>input_sequence_47185
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-------------------------------ATGGGGGCGGATGGGAAGAAGCCGTACGTGATCGCCGTGATCATACAGG
TGATCTACACCGGCATGTTCGTCGTCTCCAAGGCGGCCTTCAACCAGGGGTTCAGCACCTACGTCTTCATCTTCTACCGC
CAGGCCGCCGCGTCTCTCCTCTTGCTACCACTCGCCATTGCCCTCGAGAGGTA--------------ACTCTCTAG--CT
GGTTCTGCTCGGGCTAC------CTAGCACTAGCAAGAGGATCGTATAAGAATCAGGCGCTGATTTTG------------
-----CAGGAAAAACGCGTGGGCAATGTCGTTCCGGTTGCTCCTGAAGCTGTTCATGTTTGCCTTGATCGGGTAA----C
TAATTAAGCGACGCATGCTTCTCGAT------------------------------------------------------
-------------------------------------------------------------------CTCATCAC-----
----------A-----AGCTGTTTATGTGCAACAAAGTGGAGATGGAGATGGATTACTGATCGATGTTAATATGGCTTTG
TTTCCAGGACTACATTTAGCTTGAATCTGTACAACGTGAGCCTCAAGTTGACATCTGCAACCGTGGGATCTGCGACCAGC
AACTCCATGCCGGTGGTCACCTTCTTCATAGCGCTTCTGCTGAGGTACTAATCCAGCGAGTAAATCGACCCAGCTCCCTA
CCACTGTACGATCATACTACGTACGTTGTG--------------------------------------------------
-----------------------------------------------------------------------------ACA
T-ACTGACATGTACACTTGGCTGGCCTTAGGATGGAGGTGGTGAAGCTGAGGAGCCCCTCGGGCATGGCCAAGGTGGCCG
GCGTGGGGCTCTGCCTCGCCGGGGTGCTCGTCATCGCCTTCTACGTGGGGCCGTCCCTGAACCCGGTGAACCACCACCGC
GCCCTGGCTGCCGCGACCGGAGACGCCGGCGCGACGAGGGGGACGTGGATCATGGGCACCTTCCTCATGGTGCTCGCCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCCGCGCTGCTCAAGGAGTACCCCAACAAGCTGCTCGTGACGGCGACGC
AGTGCGTCTTCAGCGCCGGCCAGTGCTTCGTCGTCGCGGCGGTCGCTGAGAGGGACTTCTCCAGGTGGCAGCTCCGCTTC
GACGTCACCTTGCTCGCCGTCCTCTACACCGTAAGGCT---TCTTAATTCTCTGTCTTGTCAATGGTGA-----------
----------TGGATCGGTGCATGGAGTGGACTGGAGGCTGATGTGTGGATTG---ATTCAGGGGTTCGTGGTGACGGGG
GTGTCCTACTACCTGCAAGCATGGTGCGCGGACATGAAAGGGCCGGTCTTCCTCGCCGTGTGGACCCCGCTCTGCTTCGT
CCTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATCGTTCACCTCGGCAGGTACGATCAGCAGCTAG-------CT
TTCAAGCTTCAATTGCACTGCTGATCTACACACGGCTGCT---GAACTTCAAGTTCATTTGCTCTTCTTTTTCATTGATT
TTTGCAGTATCTTGGGTGGAGTCCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGCAAAAGCAAGGAGAACCGGATT
GCGCCATGTGGCGAGACGAAT---ATGATCCATGGCGTGGAGGGCGAGAATTCTGCAGATGATGAGGAGAAGAACGAG--
-AGGAGCAACCAAGTTAACGGGGAGAGGGAGCACGATAAGGAAGTAACGATGTCGCCGGCTGAACAAGTCTGA-------
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>chr3D_1_TraesCS3D01G328900
ATAAACCCATAGACCAAAAGTTCCACTCCCAAAAGTAGTCCATATGTAAGACACAGAGTTTCCCTATCAATAGAAAGTGA
GGTTTCCCACGGTACTGAGTACACTCTCCAGTTAGAATTCCGAACCGTCTGTGAGATGATAAAAAGTGTCGATCAGTGAC
AGAAGAGAGCCAGTTGAGCAGAGATAGTTGAGGAAATAATCATCCCATACGAAACTGTTCCGTGATAGTGCATGCTGCGT
CACCACACTGTGCAATGA------AATTATCTCCCTCACTGC--------------------------------------
-------CAAAGGCCTAATCAGCGGGCTG--------CAGGCACCACACTAATTATGCTTAGAAAGATCCCACGTATCAG
TCGACAGGCCGGGAGCAAACATGTGGCACCAGGAATTGTTAATTTGAATTTCCTAGACTTGACTGGCCACTCACAAGGTC
GCCTTTGTTTTCTGCCGGGACGGCTTAGCTCAAGACCCAGC-CAGACCTCATTAGCAAGTATACGTACTATTAGTACTTA
ACAGCTCGAACTAATCAGGCACAGCAGAGCAGTGTGACCAATGCTGCTGCGTCT------GCGTGCGCGTGCTCTAGTCA
AGAAGACGGTCCAATTCACACTTGAGC-----------CCCATAAACCATGGAGCATTTGTTGCTGTTGTTGTCTCAGGG
CGTCACCGTGTTGAACCC-ATCC------------------AGTAAACAAGCTTACTGGTGCTAATCAGTACTCCAGTCT
AGCATTATACATTGACACAGGAGCACTCTTTCTAAAT--------TAGCTGAGAGGTACTCCTGTTGACTCGAGAAATGC
AGGTCTTTTCCCCTGCTTCCTAGCC--TAAACAACCCAAAGAAAATCAGGTTTAGATGCTG-----CTACGTACTCCAGC
TCAGTGTTGTAGC----TCGGCGTGGCAGCA------------TAAGTAGCTGAGCTTAGCTGCAGGGGTTCAGACACCA
GCGCAGAACAGAGAGGCGACCATCGTATTCATACTCTCTGACCACACTCCGATCT---CTGTTGGGTTCCTGACAG----
