>input_sequence_47066
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------------------------------------------------------------ATGAGCACGAAATTGCTCAA
CAGCTTGAGCCTGAGGAGGCTCCTAGGACAGCAAAGAAACCCAATCGGTGGGTACAGCGTATTTATTTTGTCTTATTTGA
TCATGGAAGGTGCTCATCACATATATGACTCCTTGCCTGTGTATTTTTTTTTCTTGGTAGACTTATACACAGCATCGCGA
GCATGGAGCTCTAGCACTTCATTTTCTGGTGCTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGCAGA
TTCTTGGAAAGATGCTGACTTCCGTGGTGTTTACCGGGTACTTGCTTGATATATCCTATTAGAATAACTACTCGTATTTT
GGTTCTCATG----------------TTGTTTGT---------------TTTTGTTAGGCCATTATTTGTGGCAGCGTTG
GACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGAGGCATGTTTGAC
CAGAGGAGGGCAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGAGCAGCTTGGTAC
ATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTGCTTTCTACTCTATAGCACGTGATTCTGTTTTTTTGCCTTTTGATGT
GAAATCAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTATTATGTCTTATTTCAGTGCTGCAG
TATATGTTGAGGGTGATATTGAGACTAGAGCCTACAATGATAACATCAATAATCAAGTG-AAAATCGTACCTGAGATCTG
TGTGCGGTTTGATGGTAAGTTAATCTGAGGTTCAAGTAA--TTTTTCTTTCCCTTGGCAATCTGTTTTGTTGT--AAATA
TTCGTTAGCCAAATAAACTAATGCAAATGTG--------GCACAAGCTACCTGAGTTATTTCTTGAAGAATGCCCTGCTG
ATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAAGCAGC---TTAGTTAGAAAACAG
ACCTACCTAAGGGGAGCGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT--------CTGCCTGTGGA
GTCAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCACTC-------TCAGTATATTGTACTATC
ATCTCTGAATTCATGTCATTTTCATTATTTACAGAAATTTTGCTTTTGTTCATTTC-CATTTGTATGTTTTTGATGTATG
GGAAATTTAATCTTTTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAG
TAAGTGCGGTCTGTATCTCATTTTTTTTTTCTTATATAAGGGAAGGCATCATGGCATATACTCTCTCCGTCCCACAATAT
AAGAAGTTTTTTGACACTACACTAATGTCAAAAAATGTCTTACATTGTGGG----------------------ACGGAGG
GAGTAGTAAATAAGTGCAGATCATCGGACAGGCAGCGTTGTTGTTCTTTTCAGTGCTCTCCGCTATGTCCGTGAACAGAC
TTGTGTGCATAAAGAATCGCATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGG
GGAAGGGCTATTTTAG----------------------------------------------------------------
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>chr3D_1_TraesCS3D01G308600
CTCTGTCCCGGCGATGCGCCTAGCCTTGTCTTCTGGAGGTGTGTCTCCAGCGGATCTCGTGGGATCGGTCGGCGTTTTGT
CCTCAGTGGATCCGGTCTTTGTTCGCC--------TGTGTCTGAATATTAGATCCTTTCGATCTACGCTTCTCTTCATCG
TCGCAGTTGCTGTTTCTGGTGCG----CTAGTCCTATGCGGCCTTAGCATGACGACTTTCTGACTGTCGACTACACCAAG
GTTTGTCCGGCTCCAATGAGGAAGGGGTGATGACGGCGAAGCGTGGTCTACGGACCTGAATGTAATTTTTATTTTTGATG
TTCTTTGTACTATCTTGATATTTGATGAATAGTTTGGAAGTTAAAAAAAAAAGGGTTCGTGGTCCCTTGCACCGCGATTT
TTCCTCTCGACTCACTCAGCCCTTCGATCTTCCTCGCATGAGCTAATGCTTTGACCTAACGAAGCTTCAACCGGGCCAAT
TG----CGGATGTAAAACCACCCTAAAATCTTCCGCCGGTGCCCCTGAGCTGCCGTCGCCGTCGCCGTAGCTTGGCGTCA
GCGCGGAGGCCCGCTCCCGCTCCCGCTCGCCCACCCAACCCCT---CCTCTCACGCGCGTCGCCGCCGTCGCCGTTTCCG
TTCTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCATTTTTGAGGTATGGCCGCCGCATA
GTCACCCACCCAGTGATCAATTGAACCGGCCTCTACAAGTTCCAGGATGAGATTGGTACATCTAGATCCGACCCTGTCAA
CAGAGGATGAGATTTTGAGAGATATATGGTGCCCCTTAAGGGCAAATCAAGCCATAAGTAGTTAACATTTTGCTGTGCGT
TCGTGCTACATCACTGGCTTTCTGATGAGAAGCTTTTAGGAATTACACACAAG-CTAGCCGCATTCCTTTGTTATTGAGG
TTGTTTAATTTTGTGACTATGTCATTTCACCCTTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCTCAA
CAGCTTGAGCCTGAGGAGGCTCCTAGGACAGCAAAGAAACCCAATCGGTGGGTACAGCGTATTTATTTTGTCTTATTTGA
TCATGGAAGGTGCTCATCACATATATGACTCCTTGCCTGTGTATTTTTTTTTCTTGGTAGACTTATACACAGCATCGCGA
GCATGGAGCTCTAGCACTTCATTTTCTGGTGCTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGCAGA
TTCTTGGAAAGATGCTGACTTCCGTGGTGTTTACCGGGTACTTGCTTGATATATCCTATTAGAATAACTACTCGTATTTT
GGTTCTCATG----------------TTGTTTGT---------------TTTTGTTAGGCCATTATTTGTGGCAGCGTTG
GACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGAGGCATGTTTGAC
CAGAGGAGGGCAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGAGCAGCTTGGTAC
ATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTGCTTTCTACTCTATAGCACGTGATTCTGTTTTTTTGCCTTTTGATGT
GAAATCAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTATTATGTCTTATTTCAGTGCTGCAG
TATATGTTGAGGGTGATATTGAGACTAGAGCCTACAATGATAACATCAATAATCAAGTG-AAAATCGTACCTGAGATCTG
TGTGCGGTTTGATGGTAAGTTAATCTGAGGTTCAAGTAA--TTTTTCTTTCCCTTGGCAATCTGTTTTGTTGT--AAATA
TTCGTTAGCCAAATAAACTAATGCAAATGTG--------GCACAAGCTACCTGAGTTATTTCTTGAAGAATGCCCTGCTG
ATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAAGCAGC---TTAGTTAGAAAACAG
ACCTACCTAAGGGGAGCGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT--------CTGCCTGTGGA
GTCAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCACTC-------TCAGTATATTGTACTATC
ATCTCTGAATTCATGTCATTTTCATTATTTACAGAAATTTTGCTTTTGTTCATTTC-CATTTGTATGTTTTTGATGTATG
GGAAATTTAATCTTTTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAG
TAAGTGCGGTCTGTATCTCATTTTTTTTTTCTTATATAAGGGAAGGCATCATGGCATATACTCTCTCCGTCCCACAATAT
AAGAAGTTTTTTGACACTACACTAATGTCAAAAAATGTCTTACATTGTGGG----------------------ACGGAGG
GAGTAGTAAATAAGTGCAGATCATCGGACAGGCAGCGTTGTTGTTCTTTTCAGTGCTCTCCGCTATGTCCGTGAACAGAC
TTGTGTGCATAAAGAATCGCATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGG
GGAAGGGCTATTTTAGTTGCGACCTGAGGGACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCA-GGCA
ACTTTGCCAAAGCACTTTTATTAGGTCCATTGATAGTAACTGGACTGGAGAACTGAAAGCCCTTGTATATGCAAGCGGTG
CTCTCTCTGCCTTTTTGAGCGTATGGGGGCT-CTTCTGGCTGTTGAAATCGAGTTTATATTGAGCTGCAGGAGAGAAACG
GCGGTCTATTGAGATCTCTGAAGATGCTTTTATTTTTCACAGC---TAGTACTGATGCCCCGTGCTCGTAACAATGACCA
GTCTCAGTGTCTATTCATAATACTTG-CATCTTTGTTTTAAGCCCTACGTGCTAGCATACCATATCGCAGTTAGTTGGCT
CAAATCTGAATTTACTTATCTGCTGCAGAAATACAGCTCCTGATGCTCATGTCTCTTTGTCTGCTGGTCTGACTGGCCTG
TCTAGAGTGTTTTCATTTTCTGGTTGCTCTATCTTTTTATTTTCA-----------------------------------
