>input_sequence_47202
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---------------------------ATGTCGCCCGTGCACGTCCCGGAGCTCAGCAGCGGCGGGTCGGGGTCGGGGTC
GCTCACCCTGAACCCCGTGCAACGCGCGCTCACCCGGCTGTCGTCGTCGTCGGCCCTGACGCCCAGGTCGCCCCCGCCGT
CCTACGGGAGCATCGTCACCGTGCTCAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCTGGAACCATCCTCGCCTTC
CTCGAAGAGAAGCTCCAGGTGAGC---AATTAGCTTTTGCTCCCGTTGCACCCATGGTAGTTACTGC----AGGTGCACC
AGTTCTAATGGCTTTCTTGCTATTTTCTGTAGGAGCTCGATGGGCCGGACGTGAGGATCGCCGACTACTTCGACGTGATC
GCCGGGACGAGCACCGGGGGCCTGGTGACGGCCATGCTCACGGCGCCCGACGCCAAAGGACGCCCGCTCTTCGCCGCCAA
GGACATCAACAACTTCTACCTGGAGCACTGCCCAAAGATCTTCCCTGCCGTCTACGG-----------------------
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------CGGGCCCCTGGGCTTGCTCAGGAGCATGAGGGGGCCTAAGTACGACGGCCAGTACCTCCACTCCGTCGTGAAAG
AGCTCCTCGGCGAGATGCGGGTCGGCGAGGCGCTGCAGAACATAGTCATCCCCACCTTCGACATCAAGCTGCTCCAGCCC
ACCATCTTCTCCAGATACGACGTACGTGCATCATCATACATATGCATGGGCTCGTCGATTAGATGTTATTTCTCCATGCT
CATGCTTACGTGAGACGTG-------AATG-TACAGGCCCGGAACGACGTCTCCAAGAACGCTCTTCTGTCCGACGTCTG
CATCAGCACGTCGGCGGCACCTACTTACCTCCCCGGCCACCACTTCGAGACCAAGGACAAGGATGGCAAGCCCCGGGCTT
TCAATCTCATCGACGGAGGCGTTGCCGCAAACAATCCGGTGAGTGATAGATAAC---TGGTTTATGTCTCAGTCCCTTAA
AAAAACACTCCAAAGAATATAATGGAATTCTCATGACGTCCATCTACTACTGTGCTCTAA--------------------
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-------------------------------------------------------------------------TTTGATA
TATGTTGACATTG-GATACATGCAGACAATGTTGGCCATGACGGACGTGAGCAAGCAGATCCTGCTGGGCAACCAGGACT
TCTTCCCGATCAAGCCGGCCGACTACGGCAAGTTCATGGTGCTCTCCCTCGGCACCGGCTCCGCCAAGGTGGAGGAGAAG
TTCGACGCCGCCGCGTGCAGCAAGTGGGGGGTCCTCGGGTGGCTCTACAACCACGGCACCACGCCGCTCATCGACAGCTT
CAGCCAGGCCAGCGCCGACCTCGTCGACATCCAGGCGTCCGTGCTCTTCCAGGCGCTGCGCTGCGAGAAGCGCTACCTCC
GCATCCAGGACGACGAGCTCAAGGGCGACACCTCCTCCGTCGACGTGTCCACGCCGGAGAACCTCAACAGGCTCGTCCAG
GTCGGCAAGGCGCTGCTCAAGAGGAGCGTGTGCAGGGTGAACGTCGAGACGGGCAAGACCGTGCCCGACCAC---AATAG
AGGCACCAACGAGGAGGAGCTAGTCAGTTTCGCACGGATGCTCTCACAGGAGCGCAAGGCCAGGTTGCAGAAGAAGGGAG
TCAACGTCCCACAGTAA---------------------------------------------------------------
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----
>chr4B_1_TraesCS4B01G286600
ATATTGTGTGCCCGATTGTTATTGAGATTAACAAAATATTTAAAATTATAGTGAAAATGTACAATCTCCAATAACACAGT
GGGTATTAATATTTATATTTGTTAAGACGTGCGTTGCATGTGCCGCTTACTAGTTTT-----------------------
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------------------------------------------------------------------GTGAAAGGAACTCC
TTACGACGGTTTCCACACATTTCCGGGCAGAAAATTCTCGGCGCTCCTCAAGTCAAATAAGTTACACGTACGTACGC---
-----TCCATCCACAGCCGTGTACCGAGCCGCTGATGACCGAGGGTTGCGA-----GTGACCAAGACCAATATATGGC--
--------------------------------AGC----AGCAAGTGGCATCGA-CGATCGATCACTGGAATGGACAA--
------GCTGGCAGACCCTA----------CGCCTACG-----TTGCGTACGTATCCGGAGGAAGGAGAAAGCGAGAGGC
AGCAGCAGCAAA-GTGGCGGCTATCACAGGTTCACGGTGTACAATAATTCTACTGGAAAGGGGATGG-AACCCTGACCTG
ACAGAGTAAAAATATTGTTTTGCACATTGCTTTCGTGCGTGCGTGTCATGTTTGGTGCGGTCATCCACTCGAGGA-----
AACGAAAGAAATGGCGCGCGGTGCGGTGCGGTGCGGCGGTCAGGTCCGTCATGCCCC-----GGCCTCCCGCCTTACCGT
--GTATTACGTGCGGTGCGGATCACTTGAACGTACTTTTGACTCGCGGTGCGCCCATGCTTGATGCTTCGTCCCCGTTTC
CTCCCTCGGAACAGTCAGAGCTGCATGGCATGCGA-CGGTCGTACCTGCCCCATGGAACTCCCTGCCGGTCCGTTTCATT
AACCGGCCGGCGGCTATAAATACGGGCGCACGCCGGTGCGCCTAACCACAGTTCACAACT-----------------CAA
CACAGAGCCACAGAAGAGCAGCAT----CAAGAGACGAGCGGAGCAGATAAGGCAGCGACCTCCCAGGCTAACAC-----
--------CTGTAAAGAGAATCTTTGGTTCAGCAGCTCTCCTGT----ACGTGCCTAGCT----------GAAGCTCGAG
