>input_sequence_20144
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----------------------------------------------------------------------CCAAACCCTC
GGCCGTTCCATTCCATAACCCCGAGGAAGCG-----------CCCCTCGCCCCGCTTCCCCTCCCC-GCTCCCCTCCGCG
GCGCGGCCACCGTCTCCGCCAGAACCCTAGCGAAATCACGGAGAAGGCGCGGAGGAAGCAGCCGGCCTCCCTCGCCCGGG
AAGATGACGGAGAACCACCGCTTCTGGGGTGCGTACCCTCTCCCCGAATCCCCCAATTTC----------GCCCCCGATC
TGATCGCGCGGTCCAGTTCCGGTGCCCCCGTGCTGCTCGTGCATTTCGCCGCATCTGATCGGCGGGGGGTAGTTCCGGCG
GTGGCGGGTTCCGTCCAGCAGTCAGGGAATCTACGCGGCCTGTTCCTCCCTAGGGTTCCTCGCTTCTGACCGATCTCTGT
TTGTTTAAAGTAGCGCATTCATGC----CGGGGCCCCTGCAATCCGTGATTCGCATTTCCCTTGTTTCGTTGGCTCACGA
TGGCATACCGTGTCCTGATCTAGGGAGAGTGGCGCGGTTATCCTGTCTTGATCTGGAGAGCGCATTGTGGTTTCCTGCTT
GTTGTTCCTGGGTCTGGGGTTGGTTTGTCTGAACAATAGTCTCATGGATATCTGGTTGGATGGTATTAGTTCCTTCTGTA
CTTTCAGCAG------------TCATAACCTACATAATAATGTGTTGTCAGCTTCGGTATATGTTCTGCTGTGACCTGCA
TTTCTTCTGAAGATGAGCATGCTCTGGTAATTGTTCGTTTAGCGCCGCCAATGCATTGTTTCTGTTCTGTATGAGCAAAT
GTCCCCATTCTGTTTGCCTTAATAATGTGTGGTGCATATTTCTCTGGGGCGCTTCAGAAAGCAACAGATATTTGTGTTTG
CCAATTTCCCATG--TTTGTTAAATGACTAATGGCTACTATGCATGAATGCTAACA-T-TTAGGAGTTGTCGTCAAACCT
GGAGAGACAGTGAAGTGTGACCCAGGAGATTCACATTATCACATTTCGACGGTGTGTTTTGTACACTTCATTTATAAGTG
CCCTTCTAGCTTATTTGTAGGTGGATCAAGTTTGCTTACTCTTCAGGTGTTTACTTTTCTCGTTTACTACAGATAGCATT
GGAGACTGGCAAGGCAGAAGAGAATGTGCAAGTTTTCGTGAAAATTGACGATACAAGGATTATGCTTGCCACACTTTCAG
TTGATAATCATCCTCATGTTTTAGCTGATCTGGTGTTCAAAAGGGAGTTTGAGCTGTTGCACTCCTCAATGACCAGCAAC
ATCAGCTTTATGGGCTACAAATTTGATATTATCAAAAGATATCCTTCCACATTTCATTCTTCAATGTTTGCTAAGTAGCT
TGAATATGCATTTGTGTTCTTTAACTGTTTTCCTGTCTCTAGTCACATCTCACTCATGTACTAAACAAGGTAAATATTGT
TTTTCATTTTAGTATTGGGCATCTATGATGTTTTCTTTGTACAGTTGATAACATGGCATAACTTCCATATACCTGATGTT
TCAGGTGCTGATTCTGATGAGGAGGTTCCATTGGCTATTCCACTAGACTTCAATACAGACGGTATATTCTTTTCCTATGC
ATAACAGTTGTTGTTTAAGAGTTCAGAATGATGTATCTGCTTCATGGATTTGCATGTCTAGTAAGTTTACGTTGTGGTTT
TCCCTCTTTGCCTTTGTTCTAGAATGAAAACATGCAA-ATTGACCCTTGGCATGTTTGACATTGTTTACTTTCAGGTTAC
AAAAACAATGAAGCTACACATGGTGCCAATAATCTT---ATTGTACCAAGGCCTGCTGATGCTCCATCCCCTATACCAAA
GGCTAAAGTTGAAGGAACAAATAGTCCTGGAAAGCGAAAGGGAGATGATAAGGTTTGTATCTTTGTTAAGAATAATCAAC
CGCGGGTTATGATGGAACTGTTGTTTCCTGTATGATTTATTTTCTTGCTCTTGTTGTTCTGGATCGTGCAGGGAGAATGT
TGGTAAATAAGTTCAGTGAACATTCTAACATGTAACTAAAAATAGTTAACATGGAGTATGCATCCATTTTGACAGTTTTT
CTTTAAGTATATGATCAGTGTTTCCATGTGTGCACACAATACTTACTTTTATGCAACCTACCACATTCAATTCTAGTTGG
ATGACAGATCCACAAATAGTGGCTGTAGGTTGTAGCAGCCCAATCATTGTCCTAGGGAGTATATACTTTGTTGGTTCTGA
AACCTGACATGGATTTGGTAGGTGTGAAAACTAA-GTTCCCTGATGCTGAATACGTTTGCAGGATAAGACTGGTACGCAG
AATTCCAGTGATGGCGTTGATAATGAGAGTTCTGATCAAGATGTGGATTATCCTCGAAAGGTGCGAGATTGCTCAAAGAG
AGCTGTTATTTTGATGCCTTCTCATTTCATAAAATCCTGAAACTCTTTCTGTTTTGACATGTTCAGAAAACAAAGGATGA
TTATAATCCAATGGAAACACCTCTGAATACACCCCAGGGGAAGAGGGCAAAGATAGCAACACCAACTACGGGCAACAGAA
CTGGTGTGAAGTGATCTTTATTTTATA-----------------------------------------------------
----------------------------------TTTAATCTGCTGAACTTGCATTGTTCTT---AAGGCACAGGAATCT
CACTGCTTGATGAACAACTTGCGTGCAGGCTATGTCCATGTTGCGACCCCTCATCCAGCAGCAAAACAGGCTCGTAAGTC
AGGTGACCATGTCCACGTTGCGACC-------------------------------------------------------
--CCTCATCCGGCAGCAAAACAGGCTGGTAAGTCAGGTGACCATGTCCATGTCGCGACCCCTCATCCGGCAGCAAAACAG
GCTCATAAGTCAGGTGACCAT---------------------------------------------------------GT
CCACGTCGCGACCCCTCATCCG---------------------------------------------------------G
CAGCAAAACAGGCTCGTAAGTCAGGTGACCACGTCCACGTCGCGACCCCTCATCCAGCAGCAAAACATGCAAGGAAGACA
