>input_sequence_47196
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--------------------------------------------ATGGCCACCATCACAAATAG--TGAACTAGAGCCCT
ATGCAAGGCAACGAAACCTCAAGTGCGATCGAAGGTCACTGAACTTTGAGACATCACCAACGTCACGA------------
-GCACTCATGAGAGGAGGTCGACCAACAACACCAGGATGACCAAGGCACCCTAGACGCCTCAAGAAGTGCCAGCAAACCA
ATTGGGACCCCTAACGACCGACCGCAAATCAACGTCTCGAAGACGACA--CCCCAAGGGGAAAATGACATTGATGGCATC
TTT-TCGTTGGATCCAATATGGATCTAAGGCTTTTGCCTGGAGCATACCATGGAACAAAGATGGAAGCTTCTCGATGACA
CCTTCGAGGAAAAAATGTGGCCCATAGGTGTCGCCGTCATTGTTGCCGACAAGGTCGACACAAGGCTTTCGTCTGAAGCA
TCACATTCCCGCCTCACCGTATCATGCTCACCGTCGAGTCTGGCAAGCACATGAGCACGAGACCTTCCCCACCTCTTGCT
GTTTGGTGGAGAGTATCCTCGCCGGATCGAACAAGAGGGCCACCTTTGATGCAAGCAAACATGGCTTTGATTCGCATTCA
GGTTTAAAGAGAATCCGCTCTATATAACAAGAAATTTTCATTCAAGTTTAAAGAGAAACTACTA--------TTATATAA
CAAGAAATGAATTTAGAACCACTGAACCCCTTGGAAGTGGCTTGCAGAAACCAAATGGATTCCTTCATCAGTATATA--A
AATAAAACTAAGATGCACTTAAGTACCATAATTGAACTATACTGTTTGACATAGAGAATAATCATTATTGCAGAAGAAAC
AAAAAAGAGCCAATCGTCTTGTGAAAGAAGTTTGCCTAGATTGGCTGTATGCTTTCATGTTGCTAGCTTGCTACTCTTAT
CTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TGGAAACAGAAGTAGCAAACTTCCTTTTATTCTTTGCTTCAACAGATACCA
TCACTTAGCCCCACTTCAGTCAGTATGTCCTTAGCTTACATAGCAGCTTTATGTTTTTTCCGGCAAGTTTGATCTATTTC
GTTCCTTCTATTAGCTAGATGTTCTTCCAGGACAGTACAATGGATATGGGTTATTAACATCAAAGCTCTCTGTTTCCAGG
GCACCATCTCTAAAGAGCCTTCGCTTCATATCTTCTAAGTACATCACTAATGAAGGGTTGTTGGAGGCACTTAATAAGTT
TCCTGTGCTTGAGGAGCTTGAGCTTTCACTTTGCAAACATGTTTTCGGGAAGGTATACGAGGGTATTAGCATAGCCTGTC
CACGCCTCAAATGTTTGAAGGTCAACTATCCTTGCTTCTATAACATCGAAGATATCGAGTATAACAAGGATGAGGAAGCT
CTGGGGATTGCAACAATGTTTGTGCTACCCTCCCTTCAACTGTTTGGCAGCGAACTCACCAACGTAGGATTGGCAACAAT
CCTTGATAACTGCCCTCACCTTGAGTATTTGGACATTCGCCATTGTTTCAATATCCACATGGACATCACCCTGCGTGCAA
AGTGTGCTAGAGTAAAGACGATGAGGCTTCCTCATGACTCAACTGATGACTATGAGTTCCAGATTGAAAACCTAGTTCGA
ACACGTGCAAGGAAACCTAGGTGA--------------------------------------------------------
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>chr1A_1_TraesCS1A01G128000
GAGGATTCCTCCCAGCCACCCGCACCTCTATCCGTTACAACCGAGCCACGGCCGCAGCCTTCCAAATCCTAGCCAAACTC
CACAAGTAACCAGGATTGGTTTATATACTACTACACCCGCTTAATGGGCCCGGTTTGGGCTAGCAAGCCACTGGGGTGGT
CTCTTGGCCCGTGTAGACTTGGGCCTCTGGTTCATGATGCGCTCTGGATCGCTGTTGCCGGCAACCACTGGATCAACTAT
AGGGCTTGGCGCTCTTTCTTCAGGGACAGCGGCTACAGGGCTGCTAACATCTGGTGCCGCATTGACATGTGCATCCACAA
AGATCATAACTACCGGATTGACGAAGGCATGGCGAAGGAAGCCGTCC-GCGGGGGTCGAGACAGTGTGAGTCCTTCTGTG
GCGAAGATGCCACCGACCACTTCCTCCTATTCCTCGCCGAGCAGTGAGATTTGCGTTCTTTATTTCTCCCCTCCCCTCAC
GAGTAAAGATTGGGCTTCATGTCTGGCTTCGCTTTTCCTTATTCCGCAATTAGGGTATAAATGTCTTACATTTCAGGACG
AAGGGAGTAGATCATTAGCGCAGCTTATGATT---TAGTCGCGTGCATTTTTCTTAAGCTGCTACGGCGGGCAAAGGCAC
ACGACGGCTACAGGACGTAGCACATGACACACAAGAAGGAACATGGAAGCAAAGGAAGAGAACTGAAATGAGAACTAGAA
ACAAGCTACAACAAACAGCCACCACCAAGAGCTTAGCACCCATCACCATTAGATCAGACCGAGAAGAAGCAGAAACTAGC