GGCACCGGCCGGTAGGAGGACACCAGCATGTCGCCCGTGCACGTCCCGGAGCTCAGCAGCGGCGGGTCGGGGTCGGGGTC
GCTCACCCTGAACCCCGTGCAACGCGCGCTCACCCGGCTGTCGTCGTCGTCGGCCCTGACGCCCAGGTCGCCCCCGCCGT
CCTACGGGAGCATCGTCACCGTGCTCAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCTGGAACCATCCTCGCCTTC
CTCGAAGAGAAGCTCCAGGTGAGC---AATTAGCTTTTGCTCCCGTTGCACCCATGGTAGTTACTGC----AGGTGCACC
AGTTCTAATGGCTTTCTTGCTATTTTCTGTAGGAGCTCGATGGGCCGGACGTGAGGATCGCCGACTACTTCGACGTGATC
GCCGGGACGAGCACCGGGGGCCTGGTGACGGCCATGCTCACGGCGCCCGACGCCAAAGGACGCCCGCTCTTCGCCGCCAA
GGACATCAACAACTTCTACCTGGAGCACTGCCCAAAGATCTTCCCTGCCGTCTACGG-----------------------
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------CGGGCCCCTGGGCTTGCTCAGGAGCATGAGGGGGCCTAAGTACGACGGCCAGTACCTCCACTCCGTCGTGAAAG
AGCTCCTCGGCGAGATGCGGGTCGGCGAGGCGCTGCAGAACATAGTCATCCCCACCTTCGACATCAAGCTGCTCCAGCCC
ACCATCTTCTCCAGATACGACGTACGTGCATCATCATACATATGCATGGGCTCGTCGATTAGATGTTATTTCTCCATGCT
CATGCTTACGTGAGACGTG-------AATG-TACAGGCCCGGAACGACGTCTCCAAGAACGCTCTTCTGTCCGACGTCTG
CATCAGCACGTCGGCGGCACCTACTTACCTCCCCGGCCACCACTTCGAGACCAAGGACAAGGATGGCAAGCCCCGGGCTT
TCAATCTCATCGACGGAGGCGTTGCCGCAAACAATCCGGTGAGTGATAGATAAC---TGGTTTATGTCTCAGTCCCTTAA
AAAAACACTCCAAAGAATATAATGGAATTCTCATGACGTCCATCTACTACTGTGCTCTAA--------------------
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-------------------------------------------------------------------------TTTGATA
TATGTTGACATTG-GATACATGCAGACAATGTTGGCCATGACGGACGTGAGCAAGCAGATCCTGCTGGGCAACCAGGACT
TCTTCCCGATCAAGCCGGCCGACTACGGCAAGTTCATGGTGCTCTCCCTCGGCACCGGCTCCGCCAAGGTGGAGGAGAAG
TTCGACGCCGCCGCGTGCAGCAAGTGGGGGGTCCTCGGGTGGCTCTACAACCACGGCACCACGCCGCTCATCGACAGCTT
CAGCCAGGCCAGCGCCGACCTCGTCGACATCCAGGCGTCCGTGCTCTTCCAGGCGCTGCGCTGCGAGAAGCGCTACCTCC
GCATCCAGGACGACGAGCTCAAGGGCGACACCTCCTCCGTCGACGTGTCCACGCCGGAGAACCTCAACAGGCTCGTCCAG
GTCGGCAAGGCGCTGCTCAAGAGGAGCGTGTGCAGGGTGAACGTCGAGACGGGCAAGACCGTGCCCGACCAC---AATAG
AGGCACCAACGAGGAGGAGCTAGTCAGTTTCGCACGGATGCTCTCACAGGAGCGCAAGGCCAGGTTGCAGAAGAAGGGAG
TCAACGTCCCACAGTAAATAACATTGGGTGGTTAATAGTAGC----------ATGTAGCTAAACTCACATTATTACGTGC
AAGGCAAATATAGGATAAGTCAATAGATGGTCGAACCACGGTAGGCTAGAAATATTGAACTGCCAAAGCTCAGACTCAC-
----------ATAGGTCTGGAAACAAGTTGTATAAGTGGGAGAATGAAATAAATAGCCAACTATTTATCGTGGGCACAAC
ATGAAATTTATCAGCCTATATTGGATCCTAG-------------------------------------------------
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-----------------------------------AAAATACACATTGGCTCCCGCGTCACTCTGCGGGGCGACATCTGA
AACCCAGCCGTTCCTGTCCACCGCCGAAGAGAGCTGACATGCAATCACTGCGATACTGCAAAATTTGGCATTCGTCATTT
TAAGA--ATATAACCCTTGTGTGTGACAAACATGCATAGGTAGTCATCAGTGTAGGAGTAATCCTTGTATATAAGGAACT
CATTAGGCGGAAATTCAATTTGGCTCCCGGGCCCAAATATTTTTTCAAATGTCAAAAAAATCAAGACAAATTTTTTATGT
GATTTTAGTCACACCAAATGCTACATGCAAATTTTAAGGCAAAAAGGTTAAGCACTTTGGCCTGTGCACAAAAAAAAATT
TGAAGACCAAATGTCACCTAAATTTGTTTTTTCTTTTCCCAGACGAAACACTACCACTCCATTTCGCATAAATTTGTCAA
GCGTTTTTTCTTTTCACAGACGAAACACTACCACTCCATTTCGCATAAATTTGTCAAGTATGCTTGCGACGCTAACATCT
ACAACAAATATTCAGATTTTTTTTTGATTTTTTGTTACCCACTCGGTATGTTTGCTGTACCAAGATGTACCAATAACAAT
AAGTTGAAGGATGGGAGATAGGGTGGACGAGGATCAAGACGCGGTAAGGGCGAGGCAGCTAGAGTTCAGTGGGAGGAGAG
CATGTTTCTAGTTTTATATGTTGGGCAGTGTCAGCGCATGGTAAACCGAGAAAAATCGGTTATATAAACCAAAAAAAAGG
GAGA
>chr4A_1
ATATTGTGTGCCCGATTGTTATTGAGATTAACAAAATATTTAAAATTATAGTGAAAATGTACAATCTCCAATAACACAGT
GGGTATTAATATTTATATTTGTTAAGACGTGCGTTGCACGTGCCGCTTACTAGTTTT-----------------------
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------------------------------------------------------------------GTGAAAGGAACTCC