CCTGAAAACAACGATGACAAGTCTAAGCAATCCGCTGGTCATGTCTGCAACTCATGCAACAGGCAAGATCTTGTTCCTTC
TCTTTGAATCTGATCCCGTCTGGAGCATATGCTGTTGTATCCTCGCTG--------ACACACTTCCCTTCTTCAGGACTT
TCAGCTCCTTGAAGGGTCTTGGAGATCATTCCAGGGCGAAGCATGGCGACGCCAAGTAAGGTGGCCTGAGATATGCCGTG
GACAGGCCCGAGCGAGGTGTTAGCTTAGGGGTGATGCTGGTGAACTGAATTTGGGTATCCGAGGCGGAGATGATGTGTAA
AGAGGTCGCTTCTTTGGGTATATCGCTCCCCACGCACCATCAGGATGTTCTCTC-TCTTTGACACCGTTATAGACCGGTG
TTGGTGTGCTGTGCTATGCTACGAAATGCTGTTGATTATGCCGGGATCCTGGAATCACGTGGTTAATTATTATGGTTGGG
TGCTGCTGTCTTGTTGATAAACATTCTTTTGTGCCGTATGTGTTTTTGTGGTGATTCATCATGCTTGTAAG---------
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>chr3D_1_TraesCS3D01G410300
CCGGGTAAGTCTGAATGATAGAGTTTAGCCTAGCCACTTAGGGTTAGGGAAGGAAAACTAAAGGAATAGTGATGT-TTGA
TGTCACTAAGAGCATCTCCAACGCCGACCCTCAAAACCGCCCGCATATATGCGAACCACGCGGTCCGGACCCCAAAAGCC
ATCCAACACGGGCTTGTATTAATCCGCCGAGCGGTACGGACCACGTTTTTCCCGAACCAAACG-----------------
-GGGGGAGGGGCTTTGCGGGAGTCCGCTCATCCGTCTGGCCAACCAAAGGGCACCGCATGCCTCTCTCTCAGTCCGAATG
GCGGAAAGCCGTTGCTAATTTTGTTTGTCTGCCGAAAGATGAAGGCAAACATGGCGGAATGTCAAGTTCCGCCAAACATG
TGTGATATGCACTTTCTGCCATTCACATCTCACATCATGTTTGGCGGAAGCACTTGTTTCATTTTTTTTAGAAACACCTT
TTATTTTCTTCAAGTGATTTAGACTAGCATGTTGGTTTCGCCCAAAAAACAGTACTAGCATGTTGGCCGAAAGTGAAAGG
CATGACTATTCAGGAAGGCGGAAGATTCACATTTCATGCTTATTAGTACGTACACTCCGGTTTGTTCAAATTTGTTTTAA
AACAGATGCGGATAGGGTTGGATGACCGACTCCCGTATTAGTATCCGGACATCAGTTGAAACCGATTTTCGAACAAATAC
GCTATTTGTTTACGGGT-----------ATGCCCTAGTGGTACATCTTCAACGTGACATAGCAAACTGCTTGAAATGAGT
CGGTGAGAAAATCCGAGATGGAAGTTCACTATAAAGATTTTTCTAATAAATAATCGACGAATAGGTTGGAAAAACTCCCC
TAAAAAAGAGAATAGGTTGGAAAAATACCTTCAATAGGAGTACGAAGCTCGGCCAAGGCGATCGAAACTCAAAAAAAAAA
AAATGGAGAAAACACGCCTGGACCCACTGTCATAGGCCGCGAACACGACGGGCCGCGGGGACGAAACCAACCAAACCCTC
GGCCGTTCCATTCCATAACCCCGAGGAAGCG-----------CCCCTCGCCCCGCTTCCCCTCCCC-GCTCCCCTCCGCG
GCGCGGCCACCGTCTCCGCCAGAACCCTAGCGAAATCACGGAGAAGGCGCGGAGGAAGCAGCCGGCCTCCCTCGCCCGGG
AAGATGACGGAGAACCACCGCTTCTGGGGTGCGTACCCTCTCCCCGAATCCCCCAATTTC----------GCCCCCGATC
TGATCGCGCGGTCCAGTTCCGGTGCCCCCGTGCTGCTCGTGCATTTCGCCGCATCTGATCGGCGGGGGGTAGTTCCGGCG
GTGGCGGGTTCCGTCCAGCAGTCAGGGAATCTACGCGGCCTGTTCCTCCCTAGGGTTCCTCGCTTCTGACCGATCTCTGT
TTGTTTAAAGTAGCGCATTCATGC----CGGGGCCCCTGCAATCCGTGATTCGCATTTCCCTTGTTTCGTTGGCTCACGA
TGGCATACCGTGTCCTGATCTAGGGAGAGTGGCGCGGTTATCCTGTCTTGATCTGGAGAGCGCATTGTGGTTTCCTGCTT
GTTGTTCCTGGGTCTGGGGTTGGTTTGTCTGAACAATAGTCTCATGGATATCTGGTTGGATGGTATTAGTTCCTTCTGTA
CTTTCAGCAG------------TCATAACCTACATAATAATGTGTTGTCAGCTTCGGTATATGTTCTGCTGTGACCTGCA
TTTCTTCTGAAGATGAGCATGCTCTGGTAATTGTTCGTTTAGCGCCGCCAATGCATTGTTTCTGTTCTGTATGAGCAAAT
GTCCCCATTCTGTTTGCCTTAATAATGTGTGGTGCATATTTCTCTGGGGCGCTTCAGAAAGCAACAGATATTTGTGTTTG
CCAATTTCCCATG--TTTGTTAAATGACTAATGGCTACTATGCATGAATGCTAACA-T-TTAGGAGTTGTCGTCAAACCT
GGAGAGACAGTGAAGTGTGACCCAGGAGATTCACATTATCACATTTCGACGGTGTGTTTTGTACACTTCATTTATAAGTG
CCCTTCTAGCTTATTTGTAGGTGGATCAAGTTTGCTTACTCTTCAGGTGTTTACTTTTCTCGTTTACTACAGATAGCATT
GGAGACTGGCAAGGCAGAAGAGAATGTGCAAGTTTTCGTGAAAATTGACGATACAAGGATTATGCTTGCCACACTTTCAG
TTGATAATCATCCTCATGTTTTAGCTGATCTGGTGTTCAAAAGGGAGTTTGAGCTGTTGCACTCCTCAATGACCAGCAAC
ATCAGCTTTATGGGCTACAAATTTGATATTATCAAAAGATATCCTTCCACATTTCATTCTTCAATGTTTGCTAAGTAGCT
TGAATATGCATTTGTGTTCTTTAACTGTTTTCCTGTCTCTAGTCACATCTCACTCATGTACTAAACAAGGTAAATATTGT
TTTTCATTTTAGTATTGGGCATCTATGATGTTTTCTTTGTACAGTTGATAACATGGCATAACTTCCATATACCTGATGTT
TCAGGTGCTGATTCTGATGAGGAGGTTCCATTGGCTATTCCACTAGACTTCAATACAGACGGTATATTCTTTTCCTATGC
ATAACAGTTGTTGTTTAAGAGTTCAGAATGATGTATCTGCTTCATGGATTTGCATGTCTAGTAAGTTTACGTTGTGGTTT