ATAGTTGTATCAGTGGAAAGGAAATCTGACACCGAGAAGACGTAGAGAAGAAGTCATTGTCTAGCCCTGGGATCACTCTT
CACCTTCAAGACATGGGAGAGTGTCACATCCATTGTCGAAGGGCTTCCCACCACCTAGCCACGTTGTGACAAAGAGAGGC
AATGATCCGCCGAGACAGCCCCTGCACCTCCTCTTGGCCACCCCATGGCCACCATCACAAATAG--TGAACTAGAGCCCT
ATGCAAGGCAACGAAACCTCAAGTGCGATCGAAGGTCACTGAACTTTGAGACATCACCAACGTCACGA------------
-GCACTCATGAGAGGAGGTCGACCAACAACACCAGGATGACCAAGGCACCCTAGACGCCTCAAGAAGTGCCAGCAAACCA
ATTGGGACCCCTAACGACCGACCGCAAATCAACGTCTCGAAGACGACA--CCCCAAGGGGAAAATGACATTGATGGCATC
TTT-TCGTTGGATCCAATATGGATCTAAGGCTTTTGCCTGGAGCATACCATGGAACAAAGATGGAAGCTTCTCGATGACA
CCTTCGAGGAAAAAATGTGGCCCATAGGTGTCGCCGTCATTGTTGCCGACAAGGTCGACACAAGGCTTTCGTCTGAAGCA
TCACATTCCCGCCTCACCGTATCATGCTCACCGTCGAGTCTGGCAAGCACATGAGCACGAGACCTTCCCCACCTCTTGCT
GTTTGGTGGAGAGTATCCTCGCCGGATCGAACAAGAGGGCCACCTTTGATGCAAGCAAACATGGCTTTGATTCGCATTCA
GGTTTAAAGAGAATCCGCTCTATATAACAAGAAATTTTCATTCAAGTTTAAAGAGAAACTACTA--------TTATATAA
CAAGAAATGAATTTAGAACCACTGAACCCCTTGGAAGTGGCTTGCAGAAACCAAATGGATTCCTTCATCAGTATATA--A
AATAAAACTAAGATGCACTTAAGTACCATAATTGAACTATACTGTTTGACATAGAGAATAATCATTATTGCAGAAGAAAC
AAAAAAGAGCCAATCGTCTTGTGAAAGAAGTTTGCCTAGATTGGCTGTATGCTTTCATGTTGCTAGCTTGCTACTCTTAT
CTC-----------------------------------------------------------------------------
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-----------------------------TGGAAACAGAAGTAGCAAACTTCCTTTTATTCTTTGCTTCAACAGATACCA
TCACTTAGCCCCACTTCAGTCAGTATGTCCTTAGCTTACATAGCAGCTTTATGTTTTTTCCGGCAAGTTTGATCTATTTC
GTTCCTTCTATTAGCTAGATGTTCTTCCAGGACAGTACAATGGATATGGGTTATTAACATCAAAGCTCTCTGTTTCCAGG
GCACCATCTCTAAAGAGCCTTCGCTTCATATCTTCTAAGTACATCACTAATGAAGGGTTGTTGGAGGCACTTAATAAGTT
TCCTGTGCTTGAGGAGCTTGAGCTTTCACTTTGCAAACATGTTTTCGGGAAGGTATACGAGGGTATTAGCATAGCCTGTC
CACGCCTCAAATGTTTGAAGGTCAACTATCCTTGCTTCTATAACATCGAAGATATCGAGTATAACAAGGATGAGGAAGCT
CTGGGGATTGCAACAATGTTTGTGCTACCCTCCCTTCAACTGTTTGGCAGCGAACTCACCAACGTAGGATTGGCAACAAT
CCTTGATAACTGCCCTCACCTTGAGTATTTGGACATTCGCCATTGTTTCAATATCCACATGGACATCACCCTGCGTGCAA
AGTGTGCTAGAGTAAAGACGATGAGGCTTCCTCATGACTCAACTGATGACTATGAGTTCCAGATTGAAAACCTAGTTCGA
ACACGTGCAAGGAAACCTAGGTGAGATTACAAACCGTACGTCTGATGGAAATCCGAAACTTGACTTCTTTCATGCCAGCT
TTCGGGTTGAGGCTGCAAGAGTACTGTTTTTTCTTGGTGCAGTTAGGAGTTTAACATCAAATGCTTGCAGCCTGCTGTCA
ATAATCACTGTGAAATCTGAAGCCAACGATGACC--------------------TACCTATATCATCTATTGTGTACTGA
CATGAACATGCGAATATGGAAGACTGCCCCCAGGAGCTGGGGCACTTTCCATGTGTTATAACCTAAGTAAGCATGATTAG
TTAAAGGGAAATCTACCCTTGCCCAAACCGGCTTAGGCTGTGCCTGGTTTATCTGTAGATTATGAAAAGGCTACTAGGAT
ATGTGGGAAAGCAGCAGCTGTGAGCTGGGGAAAAGCTGGAAGTTGTTTGGTTGGAGCAACCAAAACTGTGGGTTTGGTAG
GAATTGTATGTAACATCCCTGAG--------------------GGCTTGACTATATGCTAATTCATCATAAAACACTGAT
CTGTAAATTAATTACCGCATCAATGACCAATTTGGAAAAGAAAAAACCCATATTTTAGATGTTGCATATGTAGACTTGAA
ATATCAATGAAATGCCTCACATTTGCATAAAGTACTGCCTTCTCACACATAGTTTTTTTGCGAGAGAAATTTCCAATCTA