TTACGACGGTTTCCACACATTTCCGGGCAGAAAATTCTCGGCGCTCCTCAAGTCAAATAAGTTACACGTACGTACGC---
-----TCCATCCACAGCCGTGTACCGAGCCGCTGATGACCGAGGGTTGCGA-----GTGACCAAGACCAATATATGGC--
--------------------------------AGC----AGCAAGTGGCATCGA-CGATCGATCACTGGAATGGACAA--
------GCTGGCAGACCCTA----------CGCCTACG-----TTGCGTACGTATCCGGAGGAAGGAGAAAGCGAGAGGC
AGCAGCAGCAAA-GTGGCGGCTATCACAGGTTCACGGTGTACAATAATTCTACTGGAAAGGGGATGG-AACCCTGACCTG
ACAGAGTAAAAATATTGTTTTGCACATTGCTTTCGTGCGTGCGTGTCATGTTTGGTGCGGTCATCCACTCGAGGA-----
AACGAAAGAAATGGCGCGCGGTGCGGTGCGGTGCGGCGGTCAGGTCCGTCATGCCCC-----GGCCTCCCGCCTTACCGT
--GTATTACGTGCGGTGCGGATCACTTGAACGTACTTTTGACTCGCGGTGCGCCCATGCTTGATGCTTCGTCCCCGTTTC
CTCCCTCGGAACAGTCAGAGCTGC--------------------------------------------------------
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----
>chr4D_133
GTTC----------------------------------------------------------------------------
--------------------------------------------------------T-----------------------
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------------------------------------------------------------------GTGAAAGGAACTCC
TTACGACGGTTTCCACACATTTGCGGGCAGAAAATTCTCAGCGCTCCTCAAGTCAAATACGTTACACGTACGTACGTACG
TACGTTCCATCCACAGCCGTGTACCGAGCCACTGATGACCGAGCTAGGGTTGTGTTGTGACCAAGACCAATGTATGGCGG
TCGTATCCGGCTGAACAAACGAAGCGAAAGTCAGC----AGCAAGTGGCATCGATGGATCGGTCACTGGAATGGACAA--
------GCTGGCAGGAACCATGTACACGTTCGCCTACG-----TTGCGTGTCCGGAC-GAAGAAGAAGAAAGCGAGAG--
-GCAGCAGCAAA-GTGGCGGCTATCGCGGTTTCACGGCGTACAATAATTCTACTGGAAAAGGGATAGAAACCCTGACCTG
ACAGAGTAAAAATATTGTTTTGCACATTGCTCTCGTGCGTGCGTGCCATGTTTGGTGCGGTCATCCACTCAAGGATCGGA
GAGGCAAGAAATGGCGC-----GCGGTGCGGTGCGGCGGTCAGGTCCGTCATGCCCCTCCCG-----------TCCCGTG
TAGTATTACGTGTGGTGCGGATCACTTCAACGTACCTTTGACTCGCGGTGCGCCCATGCTTGATGCTTCGTCTCCGTTTC
CTCCCTCGGAACAGTTAGAGCTGCATGGCATGCGA-CGGTCGTACCTGCCCCATGGAACTCCCGGTCCGTTCCATGATCG
AACCGGCCGGCGGCTATAAATACGGGCGCACGCCGGTCCGCCTAACCACAGTTCACAAAGCGCAACACAACACAACACAA
CACAGAGCCACACAAGAGCAGCTAGCAGCAAGAGACGGGCGCAGCAGATAAGGTAGCGACCTCCCACCTGTAAACAGGTT
CGTGCCTTCTGTAAAGAAAATCTTTGGTTCACCAGCTCTCCTGGCTGCACGTACCTAGCT----------CAAGCTCGAG
GGCACCGGC-----------------CATGTCGCCCGTGCACGTCCCGGAGCTCAGCAGCGGCGGGTCGGGGTCGGGGTC
GCTCACCCTGAACCCCGTGCAGCGCGCGCTCACCCGGCTGTCGTCGTCGTCGGCCCTCACGCCCAGGTCGCCCCCGCCGT
CCTACGGGAGCATCGTCACCGTGCTCAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCCGGAACCATCCTCGCCTTC
CTCGAAGAGAAGCTCCAGGTGAGC---AATTAGCTTCTGCTCCCGTTGCACCCATGCTAGTTACTGC----AGGTGCACC
GGTTCTAATGGCTTTCTTGTTATTTTCTGTAGGAGCTCGATGGGCCGGACGTGAGGATCGCGGATTACTTCGACGTGATC
GCCGGGACCAGCACCGGGGGCCTGGTGACGGCCATGCTCACGGCGCCCGACGCCAAAGGACGCCCGCTCTTCGCCGCCAA
GGACATCAACAACTTCTACCTGGAGCACTGCCCAAAGATCTTCCCTGCCGTCTACGG-----------------------
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------AGGGCCTCTGGGCTTGCTCAGGAGCATGAGGGGGCCCAAGTACGACGGCCAGTACCTCCACTCCGTCGTCAAAG
AGCTGCTCGGCGAGACGCGGGTCGGCGAGGCGCTGCAGAACATAGTCATCCCCACCTTCGACATCAAGCTGCTCCAGCCA
ACCATCTTCTCCAGATACGACGTACGTGCATCATGATA--TTTCCTACGTGAATTGCG-----TGTTATTTCCTCTGCGT
CGTGCTTACGTGAGGCATG-------CAATATCCAGGCCCGGAACGACGTCTCCAAGAACGCTCTTCTGTCCGACGTCTG
CATCAGCACGTCGGCGGCGCCTACTTACCTCCCCGGCCACCACTTTGAGACCAAGGACAAGGATGGCAAGCCCCGGGCAT
TCAATCTCATCGACGGAGGCGTTGCCGCAAACAATCCGGTGAGTGATAG-------TTGGTTTATGTCTCAGTCCCTTAA
AAAA-CACTCCAAAGAATACAATGGAATTTCTATGACGTCCACG---TACTGTGCTCTAT--------------------
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-------------------------------------------------------------------------TTTG--A