-----------AGC------TCACTGCCGGCATGGGGGCGGATGGGAAGAAGCCGTACGTGATCGCCGTGATCATACAGG
TGATCTACACCGGCATGTTCGTCGTCTCCAAGGCGGCCTTCAACCAGGGGTTCAGCACCTACGTCTTCATCTTCTACCGC
CAGGCCGCCGCGTCTCTCCTCTTGCTACCACTCGCCATTGCCCTCGAGAGGTA--------------ACTCTCTAG--CT
GGTTCTGCTCGGGCTAC------CTAGCACTAGCAAGAGGATCGTATAAGAATCAGGCGCTGATTTTG------------
-----CAGGAAAAACGCGTGGGCAATGTCGTTCCGGTTGCTCCTGAAGCTGTTCATGTTTGCCTTGATCGGGTAA----C
TAATTAAGCGACGCATGCTTCTCGAT------------------------------------------------------
-------------------------------------------------------------------CTCATCAC-----
----------A-----AGCTGTTTATGTGCAACAAAGTGGAGATGGAGATGGATTACTGATCGATGTTAATATGGCTTTG
TTTCCAGGACTACATTTAGCTTGAATCTGTACAACGTGAGCCTCAAGTTGACATCTGCAACCGTGGGATCTGCGACCAGC
AACTCCATGCCGGTGGTCACCTTCTTCATAGCGCTTCTGCTGAGGTACTAATCCAGCGAGTAAATCGACCCAGCTCCCTA
CCACTGTACGATCATACTACGTACGTTGTG--------------------------------------------------
-----------------------------------------------------------------------------ACA
T-ACTGACATGTACACTTGGCTGGCCTTAGGATGGAGGTGGTGAAGCTGAGGAGCCCCTCGGGCATGGCCAAGGTGGCCG
GCGTGGGGCTCTGCCTCGCCGGGGTGCTCGTCATCGCCTTCTACGTGGGGCCGTCCCTGAACCCGGTGAACCACCACCGC
GCCCTGGCTGCCGCGACCGGAGACGCCGGCGCGACGAGGGGGACGTGGATCATGGGCACCTTCCTCATGGTGCTCGCCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCCGCGCTGCTCAAGGAGTACCCCAACAAGCTGCTCGTGACGGCGACGC
AGTGCGTCTTCAGCGCCGGCCAGTGCTTCGTCGTCGCGGCGGTCGCTGAGAGGGACTTCTCCAGGTGGCAGCTCCGCTTC
GACGTCACCTTGCTCGCCGTCCTCTACACCGTAAGGCT---TCTTAATTCTCTGTCTTGTCAATGGTGA-----------
----------TGGATCGGTGCATGGAGTGGACTGGAGGCTGATGTGTGGATTG---ATTCAGGGGTTCGTGGTGACGGGG
GTGTCCTACTACCTGCAAGCATGGTGCGCGGACATGAAAGGGCCGGTCTTCCTCGCCGTGTGGACCCCGCTCTGCTTCGT
CCTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATCGTTCACCTCGGCAGGTACGATCAGCAGCTAG-------CT
TTCAAGCTTCAATTGCACTGCTGATCTACACACGGCTGCT---GAACTTCAAGTTCATTTGCTCTTCTTTTTCATTGATT
TTTGCAGTATCTTGGGTGGAGTCCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGCAAAAGCAAGGAGAACCGGATT
GCGCCATGTGGCGAGACGAAT---ATGATCCATGGCGTGGAGGGCGAGAATTCTGCAGATGATGAGGAGAAGAACGAG--
-AGGAGCAACCAAGTTAACGGGGAGAGGGAGCACGATAAGGAAGTAACGATGTCGCCGGCTGAACAAGTCTGATTTGATC
GAGTGAAGGAGGCTCCATCTATCTCATTCATGCGATGCATCCATTATTCGAGCAACTATGAATTATATTCAACTCAATAC
ACAAAGAAGAGAAACGGCGAACGGACCTGATTGGGTTTATGATCAGTACTCTTTGGCTAATTCTTAGTTGCTTAATTTTT
TA-CAAATCCCGGTCACCTCAAATTGCATATATC---ACTAAGCCTTACACTGTAATCTTTGAAGGTGTGCAACTTGTAG
CATGTATGTTATATATGCAGTAACTTGGACATGGCAATGGTTGGATGTTGCTCCAAAGGATTACAAATATGGTTGCGATT
TATAAAAGTCCGATGGAAATCAATAGACCGTGATACAGGATTTTGCCTGTTCTTATGTATTGCAGGGTCGCCTCATTATT
CAAGTTTTTTT-ATTTTCTTTTTCCATTGGTTTTCAC--GTTTTTTCCCTGTTTTTCCTTTCTGTTTTTTGAGAAGGTTT
TCTTCATTTTTGTTTGGTTTT-----------------------------------------------------------
-------------------------------CTTTTTTCT--TCTCCATTTTTTGTTTGCTTTTCATTTTTCATCTCCAT
TTT----------------------TTATGTTTGTTTTTATTTTCACTCTACAATTTCGTATATATCAAAAACATTTTTT
TTCAATAAGTGATCAACATTTTATATATACATG-----------------------------------------------
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----------------------------------------------------------TTCAACATTGTCCGAACGCTTA
TTCAACATTTTTCAAATACTTATTCAACAT-------------------TTTTTCAAATACTTGTTCAATATTTTTCAAG
TACTTGTTCAATAT--------------------TTTTTCAAATACTTATTCAACATTTTTAATACTTATTCTACATT-T
TGAAATACTTGTTCAACATTTTTCAAATACTCGTCAACATTATTATTACTTATTCTATATTTTTAAATACTCATTCAACA
TTTTTTAATACTTGTTCAACAGTTTTCAAATACTTGTTCAACATTTTTCAAAGACTCATTCAATATTTTTAATACTTATT
TAATATTTATCAGCTGCTTGTTAAACATTTTTTCAAATGTGTTTTAAAGAGCATTTTTT