TTCATCAATCATGGCAGCACAGAGAACACAAGAGGTAATAAAAATTACAACCAGGTCTATGGACCACCTAGCGACGACTA
CAAGCACTGGAGCGAGCCAAAGGCGCGCCGCCGTCATCGCCCCTCCATCACAGGAGCCGGGCAAACCTTGTTATAGTAGA
TAGTCGGGAAGTCGTCATGCTAAGGCCCCAAAGAACCACCACACTGGAGCAACAATCATCGCTGATGAAGAGAGTCGTAG
ATTGGAAAGATCAAACCTGGAACCACACAAATGAAGACGAACAAAAACAGGATCCAAATAGATCCACCGCAGACCAGCAC
CGACCGAATCCCATGAGATCCGAC
>chr1D_290
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-------------------------------------------------TCTGGCGCCGCATCGACATGCGCATCCACAA
ATATCACAACTACCGGATTGACGAAGGCATGGCGAAGGAAGCCGTCCGGCGGGGGTCGGGCCGGTGTGAGTCCTTCTGGG
GCGAAGACGCCACCGACCACTTCCTCCTATTCCTCACCGAGCAGTGAGAT-----TTCTTTATTTCTCCCCTCCCCTCTC
GATGGAAGATTGGGCTTCATGCCTGGCTTCGATTTTCCTTATTCTGCAATTAGGGTATTGTAGA----------------
-------TAGATCATTAGCGCAACTTATGATTTACTAGTCGCGTGCATTTTTCTTAAGCTGCTACGGCAGGCAAAAGCAC
ACGACGGCTATAGGACGTAGCGCACGACACACAAGGATCAG---GGAAGCAGAGGAAGAGAACTGAAATGAGAACTAGAA
ACGAGCTACAACAAACAACCACCACCAAGAGCTCAGCAACCATCGCCATTAGATCAGACCGAGAA---------ACTAGC
ATAGTTGGATCAGTGGAAAGGAAATCTGACACCGAGAAGACCCAGAGAAGAAGTCGCTGC----CCCTGGGATCACTCTT
CACCTTCAAGACATAGGAGAGTGTCACATCTATTGTCGAAGGGCTTCCCACCACCTAGCCACGTTGTGACAAAGAGAGGC
AATGATCTGCCGAGACAGCCCCTGCACCTCCTCTTGGCCACCCCATGGCCACCATCATAAATAGAATGAACTAGAGCCCT
ATGCAAGGCAACGAAACCTCAAGCGCAATCGAAGGTCACTGAACTTTGAGACATCACCAACGTCGCGAGCACTCATGAGA
GGCACTCATGAGAGGAGGTCGATCAACAACACCAGGATGACCAAGGCACCCCAGACGCCCCAAGAAGTGCCAGCAAACCA
ACCGGGACCCCTAACGACCGACCGCAAATCAACGGCTCGAAGGCGACGCCCCCAAGGGGGAAAATGACATCGATGGCGTC
TTTGTCGTTGGATCCAATATGGATCTAAGGCTTTTGCCCGGAGCATACCATGGAACAAAGACGGAAGCTTCTCGATGACA
CCTCCGAGGAAAAAATGTGGCCCATAGGTGTCGCCGTCATTGTTGCCGACTAGGTCGGCACAAGGCTTTCGTCCGAAGCA
TCACGTTCCCACCTCACCGCATCACACTCGCCGCCGAGTCCTGCAAGCACATGAGCGCGAGACCTTCCCCACCTCTTGCT
GCTCGGCGGCGAGTATCCTCGCTGGATCGAACAAGATGGCCACCTTTGATGCAAGCAAACCTGGCTTTGGTTCGCATTCA
AGTTTAAAGAGAATCCGCTCTATATAACAAGAAATTTGCATTCAAGTTTAAAGAGAAACCGCTAGTCCGCTCTTATATAA
CAAGAAACGAATTTAGAACCCTTGAACCCCTTGCAATTGGCCTGCAGAAACCAAATGGATTCCTTCATCAGTATATATAA
AATAAAACTAAGATGCACTTAAGTACCATAATTGAACTATACTGTTTGACATAGAGAATAATCGTTCTTACAGAAGAAAC
AAAAAAGAACCAATCGTCTTGTGAAAGAAGTTTGCCTAGATTGGCTGTATGCTTTCATGTTGCTGGCTTGCTGCTCTTAT
CTCTGGATATTCCATAGGCTGGCATGAATGGATGACTGCAGAGCACAGTCATCATTTCCAGCAGTGTATTGAATACTGAT
GCTGCATGTTTCTTTGGTGAGAGGAGGAGATCGCATTATCATGTCGTAGCAGTGCATGGAAATGAGTGCCTTATCATGCA
GCATTAAGTTCATATTTTGCACATGTACATGGAAACAGAAGTAGCAAACTGCCTTTTATTCTTTGCTTCAACAGATACCA
TCACTTAGCCCCACTTCAGTCAGTATGTCCTTAGCTTACATAGCAGCTTTATGTTCTTTCCCGGCAGTTTGATCTATTTC
GTTCCTTCTATTAGCTAGCTGTTCTTCCAGGACAGTACAATGGATATTGGTTATTAACATCAAAGCTCTCTGTTTCCAGG
GCACCATCTCTAAAGAGCCTTCGCCTCATATCTTCTAAGCACATCACTAACGAAGGGTTGTTGGCGGCACTTAATAAGTT
TCCTGTGCTTGAGGAGCTTGAGCTTTCACTTTGCAAACATGTTTTCGGAAAGGTATACGAGGGTATTGGCATAGCCTGTC