TATGTTGACATTG-GATACATGCAGACAATGTTGGCCATGACGGACGTAAGCAAGCAGATCCTGCTGGGCAACCAGGACT
TCTTCCCGATCAAGCCGGCCGACTACGGCAAGTTCATGGTGCTCTCCCTCGGCACCGGCTCCGCCAAGGTAGAGGAGAAG
TTCGACGCCGCCGCGTGCAGCAAGTGGGGGATCCTCGGATGGCTCTACAACAAGGGCGCCACGCCGCTCATCGACAGCTT
CAGCCAGGCCAGCGCCGACCTCGTCGACATCCAGGCGTCCGTGCTCTTCCAGGCGCTGCGCTGCGAGAAGCGCTACCTCC
GCATCCAGGACGACGAGCTCAAGGGCGACACATCTTCCGTCGACGTGTCCACGCCCGAGAACCTCAACAGGCTCGTCGAG
GTCGGCAAGGCGCTGCTCAAGAGGAGCGTGTGCAGGGTGAACGTGGAGACGGGCAAGACCGTGCCTGATGAC---AATAG
AGGCACCAATGAGGAGGAGCTAATCAGTTTTGCACGGATGCTGTCGCAGGAGCGCAAGGCCAGGCTGCAGAAGAAGGGAG
TCACCGTCCCACAGTAAATAACATTGGATAGTTAATACTGTAGCATATACGTATATAGCTAAACTCG---TATTACGTGT
AAGGCAAAT-TAGGAAAAGTCAATAGACGGTCGAACCATGGTAGGCTGGAAATATTGAACTGCCAAAGCTCAGAGACTTA
TGTGAATTTTAGAGGTCCCCAAAGAAGTTGTA-AAGTGGGAGAATGAAATAAATAGCCAACTATTTATTGTGGGTACAAC
ATGAAATTTATCAGCCTATATTGGATCCTACTTCCTCCGTTTCTAAATATAGGTCTTTCTAGAGATTTCAACAAGTGACT
ATATACGGAGCAAAATGAGTGAATCTATTTTCTAAAATATGTCTATATACATCCGTATGTGGTAGTCCATTTGAAATCCC
TAAAAAGACTTATATTTAGGAACGGAGGGAGTAGAAAAATACACATTGGCCCCCGCGTCACTCCGCAGGGCGACATCTGA
AACCCAGCCGTTCCTCGCCACCGCCAGGCGA-------------------CGATACTGCAAAATTTGGTATTCATCATTT
TAGGA--ATAAT--CCTTGTGTGTGACGAACATGCATGTAC---------TGTAGGAGTAATCCTTATACATAAGGAACT
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----
>chr4A_133
TCATGTCCGGTGCGGTCATCCACCGAGGGAAAGGAAAGAAAAATGGCGCGCGGTGCGGTGCGGCGGTCAGGTCCGTCACG
CCCCTTCCCATCCCGCGTGCGGATCAAACTTGAACGTTCTTTTTCCATGCTTCGTCTCCGTACCGGCGCGGGCTGGGCTG
GGCCTCTAATGCTACTAGTTGGTTCGGCCTGGCACTGCAGCAGGCACAATACAAGAGCTACAATGCTCTCTTTTTAATTT
TATTTTTATTCTGTTTCCCTTAATGTTTGCTGCTGATTTAAATTCAAATGAGGGTTTACTTCCCACCTGAAAAACCTGTA
AATTCCTGTCTAATCTCACTGGTGCAACCCAGCACACACAACAAATTTCACAAGTTTTGGAGATTATGTTTTTATTTCTA
AACATATAATCCCAATTTGATTATGTTTTTATTTCATAAGTTCAGGGTTTTACCAATTTGATTAATAATTCTTAGAAAAT
TTATTATAGCTTCCAAATATTATTGGAGGATTAGATTCAAACTTTTAAGAGATTTCACAACGTAAAATCCCTCCTCCTAG
ATAGATCCAAGATTATCATTTTATTTATTTAGGTTCTAATTAAGATTTCCAAAATTATTTTATACTCCATCCGTTATTGT
CTACAACAAGGTCACTTTGTTTTCATGCCAAACTTTAACTTGTATATTTTGGTCGTCAAAATATGGATTATATCAACAAT
ATATCATCAAAAGGTTATTTGTAATATGCATCAAGGGCATGCTTTTTGTGGCATATAACTCACATCTTTTTGGTAGCTTA
ATGTACAAAGTTAGACATAAAATGTGAAGAGACCTTGTATATATAACGAGGGAGTACCATTCTTAAACCTTTGTAAAGAT
TGAGAGGATCCATATCATACACACACACACACATATATATATATATATAGTAAATTCAAAACTTGCATAGTAAAAAAATT
ATTTCAAAATTACTACATTTTATACAGTGTTTTACTAGATTTTGTACATAGCGTTACTGGGGTGTAGAATAAGCTATTCT
ACACTCACGCTTAGAATAGCGTAACCCTTTTATACAGTGTTTTACTAGATTTTTGTACATAGCGTTACTGGGGTGTAGAA
TAAGCTATTCTACACTCACACTTAGAATAGCGTAACCCTATATATATATATATATAATATAGTGCTACTGGTTGCGGCCA
AGGACACACCTAAAACACCTAGGGTTTTACCTCATCTCGCAAATTGCACTACCATCATAGTCTACTTCATACCTAACGCC
GACGTGCATCGGTGTGCGGGAGAGCAGGTCTCTGAAACCGTTCATCCTTGATCCTGCTCCGGGAGAGGACGAATTAGGTT
TTTGGGAAGCGCTTGGCGCGACTGCTCAAGTTCGTCATCACGGGTCGTCTTCCATCCAAGTCGGACGGTGCTACTCATCG
TCGTCTTCATCGCCATCAACAACAGATCGTCGCCAACACCGTCATCAACTCTGCTGCTCCTTCAGCAACTAACGAACAAT
ACGTTCTACGTGTTATGTTCATGTCTCTCCTCGTAGTTGCTACTTCATGAGTGATGCCGGGGTACATGTTTATTTAGCTG
TTCATCTAGTTTGTAAGACTGTTACATGCTAGTCTTTGTTTTAGTCATGAATTATTTACTAGAATTAATCATGAATTTAC
CTAATATTCCAACAGCAAACATCTCGAGAAACAATCGCTTTCCCAGCCTTGCCAAAAGAAAAGGAAAAAAAACTTGCACA
CATTTGAGCATCGCTTCCCCAGCCCTGCCACGAAGTCACCAACTAGCCAAAAAAAAAAAAGTCAACGGTCAAAACCCAAA
AGAGTACACGAGGAAAGAAGAGATGAGTGACAGAGAAGCACGCGATAGCTACATCTCTGTGCCTCTCTCCGTGTCTGCTA
ATTAGCTCCTACTATAGCTCGCTTGGTCAGGTTTGCTTAGTAGCAAAAATTACATTAATCTTCATTTATCAATTTTAATA
ACCGTGGCAGTTTGATTTTTCTGTCTGCAGACGATCGAGGACGTCCGCTTGCATCCCCAGTTTCGGTCCATATACATATG