TCCCTCTTTGCCTTTGTTCTAGAATGAAAACATGCAA-ATTGACCCTTGGCATGTTTGACATTGTTTACTTTCAGGTTAC
AAAAACAATGAAGCTACACATGGTGCCAATAATCTT---ATTGTACCAAGGCCTGCTGATGCTCCATCCCCTATACCAAA
GGCTAAAGTTGAAGGAACAAATAGTCCTGGAAAGCGAAAGGGAGATGATAAGGTTTGTATCTTTGTTAAGAATAATCAAC
CGCGGGTTATGATGGAACTGTTGTTTCCTGTATGATTTATTTTCTTGCTCTTGTTGTTCTGGATCGTGCAGGGAGAATGT
TGGTAAATAAGTTCAGTGAACATTCTAACATGTAACTAAAAATAGTTAACATGGAGTATGCATCCATTTTGACAGTTTTT
CTTTAAGTATATGATCAGTGTTTCCATGTGTGCACACAATACTTACTTTTATGCAACCTACCACATTCAATTCTAGTTGG
ATGACAGATCCACAAATAGTGGCTGTAGGTTGTAGCAGCCCAATCATTGTCCTAGGGAGTATATACTTTGTTGGTTCTGA
AACCTGACATGGATTTGGTAGGTGTGAAAACTAA-GTTCCCTGATGCTGAATACGTTTGCAGGATAAGACTGGTACGCAG
AATTCCAGTGATGGCGTTGATAATGAGAGTTCTGATCAAGATGTGGATTATCCTCGAAAGGTGCGAGATTGCTCAAAGAG
AGCTGTTATTTTGATGCCTTCTCATTTCATAAAATCCTGAAACTCTTTCTGTTTTGACATGTTCAGAAAACAAAGGATGA
TTATAATCCAATGGAAACACCTCTGAATACACCCCAGGGGAAGAGGGCAAAGATAGCAACACCAACTACGGGCAACAGAA
CTGGTGTGAAGTGATCTTTATTTTATA-----------------------------------------------------
----------------------------------TTTAATCTGCTGAACTTGCATTGTTCTT---AAGGCACAGGAATCT
CACTGCTTGATGAACAACTTGCGTGCAGGCTATGTCCATGTTGCGACCCCTCATCCAGCAGCAAAACAGGCTCGTAAGTC
AGGTGACCATGTCCACGTTGCGACC-------------------------------------------------------
--CCTCATCCGGCAGCAAAACAGGCTGGTAAGTCAGGTGACCATGTCCATGTCGCGACCCCTCATCCGGCAGCAAAACAG
GCTCATAAGTCAGGTGACCAT---------------------------------------------------------GT
CCACGTCGCGACCCCTCATCCG---------------------------------------------------------G
CAGCAAAACAGGCTCGTAAGTCAGGTGACCACGTCCACGTCGCGACCCCTCATCCAGCAGCAAAACATGCAAGGAAGACA
CCTGAAAACAACGATGACAAGTCTAAGCAATCCGCTGGTCATGTCTGCAACTCATGCAACAGGCAAGATCTTGTTCCTTC
TCTTTGAATCTGATCCCGTCTGGAGCATATGCTGTTGTATCCTCGCTG--------ACACACTTCCCTTCTTCAGGACTT
TCAGCTCCTTGAAGGGTCTTGGAGATCATTCCAGGGCGAAGCATGGCGACGCCAAGTAAGGTGGCCTGAGATATGCCGTG
GACAGGCCCGAGCGAGGTGTTAGCTTAGGGGTGATGCTGGTGAACTGAATTTGGGTATCCGAGGCGGAGATGATGTGTAA
AGAGGTCGCTTCTTTGGGTATATCGCTCCCCACGCACCATCAGGATGTTCTCTC-TCTTTGACACCGTTATAGACCGGTG
TTGGTGTGCTGTGCTATGCTACGAAATGCTGTTGATTATGCCGGGATCCTGGAATCACGTGGTTAATTATTATGGTTGGG
TGCTGCTGTCTTGTTGATAAACATTCTTTTGTGCCGTATGTGTTTTTGTGGTGATTCATCATGCTTGTAAGTTGACCCAC
ATTAGAAGGGTCTGCAAAAGAAACAATATACAGAGTAAACACC-----------TCAGGTGCTGTA--------------
---------------------------------------------------------------------AATGGACTTTG
AGCTGACAG-----------------------------CACATTCTGTGCATTCCCCTTCATAGCGGCATGGAAGATCAC
ATGGCACTGAGACTCAAGTACTTGAGCGAGCACTGAGGTGTCTTCCCAGAA-TGGGGCAAGCTCTGGGCA----------
--GCAAAGGTCTGGATTTTTCTATGGCGCCTTGCCCATGACAGCTTGCGGACGCTGATGAACAACACTAGAACCTGGAGG
ATGCAC----------------------GGCTGATCCTGCTGAACCAACCTTGTGCTGCTGCCATCGTTGAGACAATTTT
CACGCGCTAAACCCTGAAGCTCAGCGTCAGGTAGGGGTACTCTTGTG--------TGAAGGTCGCGAAACAAGATCAAAG
CAT-GAGAGAAGGCGCGGGTTTGCTT---------TTCACTATCACCAAGCACCTGACAGAGTTTAGGGAAGAAACGAAG
TCTAACAATCAGCTTATGGTTACGTCACGGGCGAATGCTGCTGGAGTGGGAAAGTGTTAAGCGGACGCCATGACTTGTTT
TGTTGCGATTGATGGGGCGGCCAGTCTG-GGGTTCATCGGGTCACGCTGGAGTCTGAAGCCCTCGCCTGGTGCAGGCCTC
AACTCTTGAGATTCTGACAGGCAGAACTTGGGGTCCTGTATTTTGAGGCTAGAAGCAACTGCATCCTCCAGCGGATGTGT
CCTCCGCTGTCTGGATTAAGCACATGCCGGGCTTTGTTTTTAGGTTTGGTTGCCAGCGATTCTGCCGCAACAGTTTCAGG
TTAATGGAAAGTGTTTTCCACATAAAAAAATACAGACAAATATTAAAAATACTAGATGATAAATGTTTTCCTTTTCTTTA
CTACCTGCTTGTTTTCTTTATCTTTAGTAGTATAATGGAAAATTCCAGCGAAGTCTCATTGAGATAGTGCTCAATGACTC
GCAATCCGCAGATATTCCTACAACGTTTGTTTTGATTCAGCCGGCAGA
>chr3A_1
CCGGGAAAGTCTGAATGATAGAGGTTAGCCTACCCGCTTATGGTTAGGGAAGGAAAACTAAAGGAATAGTGATGTATTGA
TGTCACTAAGGACATCTCCAACGCTGACCCT--AAACCGCCTGCATATGTTCGAACCACGCGGTCCGGACACCGGAAGCC