CACGCCTCAAATGTTTAAAGGTCAGCTATCCTTGCTTCTATAGCATCGAAGATATCGAGTATAACAAGGATGAGGAAGCT
CTGGGGATTGCAACAATGTTTGTGCTACGCTCCCTTCAACTGTTTGGCAGCGAACTCACCAACGCAGGATTGGCAACAAT
CCTTGATAACTGCCCTCACCTTGTGTATTTGGACGTTCGCCATTGTTTCAATATCCACATGGACATCACCCTGCGTGCAA
AGTGTGCTGGAATAAAGACGATGAAGCTTCCTCATGGCTCAACTGATGACTATGAGTTCCAGATTGAAAACCCAGTTCGA
ACACGTGCAAGGAAACCTAGGCGAGATTACAAACCCTACGTCTGATGGAAATCCGAAACTTGACTTCTTTCATGCCAGCT
TTCGGGTTGAGGCTGCAAGAGTACTGTTTTTTCTTGGTGCAGTTAGGAGTTTAACATCAAATGCTTGCAGCCTGCTGTC-
--AATCACTGTGAAATCTGAAGGCGACGATGACCAATGTGATTCTTATCATTACTACCTGTATCATCTA-TGTGTACTGA
CATGAACGTGCGAATATGAAAGACTGCCCCCAGGCGCTGGGGCACTTCCCATGTGTTATAACTTAATTAAGCATGATTAG
TTAAAGGGAAATCTACCCTTGCCCAAACCGGCTTAGGCTGTGCCTGGTTCAGCTGTAGATTATGAAAAGGCTACTAGGAG
CTGTGGGAAAGCAGCAGCTGTAAGCTGGGGAAAAGCTGGAAGTTGTTTGGTTGGAGCAACTGAAACTGTGGATTTGGTAG
GAATTGTATGTAACGCCCCTGAGGGCTTGATTATATGGTGAATGGCTTGATTATATGCTAATTCACCGTAAAACACTGAT
CTGTAAATTAATTACGGTATAAATGACCAATTTGGAAAGGAAAAT-CCCATATTTTAGATGTTGCATATGTAGACCTGAA
ATATCAATGAAATGCCTCACATTTGCATCAAGTACTGCCTTCTCACACATACTT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S------S----------
-S----S---------------------------------------------------S-S-S---------------S-
-------S---------------------------S--------------SSSSS-----------------------S-
--SSS----------------S---------S------------S-------------SSSS-SSSSSSSSSSSSSSSSS
SSSSSSS---------------S---------------------------------------------S------S----
----------S----------S--S----------S-SS-SSSS-------S----------------------------
--S--------------S---------------S----S-----S--------------------SSSSSSSSS------
-------S---------------------------------SS------------SS--SSSSS----------------
--------------S---------------S-------------------------------------------------
-------S-------------------------------------------------S----------------------
-----------------------S--S-------------------------------------S---------------
----------------------S----------------------------S-------S--------------------
-SS-------------------------------S-------S----S-----S-S--------------S------S--
--------------------------------------S----------------------S------------------
---S----------------------------------------------S------S---------------S------
----S-----S--------S----SS---S---S------SS--------------S-----------------------
-S-S--S--S------------S-------------S-----------------------S--------S----------
S------------------------------------S---------------------SS-------------------
-------S------------SS-----------S--S----S--------------------------------------
---------------------------------------------------------------S--S--S----------
--------S-------------------------------------------------------S-------S-------