GAGGTTTCTCCTACTAAGTGGTTGCAGATAAAAACAACCTTGTAAACTGTAGCTCGTCGCCGTTCTGTGAAAGGAACTCC
TTACGACGGTTTCCACGCATTTCTG--------------AGCGCTCCTCAAGTCAAATACGTTACACGTACGTACGTAC-
---GTTCCATCCACAGCCG------------CTCATGACCGAGGGTTGCGA-----GTGACCAAGACCAATGTATGGCGG
TCGTATCCGGCTGAACAAATGGAGCCAAAGGCAGCAGCTAGCAAGTGGCACCGATCGATCGATCACTGGTTTACACGCGT
TCGCTCGCAGGCAGGCCCTA----------CGCCTACGCTACGTTGCGTACGCATCCGGAAGAAGAAGAAAGCGAGAGGC
AGCAAACCGTGAGGTGGCGGCTATCACAGTTTCACGGCGTACAC----------------------G-AACCCTGACCTG
ACAGAGTAAAAATATTGTTCTGCTCATTGCTATCGTGCGTGCGTG-CATGTTTGGTGCGGTCATCCACTCAAGGA-----
GAGGAAAGAAATGGC-----------------GCGGCGGTCAGGTCCGTCATGCCCCAACCTGGCCTCCCCCCTCCCATG
TAGTAGTACGTGCGGTGCGGATCACTTCAACGTG-CTTTGACTCGCGGTGCGCCCATGCTTGATGCTTCGTCTCCGTTTC
CTCCCTCGGAACAGTCAGAGCTGCATGGCATGCGAGCGGTCGTACCAGACCG------------------CCGTTCCATT
ACCCGGCCGGCGGCTATAAATACGGGCGCACGCCGGTCAGCCTAAGCACAGTTCACAAAGCGCAACACAACACAACACAT
-----AGCCACAGAAGAGCAGCTAAGG---------------------------------------------CAC-----
--------CCGTAAAGAGGATCTTTGGTTTAGCAGCTCTCCTGT----AAGTTCGTACTACCTAGCTGAAGAAGCTCGGG
GGCACCGGCCGGTCGGAGGACCCCAGCATGTCGCCCGTGCACGTCCCGGAGCTCAGCAGCGGCGGGTCGGGGTCGGGGTC
GCTCACCCTGAACCCCGTGCAGCGCGCGCTCAGCCGGCTGTCGTCGTCGTCGGCCCTCACGCCCAGGTCGCCCCCGCCGT
CCTACGGGAGCATCGTCACCGTGCTCAGCATCGACGGCGGCGGCGTCCGCGGCATAATCCCCGGAACCATCCTCGCCTTC
CTCGAAGAGAAGCTCCAGGTGAGTAGTAATTAGCTTCTGCTCCCGTTGCACCCATGGTAGTTACTGC----AGGTGCACC
GGTTCTAATGGCTTTCTTCTTATTTTCTGCAGGAGCTCGATGGGCCGGACGTGAGGATCGCCGACTACTTCGACGTGATC
GCCGGGACAAGCACCGGGGGCCTGGTGACGGCCATGCTCACGGCGCCCGACGCCAAAGGACGCCCGCTCTTCGCCGCCAA
GGACATCAACAACTTCTACCTGGAGCACTGCCCGAAGATCTTCCCCGCCGGCTACGG-----------------------
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------CGGGCCTCTGGGCTTGCTCAGGAGCATGAGGGGGCCCAAGTACGACGGCCAGTACCTCCACTCCGTCGTCAAAG
AGCTGCTCGGCGAGACGCGGGTCGGCGAGGCGCTGCAGAACATAGTCATCCCCACCTTCGACATCAAGCTGCTCCAGCCA
ACCATCTTCTCCCGATACGACGTACGTGCATCATGATATATTTCCTACGTGAACTGC-----ATGTTATTTCCTCTGCGT
CGTGCTTACGTGAGGCATG-------CTTG-TCCAGGCCCGCAACGACGTCTCCAAGAACGCTCTTCTGTCCGACGTCTG
CATCAGCACGTCGGCGGCGCCTACTTACCTCCCCGGCCACCACTTCGAGACCAAGGACAAGGATGGCAGGCCCCGGGCCT
TCAATCTCATCGACGGAGGCGTTGCCGCAAACAATCCGGTGAGTGATAGTAGACAGTTGGTGTATGTCTCCGTTCCTTAA
AAAG-CACTCCAAAGAATATAATGGAATTTCGATGACGTCCATC---TACTGTGCTCTAT--------------------
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-------------------------------------------------------------------------TTTG--A
TATGTTGACATTG-GATACGTGTAGACAATGTTGGCCATGACGGACGTGAGCAAGCAGATCCTGCTGGGCAACCAGGACT
TCTTCCCGATCAAGCCCGCCGACTACGGCAAATTCATGGTGCTCTCCCTCGGCACCGGCTCCGCCAAGGTGGAGGAGAAG
TTCGACGCCGCAGCGTGCAGCAAGTGGGGGATCCTCGGATGGCTCTACAACCACGGCGCCACGCCGCTCATCGACAGCTT
CAGCCAGGCCAGCGCCGACCTCGTCGACATCCAGGCGTCCGTGCTCTTCCAGGCGCTGCGCTGCGAGAAGCGCTACCTCC
GCATCCAGGACGACGAGCTTAAAGGCGACACCTCATCTGTTGACGTGTCCACGCCGGAGAACCTTAACAGGCTCGTCGAG
GTCGGCAAGGCGCTGCTCAAGAGGAGCGTGTGCAGGGTGAACGTCGAGACCGGCAAGACCGTGCCCGACGAC---AATAG
AGGCACCAACGAGGAGGAGCTAATCGGTTTCGCACATATGCTCTCACAGGAGCGCAAGGCCAGGTTGCAGAAGAAGGGAG
TCACCATCACACAGTAAACATGTGTAGTTCA-------TAAC----------ATATAGCTAAACTCA---TATTACGTGT
AAGGCAAATATAGGATAAGTCATTAGACGGTCGAACTTTGGTAGGCTAGAAATATTGAACTGCCAAAGCTCACAGACTTA
TGCAAGTTTTAGAGGTCCGCAAACAAGTTGTA-AAGTGGGAGAATGAAATAAATGGCCAACTGTATATTGTGGGCACGAC
ATGAAATTTATCAGCCTATATTGGATCCCAG-------------------------------------------------
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-----------------------------------AAAATACACATTGGCCCCCACGTCACTCCGCGAGGCGTCATCTGA
AACCCAGACGCTCCTTGCCACCGCCGAATAGATGACGGGCATC--CACTATGACACTGCAAAATTTGGCATTCGTCATTT