ATCTAACACGGGCTTGTATTGATCCACCGAGCGGTACGCACCATGTTTTTCCAACAAAGTGGAACCAAAACGTGGGGGAG
AGGGGGAGGGGCTTTGCGGTAGTCCGCTCATCCGTCTGCCCAACCAAAGGGCACCACATGACTCTCTCTCAGTCTGAATG
GTGGAAAGCCGTTGCTAATTTTGTTTGTTTGGCGAAAGATGAAGGCAAACATGGGGGTAGGTCAAGTAACGCCAAACACG
TGTGACATCACTTTCC-GCCATTCACATCTCACATCATGTTTGGCGGAAGCACTTGTTTCA-TTTTTTCAGGAATACTTT
TTATTTTCTTCAAGTGATTTAGTACTAGCATATCAGCGCG----------------------------GAAAGTGAAAAA
CATGACTATTTAGGATGGCGGAAGGTTCTCATTTCGTGCTTATTAGCACGTACAGTCCGGCTTGTTCAAATTTGTTTTGA
AATGAATGGGGACAGGGTTAGATGGCTGGCTCGTATATCAGTAACCGGATACCGTCCCAAACTGATTTTCGGACAAATAT
TGTATCTGTTTGTGGGTTAACGTTGAAGATGCCCTAATGGTACACCTTTAACATGACATAGCAAACTGCTTGAAATGAGT
CGGCGAGAAAATCCGAGATGGAAGTTCACTATAAAGATTTTCCTAATAAATAATCGACGAATAGGTTGGAAAATCTCCCC
TA-AAAAAAGAATAGGTTGGAAAAACACCTTCAAC---AGTACGAAACTCGGCCAAGGCGATCGAAACTCGAAAAAAGAT
G-ATGGAGAAAACACGCCTGGACCCACTGTCATAGGCCGCGAACACGACGGGCCGCGGGGGCGAAACCAACCAAACCCTC
GGCCGTTCCATTCCATAAACCCGAGGAAGCCAC-----CACACCCCTCGCCCCGCTTCCCCT-------------CCGCA
GCGCGGCCACCGTCTCCGCCAGAACCCTAGGGAAATCACGGGGAAGGCGCGGCGGAAGCAGCCGGCCTCCCTCGCCCGGG
AAGATGACGGAGAACCACCGCTTCTGGGGTGCGTATCCTCCTCCCGAACCCCCCGATTTC----------GCCCCCGATC
TGCTCGCGCGGTCCAATTCCGGTGCCCCCGTGCCGCTCGTGCATTTCGCCGCATCTGATCGGCGGGAGGTAATTCCGGCG
GTGGCGGGTTCCGTCCACCGCTTGGGGGATCTACGCGGCCTGTTCCTGCCTAGGGTTCCTCGTTTCTGACCGATCCCTGT
TTGTTTAAAGTAGCGCATTCATGTCCGTCAGGGACCCTACAGTCCATGTTTCGCATGTCCCTTATTCCGTTGGCTCACGA
GTGCATACCGTGTGTTGGTCTAGGGAGAGTGCTGTGGCTACTCTGTCTTGATCTGGATGGAGCATTGTGGTTTCCTGCTT
GTTGTTCCTTGGTCTGGGTTTGGTTTGTCTGAACAATAGTCTCATGGATATCTGGTTGGATGGTA------------GTA
CTTTCAGTAG------------TCATAACCTACATAGTAATGTGTTGTCAGCTTCGGTATATGTTGTGCTGTGACCTGCA
TTTCTTCTGAAGATGAGCATGCTCTGGTAATTGTTCGTGTAGCGCCGCCAATGCATTGTTTCTGTTCTGTGTGAAGAAAT
ATCCCCATTCTGCTTGCCGTAATAATGTGCGGTGCATATTTCTCTGGGGCGCTTCAGAAAGCAACAGATATTTGTGTTTG
CTAATTTCCCATATATTTGTTAAATGACTAATGGCTACTCTGCATGAATGATAACATT-TTAGGAGTTGTCGTCAAGCCT
GGAGAGACAGTGAAGTGTGACCCAGGAGATTCACATTATCACATTTCGACGGTGTGTTTTACACGCTTCATTTATAAGTG
CCCTTCTAGCTTATTTGTAGGTGGATCAAGTTTGCTTACTCTTCAGGTATTTGCTTTTCTCGTTTACTACAGATAGCATT
GGAGCCTGGCAAGGCAGAAGAGGATGTGCAAGTTTTTGTCAAAATTGACGATACAAGGATTATGCTTGGCACACTTTCAG
TTGATAATCATCCTCATGTTTTAGCTGATCTGGTGTTCAAAGAGGAGTTTGAGCTGTTCCACTCCTCAATGACCAGCAAC
ATCAGCTTTATGGGCTACAAATTTGATATTATCAAAAGATATCCTTCCACATTTCTTTCTTCAGTGTTTGCTAAGTAGCT
TGAATATACATTTGTGTTCTTTAACTGTTTTCCTGTCTGTAGTCACATTTCACTCATGTACTAAACAAGGTAAATATTGT
TTTTCATTTTAGTATTGGGCATCTATGATGTTTTCTTTGTACAGTTGATAACATGGCATAACGTCCGTATATCTGATGTT
TCAGGTGCTGATTCTGATGAGGAGGTTCCATTGGCTATTCCACTAGACATCAATACAGACGGTATATTCTTTTCCTATGC
ATAACAGTTGTTGTTTAAGA------------------------------------------------------------
---------------GTTCTAGAATGAAAACATGCCGCATTGACCCTTGGCATGTTTGACATTATTTACTTTCAGGTTAC
AAAAACAATGAAGCTACACATGGTGCCAATAATCTTCTTATTGCACCAAGGCCTGCTGATGCTCCATCCTCTATACCAAA
GGCTAAAGTTGAGGAAACAAATAGTCCTGGAAAGCAAAAGGGAGATGATAAGGTTTGTATCTTTGCTAAGAATAATCAGC
CGTGGGTTATGATGGAACTGTTGTTTCCTGTATGATTTATTTTCTTGCTCTTGTTGTTCTGGATTGTGCAGGGAGAATGT
TGGTAAATAAGTACAGTGAACATTCTAACATGTAACTGAAAATAGTTAACATGGACTATGCATTCATTTTGACAGCTTTT
TTTCAAGTATATGATCAGTGTTTCCATGTGTGCACACAATACTTACTTTTATGCAACCTACCACATTCAATTCTAGTTGG
ATGACAGATCCACAAATAGTGG-------TTGTAGCAGCCCAATCAGTGGCCTAGGGAGTTGATACTTTGTTGGTTGTGA
AACCTGACATGGATTTGGTAGGTGTGAAAACTAAAGTCCCCTGATACTGAATACGTTTGCAGGATAAGACTGGTATGCAG
AATTCCAGTGATGGCCTTGATAATGAGAGTTCTGATCAAGATGTGGATTATCCTCGAAAGGTGCGAGATTGCTCAAAGAG
ACCTGTTATTTTGATGCCTTATCATTTCGTAAAATCCTGAAACTCTTTCTGTTTTGACATGTTTAGAGAACAAAGGACGA
