>input_sequence_47143
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----------------------------------------ATGGCTCAACCATACATGCCGGTGGCAAGTGCGGAAGATC
CGGAAATCCAAGAAAGTCCCGGCAATGGCAGCTCGTCCATCTGGATCCAGGAGGAGGAGGAGAAAATCCGCAAGCAAGCT
GAGCAAGTAACCCTGAGCATCCCTCCCCACTTCCCAAGGCTCGACTCTATCGGTGGTAATAACTTAGACTTCGATTACCC
GTCAATTTTCAAGCTTCGCCGCCGCGCCGCCGTTGGAGTAGCGCTGGCGTCCATGCCCACGCTTCCGCAGGCGGCCGCCT
CGCCGGCCCTGGATCACCCCGAGCCCGCAACCAGCAGCATCATGGTCGCCGCTGTCGGGCCGTACCACCGCCCGTCGTCA
GGCTCACTCATCACAGATGCCAAGAAGTGCGCCATCGTCAAGTTTCTTGCTAGCCAGCAAGGGTCCGGCCTCAACACCGC
CGACTTCCTCCGTTGGGCGAAGGAGAATGATGCCCGAGTTCAGAGCTGCTACGAGGCTGGCTCGTTTACCGTGAGCTCTG
AGCCATCCAGAGAAGAAGAAACCATGAGCTCCAAGGATCTCCCCAGGATGCTTCTGCTCGACGGTTGCCTGCTCCTCTTC
GCCGTCTTCCTGCTCACGTCGAGCGTGCACGCGACG------CCGGCGCTGCCGGCCCATGATGACGCCGAGCGTGAGAG
GCAGTTCAACTACTTGTCCGCGGACATGTGCCGGAACATGAAACAGACCAGGCTGGACCTGCTGACGCTGAGCAACCAGA
TCCCCTTCTTCGTGCTGGCCGAGCTTCACGGACGGTTGAAAGGCACCTTGTTCAATGGAATCGAGCGCAGCATAGAAGAG
CTGGCTCTCTCCTGCTTCGACGACATCCACCCGCCGCTCAGTGGTGTCATCAAACAAGCCAAGGCAGGAGAAACCATCAC
GTTCCCAAAGACAGTTCATCACCTGCTGCACCTTTTCCACTGGTCGCGGGTCCCCGAGGGCAAGCACATGCTGCTCAACG
ATTCTCCCTGCCTGCACGCCGAGCCGGAGTCGCACCTCCCCTGCGCGACCTGGTTCGAGGAGTGGCGGACGAGTTTCAGC
AAGCAGGCCGCACCGG---GCGGCAGCTCGTTACACATCGTCTTCAAGAGGGAGATGATGGACATGCGAGGGGTGATGCA
CGTCCCTGCCCAGCACATCCACGGCTACAGCGAGCCCGTCTTCCGCAGCCTCATCGCGTTCGAGCAGAGGCACCACCAGT
GTGGCCTCGGCGTCACCGCCTACTCCATCTGCATGGCTCGGCTGCTGCAGACCGAGGCCGACGCCAAGCTGCTGAGGGAG
CGCGGGATCCTGGCGCACACGCACCAGACCGACAAGGAGATCGTCGACCTCTTCACTGGACTCGCGGATGAGTACAGCAA
CACATTTTACTCCAAAGACCTGCTTCGCCTCTGCGAGGACGTGTCGGCGCATCATAAGAGCACGCCCGCCAAGGCCATCA
AGTGGGTGAGGTTGCAGTGCTTCCCCAAGCAGTCTGTCACCTTCTTTGTCATCTTTGGGGCTTTGATCTCCTTCGCCACC
GTCATCAACGCGGGCTACTCGGTCTATAGGTTCTATCACCCACTCCCGGTCAAGTAA-----------------------
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>chr2B_1_TraesCS2B01G082600
CGGCACAGCTGCGGCCAGGGCAGATGGACAGCGCCGCGGATGTGTGACGTGTCAGCTATGCCGACGGCTGCCGTCGGCAT
ATGTCCTGGTCGGTGCGCTCTGGATCGGTGACATGTCACCCGTATCTATGCCGACGGCCACCCGTCATGGCCGTCGGCAT
AGATTTGACGTCGTTAGCCGGCCGTGATGAGTGTTGTCGGCGGGCCCGCATCTATGCCGACGGCCTGTATATGCCGACGG
CAGCTGTAGGCGTAGCCTGGGATAAGCCGACGGCCGCTATGTGCCGACGGCTGCTGTCGGCGTAGACGGGGATAGCCCGA
CGGCCATTGTACGCCGACGGCCAGGACCTAGCTGTCGGCATATCTCGGTTTAGGCCGACGGTGGCCGTCGGCATACATTT
GGCTGTCGGCTTAGAGCCCTGTTCCGGTAGTGTAGGACGCTTAGTGGAGCGCGGTAGTTTTTTTTAGGGAGGCGCCGTAG
TTGTGAATGGGCAAGGTTGACCTGTTCTTACGTGACTAACCAACCGATTAGAATGAGGCGAGCCCCATGTGGATTTGGCG
GGTTTCTTGGATCCATCGTGCGCCATCGTGGCCCTGAGACGGGCCTCCAGTTTTCTACGTGCGCAATCGTGGCCTGAGAT
