>input_sequence_47198
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---------ATGCTCCACCAAACGCTCACCCCTTCTTCCCTTGCCTT------CTCCGCCTCCGCTTCCCCCGACCCTCT
CCCCTTCGCCTCAAACGCCAGCCCCGCCGCCGCCGCCGCCGCCGCCGCGACCACCCTTCGCCCCTCGGCCATGCCGTCCT
ACGCGCACCACCACAGCTCTCTGGTAAGGAGGGAGGGGGATTACGGGGGCGAGAGAGATAGAGATAGAGATAGATAGAGA
GAGAATCTTTTGTTGATTTTTCTTTTTTGTTGTAAGTTTTTTTCGGAGTGGAAGGAAGGAAACGAGCGTTCTTTCTCTTT
CTCTCAACTTGTGGTTCTTGGTTTC-------GGGAATTTATGATTTTCCTCTGTATG---------------TTGGGGC
GTGAAGGACGAGAGGATGGACGCCCTCAAGGGCAGTAGCCGCCAGGAGGAGACGCCCGACGAGGCCGCCGCCGCCGCCGA
GGCGCCGGCTGCCTGGGGCTTCGCCGAGCGGGACGGCTTCTCCGTCGAGGACCTGCTGGACCTTGAGGAGTTTTGCGAGC
CGGATAAGGACGGCGCCGACGAGCCCGAGGAGGCTCCGGCCGCCGACGTGAAGGAGGAGAAGTTGAACGACGGGCCCAAC
CAGCCCGTCGTGTCGTATGAGCTCGCCCCTCCGGCGCCGCCCGCGCCGGAGATTGTTGACCTGCCGGTGAGGTTTCAAGG
CAACTTTGACCGCTTCTCGCGGCTTTTTCCAGGCTTTTGTCGTACGTGGTGAAATTAATTATTTCTTCCTGCCTTGCTGT
GTGTTTCCGCAGGCGCATGACGTCGAGGAGGAGCTCGAGTGGGTGTCCCGTATCATGGACGACTCGCTCTCCGAGCTGCC
CCCGCAGCCGGCGCCGCCCGCGTCGATGATGGCCTCGTTGGCGCCACGCCCGCCGCAGCACCGGCTACCC------CAGC
GACACCCGCTACCGCAGCGGCACCCGCAGGATGGAGCGTACCGCGCTCTGCCGTCCATGTCCGACCCTATGCGGACTCCG
ACCATATGCGCGCTGTCCACGGAGGCGCTGGTTCCGGTCAAGGC---GAAGCGCAGCAAGCGCTCTCGGGCGTCG---GG
GTGGTCGCTCTCGGGCCCCGCGCCGGACTCCACCTCGTCCTCGTCGACCACCACCACCTCCTCCTGCTCCTCGTCGGCGT
CCTTCTCGCCCTACTTCCTGCTGGACACGCCGCACTTCGGCGCCTCGGAGCTCATGGAGGAGTACAACATCCTGCCGCCG
CCGGCCAAGAAGTCCAAGCACGGCAAGAGCAGCAAGCAGAAGGCCAAGAAGCGCGGGCGCAAGCCCAAGAACC-------
-------------------------TCCCCGCCCACCCGTCCAGCGCCACGGAG---GCCACCCAGAGCGACCGGCGCTG
CAGCCACTGCGGCGTGCAGAAGACCCCGCAGTGGCGCGCGGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCGTGCGGCG
TGCGCTACAAGTCCGGCCGGCTGCTCCCCGAGTACCGTCCGGCGTGCAGCCCGACGTACGTGAGCAGCGTCCACTCCAAC
TCCCACCGCAAGGTGCTCGAGATGAGGCGCAAGAAGGAGGACGGCCCGCTCACAGTCA---CCGCCACCGCGCCCGCCGT
GGCGTCGTTCTAG-------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G388300
AACCACTATTTTGCAAATCTTGGAGTAGCATAATTATTTGTCAAAAGTGGAAGCTGCCTGTATTTTGCGCCGGTATACAG
GAAATCGTCATCAGTTTAAAGTGAATGGACGATATACATGCTGCTCCACCATA--GTCACACC-TTTTTTAGTGCATGCA
TACACACAAGTGTGTACTCCTCCAAGA------TTTGTATGAATGCAGCATATCTTTGTACACATGGGTACGATACGATA
CAACATATTTACCCGCAACAGAAAAAAAAAGATACATCATATTTACAGTTGTAGGCCCGCGTGTCCACAGCACGAAAATG
AAAAAAAAAAGGAGAGAAGAAAAGATATGCAGGGAGCGTCAGCATATCCGGCGCGGATCGAAGGAATTCAAAGGGCGCCC
AA---------ATCCAATTCGAACCTTTCCGCACTCGCGTTTCAAAAATGACGCCATTTATGATTTTCGCTCGGACCGGA
GGGAAGGCATCGCGGCTGGCCCACCACGTGTCCCCCGGCGGCCACTAATCGCTCACCCACTTTACCTTAACCCACCCACA
GGCCCCGAAGAGAAGAACGGAACCACCCCGTCGTCTCGTCGCCCACGCAGCACGACAATCACGACGACGCGGGGCGGTGG