TTATAATCCAATGGAAACACCTCTGAATACACCCCAGGGGAAGAGGGCAAAGATAGCAACACCAACTACGGGCAACAAAA
CTGGTGTGAAGTGATCTTTATTTTATACTCCCTCCGCCCCAAAATAACTGTCTCAAGCTTAGTACAACTTTGTACAAAGT
TGAGACACTTATTTTGGGACGGAGGAAGTATTTATTTAATCTGCTGAACTTGCATTGTTCTTTTAAAGGCACAGGAATCT
CACTGCTTTATGAATAACTTGTGTGCAGGCTATGTCCATGTCGCGACCCCTCATCCAGCAGCAAAACAGGCCCGTAAGCC
AGGTGACCATGTCCACGTTGCGACCCCTCATCCGGCAGCAAAACAAGCTGGTAAGTCAGGTGACCATGTCCGCGTTGCGA
CCCCTCATCCGGCAGCAAAACAGGCTCGTAAGTCAGGTGACCATGTCCACGTCGCGACCCCTCATACGGCAGCAAAACAG
GCTCATAAGTCAGGTGACCAT---------------------------------------------------------GT
CCACGTCGCGACCCCTCATCCAGCAGCAAAACAGGCTCGTAAGTCAGGTGACCACGTCCACGTCGCGACCCCTCATCCAG
CAGCAAAACAGGCTCGTAAGTCAGGTGACCACGTCCACGTCGCGACCCCTCATCCAGCAGCAAAACATGCAAGGAAGACG
CCTGAAAACAACGACGACAAGTCTAAGCAATCCGCTGGCCACGTCTGCAACTCATGCAACAGGCAAGATCTTGTTCCTTC
TCTTTGAATCTGATCCCGTCTGGAGCAAATGCTGCTGTATCCTCGCTG--------ACACACTTTCCTTCTTCAGGACTT
TCAGCTCCTTGAAGGGTCTTGGAGATCATTCCAGGGCGAAGCATGGCGACGCCAAGTAAGGTGGCCTGAGATATACCGTG
GACAGGCTCGAGTGAGGTGTTATCTTAGGGGGGATGCTGGTGAACTGAATTTGGGTATCCGAGGCAGAGATGATGTGTAA
AGAGGTCGCTTCTTTGGGTATATCGCTCCCCACGCACGATCAGGATGTTCTCTCTTCTTTGACACCGTTTTAGAGCGGTG
TTGGTGTGCTGTGCTATGCTACGAAATGCTGTTGATTGTGCCGGGATCCTGGAATCATGTGGTTAATTATTATGGCTGGG
TACTACTGTCTTGTTGATAAACGTTGTTTTGTGCCGTATGCGTTTTTTCA-TGATTCTTCATGCTTGTAAGTTGACCCAC
ATTAGCAGGGTCTGCAAAAGAAACAT--TACAGAGTAAACACCCTCCGGTGCTGTCAAAGAACAGGGGGGCGACTAGGCG
CCCATCTTCAGATAGGGGCCAAACGCTGCTGACAGAGGTGGCGGAGCTGATAAACCCGGTAACAGAGCAATGTAACGTTC
GGCTCTGGGACTGAAGTCAACACAACACAGAGATGCAAGTAG--------------------------------------
-------------TCAAGTACTTCAGCGAACACACAGGCGTCCTCCCAGAAAATGATCTCC-------------------
---------------------------------------------------------------------------GGAGG
TTGCAC----------------------GGCTGATCCTGCTGAACCAACCTTCCGCTGCTGCCGCCGTTGAGACAATCTT
CACGCA--AAACCCTGAAGCTCAGCGTCACGTAGGGGGTACTCTTGTGGGACCGCTGAACGCCGGGAAACAAGATCAAAG
GCGGGAGAGAAGGTGCGACCGCTCAGGATGCTTGCTTCACTATCACCAAGCACCTGACAGAGTTTGGGGGAAGAAACGAA
AGTCCGAAAATCAG------------------------------------------------------------------
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>chr3B_989
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----------------------------------------------------------GGACGAAACCAACCAAACCCTT
GTCCGTTCCATTCCATAAACCCGAGGAAGCAGAGCGCGCACACCCCTCGCCTCGCTTCCCCTCCCCCGCTCCCCACCGCA
GCGCGGCCACCGTCTCCGCCAGAACCCTAGGAAAACCACGGAGAAGACGCGGAGGAAGCAGCCGGCCTCCCTCGCCCGGG
AAGATGACGGAGAACCACCGCTTCTGGGGTGCGTATCCTCCTCCCGAACCCCCCCAATTTCGCCCCCGATGCCCCCGATC
TGCTTGCGCGGTCCAATTCCGGTGCCCCCGTGCTGCTCGTGCATTTCGCCGCATCTGATCGGCGGGGGGTAATTCCGGCG
GCGACGGGTTCCGTCCAGCGGTCGGGGGATCTACGCGACCTGTTCCTGCCTAGGGTTCCTCGATTCTGACCGATCTCTGT
TTGTTTAAAGTAGCGCATCCATGTCTGTCGGGGCCCCTGCAATCCGTGATTCGCATTTCCCTTGTTTCGTTGGTTGGGGA
GTGCATGCCGTGACCTGATCTAGGGAGAGTGCTGTGGGTATTCTGCCTTGATCTGGATGGAGCATTGTGGTTTCCTGCTT
GTTGTTCCTGGGTCTGGGTTTGGTTCGTCTGAACAGTAGTCTCATGGATATCCGGTCGGATGATA------------TTA
GTTTCTCCTGTGCTTTCAGTGCTCATAACCTACATAGTAATGTGTTGTCAGCTTCGGTATATGTTGTGCTGTGACCTGCA
TTTCTTCTGAAGATGAGCATGCTCTGGTAATTGTTCGTGTAGCACTGCCAATGCATTGTTTCTGTTCTGTATGAAGAAAT
GTCCCCATTCTGTTTGCCTTAATAATGTGTGGTGCATATTTCTCTGGGGCGCTTCAGAAAGCAACAGATATTTGTGTTTG
CGAATTTCCCATAT--TTGGTAAATGACTAATGGCTACTCTGCATGGATGCCAACATTTTTAGGAGTGGTCGTCAAACCT
GGAGAGACAGTGAAGTGTGACCCAGGAGATTCATATTATCACATTTCGACGGTGTGTTTTACACACTTCATTTATAAGTG
GCCTTCTAGCTTATTTGTAGGTGGATCAAGTTTGCTTACTCTTCAGGTGTTTGCTTTTCTCGTTTACTACAGATAGCATT
GGAGGCTGGCAAGGCAGAAGAGGATGTGCAAGTTTTCGTTAAAATTGACGATACAAGGATTATGCTTGGCACACTTTCAG
