCCCCAAAGAAGTCT-AAAAAAGAGAGCTAATCCGGCTCGGGGGTGGTGACGGTGGAGGTGGCGGAG
GAG------------CGAAAGCCGATGCCGCGGAACGAAGACCTGTCATAATGTTGTCGATGACGTCATGGTCGCACCGC
CTGCTAAGCGGTCTCCAGAGCTGTAAGAAGCCACACATTTTATAGATTGCATCAGTCACACGGTATGGAATGATACGCTT
GATGACTAGTTTATTGCCAGAACACCAAAGGGTCCAAGCAAGAGTGCCCAAAGCCACCCAAATTGGAGGG-TGGCT---A
GGGCCGGGGAGCCTAAGGGCTTCCCCAAATAGGTTCGGGAGGTTGTCATGGTACCAATTGCCGCCAACCACCTCCCGGAA
GCAGCTCCATAGGAACTGCGCTACAGGGCACCGGAAGAAGATGTGGTTAC----AGTCTTTCGGGACCAAACAAATGGGA
CAGAGGCCATCCCCAGGACCGTTACGTTTACTGACCTCCGTCCCCGACGGGAGGCGGCCTCGGA
>chrUn_3083
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----------------------------------------------------------------AAAGTCATGCTGGGGA
CACAGCGGAACAAGCCCCAAAGAAAGCT---ACAAAAGAGCTAATCCGGCTC-GGGGGT-----------GGTGGCGGTG
GAG------------CGAAAGCCGATGCCGCGGAACGAAGACCTGCCATAATGTTGTCGATGACGCCACGGTCACACTGC
TTGCTAAGCGGTCTCCAAAGCTGTAAGAAGCCACACATTTTATAGATTGCATCAGTCACACGGCACGGAATGACACGCTC
GATGACTAGTTTATTGCGGGTACACCAAAGGGTCCAAGCAAGGGTGCCCAAAGCCATCCAAATTGGGGGG-CGGCT---A
---CCGGGGAGCTTAAGGGCCTCCCCAAATAGGTCTGGGAGCTTGTCGTAGCACCAATTGCCGCCCACCACCTCCCGGAA
GCAGCTTCAAAGAAAGTGCGCTACAGGGCACCGGAAGAAGATGTGGTTAC----AGTCTTTCGGGACCAAACAAATGGGA
CAGCGGCCATCCCCAGGGCCGTTACGTTTTCTAACCTCCATCCCTGATGGGAGACGGCCTCGGA
>chr4B_3083
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----------------------------------------------------------------AAAGTCATGCTGGGGG
CACAGCGGAACAAGCACCAAAAAAAGCT---AAAAAAGAGCTAATCCGACTCG-----GGTG------GAGGTGTCGGTG
GAG------------CGAAAGCCGATGCTGCAGAACGAAGACCTGCCATAATGTTGTCGATGACGCCATGATCACACCGC
TTGCTAAGCGGTCTCGAGAGTTGTAAGAAGCCACACATTTTATAGGTTGCATCAGTCACACGGCACGGAATGACACGCTC
GATGACTAGTTTATTGTGGGTACATCAAAGGGTCCAAGCAAGGGTGCCCAAAGCCACCCAAATTGGCGGG-CGGCCAGGA
---CCGGGGAGCCTAAGGGCCTCCCCAAATAGGTCCGGGAGGTTGTCGTGGCACCAATTTCCGCCCACCACCTCCCGGAA
GTAGCTCCAAAGGAACTGCGCTACAGGGCACTGGAAGAAGATGTGGTTACGTACAGTCTTCCGGGACCAAACAAATGGGG
CAGATGCCATCCCCAGGGCCGTTACGTTTTCTGACCTCCGTCCCCGATGGGAGACGTCCTCGGA
>chr5D_3083
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----------------------------------------------------------------AAAGTCATGCTGGGGG
CACAGCGGAACAAGCCCCAACGAAGTCTAAAAAAAGAGAGCTAATCCGGCTCGGGGGGT-----------GGTGGCGGTG
GAGGTGGCGGAGGAGCGAAAGCCGATGTCGCGGAACGAAGACCTGCCATAATGTTGTCGATGACGCCATGGTCGCACCGC
TTGCTAAGCGGTCTCCAGAGCTGTAAGAAGCCACACATTTTATAGATTGCATCAGTCACACGGTATGGAATGATACGCTC
GATGACTAGTTTATTGCGGGAACACCAAAGGGTCCAAGCAAGAGTGCCCAAAGCCACCCAAATTGGGG-G-CGACT---A
GGGCCGGGGAGCCTAAGGGCTTCCCCAAATAGGTCCGGGAGGTTGTCATGGCACCAATTGCCGCCAACCACCTCCCGGAA
GCAGCTCCATAGGAACTGCGCTACAGGGCACCGGAAGAAGATGTGGTTAC----GGTCTTCCAGGGCCAAACAAATGGGA
CAGAGGCCATCCCTAGGGTCGTTACGTTTCCTGACCTCCGTACCCGACGGGAGGCGGCCTCGGA
>chr1D_3089
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----------------------------------------------------------------------ATGCTGGGGG
CACAGCGGAACAAGCCCAAA-GAAAGCT----AAAAAGAGCTAATCCGGCTCGGGGGGT-----------GGTGGCGGTG