AAAACACAGAGACGACGAGACCGCTGCGCTGTTACCGGTAGCGTCACCCTTCTTTTCCGCCTCCGTTTCTTCCTTTTTTA
TAAAGAAGATTTTTATAAAGAGGATGAGTTCGAAGGCCAGGGTCTACACACACAGTAG-------------AAAAAAATG
AGTAGGCGAGTCGACCGATACCGAGAAGATAGTAGCGAGGTGGCGACATAAAAATAAAGATAGAAAC-------------
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--------------------------------------------------------------------------GGTTCG
GGGGGAGCACCAAAGGCCAAAGAAAAGGAGCGGACGAGACGAAAATTTTGGAGTGCGGGAGGAGGGAAGCCG--------
---GAGGTGGAGTGAAATGCGAGAAAGGGGAGGGGCGTGAGGCGACACTGCTCGCATTTGTTGTGCCCACGGACTTTGGC
AGCCATTCAATGCTCCACCAAACGCTCACCCCTTCTTCCCTTGCCTT------CTCCGCCTCCGCTTCCCCCGACCCTCT
CCCCTTCGCCTCAAACGCCAGCCCCGCCGCCGCCGCCGCCGCCGCCGCGACCACCCTTCGCCCCTCGGCCATGCCGTCCT
ACGCGCACCACCACAGCTCTCTGGTAAGGAGGGAGGGGGATTACGGGGGCGAGAGAGATAGAGATAGAGATAGATAGAGA
GAGAATCTTTTGTTGATTTTTCTTTTTTGTTGTAAGTTTTTTTCGGAGTGGAAGGAAGGAAACGAGCGTTCTTTCTCTTT
CTCTCAACTTGTGGTTCTTGGTTTC-------GGGAATTTATGATTTTCCTCTGTATG---------------TTGGGGC
GTGAAGGACGAGAGGATGGACGCCCTCAAGGGCAGTAGCCGCCAGGAGGAGACGCCCGACGAGGCCGCCGCCGCCGCCGA
GGCGCCGGCTGCCTGGGGCTTCGCCGAGCGGGACGGCTTCTCCGTCGAGGACCTGCTGGACCTTGAGGAGTTTTGCGAGC
CGGATAAGGACGGCGCCGACGAGCCCGAGGAGGCTCCGGCCGCCGACGTGAAGGAGGAGAAGTTGAACGACGGGCCCAAC
CAGCCCGTCGTGTCGTATGAGCTCGCCCCTCCGGCGCCGCCCGCGCCGGAGATTGTTGACCTGCCGGTGAGGTTTCAAGG
CAACTTTGACCGCTTCTCGCGGCTTTTTCCAGGCTTTTGTCGTACGTGGTGAAATTAATTATTTCTTCCTGCCTTGCTGT
GTGTTTCCGCAGGCGCATGACGTCGAGGAGGAGCTCGAGTGGGTGTCCCGTATCATGGACGACTCGCTCTCCGAGCTGCC
CCCGCAGCCGGCGCCGCCCGCGTCGATGATGGCCTCGTTGGCGCCACGCCCGCCGCAGCACCGGCTACCC------CAGC
GACACCCGCTACCGCAGCGGCACCCGCAGGATGGAGCGTACCGCGCTCTGCCGTCCATGTCCGACCCTATGCGGACTCCG
ACCATATGCGCGCTGTCCACGGAGGCGCTGGTTCCGGTCAAGGC---GAAGCGCAGCAAGCGCTCTCGGGCGTCG---GG
GTGGTCGCTCTCGGGCCCCGCGCCGGACTCCACCTCGTCCTCGTCGACCACCACCACCTCCTCCTGCTCCTCGTCGGCGT
CCTTCTCGCCCTACTTCCTGCTGGACACGCCGCACTTCGGCGCCTCGGAGCTCATGGAGGAGTACAACATCCTGCCGCCG
CCGGCCAAGAAGTCCAAGCACGGCAAGAGCAGCAAGCAGAAGGCCAAGAAGCGCGGGCGCAAGCCCAAGAACC-------
-------------------------TCCCCGCCCACCCGTCCAGCGCCACGGAG---GCCACCCAGAGCGACCGGCGCTG
CAGCCACTGCGGCGTGCAGAAGACCCCGCAGTGGCGCGCGGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCGTGCGGCG
TGCGCTACAAGTCCGGCCGGCTGCTCCCCGAGTACCGTCCGGCGTGCAGCCCGACGTACGTGAGCAGCGTCCACTCCAAC
TCCCACCGCAAGGTGCTCGAGATGAGGCGCAAGAAGGAGGACGGCCCGCTCACAGTCA---CCGCCACCGCGCCCGCCGT
GGCGTCGTTCTAGCTCGCTCGCTCGCTGGCTGGCTGGCCACTCCGTCCGCGGTGGCTGTACATTTTCCCGCCCGTATCAG
TCTTTGTACTACCGTACTCGAACCC-TTTTTCTTCCATTTCTCTGCTAGTATCATCATCATCATCATCCGAGTAGTACCG