TTGATAATCATCCTCATGTCTTAGCTGATCTGGTGTTCAAAAAGGAGTTTGAGCTGTTGCACTCCTCAATGACCAGCAAC
ATCAGCTTTATGGGCTACAAATTTGATATTATGAAAAGATATCCTTCCACATTTCATTCTTCAATGTTTGCTAAGTAGCT
TGAATATGCATTTGTGTTCTTTAACTGTTTTCCTGTCTGTAGTCACATCTCACTCATGTACTAAACAAGGTAAATATTGT
TTTTCATTTCAGTACTGGGCATCTATGATGTTCTCTTTGTACAGTTCATAACATGGCATAACTTCCATATATCTGATGTT
TCAGATGCTGAATCTGACGAGGAGGTTCCATTGGCTATTCCACTAGACTTCAATACAGACGGTATATTGTTTTCCTATGC
ATAACAGTTGTTGTTTAAGAGTTCAGAACGATGTATCTGCTTTAAAGATTTGCCTGTCTAGTAAGTTTAAGTTGTGATTT
TCCGTCATTGTCTTTGTTCTAGAATGAAAACATGCCACATTGACCCTTGGCATGTTTGACATTATTTACTTTCAGGTTAC
AAAAACAATGAAGCCGCACATGGTGCCAATAATCTT---ATTGCACCAAGGCCTGCTGATGCTCCATCCTCTATACCAAT
GGCTAAAGTTGAGGGAACAAATAGTCCTGGAAAGCAAAAGGGAGATGATAAGGTTTGTATCTTTGTTAAGAATAATCAAC
TGTGGGTTATGATGGAACTGTTGTTTCCTGTATGATTTATTTTCTTGCTCTTGTTGTTCTGGTTTGTGCAGGGAGAATGT
TGGTAAATAAGTTCAGTGAACATTCTAACATGTAACTAAAAATAGTTAACATGGACTATGTATCCATTTTTGACAGC-TT
TTTTAAGTATATGATCAGTGTTTCTGTGTGTGCACACAATACTTACTTTTATGGAACCTACCACATTCAATTATAGTTGG
GTGACAGATCCACAAATAGTGG-------TTGTAGCAGCCCAATCAGTGTCCTTGGGAGTTGATACTTTGTTGGTTCTGA
AACCTGACATGGATTTGTTAGGTGTGAAAACTAA-GTTCCCTGATGCTGAATACGTTCGCAGGATAAGACTGGTATGCAG
AATTCCAGTGATGGCGTTGATAATGAGAGTTCTGATCAAGATGTGGATTATCCTCGAAAGGTGCGAGATTGCTCAAAGAG
ACCTGTTATTTTGATGCCTTCTCATTTTGTAAAATCCTGAAATTCTTTATGTTTTGGCATGTTTAGAGAACAAAGGACGA
TTATAATCCAATGGAAACACCTCTGAATACACCCCAGGGGAAGAGGGCAAAGATAGCAACACCAACTACGGGCAACAAAA
CTGGTGTGAAGTGATCTTTATTTTATA-----------------------------------------------------
----------------------------------TTTAATCTGCTGAACTTGCATTGTTCTTTTAAAGGCACAGGAATCT
CACTGCTCGATGAACAACTTGCGTGCAGGCTATGTCCACGTTGCGACCCCTCATCCGGCAGCAAAACAGGCTCGCAAGTC
AGGCGACCATGTCCACGTTGCGACC-------------------------------------------------------
--CCTCATCCGGCAATAAAACAGGCTCGTAAGTCAGGTGACCATGTCCACGTCGCGACCCCTCATCCAGCAGCAAAACAG
GCTCATAAGTCAGGTGAACATGTCCATGTCGCAACCCCTCATCCAGCAGCAAAACAGGCTCGTAAGTCAGTTGACCGCGT
CCACGTCGCGACCCCTCATCCG---------------------------------------------------------G
CAGCAAAACAGGCTTGTAAGTCAGGTGACCACGTCCATGTCGTGACCCCTCATCCAGCAGCAAAACATGCAAGGAAGACA
CTTGAAAACAATGATGACAAGTCTAAGCAATCCGCTGGCCACGTCTGCAACTCATGCAACAGGCAAGATCTTGTTCCTTC
TCTTTGAATCTGATCACACCTGGAGCATATGCTGTTGTATCCTGACACACACAAACACACGCTTATCTTCTTCAGGACTT
TCAGCTCCTTGAAGGGTCTTGGAGATCATTCCAGGGCGAAGCATGGCGACGCCAAGTAAGGTGGCCTGAGATATGCCGTG
GACAGG--------AGGTGTTAGCTTAGGGGGGATGCTGGTGAACTGAATTTGGGTATCCAAGGCAGAGATGATGTGTAA
AGAGGTCGCTTCTTTGGGTCTATTGCTCCCCACGCACCATCAGGATGTTCTCTC-TCTTTGACACCGTTCTAGACTGGTG
TTGGTG--CTATGCTATGCTACGAAGTGCTGTCAATTGTGCCAGGATCCTGGAATCGCGTGGTTAATTATTATGGTTGGG
TGCTACTGTCTTGTTGATAAACATTCTTTTGTGCTGTATCTGTTCTTTTGGTGATTCATCATGCTTGTAAGTTGG-CCAC
ATTAGAAGGGTCTGCAAAAGAAACATTATACAGAGTAAACACC-----------TCAAAGAACAGGGGGGCGACTAGGCG
CCCATCTTCGGT--------------------------------------TAAACCTTGTAACGGAGCGAATGGACTTTG
AGCTGACTAATGGCCTTTCTGGGCCATCGGATGCACAACACATTCTGTCCATTCCCCTTCGTAGCGGCACGGAAGATCAC
ATGTCACTGAGACGCAAGTGCTTCAGCGAACACTGAGGTGTCTTCCCGGAAATGGGGCAAGCTCTGGGCACTGAAGCTCC
CAGCAAAGGTCTGGATTTTTCAATGGTGCCTTGTCCATGACAGCTTGCCGACACTCATGAACAGTACTAAGCGCAAACAT
GTCGACATGGCGCCAAATGAACCTGGAGGGCTGATCCTGCTGAACCAACCTTCTGCTGCTTCCATCGGTGAGACAATTTT
CACGCGCTAAACCCTGAAGCTCAGCGTCAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCGATTGATGGGGCGGCCAGTTCTTGGGTTCATCGGGTCACGCTGCTTGA--------------------------
-------GAGATTCTGACAGGCAGAACTTGGGGTCCTGTATTGTGAGGCTAGAAGCAACCGCATCCTCCA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>SNPs