TAGGAATATAAT--CCTTGTGTGTGACGAACATGCATAGGTAGTCATCATCGTAGGAGTAATCCTTGTGTATAAGTACCT
CACTA---------------------------------------------------------------------------
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>chr4A_1112
ACT-----------------------------------------------------------------------------
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-------------------------------------------------------------CCCAAGTCGCCGCCGCCGG
CGTACGGGAGCATCGTCACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCCGGGACTATCCTAGCTTTC
CTCGAAGAAAAGCTCCAGGTAACTCACTTTTCTGACCTGCATCACCCTGCTGCTATACAGGAGTCTACTGTTGATGGACC
GTCTCTATCTCTATA--------------CAGGAGTTTGATGGACTGGACGCGAGGATCTCAGACTACTTCGACGTGATG
GCCGGGACGAGCACCGGAGGGTTGGTGACGGCCATGCTCACCGCGCCCAACGCCGACGGCCGTCCGCTCTTCGCCGCCAA
GGACATCAATCGCTTCTACTTGCAACACTGCCCAAATATCTTCCCTCCGGTCAGGTCAGCAAGTCTATATTTTTTTTATA
CATGGTATTTTATTGATTTATAATATACGCTCATAACTAAGATGTGTGCACACAACTGCGAGTGAGTCCATATACTATAT
AATCATATACTATATAATCATCATAACTCGCTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATATCAACATCATACACATGAATG--------------TGAGCCCTTTGTAGCACTATTCTTTATTTGGGGGT
CTGGCAAGTTATTGAAGTGGATTGTTTCGTTTTGGTTTGATCTATGTTGTCTTGGGTTTTAATTATGTAATGGTAGTGTT
TTATCATTCATATATCATGATGGGGGTGCTGCTAGAGACTTTTTTTTTCCTGAGAAGAGAGTAGAGTTGTTTGGTGCGTG
GTTATTGTGTCCAT--ACATTTCGATCTTGGTGTGATTGTCTGTGAGACTTTTGGGCTGGCCCGCAAAGCTCCCACCCGC
TCAGCTCGACTCCCTGCTCAACTTGCTTGCTTAGCATTTTTTCCATCTCGCTCCGCTGCTATCGTACAATAAGCTCGCTA
TCATTTTATATTTGAAAAATTCATTAAATTTAAAGACGTTCACGGA----TTTTAATTTTTTTGGATTTTTTAAAATTTT
CCAAATTAAA-AAACATGAATTTTAAAAA-TGTTCAGATATTTAAAATATTTCCATAGATTGGAAAAATATATTAACAAA
TCTGAAATAGAGTTCACATATTAAAAAAAACAAACTTTGGAAATGTTCATGAACCTTTAAAGTATTAATAAATTTATTTA
TTTCTTGGGTTTATGAAAATGTTTACAATTTTTTAAAGTGTTCTCATATTTAAATAAATGTTGATGAATTCAAATGTGAA
AAAAATAAAACAAGGAAAAGTAAACCAATTAATACTAAAAGAATAAACAAACATGAACCATCAACCAACGACACACACCG
TCATGGTTGTGGCCAGCTATCCCGCTCCCACACTCACGATG--CACCGGGGGCTCCGAATCTAGAGAGCTTAATACGTTA
CTAGGATTTAGAAAATGTTCCAACCACGAATTGTA--------AAACAAATGTTTGGATATTTATAAAATATTCATGGAT
CTGAAAATATATTTACAAATTTGAAATAAAGTTCACAAATTTAAAAA-TATCCACAAACTTTAAGAATGTTCATGAACTT
CAGAAATACTCATAAATTTAATTTATTATTGAATTTGCAAAAATGTTCATAGCTTTCAAAAATTTCACAAAAATAAAATT
AATAAATATAAAAAATGAAAATATTAAATAGAAAAAACAAACAGGAAGCAACAACACACAACCTCACTGGCGGAGCCAGT
GATCCCCACAAACCACGACCCACCTGTATGCTCCAATCAGGAGAGCTTATAGTATCTTAATAGATGATCAACCATGTTTG
TAGCAAAGGGCCTTTCGGGTTGTTGAAGACCATGACCGGACCAAAGTACAACGGTGAGCACCTCCGCTCGGTCGTCAAGG
AGCTGCTCGGCGACACGCGAGTCGATCAGACGCTTTCAAACATTGTGATCCCCACCTTCGACATAAAGCTTCTGCAGCCT
ACAATCTTCTCAACTTACGATGTATGTTATAAACAGAAACCTATGGGGCTACGTCCATGTCTGACTCTATCTCTCTCTCT
GTGCGCATTGCTAATTACCTAATTAAAATG-TGCAGGCCATGAAGGATGTCTCCAAGAACGCTCTTCTATCAGATGTCTG
CATCGGCACGTCTGCCGCACCGACCTACCTCCCCGGCCACCATTTTGAAACGAAGGATGAGGAGGGTAAGCCACGAGCCT
TCAACCTCATCGACGGAGGTGTCGCGTCAAACAATCCGGTGAGTTGTGCATGCATG--------------------TCAA
CTCG-AACAACAATGAATGTGATTGAGGCTTGATGAGACTTAGCTAACAACCTCTATTAATTAGGCTTATAAGTACGTTG
TTCTGTTAAAACACATCAATTAGCTCATCACTTATCTATAATTAGCACTATATTTGTATAGTGTGTGTCAACCCACCTTA
CTTACATCCCTAATCTACAACGCTAACCTATGTGGTACGATTATATGTTGTGGTATCAAAGCATTGTTCTCTATCTA--A
TATTTGAAAAATGTCATGGGTACAGACGTTGCTGGCAATGACCGACGTGAGCAAACAGATATTGATGGGAAACCCTGACT
TCTTTCCTATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGGGCACTGGAGCGGCTAAGATCGAGGAGAAG
TTTGACGTTGCCCAGTGCAGCAAGTGGGGCGTCCTCGGGTGGCTCTACAACAGGGGTGCCACTCCCATCATCGACAGCTT
CAGCCAGGCTAGTACCGACCTCGTCGACATCCATGCCTCTGTGCTTTTCCAGGCGCTTCACTGCGAGAAGCGCTACCTCC