TTTGGAGATTAATTAGAGTCCAGCAGGTTTAGGTCATGTTAGGTTTTAGGAATTCGGCCCCTCCAACTCCATCACCTTCA
TTAGCTTGTTAGGGTACTAAGTACTGCTACAGCAGCAGCAGTGCAGCACTAGCGCAGAACTTTATTTCCAGCTTTGTCCC
AAGGAGTTTTTCTATGAGCTAGCGTGTGTTTGCTAGGGTAGTGTAAATCAATGGCGGTGCTTAGCTTTTACCATCATCAG
GGTTGAAGAAACCAAGAACCT---TTCCCTT----TGGGGTGAAGGAAAAGAGG-AGAGACGAGAAGAGAGCAACGCACC
GGCGAACCAAGCGGGAGCCCGATGCGTGCACCCTTGGATACATCACATGGTGTTGTCACATGTAACAGCATGATGCATGC
TTAGTTTTAGGAGCA-----------------------GAGCAGACAGTTGAGGGCTTGGGACAGCGAGAGGTAGAAGTA
GATGGATGCTGCAAGCAACCATGCTCCGCTGTCTGTTTCGTGTAGATGGAGTA----------------------TTGTT
CATGGATGGCCCTGCTAATTTTCTCTCTCAGTCCAATGAATC--ATGCAGCGGTGTGGCCCTTCGCGGTGTAGTCGTGGC
AATTTTGACAATTTTGACCTATGGACGAAATCAATTCACGGAATGAACTGGCCGTGAAACTATTTCACAGCTTTAACCTT
TTTGTGTAGCGCCCGCCAGGACGGCGCCACACTCTACGGTGCAGCGCCTAGCCCGGGGGCGTTGCACACCAGTCCACCGT
GGCAGCCCCTGGGCCCGCAACCAGCAGTGCAACGCCTCCGAGCTAGGCGCCACACTTGTAAAGTGCAACGCCTCCGAGGT
AGGCGTCACACTTCTTAAGTGCAGCGCCT
>chr2D_1
AACCACTATTTTGCAAATCTGGGAGTACCATAATTATTTGTCAAAAGTGGAAGCTGCCTATATTCTGGGCCGGTATACAG
AAAATCGTCATCAGTCTAAAGTGAATGAAGGATATACATATTGCTCTACCATACGGTCACACCTTTTTTTAGTGCATGCA
CATACACAAGTGTGTAGTGTATACTCCTAAAAGTTTGTATGAATGCAGCATAT---------------------------
------------------------------------------TTACAGCTATGGACCCGCGTGTCCACAGCACGAAAATG
AAAAAAAAAAGGAGAGAAGAAAAGATATGCACGGAACGTCATCATATCCGGCGCGGATCGAAGGAATTCAAAGGGCGCCC
AAAC-GCCCAAATCCAATTCGAACCTTTCCGCACTCGGGTTTAAAAAATGACGCCATTTATGATTTCC-CTCGGACCGGA
GGGAAGGCATCGCGGCTGGCCCACCACGTGTCCCCCGGCCACGACTAATCGCTCACCCACTTTACCTTAACCCACCCACT
GACCCCGAAGAGAAGAAC-----CACCCCGTCGTCTCGTCGCCCACGCAGCACGACAATCACGACGACGCGGGGCGGTGG
AAAACACAGAGACGACGAGACCGCCGCGCTGTTACTTGTAGCGTCACCCTTCTTTTCCGCTTCCGTTTCTTTCTTTTCTT
TTTTACATAAAGA---AAAGAAGATGAGTTCGAAGGCCAGTGTCGATA--------------------------------
--------------------CCGAGAAGATA---GTGAGGTGGCGACATAAAAATAAAGATGGAAAC-------------
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--------------------------------------------------------------------------GGTTCG
GGGGGAGCACCAAAGGCCAAGGAAAAAGAGCGGACGAGACGAAAAATTTGGAGTGCGGGAGGAGGGAAGCCGGCG-GGCG
CAGGAGGTGGAGTGAAATGCGAGAAAGGGGAGGGGCGTGAGGCAACGCTGCTCGCATTTGTTGTGCCCACGGACTTTGGC
AGCCATTCAATGCTCCACCAAACGCTCATCCCTTCTTCCCTTGCCTTCTCCGCCTCCGCTTCCCCTTCCCCCGACCCTCT
CCCCTTCGCCTCGAACGCC------GCCGCCGCCG---CCGCCGCCGCGACCCCCCTTCGCTCCTCAGCCATGCCGTCCT
ACGCGCACCACCACAGCTCTCTGGTAAGGAGGGAGGGAGATTACCGGGGCGAGAGAGATAGAG--------AGATAGAGA
GAGAATCTTTTGTTGATATTTCTTTTTTGTTATAAGTTTTTTTGGGAGAGGAAGGAAGAAAAGGAGCGTTCTTTCTCTTT
CTCTGAAGTTGTGGTTCTTGGTTCCTGGAATTGGGAATTTATGATTTTCATGTGTGTATGTGTGCGCCTACTTTTGGGCC