>chr3B_156
GTGACAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAGAGAGCCAGTTGAGCAGAGATAGTTCAGGAAATAATCCCTTAATTACGAGCTGTTCAGTGATAGTGCATGCTGCGT
CACCACACTGCCCAATGATAGACCAATTATCTCCCTCGCTTGGAAGAAGAAGCGGGTGATGCTCCTAGCTACTAGTACGT
ACTTAAACAAAGGCCTAATCAGCGGGCTGCAGGCAGCCAGGCACCACACTAATTATGCTTAGAAAGATCCCACGTATCAG
TCGACAGGTCGGGAGCAAGCATGTGGCATAAGGAATTGTTAATTTGACTTTCATAGACTTGACTGGCCACTCACAAGGCC
GCCTTTGTTTTCTGCGGGGACGGCTAAGCTGAAGACCCACACCAAATATCATTAGCAAGT------ACTCCTCCTAATTA
ACAGCGGGGACTAATCAGGCAC-----AGCAGTGTGACCAATGCCGCTGCGTCT------GCGTGCGCGTGCTCTAGTCA
AGAAGACGGTCCGATTCACACTTGAGTCTGCATGCAAGCCCATAAACCATGGAGCATTTGTTGCTGTTGTTATCTCAGGG
CGTCACCGTGTTGGACCCAATCC------------------AGTAAACAAGCTTACTGGTGCTAATCAGTACTCCGGTCT
AGCATTATACATTGACACAAGAGCACTCTTTCAAAATACAAATACTAGCTGAGAGCTACTCCTATTGACTCGAGAAATGC
AGGTCTCGCGTCCTACTTCCTAGCGTATAAACAAGCCAAAGAAAATCAGGTTTAGATGCTG-----CTACGTAGTCCAGC
TCAGTGTTGTAGC----TCAGCGTGGCAGCA------------TAAGTAGCTGAGCTTAGCTGCAGGGATTCAGACACCA
GCGCAGAAGACAGAGGCGATAGTTG-GTTCACACTCTCTGACCACACTTTGATCT---CTGCTGGGTTCCTGACAG----
-----------AGC------TCGCTGCCAACATGGGGGCGGATGGCAAGAAGCCGTACGTCATCGCGGTGATCATACAGG
TCATCTACACCGGCATGTTCGTCGTCTCCAAGGCGGCCTTCAACCAGGGGTTCAGCACCTATGTCTTCATCTTCTACCGC
CAGGCCGCCGCGTCTCTTCTCCTGCTGCCTCTCGCCATTGCCCTCGAGAGGTA--------------ACTGTCTAAAACT
TGTTCTGCTTGAGCTTAG---CTCTAGCGTTAGCAAGAGAATCATGTAAGAATCGGCCGCTGATTTTG------------
-----CAGGAAAAACGCGCGGTCAATGTCGTTCCGGTTGCTCCTGAAGCTGTTCCTCTTTGCCTTAATCGGGTAAGTAAT
T-ATTAAGCAAAGCATGCTTCTCGAT------------------------------------------------------
-------------------------------------------------------------------CTCATGGACCGCT
GCACGTAATTA-----AGCTGTTTATGTGCAACAAACCGGTGATGA------ATGACTGATCCATGTTGATATGGTTCTG
TTTGCAGAACTACATTTAGCTTGAATCTGTACAACGTGAGCCTCAAGTTGACATCCGCAACCGTGGGCTCTGCAACCAGC
AACTCCATGCCGGTGGTCACCTTCTTCATAGCGCTTCTGTTGAGGTACTAATCGACCCA----------------CCCTA
CCACTGTACGATCATACTACGTACGTTGTG--------------------------------------------------
-----------------------------------------------------------------------------ACA
T-ACTGACATGTACACTTGGCTGGCCTTAGGATGGAAGTGGTGAAGCTGAGGAGCCCGTCAGGCATGGCCAAGGTGGCCG
GCGTCGGGCTGTGCCTCGCCGGGGTGCTCGTCATCGCCTTCTACGTGGGGCCGTACCTGAACCCGGTGAACCACCACCGC
GTCTTGGCTGCCGCGACCGGAGACGCCGGCGCGACGAGGGGGACGTGGATCATGGGCACGTTCCTCATGGTGCTCGCCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCTGCGCTGCTCAAGGAGTACCCCAACAAGCTGCTCGTCACGGCAACGC
AGTGCGTCTTCAGCGCCGGCCAGTGCTTCGTCGTCGCCGCGGTCGCCGAGAGGGACTTCTCCAGGTGGCAGCTCCGCTTC
GACGTCACCTTGCTCGCCGTCCTCTACACCGTAAGGCTTCATCTTAATTCTCTGTCTTGTCAATGGTGAACTCCCGGTT-
-G-------ATGGACTGGTGCATGGGGTGGACTGGAGGCTGATGTGTGGATTG---ATTCAGGGGTTTGTGGTGACGGGG
GTGTCCTACTACCTGCAAGCATGGTGCGCGGACATGAAAGGGCCGGTCTTCCTCGCCGTGTGGACCCCGCTCTGTTTCGT
CCTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATCGTTCACCTCGGCAGGTACGATCAACTTCATTCCTTCTTCT
TTCAAGCTTCCGCTGCACTACTGATCTACACACGGCTGCT---GAACTTCAAGTTCATTTCTTCT--TTTTTCATTATTT
TTTGCAGTATCTTGGGCGGAATCCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGTAAAAGCAAGGAGAACCGGATT
GCGCCATGCGGCGAGACGAAT---ATGATCCGTGGCGTGGAGGACGAGAATTCTGCAGATGATGAGGAGAAGAACGAG--
-AAGAGCAACCAAGTTAACGGGGACAGGGAACACGATAAGGAAGCAACGATATCGCCGGCTGAACAAGTCTGATTTGATC
GAGTAAATGAGGCTCCATCTATCTC----ATGCGATGCATCGAGCAAATGTGAATTCTGATTAGATTGGGGAACAAA---
-------------------AATGGCCCTAATTGGATTTATCACC---ACTCTTTGGCTAATTCTTAGTTGCTTAATTTTT
TAACAAATCCTGATCACCTCAAATTGCATATTATGTTACTAAGCCTTACAATGCAAAGTTTGAAG---------------