GGGCCTCATTATCGTGGCGAGAGATGAACCTCAAGTTTTGAATATTGACATTGGTAGACTTGTTCCACGTAAAAAAGAAA
AGAAAATGGCAGACTTGTTCCACGCGACCGATCATTGTGGAGTATACGGAGTACAATACAGTAGCTCGTCGTGGTATACG
CGTTGCCTTCTGCTTAAAGGGAAAAAAAGCGTGTTGCAAATTTGGTTGGATTCTTTCGGTCGTATTTACCGCGTAATCGC
TACACCATAAAACCACTCTCCTCCCTTTCGCATAAACTCCTACTATAGATAACATAGTAGTTCCCTAGCTGATCATCTAT
ACATCAAAAACTCTCTTCCTCTTGCTAGCTACCGCGCGCCATGGCTCAACCATACATGCCGGTGGCAAGTGCGGAAGATC
CGGAAATCCAAGAAAGTCCCGGCAATGGCAGCTCGTCCATCTGGATCCAGGAGGAGGAGGAGAAAATCCGCAAGCAAGCT
GAGCAAGTAACCCTGAGCATCCCTCCCCACTTCCCAAGGCTCGACTCTATCGGTGGTAATAACTTAGACTTCGATTACCC
GTCAATTTTCAAGCTTCGCCGCCGCGCCGCCGTTGGAGTAGCGCTGGCGTCCATGCCCACGCTTCCGCAGGCGGCCGCCT
CGCCGGCCCTGGATCACCCCGAGCCCGCAACCAGCAGCATCATGGTCGCCGCTGTCGGGCCGTACCACCGCCCGTCGTCA
GGCTCACTCATCACAGATGCCAAGAAGTGCGCCATCGTCAAGTTTCTTGCTAGCCAGCAAGGGTCCGGCCTCAACACCGC
CGACTTCCTCCGTTGGGCGAAGGAGAATGATGCCCGAGTTCAGAGCTGCTACGAGGCTGGCTCGTTTACCGTGAGCTCTG
AGCCATCCAGAGAAGAAGAAACCATGAGCTCCAAGGATCTCCCCAGGATGCTTCTGCTCGACGGTTGCCTGCTCCTCTTC
GCCGTCTTCCTGCTCACGTCGAGCGTGCACGCGACG------CCGGCGCTGCCGGCCCATGATGACGCCGAGCGTGAGAG
GCAGTTCAACTACTTGTCCGCGGACATGTGCCGGAACATGAAACAGACCAGGCTGGACCTGCTGACGCTGAGCAACCAGA
TCCCCTTCTTCGTGCTGGCCGAGCTTCACGGACGGTTGAAAGGCACCTTGTTCAATGGAATCGAGCGCAGCATAGAAGAG
CTGGCTCTCTCCTGCTTCGACGACATCCACCCGCCGCTCAGTGGTGTCATCAAACAAGCCAAGGCAGGAGAAACCATCAC
GTTCCCAAAGACAGTTCATCACCTGCTGCACCTTTTCCACTGGTCGCGGGTCCCCGAGGGCAAGCACATGCTGCTCAACG
ATTCTCCCTGCCTGCACGCCGAGCCGGAGTCGCACCTCCCCTGCGCGACCTGGTTCGAGGAGTGGCGGACGAGTTTCAGC
AAGCAGGCCGCACCGG---GCGGCAGCTCGTTACACATCGTCTTCAAGAGGGAGATGATGGACATGCGAGGGGTGATGCA
CGTCCCTGCCCAGCACATCCACGGCTACAGCGAGCCCGTCTTCCGCAGCCTCATCGCGTTCGAGCAGAGGCACCACCAGT
GTGGCCTCGGCGTCACCGCCTACTCCATCTGCATGGCTCGGCTGCTGCAGACCGAGGCCGACGCCAAGCTGCTGAGGGAG
CGCGGGATCCTGGCGCACACGCACCAGACCGACAAGGAGATCGTCGACCTCTTCACTGGACTCGCGGATGAGTACAGCAA
CACATTTTACTCCAAAGACCTGCTTCGCCTCTGCGAGGACGTGTCGGCGCATCATAAGAGCACGCCCGCCAAGGCCATCA
AGTGGGTGAGGTTGCAGTGCTTCCCCAAGCAGTCTGTCACCTTCTTTGTCATCTTTGGGGCTTTGATCTCCTTCGCCACC
GTCATCAACGCGGGCTACTCGGTCTATAGGTTCTATCACCCACTCCCGGTCAAGTAATAGTGGACAGAAATCTGGAAACA
CCCCAAACGTAGTTTTTTTTTTAATTCAGTTTAGGTCAAATGAAATGTGGTTGGTTTCTAGACAGGCCACTTTGTGATGT
AAAAGACTGTATCGATGCTTTCCTCCTGTAATACAAGATACACAATGCTTGTTGTTATATGAATATATTTAAAATAATAA
AGTAGTATATATAGTACCACATGGTAGTATATGAGACATATGGGGTAACTACCACCGGGTGGTAGGATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAGTAAGATGTGTT
TCTCTGAATTTTGGTCTGTTCACCATCTAGAATTATTTTCTTTCTTCCATCGTACATATCTGACATTGTACTATTTTTTT
GCCCGTCCACACATGCATAATTTTTTGGGTTGAGCCTCCAAACCGTGCAGTCAACGGCCTGCTCCACATATTTTTCTTTC
CTTTGATTGGACAGCTGGAGAAAAATACACAAAACAAATTAGAATTTTATTTTAACCTAAGCTCCGAGTAGGCCAACTGC