GTGAAGGACGAGAGGATGGACGCCCTCAAGGGCAGTAGCCGCGAGGAGGAGACGCCCGACGAGGCCGCCGCCG------A
GGCGCCGGCGGCCTGGGGCTTCGCCGAGAGGGACGGCTTCTCCGTCGAGGACCTGCTGGACCTCGAGGAGTTCTGCGAGC
CGGATAGGGACGGCGCCGACGAGCCCGAGGAGGCTCCGGCCGCCGCCGTGAAAGAAGAGAAGTTGAACGACGGGCCCAAC
CAGTCCGTCGTGTCGTATGAGCTCGCCCCTCCGGCGCCGCCAGCGCCGGAGATTGTTGACCTGCCGGTGAGGTTTCAAGG
CAACTTTGACCGCTTCTCGCGGCTTTTTCCAGGCTTTTGTCGTACGTGGTG-AATTAATTATTTCTTCCTGCCTTGCTGT
GTGTTTCCGCAGGCGCATGACGTCGAGGAGGAGCTCGAGTGGGTGTCCCGTATCATGGACGACTCGCTCTCCGAGCTCCC
CCCGCAGCCGGCGCCGCCCGCGTCGATGATGGCGTCGTTGGCGCCACGCCCGCCGCAGCACCGGCTACCC------CAGC
------------------GGCACCCGCAGGATGGAGCGTACCGTGCTCTGCCGTCTATGTCCGACCCTATGCGGACTCCG
ACCATATGCGCGCTGTCCACGGAGGCGCTGGTCCCGGTCAAGGC---GAAGCGCAGCAAGCGCTCTAGGGCGTCG---GG
GTGGTCGCTCTCGGGCCCCGCGCCGGACTCCACGTCGTCCTCGTCGACCACCACCACCTCCTCGTGCTCCTCGTCGGCCT
CCTTCTCGCCCTACTTCCTGCTGGACACGCCGCACTTCGGCGCCTCGGAGCTCATGGAGGAGTACAACATCCTGCCGCCG
CCGCCCAAGAAGTCCAAGCACGGCAAGAGCAGCAAGCAGAAGGCCAAGAAGCGCGGCCGCAAGCCCAAGAACC-------
-------------------------TCCCCGCA---CCCTCCAGCGCCATGGAGGCCGCCACCCAGAGCGACCGGCGCTG
CAGCCACTGCGGCGTGCAGAAGACCCCGCAGTGGCGCGCGGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCGTGCGGCG
TGCGCTACAAGTCCGGCCGGCTCCTCCCCGAGTACCGGCCGGCGTGCAGCCCGACGTACGTGAGCAGCGTCCACTCCAAC
TCCCACCGCAAGGTGCTCGAGATGAGGCGCAAGAAGGAGGACGGCCCCCTCACAGTCA---CCGCCACCGCGCCCGCCGT
GGCGTCGTTCTAGCTCGT----TCGCTGGCTGGCTGGCCACTCCGTCCGCGGTGGCTGTACATTTTCCCGCCCGTATCAG
TCTTTGTACTACCGTACTCGAACC-TTTTTTCTTCCATTTCTCTGCTAGTATCATCATCATCATC---CGAGTAGTTCCG
TTTGGAGATTAATTAGAGTCCAGCAGGTTTAGGTCATGTTAGGTTTTAGGAATTCGGCTCCTCCAACTCCACCACCTTCA
TTAGCTTGTTAGGGTACTAAGTACTGCTACAGCAGCAGCAGTGCAGCACTAGCTCAGAACTTTATTTCCAGCTTTGTCCC
AAGGAGTTTTTCTATGAGCTAGCATGTGTTTGCTAGTGTAGTGTAAATCAATGGCGGTGCTTAGTTTTTACCATCATCAG
GGTTGAAGAAACCCAGAACCAACCTTCCCTTTGGGTGGGGTGAAGGAAAAGAGGGAGAAACGAGAAGAGAGCAACGCATC
GGCGAACCAACCGGGTGCGTGATGCGTGCATCCTCGGATACATCACATGGTGTTGTCACATGTAAC--------------
-----------AGCA-----------------------GAGCAGACAGTTGAGGGCTCGGGACAGCGAGAGGTAGAGGTA
GATGGATGCTGCAAGCAACCACGCTGCGCTGTCTGTTTCGTGCAAGAGCAGGAATGGAGTGGAGTTGGGAAGTTCTTGTT
CATGGATGGCCCTGCTAATTTTCTCAATCA--CCAATGAATCATATGCAGCGGTGTGGCTCTTTGCAGTGTGTAGTCGT-
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>chr2B_3
--CCACTATTTTGCAAATCTTGGAGTACCATAATTATTTTTCAAAAGTGGAAGCACCCTGTATTCTGCGCCGGTATACAG
AAAATCGTCATCGGTTTAAAGAGAATGGACGATATACATACTGCTCTACCATACAGTCACACC-TTTTTTAGTGCATGCA
GATACACAAGTGTGTACTCCTACAAGA------TTTGCATGAATGCATCATATTTATGTACACATAGTACG--TACGATA
CAACATATGTATCGGCAAAAGATAAAA---GATGCAGCATATTTACAGTTATAAACCCGCGTGTCCACAGCACGAAAATG