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>chr3A_277
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-------CAAAGGCCTAATCAGCGGGCTG--------CAGGCACCACACTAATTATGCTTAGAAAGACCCCACGTATCAG
TCGACAGGTCGGGAGCAAACATGTGGCACCAGGAATTGTTAATTTGACTTTCCTAGACTTGACTGGCCACTCACAGGGTC
GCCTTTGTTTTCTCCCGCGACGGCTAAGCTGAAGACCCCGA-CAAATCTCATTAGCAAGG------ACTACTCCTAATTA
ACAGCGGGGACTAATCAGGCAC-----AGCAGTGTGACCAATGCCGCTGCGTCTGCGTGCGCGTGCGCGTGCTCTAGTCA
AGAAGACGGTCCAATTCACACTTGAGTGTGCATGCAGGCCCATAAACCATGGAGCATTTGTTGCTGTTGTCGTCTCAGGG
CGTCACCATGTTGAACCCATCCAGTAAACAAGCTTAGAAAAAGTAAACAAGCCTACTGGTGCTAATCAGTACTCCAGTCT
AGCATTATACATTGACACAGGAGCACTCTTTCAACAT--------TAGCTGAGAGGTACTCCTGTTGACTCGAGAAACGC
AGGTCTTTTTCCCTGCTTCCTAGCC--TAAACAACCCAAAGAAAATCAGGTTTAGATGCTG-----TTACGTACTCCAGC
TCAGTGTTGTCGCTCGATCGGCGTGGCAGCA------------TAAGTAGCTGAGCTTAGCTGCAGAGATTCAGACACCG
GCGCAGAAGAC--AGGCGATAACCG-GTTCACACTCTCTGACCACACATTGATCT---CTGTTGGGTTACTGACAGAGCC
GTGGTAGCTGAAGCTCAAGCTCGCTGCCGGCATGGGGGCGGATGGCAAGAAGCCGTACGTGATCGCGGTGATCATACAGG
TGATCTACACCGGCATGTTCGTCGTCTCCAAGGCGGCGTTTAACCAGGGGTTCAGCACCTACGTCTTCATCTTCTACCGA
CAGGCGGCTGCGTCTCTCCTACTGCTGCCTCTCGCCATTGCCCTCGAGAGGTA--------------ACTGTCTAAAACT
TGTTCTGCTTGAGCTAGACCCCTCTAGCGTTAGCAAGAGAATCATGTAAGAATCAGGCGCTGATTTTG------------
-----CAGGAAAAACGCGCGGTCAATGTCCTTCCGGTTGCTCCTGAAGCTGTTCATGTTTGCCTTGATCGGGTAATTAAC
TAATTAAGCAAAGCATGCTTCTCGAT------------------------------------------------------
-------------------------------------------------------------------CTCATGGACCGCT
GCACGTAGTTA-----AGCTGCTTATGTGCAACAAACTGGAGATGA------ATGACTGATCGATGTTAATATGGTTTTG
TTTGCAGGACTACATTTAGCTTGAATCTGTACAACGTTAGCCTCAAGTTGACATCCGCGACCGTGGGCTCCGCAACCAGC
AACTCCATGCCTGTGGTCACCTTCTTCATAGCGCTTCTGCTGAGGTACTGATCCAGCCTTG-------------------
-TACTGTATGATTGTACTAGCTACTTGAGGCTCACCTTAGTGCCAG----------------------------------
--------------------------------------------------------------------------------
--ACTGACATGTACACTTGGCTGGCCTTAGGATGGAGGTGGTGAAGCTGAGGAGCCCCTCGGGCATGGCCAAAGTGGCCG
GCGTGGGGCTCTGCCTCGCCGGGGTGCTCGTCATCGCCTTCTACGTGGGTCCGTCACTGAACCCGGTGAACCACCACCGC
GTCTGGGCTGCCGCGACCGGAGACGCCGGCGCGACGAGGGGGACGTGGATCATGGGCACCTTCCTCATGGTGCTCGCCAA
CGTGACGTGGTCCGTGTGGATCGTGCTGCAGGCGGCGCTGCTCAAGGAGTACCCCAACAAGCTGCTCGTCACGGCGACGC
AGTGCGTCTTCAGCGCCGGTCAGTGCTTCGTCGTCGCCGCGGTCGCCGAGCGGGACTTCTCCAGGTGGCAGCTCCGCTTC
GACGTCACCTTGCTCGCCGTCCTCTACACCGTAAGGATTCTTCTTAATTCTCTGTCCTGTCAATGGCGATGAACTCCTGG
CG-------ATGGATTGGCGCATGGGGTGGACCGGAGGCTGATGTGTGGGTTG---ATTCAGGGGTTCGTGGTGACGGGG
GTGTCCTACTACCTGCAAGCATGGTGCGCGGACATGAAAGGGCCGGTCTTCCTCGCCGTGTGGACCCCGCTCTGCTTCGT
CCTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATCGTCCACCTCGGCAGGTACGATCAACAGCTAG-------CT
TTCAAGCTCCAACTGCACTGCTGATCTGCACACGGCTGCT---GAACTTCAAGTTCATTTCTTCT--TT-------AATC
TTTGCAGTATCTTGGGTGGAATTCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGCAAAAGCAAGGAGAACCGGATT
GCGCCATGCGGCGAGACCAAT---ATGATCCATGGCGTGGAGGGCGAGAATTCTGGAGAAGATGAGGAGAAGAACGAG--
-AGGAGCAGCCAAGTTAACGGGGACAGGGAGCACGATAAGGAAGCAACGATATCGCCAGCTGAACAAGTCTGATTTGATC
GAGTGAAGGAGGCTCCATCTATCTC----ATGCGATGCATCCATTATTCGAGCAACTATGAATTATATTCAACTCAAACC
ACAAAGAAGAGGAACGGCGAACGGCCCTGATTGGGTTTATGATCAGTACTCTTCGGCTAATTCTTAGTTGCTTATTTTTT
TTACAAATCCCGGTCACCTCAAATTGCATATATC---ACTAAGCCTTACACTGTAATCTCTGAAGGTGTGCAACTTGTAG
CATGTATGTTATATGTGGAGTAACTTGGACATGGCAATGGTTGGATGTTGCTCCAAAGGATTACAAATATGGTTGCGATT
TATAGAAGTCCGATGCAAATCAATAGACCGTGATACATGATTTTGCATGTTC-TATGTATTGCAGGGTTGCCTCGTTATT