GAG------------CGAAAGCCGATGCTGCGGAACGAAGACCTGCTATGATGTTGTTGATGGCGCCGTGATCACACTCC
TTGCTAAGCGGTCTCCAGAGCTGTAAGAAGCTACACATTTTATAGATTACATCAGTCGCACGGGATGGAATGACACGCTC
GATGACTAGTTTATTGCGGGAACACCAAAGGGTCCAAGCAAGGGTACCCAAAGCCACCCAAGTTGGGGAG-CGGCT---A
GGACCGGGAAGCCTAAGGACCTCCCCAAATAGGTCTGGGAGGTTGTCGTGGCACCAATTGCTACCAACTACCTCCCGGAA
GCAGCTCCATAAGAACTGCGCTACAGGGCACCGGAAGAAGATGTGGTTAC----AGTCTTCCGGGACCAAACAGATGGGA
CAGGGGCCATCCCCTGGGCCGTTGCGTTTTCTAACCTCCGTTCCTGACGGGAGACGGCCTCGGA
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------S-------SS----------------S-S----SS-
----S--S------------SS---------S----S--S---S-----SS-S--------S-----------S----S-
--------------S-------------S----------S-----------S------S----S--S----S---S----
---------------------S---S----S------------SS-S-S-S---------------------S-------
S---S------------------------S-S---S---S-S--S-SS-SSS------S--S-----S-----S------
S----S---------S-------S--S--------SS----------------------------------S--S-----
---------------------------------------------S----------------------------------
-----------------------------S-S--------------------------S---------------------
-----------------------------------S---------S-----S-----S----------------------
------------------------------------------------------------------------------S-
--------------------------------------------------S-----------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
------------------------------------S-------------------------------------------
----------------------------------------------------S---------S-----------------
-----------S-----------------------------------------S--------------------------
---------------------S--------------------S-------------------------------------
----------------------------------------------------S--------S------------------
--------------------------------SS----------------------------------------------
---------------S-SS------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------
------------------------------------------------------S-------------------------
--------------------------------S-----------------S------------S----------------
--------------------------S--S-----------------S-------------------S------------
--------------------------------------------------------------------------------
-S---------S-------S--S------------------------------S--------------------------
------------------S------S------------------------------------------------------
------S-----------------------S---------------------------------
>forward_972
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTTTCCAT
CCCGTCAGCTGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_2796
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAAAG
CCCTGTTTGGTTCGG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