AAAAAAAAAGGGAGAGAAGAAAAGATATGCACGGAACGTCATCATATCCGGCGCGGATCGAAGGAATTCAAAGGGCACCC
ATCCTGCGCAAATCCAATTCGAACCTTTCCGCACTCGCGTTTCAAAAATGACGCCATTTATGATTTCC-CTCGGACCGGA
GGGAAGGCATCGCGCCTGGCCCACCACGTGTCCCCCGGCCACCACTAATCGCTCACCCACTTTACCTTAACCCAC----T
GACCCCGAAGAGAAGAAC-----CACCCCGTCGTCTCGTCGCCCACGCAGCACGACAATCACGACGACGCGGGGCGGTGG
AAAACACAGAGACGACGAGACCGCTGCGCTGTTACTGGTAGCGTCACCCTTCTTTTCCGGCTCCGTTTCTTCCTTTTTTA
CC------AAAAA---AAAGAAGAAGAGTTCGAAGGCCAGTGTCGATAATACATACAAATACAAAAGTAAAAAAGAAATG
AGTAGGCGAGTCGACCGATACCAAGAAGATA---GCGACGTGGCGACATAAAA-TAAAGATAGAAACGGTTCGGGGCATA
GTAGCCGGAAACGGGAACGGTAGGCCGTCCCTCGATTCCGATTCATCGACCCAGAATCGGATTCGGGAACAAGGTCGGAT
TCAGTACGATTCGATGAAGATTGGGCGTCCCCGCAGCCTGCTCCTCGATTCAGGTTCGAGGATCCAACAGCCAAAACGCG
AGGCATAATTTACTCACGCCGTCGTTTCTTTTCTCAAGGACTCCTCGTTCTTCCTCCAGTCCATTAATTGCAAGAGATCC
ATTAACAGCAAGGAATGCTGATCGTCAGGGAGTCTTCATTTTTCAGGAACTGCGTTCCTCGACCCATGGTACCGTACCGG
GTTCATCGTACCAAAATGGATTGGATCGCGTCCCCGCTATAAAAAAATCGTTCGAGAGATGTATACCTTCGTTGTACCCT
ATTTTTTTCAGCCACTGACCCTCGTCCCTCGTTCCCGTTCCCTGTTCCCACCGTACCATAAACATGGCAACTATGGTTCG
GGGGGAGCACCAAAGGCCAAAGGAAAAGAGCG-----GACGAAAAATTTGGAGTGCGGGAGGAGGGAAGCCGGCGCGGCG
CAGGAGGTGGAGTGAAATGCGAGAAAGGGGAGGGGCGTGAGGCGACACTGCTTGCATTTGTTGTGCCCACGGACTTTGGC
AGCCATTCAATGCTCCACCAAACGCTCATCCCTTCTTGCCTTGCCTT------CTCCGCCTCCGCTTCCCCCGACCCTCT
CCCCTTCGCCTCAAACGCC------ACCGCCGCCGCCCCCGCCGCCGCGACCCACCTTCGCTCCTCAGCCATGCCGTCCT
ACGCGCACCACCACAGCTCTCTGGTAAGGAGGGAGGGAGATTACCGGGGCGAAAGAGATAGAG--------AGAA--AGA
GAGAATCTTTTGTTGATTTTTA-------TTATAAGTTTTCTTCGGACAAGACGGAAGAAAACGAGCGCTCTTTCTCTTT
CTCTCGACTTGTGGTTCTTGGTTCCTGGAATTGGGAATTTATGATTTTCCTGTGTGTATGTGTGCGCCTTCTTTTGGGCC
GTGAAGAACGAGAGGATGGACGCCCTAAAGGGCAGTAGCCGCCAGGAGGAGACGCCCGACGAGGCCGCCGCCG------A
GGCGCCGGCGGCCTGGGGCTTCGCCGAGAGGGACGGCTTCTCCGTCGAGGACCTGCTGGACCTCGAGGAGTTTTGCGAGC
CGGATAAGGACGGCGCCGACGAGCCCCAGGAGGCGCCGGCCGCCGACGTGAAGGAGGAGAAGTTGAACGACGGGCCCCAG
CAGCCCGTCGTGTCGTATGAGCTCGCCCCTCCGGCGCCGCCCGCGCCGGAGATTGTTGACCTGCCGGTGAGGTTTCAAAG
CAACTTTGACCGCTTCTCGCGGCTTTTTCCAGGCTTTTGTCGTACGTGGTG-AATTAATTATTTCTTGCTGCCTTGCTGT
GTATTTCCGCAGGCGCATGACGTCGAGGAGGAGCTCGAGTGGGTGTCCCGTATCATGGACGACTCGCTCTCCGAGCTGCC
CCCGCAGCCGGCGCCGCCCGCGTCGATGATGGCGTCGTTGGCGGCACGCCCGCCGCAGCGCCGGCTGCCGCTGCCGCAGC
------------------GGCACCCACAGGACGGAGCGTACCGTGCTCTGCCGTCCATGTCCGACCCTATGCGGACTCCG
ACCATATGCGCGCTGTCGACGGAGGCGCTTGTTCCCATCAAGGC---GAAGCGCAGCAAGCGCTCTAGGGCGTCG---GG
GTGGTCGCTCTCTGGGCCCACGCCGGACTCCACTTCGTCCTCGTCGACCACCACCACCTCCTCGTGCTCCTCGTCGGCGT