GGATCCATGACGATGGGCTCAATGGTGAAACAGCCTCTGTTGATGTGTCCACGCCGGAGAACCTCAACAGGCTCGTTGAA
ATTGGCAAGTCGTTGCTGAAGAGGCAGGTGTGCAAGGTGAACGTCGAAACCGGCAAGAACGAGCTTGACTCGAAGAATAG
GGGCACCAACGAGGAGGAGCTGATCTATTTCGCAGGCATGTTATCGGAAGAGCGCAAAGCCAGG----------------
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>chr4A_1115
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-------------------------------------------------------------CCCAAGTCGCCGCCGCCGG
CGTACGGGAGCATCGTTACCGTGCTGAGCATCGACGGCGGCGGCGTCCGCGGCATCATCCCCGGGACTATCCTAGCTTTC
CTCGAAGAAAAGCTCCAGGTAACTCAGTGCTCTGACCTGCATCACCCTGCTGCTTGCGCC-TACTGC----TGATGGACC
GTCTCTATCTCTATA--------------CAGGAGTTTGATGGACCGGACGCGAGGATCTCAGACTACTTCGACGTGATG
GCCGGGACGAGCACCGGAGGGTTGGTGACGGCCATGCTCACCGCGCCCAACGCCGACGGCCGTCCGCTCTTCGCCGCCAA
GGACATCAATCACTTCTACATGGAACACTGCCCAAATATCTTCCCACCGGTCAGGTCAGCAAGTCTATATTTTTTTTATA
CATGATATTTTATTGATTTATAATATACAGGCAAAACTAAGATGTATGCACGCAACTGCGAGTGAGTCCATATACTA---
----------TATATAATCAGCATAACCCGCTAATATTATATTATATTATTATT------------------ATAAAAGT
TATTATTATATCAGCATCATACACATGAATTATACTAGAGGATAATGAGCGCTTCGTCGCGCTATTCTTTATTTAGGGGT
CTA------------------------------------------GTTGTCTTGGGTTTTAACTATGTTATGGTGGTATT
TTTTCATTCACATATTTTGATGGGGATGCTGCTGGAGAACTTTTTTTTTCTGAGAAGAGAGTAGAGTTGTTTGGTGCGGG
GTTATGGTGTCCATACACATTTCTATCTTGCTGTGATCGTGTGCGAGACTTTTGGGACGGCCCACGAAGCT----CCCGC
TCAGCTCAGCTCCCACCTCAACTTGCTTGCCTAGCTTTTTTTTTCTGTCGCTCCACTGCTATCGTACAGTAAGCTTGCTA
TCATTTTATATTTGAAAAACTCATTAAATTTAAAGATGTTCACGTATTTTTTTAAAATATCTTGGATTTTTAGAAATGTT
CCAAATTTGACAAACATGAATTGTAAAAAATGTTCAGATATTTATAATATTTTAGTAGATTTGGAAAATATGTTCACGAA
TGTGAAATAAAGGTCACATACTAAAAAATACAAGCTGCAGAAATGTTCATGAACATTTAAAATATGAATAAATTTACTTA
TTTCTTGGATTTATGAAAATGTTAACAATTTTTTAAAGTGTTCACATATTTTAATAAATTTTCATGAATTCAAATCTG-A
AAAACTAAAACAAGGAAAAAG---------AATAATAAAAGAATAAACAAACATGAGCCATCAACTAACAACACGTACGG
TTATGTGTGGGGCCAGCTATCCCACTACCACGGCCCCTTGAGTCACCGGGGGCTCCAAATCTAGAGAGCTTAATACGTTA
AGTAT-TTTTAAAAATGTTCCAAAACAAAAGATCGTTAACTGTAAACAAATTTTGGGATATTTATAAAATATTCATGGAT
TTAAAATAATATTCAGAAATTTTAAATAAAGTTTACAAATTTTAAAAATATCCACAAACTTTAATAATGTTCATGAACTT
TAGAAATATTCATGAA-TTAATTTATTATTGAATTTACAAAGATGTTCATAT-TTTTTAAAATTTCACAAAATAAAGGTC
AATAAAGATAAAATTTCAAAATAATTAAAAGAAAAAACAAACAGGAAGCAACAACGCACAATCTTATGCGCGGATCCAGT
GACCCCCACAAACAGTGAGGCACCTGGATGTTCAAAATCTATCTTAAGAGGT--------------ATCAACCATGTTTG
TAGCAAAGGGCCTTTCGGATTGTTCAAGAGCATGACCGGACCCAAGTACGACGGTGAGCACCTCCGCTCAGTCATCAAGG
AGATGCTCGGGGACACACGAGTCGATCAGACGCTTTCAAACATTGTGATCCCCACCTTCGACATAAAGCTCCTGCAGCCT
ACAATCTTCTCAACTTACGATGTATGTGATGAACAGAACCCAATGGGGTTACGTCCGTGTCTCACTCTA--TCTCTCTCT
GCTCGCATAGCTAATTACCTCATTAAAATG-TACAGGCCATGAAGGATGTCTCCAAGAATGCTCTTCTATCAGATGTCTG
CATCGGCACGTCTGCCGCACCGACATATCTCCCCGGCCACCATTTTGAAACGAAGGATGAGGACGGTAAGCCACGAGCCT
TCAACCTCATCGACGGAGGCGTCGCGTCAAACAATCCGGTGAGTTGTGCATGCATG--------------------TCAA
CTCG-AACGACAATGAATGTGATTGAGGCTGGATGAGACTTTGCTACG----TCTATTAATTAGGCTTATAAATACTCTG
CTCTGTCAAAACTCATTAATTAGTTCATCACTTATCTATAATTAGCACTATGTTTGTATATTGTCCGTCAACCCACCCTA
CTTGCATCCCAACT-------GCTAACCTATGTGGTATGATTATGTGTTTTGGTATCAAAGTATTGTTCTCCGTCTA--A
TATTTTAAAATGG-CATGGGTACAGACGTTGTTGGCAATGACCGACGTGAGCAAGCAAATCTTGATGGGAAACCCTGACT
TCTTTCCTATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGGGCACTGGAGCGGCTAAGATCGAGGAGAAG
TTTGACGTTGCCCAGTGCAGCAAGTGGGGCGTCCTCGGGTGGCTCTACAACAGGGGTGCCACTCCCATCATCGACAGCTT
CAGCCAGGCTAGCACCGACCTCGTCGACATCCATGCCTCTGTGCTTTTCCAGGCGCTTCACTGCGAGAAGCGCTACCTCC
GGATCCATGACGATGGGCTCAATGGTGAAACAGCCTCTGTCGACGTGTCCACGCCGGAGAACCTCAACAGGCTCGTTGAC