-----S-----------------S--------S--S----S---------------------------------------
----------SS------------S------SS--------S------S-S-------------------S--SS-----
---S----------------S----S------------S----S--------SSS-SSSSSSS-----------------
-------------------S------------------S----------------S----S-------------S-----
-S--------------------------S--S----------------------S--S-S-------SS---------S-
-----S--SSSS--S-S--------------------------------------------S------S--S--S--S--
----------------------SSSSSSSSSS-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS
----------S----S--------S---S------S----------S-------S-----S-----------------S-
--SSS---S---S------S----S-S-S---SSS---S----S-----S-S-SSSSS----S--------S-------S
SS---S-----SS-----------------------S-------S---S---S---------------------------
---S-------------------------------------S-------------------------------S------
--S----S-----------------S--------SSSS--------S-----------------------S------S-S
SS------------------------------------------------------------------------------
------------------S-----------S-------------------------------------------S----S
------------------------------S-------------------------------------------------
-----------------------------------S----SS------S-----S-------------------------
--S------------S-------------------------------------------------------S--------
-------------------S---S---S-------------------S--------------S-----------------
-----------------------S--------------------------------------------------------
SS-----------------------------SS-S--S---S---------------SS-S-------------------
------------------S----------------------------------------------SSSSSSSSSSSS---
------------------------------------S----------------------------S--------------
--------------------------------------S-----------------------------------SS----
--------------------------------------------------------------------------------
-S----------S--------------------------S----------------------------------------
------------------------------------------------------------SS------------------
----------------------------------------------------S---------------------------
----S-----------------S----------------S----------------------------S-----------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----------------------------S-------------S-SS-------S---------------S------S---
---S--S---S------------------------S---------------------------S----------------
-------------------------------------------S-------------------------S----------
------------S----------------------S--------------------------------------------
--S-------------------------------------------------------------S---------------
-------------------------------------------------------S-------------------S----
S-------------------------------------------------------------------------------
----------------------SSSSSSS-----------------S-------------SS------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
-S--------------------------S----------------------------------S---S---------S--
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S----------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S--S--------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
-------S----S------------------S---------------------------------S--------------
---------------------------------------------------------------------S----------