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--------------------------------------------------S-----------------------------
-------------------------------------------------------S-----S-SS---------------
------------------S----------------------------S--------------------------------
------------------------S--------------S----------S-------------S---------------
------------------------------------------------S------------------S------------
----------------S-------S-----------------S-------------------------------------
----------------------------S-----------------------------------S---------------
-----------------------S----------S---------------------------------------------
--------S--S------------S-----------S-----------------------------------S-------
---------------------S-------------S--------------------------------------------
-------------------------------------------------------------------------------S
SS--------------------S-S----------------------------------S---------S----------
-------S----------S---------------S------------S--------------S---S-------------
-------------------------------------------------S-S---------------------------S
S--------------------S--------------------------------------SS---------S--------
--------------SS----------------------------------S--------------S-S------------
---------------S-S--S-----------------S-----SS-----------------------------S----
----------------------------S----------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_38
------------------CCCGCACCTCTATCCGTTAC------------------------------------------
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>reverse_1451
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----------GCCTCACCGTATCATGCTCA--------------------------------------------------
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>forward_196
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----------------ACTTGGGCCTCTGGTTCATG--------------------------------------------
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>reverse_2371
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--------------------------------------------------TGAAGGGTTGTTGGAGGCAC----------
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>forward_1470
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----------GCCTCACCGTATCATGCTCA--------------------------------------------------
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>reverse_3594
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-------------------------------------------------------------------------ACGACTA
CAAGCACTGGAGC-------------------------------------------------------------------
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------------------------