AATTACATAACGCATGC
>chr1B_1541
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--------------------ACCATGGGGTCCGAGGAGCTCGCGGAGATGCTTCTGCTCGACGGTTGCCTGCTTCTCTTC
GCCGTCTTCCTTCTCAGGTCGAGCGTGCGCGAGGACCAGCGTCCAGCGCAGCTGACCCGTGATGCCAAGCATAGGAAGGT
---GTTCGTGTACTTGTCAGCTGACATGTGCCTGCACATGAAACAGACCAGGCTGGACCTGCTGATGCTGGGAAACCAGA
TCCCCTTCTTTGTGCTCACCGAGCTTCACAGGCTACTGAGAAATACCTTCTTCCATGGAATCCAGTACAGCATAGAAGAA
CTGGCTCTCTCCTGCTTCGACGACATCCACCCAACCCGCAGTGGATTCATCAAACAAGACGAAGCAGCAGGAACCACACT
------------AGTTCATCACCTCCTGCACCTTTTCCACTGCTCCCGGGTGCCCAAAGGTAACCACGG---GCTCGACA
ATACTTCGTTCCTGCGCCGGGAGCCAGACTCGCACCTCCCCTGCGCGACCTGGCTCGAGGAGTCCCACACCAGTTTCAGC
AAGCAGGCCGCTCCAGGTAGCAGCAGCTCGTTGCACATCGTCTTCCAGAGAAAGATGTTTCGCGTGGGAGGGGTGATGCA
CGTCCCTGCCCAGCACATCCACGGCTACAGCGAGTCTGTCTTCCGCAACCTCATCGCGTTCGAGCAGAGCCATCAGAGGT
GCGGCCTCGGCGTCACCGCCTACTCCATGTGCATGGCTCGGCTGCTGCAGACCGAGGACGACGCCAAACTGCTGAGGAAG
AGCGGCATCCTAGCGCACACTCACAAGACCGACAAGGAGATCGTCGACTTGTTCAGTGGGCTCGCAGATGAGTACAGGAA
CACGTTTTATTCCAAAGATCTTCTTGATCTCTGCGAGGACGTGGCAGCATATCATCACAGCGCAGCCGCCAAGGCCGTCA
AATGGGTCGGGCAGCAGTGCTTCCCAAGGCAATCTGTCACCTTCTTTGTCATCTTTGGCGCTTTGATCTCCGTTGCCACG
CTCGTCAACACCGGGTACTCCGTCTATAGGTTCTATCATCCA--------------------------------------
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>chr1D_1541
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--------------------ACCATGGGGTCCGAGGAGCTCGCGGAGATGCTTCTGCTCGACGGTTGCCTGCTTCTCTTC
GCCGTCTTCCTTCTCAGGTCGAGCGTGCGCGAGGACCAGCGTCCGGCGCAGCTGACCCGTGATGCCAAGCACAGGAAGGT
---GTTCGTGTACTTGTCAGCGGACATGTGCCTGCACATGAAACAGACCAGGCTGGACCTACTGATGCTGGGAAACCAGA
TCCCCTTCTTTGTGCTCACCGAGCTTCACAGGCTATTGAGAAATACCTTCTTCCATGGAATCCAGTACAGCATAGAAGAA
CTGGCTCTCTCCTGTTTCGACGACATCCACCCAACCCGCAGTGGATTCATCAAACAAGACGAAGCAGCAGGAACCACGGT
------------AGTTCATCACCTCCTGCACCTTTTCCACTGCTCCCGAGTGCCCAAAGGTAACCACGG---GCTCGACG
ATACTTCGTTCCTGCGCCGGGAGCCAGACTCGCACCTCCCCTGCGCGACCTGGCTCGAGGAGTCCCACACCAGTTTCAGC
AAGCAGGCCGCTCCAGGTAGCAGCAGCTCGTTGCACATCGTCTTCCAGAGAAAGATGTTTCGGGTGGGAGGAGTGATGCA
CGTCCCTGCCCAGCACATCCACGGCTACAGCGAGTCTGTCTTCCGCAACCTCATCGCGTTCGAGCAGAGCCATCAGAGGT
GCGGCCTCGGCGTCACCGCCTACTCCATGTGCATGGCTCGGCTGCTGCAGACCGAGGACGACGCCAAACTGCTGAGGAAG
AGCGGCATCCTAGCGCACACTCACAAGACCGACAAGGAGATCGTCGACTTGTTCAGTGAGCTCTCAGATGAGTACAGGAA
CACGTTTTATTCCAGAGATCTTCTTGATCTCTGCAAGGACGTGGCAGCATATCATCACAGCACAGCCGCTAAGGCCGTCA
AATGGGTCGGGCAGCAGTGCTTCCCAAGGCAATCTGTCACCTTCTTCGTCATCTTTGGCGCTTTGATCTCCGTTGCCACA
CTCGTCAACACCGGGTACTCCGTCTATAGGTTCTATCA------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------S-S---S----S---S-SSS---------------------------S------