CAAGTTTTTTTCATTTTCATTTTCCATTGGTTTTCACCCGTTTTTTTCCTGTTTTTCCTTTTTGTTTTTTGAGAAGGTTT
TCTTCATTTTTGTTTGGTTTT-----------------------------------------------------------
-------------------------------ATTTTTTTTTCTCTCCATTTTTTGTTTGCTTTTCATTTTTCATATCTAT
TTT----------------------TTATGTTTGTTTTTATTTTCACTCTACAATTTCGTATATGTCAAAAACA-TTTTT
TTCAATAAGTGATCAGCATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAACATTGTCCGAACGCTTA
TTCAACATTTTTCAAATACTTATTCAACAT-------------------TTTTTCAAATACTTGTTCAATATTTTTCAAG
TACTTGTTTAATAT--------------------TTTTTCAAATACTTATTCAACACTTTTAATACTTATTCTATGTT-T
TGAAATACTTGT-CAATATTTTTCAAATACTCGTGAACATTATTATTACTTATTCTATATTTTCAAATACTTATTCAACA
-TTTTTAATACTTATTCAACAGTTTTTAAATACTTGTTCAACATTTTTCAAATACTCATTCAATGTTTTTAATACTTATT
CAATATTTTTCAAATGCTTGTTAAACATTTTTTCAAATGTTTTTTAAAGAGCATTTTT-
>chr2B_790
TGT-----------------------------------------------------------------------------
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----------------TTCCTAGCC--TAAACAAGCCAAAGAAAATCAGATTGCGATGCTA-----CTAC----TCCAGC
TCAGTGTAGCTTGC--ATTGGTGTGGCATCA------------TAAGTAGCTG----------CAGAGACTCAGACACCA
TCACAGGACAGAGAGGCGACAATCG-ATT--CACGCTCTGACCACACTTTGATCTGATCTATTCGGTACCTGGCAGAGCC
GTGGTAGCTCAAGC------TCGCTGCCGGCATGGAGGTGAATGGCAAGAAGCCGTACGTCATCGCGGTGATCATACAGG
TCATCGCCACCGGCATGCTCGTCACCTCCAAGGCGGCGTACAACCAGGGGTTCAACACCTACGTCTTCGTCTTCTACCGC
CAGGCGGCCGCGTCTCTTCTCTTGCTGCCTCTTGCCATTGTCCTCGAAAGGTACTGCCTCAGAGCTAACTATCTAT--CT
CGTACTACT-----TGAG---CTATACTTCTAGCAAGGGAACCATGCATGCAAGTAAGGTCGATGATGAGTTGCAAACTG
ATTCCCAGGAAAAACATGCGGTTAATGTCGTTCCAGTTGCTAATGAAGCTGTTCCTCTATGCCTTACTCGGGTAAGTAAG
CAACGCATGC-----TGCTTGTCCAT------------------------------------------------------
-------------------------------------------------------------------CTCATCAATCGCT
GCACCTAATTACTACTAGCAGTGTATGTGCAACTAATTGGAGATGA------ATGACTGATCGATATTTT----------
----CAGGACTACATTTAGCTTGAATCTGTACAATGTGAGCCTCAAGTTAACATCTGCAACCGTGGGGTCTGCAACCAGC
AACTCCATGCCCGTGGTCACCTTCTTCATAGCGCTACTGCTGAGGTACGTACC---------AATTGATCCAGCCAACTA
CTACTACATGATTAAGCTACTTGCTCCCTCCGTATCAAAATATAAGATGTTTTTTGATACGAAGAGAGTATCAAAAA-AT
ATCCTATATTAATTTTGATACAAAGGGAGAAGTTGT------------------TAGTACG---------------TACA
TAAGTGACATGTACACTTGGCCAC----AGGATGGAAGTGGTGAAGCTGAGGAGCCCCTCGGGAATGGCCAAGGTGGCCG
GCGTCGGGCTCTGCCTCGCCGGGGTGCTCGTCATCGCCTTCTACGTGGGTCCGTCCCTGGACCCGGTGAACCATCACCGC
GCCTTTGCTGTCGCAAACGGAGAGGCTGGTGCGAAGAGGGGGACGTGGATCCTGGGCACGTTGCTCATGGTGCTCGTCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCCGCGCTGCTCAAGGAGTTCCCCCACAAGCTGCTCGTCACGGCGACGC
AGTGCGTCTTCAGCGCGGCGCAGTGCTTAGTCGTCGCGGCGGTCGCCGAGAGGGACTTCTCCAGGTGGCAGCTGGGGTTC
GACGTCACATTGGTCGCCGTCCTCTACACCGTAAGGCT---TCTCAATTCTCTGTCTTGATAGTG-----------CTGC
CAATGGATTATGGATGGATGCATGGAGTGGTGGATTGATTGATGTATGGTTCAAAAATTCAGGGGTTTGTGGTGACGGGA
GTGTCGTACTACCTGCAAGCATGGTGCGCCGACATGAGAGGGCCGGTGTTCCTCGCCGTGTGGAACCCGCTCTGCTTCGT
CTTCACCATTTTCTGTTCCTCCTTCTTCCTCGGGGAGATTGTTCACCTCGGCAGGTACGTGGCGACCATCGACGACTAAG
CT-----TTCAGCTGCACAACTGGTCTATCAGTCTATCCTTGCGAAACTCCACTTCATTTACTCTTCTTTTTCATTAATT
TTGGCAGTATCTTGGGTGGAATTCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGTAAAAGCAAGGAGAATCGGACT
GGGCCATGTGGCGAGCCGATTATGATGATCCATGGCGTGGGTGACGGGAAATCTGCAGATGAGGAGGAGAAGAATGCG--
-AGGAGCAAACAAGTTAACGGGGAGATGGAACACGATAAAGAAGCAACGATATTGCCTGCTGAACAAGTCTGATTTGATC
GACTAAAGGAAGCTCCTTCT-TCTC----ATGGGATGCATCCATTATTCGAGTAACT-----------------------
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>chr2D_793