CCTTCTCGCCCTACTTCCTGATGGACTCGACCCACTTCGGCGCCTCGGAGCTCATGGAGGAGTACAACATCCTCCCGCCG
CCGCCCAAGAAGTCCAAGCACGGTAAGAGCAGCAAGCAAAAGGCCAAGAAGCGTGGCCGCAAGCCCAAGAACC-------
-------------------------TCCCTGCCCACCCGTCCAGCGCCATGGAGGCCGCCACCCAGAGCGACCGGCGCTG
CAGCCACTGCGGCGTGCAGAAGACCCCGCAGTGGCGCGCGGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCGTGCGGCG
TCCGCTACAAGTCCGGCCGGCTCCTCCCCGAGTACCGCCCGGCGTGCAGCCCGACGTACGTGAGCAGCGTCCACTCCAAC
TCCCACCGCAAGGTGCTCGAGATGAGGCGCAAGAAGGAGGACGGCCCTCTCACAGTCA---CCGCCACCGCGCCCGCCGT
GGCGTCGTTCTAGCTCGCTC----GCTGGCTAGCTGGCCACTCCGTCCGCGGTGGCTGTACATTTTCCCGCCCGTATCAG
TCTTTGTACTAGCGTACTCGAACCTTTTTTTCTTCCATTTCTCTGCTAGTATCATCATCATC------CGAGTAGTTCCG
TTTGGAGATTAATTAGAGTCCAGCAGGTTTAGGTCATGTTAGGTTTTAGGAATTCGGCTCCTCCAACT---CCACCTTCA
TTAGTCTGTTAGGGCACTAAGTACTGCTACAGCAGCAGCAGTGCAGCACTAGCTCAGAACTTTATTTCCAGCTTTGTCCG
AAGGAGTTTTTCTATGAGCTAGCATGTGTTTGCTAGTGTAGTGTAAATCAATGGCGGTGCTTAGTTTTTACTATCATCAT
GGTTGAAGAAACCTAGAACCAACCTTCCCTT----TGGGGTGAAGGAAAAGAGG-AGAGACGGGTAGAGAGCAACGTGCC
GGCGAACCAACCGGGTGCCTGATGCGTGCACCCTTGGATACATCACATGGTGTTGTCACATGTAAC--------------
-----------AGCATGATGCATGCTTAGTTAGGAGCAGAGCAGACGGTTGAGGGCTCAGGACAGCGAGAGGTAGAAGTA
GATGGGTGCTGCAAGCAACCACGCTCCGCTGTCTGTTTCGTGTAAGAGCAGGAATGGAGCTGA-----GAAGTTCTTGTT
CATGGATGGCCCTGTTAATTTTCTCAATCA--CCAATGAATC--ATGCAGCGGTGTGGCCCTTCGCAGTGTGTAGTCGT-
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>chr6A_1960
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------------------------------------------GCGCTGTGCCGGCCGTG---GACCCTATGCGGACCCCG
ACCATATGCGCGCTTTCCACGGAAGCGCTGGTGCCGGTGAGGTCCAAGAAGCGCAGCAAGCGCTCGCGGGGCACCACCGT
GTGGTCGCTCTCCGGCGCGTCCATATCCGAC---TCGGCGTCGTCGTCCGCCACCAGCTCCTCCTGCTCCTCGTCGGCCT
CCCTGTCGTCCTTCTTCCTGATGGACTCCCCAACCTTCAACCTCCTCGACGAACCGCCACGCACCAAGAGCAAGAA----
-----CAAGAAGTCC------------------AAGCACAAGCTCAAGAAGCGCGGGCGCAAGCCAAAGAGCCATCTCCC
GCCGCAGCTGTCTGGCGGCGCCGCCTCCCCGCCCG--------------------------CCCAGGGCGACCGGCGGTG
CAGCCACTGCGGCGTCCAGAAGACGCCCCAGTGGCGTGCGGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCCTGCGGCG
TCCGCTTCAAGTCGGGGCGGCTCCTGCCGGAGTACCGGCCGGCGTGCAGCCCCACGTTCGTGGGCAACCTGCACTCCAAC
TCCCACCGCAAGGTGCTGGAGATGCGCCGCAAGAAGGACCCCGTCCCCGTCGCCATCGAGGCCGCCGCCGCGCCGGCCGT
CGCCTCGTTCTAGCCGC---------------------------------------------------------------
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>chr6D_1980
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--------------------------------------------------------------GACCCTATGCGGACCCCG
ACCATATGCGCGCTTTCCACGGAAGCGTTGGTGCCGGTGAGGTCGAAGAAGCGCAGCAAGCGCTCGCGCGGCACCACCGT