-----------S----S-----------S--S-SSS-------------S--S-S---S-----S-SSSS-SS-SS--SS
SSS----SSS--------S-------------S-S------------------------------S----S-S-------
----------S-----SS-----------S-S-SS----S-SSS-----S---S--------S--SS------------S
--------------------------------SS-S-S------SS------------S-S-S----S--S-----SSSS
SSSSSSSSSSSS------------S-----------------S--S-----S---S-S--S--S---SSSSS----S---
--S--S-S-S-----S-SSS-----S--S------------------------S---------SS-SS--S---------
-----------S--S------S----------S------------S----SS-----S-SSS-S--S-------------
----------------------------------S-S----------S---------------------S--S--SSS--
-S--------------------------S----------------------------S---------S---------S--
S----S-----S--------S---S-----------------------S-S----S---S-----S-----------S--
---S-----S--------S--S---SSS---------------S-S--SS-----S-S-----SS-----------S---
-S-----SS--SS------------S-S---S--------------------------S------------S-S-----S
S--S-----S-S--S-----S-----------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_405
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-----------------------------------------------------------------CGTCGGCATACATTT
GGCTG---------------------------------------------------------------------------
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>reverse_1553
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--------------------------------AAGGATCTCCCCAGGATGCT----------------------------
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>forward_408
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--------------------------------------------------------------------CGGCATACATTT
GGCTGTCG------------------------------------------------------------------------
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>reverse_2376
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-------------------------------------------------------CTGGACTCGCGGATGAGTAC-----
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>forward_662
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--GCCTCATTATCGTGGCGAGA----------------------------------------------------------
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>reverse_2631
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----------------------------------------------------------------------TCTGGAAACA
CCCCAAACGT----------------------------------------------------------------------
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