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----------------TTCCTAGCC--TAAACAAGCCAAAGAAAATCAGATCGAGATGCTATGCTACTAC----TCCAGC
TCAGTGTAGCTTGC--ATTGGTGTGGCAGCA------------TAAGTAGCTG----------CAGAGACTCA-------
TCGCAGGATAGAGAGGCGACAATCG-ATTCACACGCTCTGACCACACTTTGATCTGATCTGTTCGGTACCTGACGGAGCC
GTGGTAGCTCAAGC------TCGCTGCCGGCATGGAGGTGGATGGCAAGAAGCCGTACGTCATCGCCGTGATCATACAGG
TCATCGCCACCGGCATGCTCGTCACCTCCAAGGCGGCGTACAACCAGGGGTTCAACACCTACGTCTTCGTCTTCTACCGC
CAGGCCGCCGCGTCTCTTCTCTTGCTGCCTCTCGCCATTGTCCTCGAAAGGTACTGCCTCAGAGCTAACTATCTAT--CT
GGTACTACT-----TGAG---CTATACTTCTAGCAAGGGAACCATGCATGCAAGTAAGGTCGATGATGAGTTGCAAACTG
ATTCCCAGGAAAAACATACGGTTAATCTCGTTCCGGTTGCTCATGAAGCTGTTCCTCTATGCCTTATTCGGGTAAGTAAG
CAACGCATGG--------AGTAAATTGCAAAAAATCATCACAATTGGCTCGAAGTTATCAATGCTTCAGGAAAAAGCCAT
CAGAAAACATGCATTTTGGTGGGTGTTTGATGACTTTTGCGCAATTATGGTGGTTTTTTGCAATTTACTCATCGATTGCG
GCACCTAATTAGCTGTT--TGTGTATACGCAACAAATAGGGGATGA------ATGATTGATCGATATTTT----------
----CAGGACTACATTTAGCTTGAACCTGTACAACGTGAGCCTCAAGTTAACATCTGCTACCGTGGGGTCTGCAACCAGC
AACTCCATGCCCGTGGTCACCTTCATCATAGCGTTACTGCTGAGGTACGAACTAG---------TTGATCCAGCCAACTA
CTATTATATGATTATACTACT------CTCTGTTTCATAATAAT--------------------------TAAACTA-AA
CCACGACAAGAATTATGGAATAGAGGGAGTACTAAAGTTAGTCAGTAGTAGTAGTAGTACG---------------TACC
T-AGTGACTTGTACACTTGGCCGC----AGGATGGAAGTGGTGAAGCTGAGGAGCCCCTCGGGCATAGCCAAGGTGGCCG
GCGTCGGGCTCTGCCTCGCCGGGGTGCTCGCCATCGCCTTCTACGTCGGTCCGTCCCTGGACCCGGTGAACCACCACCGC
GCCTTTGCTGTCGCAAACGGGGAGGCTGATGCGAAGAGGGGGACGTGGATCATGGGCACGTTGCTCATGGTGCTCGTCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCCGCGCTGCTCAAGGAGTTCCCCCACAAGCTGCTCGTCACGGCGACGC
AGTGCGCCTTCAGCGCGGGCCAGTGTTTCGTCGTCGCGGCGGTCGCCGAGAGGGACTTCTCCCGGTGGCAGCTGGGGTTC
GACGTCACATTGGTCGCCGTCCTCTACACCGTAAGGCT---TCTCAATTCTCTGTCTTGACAAT----------TCCTGC
CA-------ATGGATGGATGCATGGAGTGGTGGACTGATGTATGCATGGGTTG---AATTAGGGGTTTGTGGTGACGGGA
GTGTCGTACTACCTGCAAGCATGGTGCGCGGACATGAGAGGGCCGGTCTTCCTCGCCGTGTGGAACCCGCTCTGCTTCGT
CTTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATCGTTCACCTCGGCAGGTACGTGACGATCGA-----------
------CATCGACTGCACAACTGGTCTATCAGTCTATCCTTGCAAAACTCCACTTCATTTATTCTTCTTTTTCATTAATT
TTGGCAGTATCTTGGGTGGAATTCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGTAAAAGCAAGGAGAACCGGACT
GGGCCATGTGGTGAGCCGATTATGATGATCCATGGCGTGGGTGACGGGAAATCTGCAGATGAGGAGGAGAAGAATGCG--
-AGGAGCAAACAAGTTAACGGGGAGATGGAGCACGATAAAGAAGCAACGGTATCGCCTGCTGAACAAGTCTGATTTGATC
GATTAAAGGAGGCCCCATCT-TCTC----ATGGGATGCATCCATTATTCGAGTAATTGTGAATT----------------
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>chr2A_793
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----------------TTCCAAGCC--TAAACAAGCCAAAGAAAATCAGATCGAGATGCTA-----CTAC----TCCAGC
TCAGCGTAGCTTGC--ATTGGTGTGGCAGCATAGCTGCATAAGTAAGTAGCTG----------CAGAGACTCAAACATCA
TCACAGGACAGAGAGGCGACAATAG-ATT--CACGCTCTGACCACACTTTGATCTGATCTATTCGGTACCTGACAGAGCC
GTGGTAGCTCAAGC------TCGCTGCCGGCATGGAGGTGGATGGCAAGAAGCCGTACGTCATCGCCGTGATCATACAGG
TCATCGCCACCGGCATGCTCGTCACCTCCAAGGCGGCGTACAACCAGGGGTTCAACACCTACGTCTTCGTCTTCTACCGC
CAGGCCGCCGCGTCTCTTCTCTTGCTGCCTCTCGCCATTGTCCTCGAAAGGTACTGCCTCAGAGCTAGCTATCTAT--CT
GGTACTATT-----TGAG---ATATACTTCTAGCAACGGAACCATGCATGCAAGTAAGGTCGATGATGAGTTGCAAACTG
ATTCCCAGGAAAAACATGCGGTTAATGTCGTTCCGGTTGCTCATGAAGCTGTTCCTCTATGCCTTATTCGGGTAAGACGG
CAAGTAAGCAACGCATGAAGTAAATTGCAAAAAATCATCACAATTGGCTCAAAGTTATCAATGCTTCAGGAAAAAGCCAT
CGGAAAACATGCATTTTGGTGGGTGTTTGATGACTTTTGCGCAATTGTGGTGGTTTTTTGCAATTTACTCATCGATTGCG