GTGGTCGCTCTCCGGTGCGTCCATATCCGAC---TCGGCGTCGTCGTCCGCCACCAGCTCCTCCTGCTCCTCGTCGGCCT
CCCTGTCGTCCTTCTTCCTAATGGACTCCCCCACCTTCAACCTCCTCGACGAACCTCCACGCCCCAAGAACAAGAG----
-----CAAGAAGTCC------------------AAGCACAAGGCCAAGAAGCGCGGGCGCAAGCCAAAGAGCCATCTCCC
GCCGCAGCTGTCGGGCGGCGCCGCCTCCCCGCCGG--------------------------CCCAGGGCGACCGGCGGTG
CAGCCACTGCGGCGTCCAGAAGACGCCCCAGTGGCGCGCTGGGCCGGAGGGCGCCAAGACGCTGTGCAACGCCTGCGGCG
TCCGCTTCAAGTCGGGGCGGCTCCTCCCGGAGTACCGGCCGGCGTGCAGCCCCACGTTCGTGGGCAACCTGCACTCCAAC
TCCCACCGCAAGGTGCTGGAGATGCGCCGCAAGAAGGACCCCGTCCCCGTCGTCATCGAGGCCGCCACCGCGCCGGCCGT
GGCCTCGTTCTAGCCGC---------------------------------------------------------------
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>chr6B_1980
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--------------------------------------------------------------GACCCTATGCGGACCCCG
ACCATATGCGCGCTTTCCACGGAAGCGCTGGTGCCGGTGAGGTCCAAGAAGCGCAGCAAGCGCTCGCGCGGCACCACCGT
ATGGTCGCTCTCCGGCGCGTCCATATCCGAC---TCGGCGTCGTCGTCCGCCACCAGCTCCTCCTGCTCCTCGTCGGCCT
CCCTGTCGTCCTTCTTCCTGATGGACTCCCCCACCTTCAACCTCCTGGACGAACCGCCACGCACCAAGAGCAAGAG----
-----CAAGAAGTCG------------------AAGCACAAGGCCAAGAAGCGCGGGCGCAAGCCAAAGAGCCACCTCCC
GCCGCAGCTGTCGGGCGGCGCCGCCTCCCCGCCCGGG--------------------------CAGGGCGACCGGCGCTG
CAGCCACTGCGGCGTGCAGAAGACGCCCCAGTGGCGCGCGGGGCCAGAGGGCGCCAAGACGCTGTGCAACGCCTGCGGCG
TCCGCTTCAAGTCGGGGCGGCTCCTCCCGGAGTACCGGCCGGCGTGCAGCCCCACGTTCGTGGGCAACCTGCACTCCAAC
TCCCACCGCAAGGTGCTGGAGATGCGCCGCAAGAAGGACCCCGTCCCCGTCGTCATCGAGGCCGCAGCCGCGCCGGCCGT
GGCCTCGTTCTAGCCGC---------------------------------------------------------------
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>SNPs
---------------------------S------------------------------------S---------------
S--------------------------------------S------S---------------------------------
S-S------------------S-------------------------------S-S---------S-SSSSSS-------
--------S--S-S----S---S----SSS---S--S-------------S---S-------------------------
-------------------------------S---S-----S--------------------------------------
------------------------------------------------------------------S-S-----------
---------------------------------------SS--------------------------------------S
-S----------------SSSSS---------------------------------------------------------
-----------------------------------S--------------------------------------------
-SSSSS-S-SSSSSSS-----S------------------S---S-S-SSSSSSSS-S----------------S-----
-------------------------------SSS----------------------------------------------
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--------------------------S------------------S----------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------------------SSSSSS------------S--------------S--------S----S-------------
-------------------------------------S------S------------------SSSSSSSS---------
-------------------------------S----------------S---------S---------------------
-----------------------S---------------------------S---S-S--------------------S-
-------------------------------------------------------------------------SSSSSS-
---------S------------------S----------------------------------S----------------
--------------------------------------------------------------------------------
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---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
----------------------S--------------S------------------------------------------
-----------------------------------------------S--------------------------------
--------------------SS----------------------------------------------------------
------------------------S----------------------------------------SSS--------S---
----------------------------------------------------------S------------S--------
-----------------------------------------------------S--------------------------
-----------------------S------------S---------------------------S---------------
-------------S------S-----------------------------------------------------------
----------S----S---S----------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSS----------------------------------------------S----------------------
---------------------S----------------------SSS-S--S----------------------------
-------------------------SS---SS----------------------------------S----SSSSSS-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_771
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-------------------------------GAAGGCCAGGGTCTACACAC-----------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_2804
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GCCAAGAAGTCCAAGCACG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_775
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCCAGGGTCTACACACACAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_3347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TCCGAGTAGTACCG
TTTGGAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