-------------------------------------S------------------------------------------
----S------------------------------------------S--------------------------------
-------------------------S-------------------------------SSSSSSSSS--------------
--------------------------------------------------------------------------------
-------S----------------------------------------S-----------S--------S----------
---S-------------------S-----S--------------------------------------------------
---------------------S----S------S--------------S---S--S-------SS----SSSS-S-----
S---------------------------------------------------S---------------------------
-----------------------------S-------SSSSSS-SSS------------S-S--S---------------
SSS----------S---SSSSSS-SS---------------------------------------S---S-SS--SSS-S
SS-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------------------SSS---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----------------------------------S----------------S----------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCATGCCTCTCTCTCAGTCC-----
--------------------------------------------------------------------------------
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>reverse_1578
--------------------------------------------------------------------------------
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---------------------------------------------------------GAGCGCATTGTGGTTTCCTG---
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_526
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GCATGTTGGTTTCGCCCAAA----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_2283
--------------------------------------------------------------------------------
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------------------------------------------GGGAGTTTGAGCTGTTGCAC------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_667
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------GCGGATAGGGTTGGATGACC-----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_2710
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------CGTTGTGGTTT
TCCCTCTTTGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2183
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---GACTGGCAAGGCAGAAGAGA---------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_3356
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CGCAG
AATTCCAGTGATGGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_2870
--------------------------------------------------------------------------------
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---------------------------------------------------CCTGCTGATGCTCCATCCC----------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_4630
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------ATAGACCGGTG
TTGGTGTGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_3598
--------------------------------------------------------------------------------
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----------------------------------------------------------ACACCAACTACGGGCAACAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_5497
--------------------------------------------------------------------------------
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--------------------------------------------------------TTAAGCGGACGCCATGACTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