GCACCTAATTAGCTGTT--TATGTATGTGCAACAAATAGGAGATGA------ATGACTGATAGATATTTT----------
----CAGGACTACATTTAGCTTGAACCTGTACAACGTGAGCCTCAAGTTAACATCTGCTACCGTGGGGTCTGCGACCAGC
AACTCCATGCCCGTGGTCACCTTCATCATAGCGCTACTGCTGAGGTAAGAACTAG---------TTGATCCGGCCAACTA
CTATTATATGATTATACTACT------CTCTGTTTCATAATAAT--------------------------TGAACTAGAA
CCAGGACAAGAATTATGGAATAGAGGGAGTACTAAAGTTAATCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACATACC
T-AGTGACTTGTACACTTGGCCGC----AGGATGGAAGTGGTGAAGCTGAGGAGCCCCTCGGGCATGGCGAAGGTGGCCG
GAGTCGTGCTCTGCCTCGCCGGGGTGCTCGCCATCGCCTTGTACGTGGGTCCGTCCCTGGACCCGGTGAACCACCACCGC
GCCTTTGCTGCCGCAAACGGGGAGGCTGATGCGAAGAGGGGGACGTGGATCATGGGCACGTTGCTCATGGTGCTCGTCAA
CGTGACGTGGTCCCTGTGGATCGTCCTGCAGGCCGCGCTGCTCAAGGAGTTCCCCCACAAGCTGCTCGTCACGGCCACGC
AGTGCGCCTTCAGCGCGGGCCAGTGCTTCGTCGTCGCGGCGGTCGCCGAGAGGGACTTCTCCCGGTGGCAGCTAGGGTTC
GACGTCACACTGGTCGCCGTCCTCTACACCGTAGGGCT---TCCCAATTATCTGTCTTGATAATG-----------CTGC
CA-------ATGGATGTATGCATGGAGTGGTGGACTTATGTATGCATGGTTCAAAAATTCAGGGGTTTGTGGTGACGGGA
GTGTCGTACTACCTGCAAGCATGGTGCGCGGACATGAGAGGGCCGGTCTTCCTCGCCGTGTGGAACCCGCTCTGCTTCGT
CTTCACCATTTTCTGCTCCTCCTTCTTCCTCGGAGAGATTGTTCACCTCGGCAGGTACGTGACGATTTGACATCGAAGAT
CT-----TTCAACTGCACAACTGGTCTATCAGTCTATCCTTGCAAAACTCCACTTCATTTATTCTTCTTTTTCATTAATT
TTGGCAGTATCTTGGGTGGAATTCTTCTCGTTGGAGGTCTGTACAGCGTGCTGTGGGGTAAAAGCAAAGAGATTCGGACT
GCGCCATGTGATGAGCCGATTATGAT---CCATGGCGTGGGGGACGATAAATCTGCGGATGAGGAGGAGAAGAATGTTAT
TAGGAGCAGAGAAGTTAATGGGGAGATGGAGCACGATAAAGAAGCAACCATATCGCCTGCTGAACAAGTCTAAATTCATC
GATTGAAGGAGGCTCCATCT-TCTC----ATGGGATGCATCCATTATTCGAGTAAC------------------------
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>chr1D_3084
GTTCTTCTCATTTTTATTGGTTTTCTTTTTTCTTTTATATTTTTGTTTATGTTTTTTATTTTTTCTTATGTTTGTTTTCG
TTTTTACTCTACATTCTCGTATGTATCAAAAACATTTTTTTAATAAGCTATCAACATTCTTGTTTACATGTTCAACATTG
TCCGAACGCTTATTCAACATTTTAATATTTATCTCAATATTTCTTAAATACTTGTTCAACATTTTTAATACTCGTTCAAC
ATTTTTCAAATACTTCTTCAACATTTTTAATAGTTATTCAACATTTTCAAAATACTTGTTCTACATTTTTTAAATACTCA
TTAAACATTTTATACTTATTCAAAATTTTTCAAATACTTGTTCAGCATTTTTAATAATTATTCAATATTTTCAAATACTC
GTTCAACATTTTTAATCCTTAGTGAACATTTTTCAAATACTTATTCAACATTTTTTCCGTTCCTTTC-------------
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------TTTTTGTTTGGTTTTATTATTTTTCTTTGGGTTTCCTTTTTTCGTTATTATAATTCGTTTTTCTCTTTGTTTAT
GATGGTTTTTTCATTCTACATCCTTTGTTTTCTTTTTTCT--TCTCCATTTTTTGTTTGGTTTTCTTTTTTCTTCTGTAT
TTTTTGTTTTTCTTTTTATTTTTTCTTATGTTTGTTTTCGTTTTCACTCTTCATTTTCGCATGTGTTAATAAAA-CATTT
TTTAATCAGCGATCAACATTTTTTGTTTACACA-----------------------------------------------
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----------------------------------------------------------TTCAACATTGTCCGAACGCTTA
TTCAACATTTTTTAAATACTTGTTCAACGTTTTAATACTTATTTCAACATTTTTTAAATACTTGTTTAACATTTTTCAAA
CACCCGTTCAACATTTTTCAATACCCGCTCAACATTTTACAAATACTTGTTCAACATTTTTAATACTTATTCAAAAAAAT
TCAAATACTTGTTCAACATTTTTCAAATAATCATTAAACA----------------------------------------
-TTTTTAATACTTATTCAACAGTTTTTAAATAGTTGTTCAATG-TTTTCAAATATTCGTTCAACATTTTTAATACTTATT
TAACATTT---------------------------------------------------
>SNPs
S-S-SS-SSSSSSSS-SSS---SSSS-SSSSSSSS--SSSSS-SSS-S-SSSSSSSSS---SSSSS-SSS-SSSSSS-SS
SS---S-SSSSSSSSSSS---SSSSSSSS-SSS-SSS--SSS-SSS-SSSSSS-S--SS-SSSSSSSS-SSSSS-SSSSS
SS---------------------------S-----------SSSSS--SSSS-S------S-------------------
-----------S-------------------------S--S---------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------S----S---------S---S-S-------------SSSSSS----S-SS--S---