ATTGGCAAGTCGTTGCTGAAGAGGCAGGTGTGCAAGGTGAACGTCGAAACCGGCAAGAACGAGCCTGACTCGAAGAATAG
GGGCACCAACGAGGAGGAGCTGATCTATTTCGCACGAATGTTATCGGAAGAGCGCAAAGCCAGG----------------
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>SNPs
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---------------------------------------------------------------S-S-S-------S----
-------------------------------------S--------------------SS--------------------
----------------------SS-------------S---S-----------S------------SSSSS---------
----------------------------------------------------S---------------------------
-------------S-------S----------------------------------------------------------
---------------------S-----------------------------------S----------------------
-------------------------------------------------------------S------------------
------------------------------------S-------------------------------------------
S------------------S------------------------------------------------------------
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------------S-----------------------------S--------------------------------S----
----S----------S---------------------------------------------------------------S
----------------------------------S--------S-SS--SSSSS---SS-SS----------SS-SSS--
-S------------S-S---------------------------------------------------------------
------------------------------------------------------------------------------S-
---------------------------------------------------S----------------------------
----S------------------------S-S------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SS-
--------------------------------------------------------------------------------
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---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------------------------------------------S----------
----------------------S---------------------------------------------------------
---S-----------------------S-S-------S--S-------------S------------SSS---------S
---------------------------S----------S-----------------------------------SS-SS-
-----------S-----S-S------------S-----------------------------------S-----------
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--------------------------------------------------S------------S----------------
---------------SS-----------S---SSSSSSSSSSSSS----S------------------------------
--S-------SSSS-------------S---------------------S------------------------------
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_2984
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----GAGCCACAGAAGAGCAGCAT--------------------------------------------------------
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>reverse_5324
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-------------------------------------------GCATGGGCTCGTCGATTAGA-----------------
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>forward_5205
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-----------------------------------------------------------------ACTCCGTCGTGAAAG
AGCTC---------------------------------------------------------------------------
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>reverse_7553
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--------------------------------AGCGCATGGTAAACCGAGAA----------------------------
----