-----SS-S-------------SSSSS-----------------S-----------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------S----S-----S----------------SS------------------------------
----------------------S----------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------S--S----------------------------------------S----S----
---------S-S----S-----------S----------S---S-S----------------------------------
------------------S--S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------S--------SSSSSSS--S--------------------S----
---S---------------------------------------------------------------S------------
---------------------------------------------------------S-SSS---S--S-----S-----
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---S----------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
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--------------------------------------------------------------------------------
------------S-----------------------------------------------S---------------S---
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S------S----------------------------
-------------------------SSSS------------------------------------------------SS-
-----------S------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--S--------------------------------------------------------------
----S----------S---------------------S--------S-----S---------------S-----S-----
------------------S---------------------------S--------------S------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------------------------S---------S-----
------------------------S-S----SS-----------------------------------------------
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--------------------------------------------------------------------------S-----
----------------------------------S----------------------------S-------S--------
S------------S------------S-------------------------S---------------------------
--------S---SS--------------------------S-----------------S
>forward_1143
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---TGGGTTCCTGACAGAGCTCA---------------------------------------------------------
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>reverse_2447
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----------------------------------------------TGAGAGGGACTTCTCCAGGT--------------
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>forward_1372
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------------------------------------------------------------------------CTCTAGCT
GGTTCTGCTCGG--------------------------------------------------------------------
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>reverse_2901
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--------------------GTCCTTCTCGTTGGAGGTCTG---------------------------------------
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>forward_1828
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-------------------------------------------------GACATCTGCAACCGTGGGA------------
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>reverse_3872
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-------------------------------TGTTCAACATTGTCCGAACGC----------------------------
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-----------------------------------------------------------