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---------TTTTTCTATGTACTCCCTTCGTCCTAATTTACATGCCATC---TTATTTCATGATTTAGCTTACTGTCAAT
TTGACCAATAATGTAAGAGTCATGTGTCATAAATATCATACTGTTAGAATTT--------TTTGGGGGAGTAGGAATTCA
ATGGTATAACTTTTGTGGTACTTAATAAATGTTTTATTGGTCAAATTGATGGTCAAACTT-AAACTTGAAATTCATTGGT
TCCACGCAAACTGGGACACCGTAGTACATGCACAGTA-TTTTTTTTTCATGAATATAGGTGATTTTTTTGTTCATGCCTT
GTCGGCGTCCTCCCGTTGCGGCTTCGGCCCCGGTGCTCTGAAAGATGCGCCCTTCAGGCTTCCTTGGCTTGCCGGCGTTT
TGGCAACTCCGGCCTCGTCTGACTAGATCTGCGTCTCTCCAAATCCTGGCTCGCCGGTGTTGCTGGTTGCTGTCGCATCC
CGTGTGCCGACTCTCTTCGCACAACCGCCGCCTCTCCCA
>chr3B_1
CTCTGTCCCGGCGATGCGCCTAGCCTTGTCTTCGAGAGGTGTGTCTCCAGCAGATCTCGTGGGATCGGTTGGTGTTTTGT
CTTCGGTGGATCCGGTCTTCGTTCGTCTGTGTCTGTGTGTCTGAATATTAGATTTTTT--ATCTACGCTTCTTTTCATCA
TCGCAGTTGCTGTTCTGGTGCGCTAATCTAATCCTATGTGGCCTTAGCACGACGACTTTCTAACCGTCGACTACAACAAA
GTTTGTCTGGCTCCAATGAGTAAGGGGCGATGACGGCGAGGCGTGGTCTACCAACCTGAATGTAATTTT--TTTTTTATG
TTCTTTGCACTATCTTGATATTTAATAAATAGTTTGGAAGTTAAAAAAAAAC-GGTTCGTGGTCCCTTGCACGGCGATTT
TTCCTCTTGACTCACTCAGCCCTTCGATCTTCCTCGCGTGACCTAATGCTTTGACCTAACGAAGCTTCAACCGGGCCAAT
TGGATGCGGATGTAAAACCACCCTAAAATCTTCCGCAGGTGCCCCTGAGCT------GCCGCCGCCGTAGCTTGGCGTCA
GCGCGGAGGCCCGCTCCCGCTCCCGCTCGCCCACCCAATCCCTCCGCCTCTCACGCGCGTCGCCGCCGTCGCCGTTTCCG
TTGTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCGTTTTCGAGGTATGGCCGCCGCATA
GTCACCCACCCAGTGATCAATTGAACGGACCTCTACAAGTTCCAGGATGAGATTAGTACATCTAGATCCGACCCTGTCAA
CAGAGGATGAGATTCTGAGAGATATATAGTGCCCCTTAAGGGCAAATCAAGCAATAAGTAGTTAACATTTTCCTGTGCTT
TCGTGCTACATCACTGGCTTTCTGA--AGAAGCTTTTAGGAATTACACACAACCCTAGCCGCATTCCTTTGTTATTGAGG
CTGTTTAATTATGTGGTTATGCCATTTCACCCTTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCTCAA
CAGCTTGAGCCTGAGGAGGCTCTTAGGACAGCAAAGAAACCCAATTGGTGGGTACAACGTATTTATTTTGTCTTATTTGA
TCATGGAAGGGGCTCATCACATATATGACTCCTTGCTTGTGTATTTTTTTTTCTTGGTAGACTTATACACAGCATCGAGA
GCATGGAGCTCTAGCACTTCATTTTCTGGTGTTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATGTTGCAGA
TTCTTGGAAAGATGCTGACTTCCGTGGTGTTTACCGGGTACTTGCTTGATATATCCTATTAGAATAACTACTCATATTTT
GGTTCTCATGTTGACACTCGGTTGGCTTGTTTGT---------------TTTTGTTAGGCCATTATTTGTGGCAGCGTTG
GACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATATTGTGACTGTATTTACTGTCGGGACTGGAGGCATGTTTGAC
CAGAGGAGGGCAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGAGCAGCTTGGTAC
ATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTGCTTTCTACTCTATAGCACATGATTCTGTTTTTTTGCCTTTTGATGT
GAAATCAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTATTATGTCTTATTTCAGTGCTGCAG
TATATGTTGAGGGTGATATTGAGACTAGAGTCTACAATGATGACATCAATAATCTAGTG-AAAATCGTACCTGAGATCTG
TGTGCGGTTTGATGGTAAGTTAATCTGAGGTTCAAGTATTTTTTTTCTTTCCTTTGGCAATCTGTTTTGTTGT--AAACA
TTCGTTAGTCAAATAAACTAATGCAAATGTGTTAGCTGAGCACAAGCTAACTGAGTTATTTCTTGAAGAATTCCCTGCTG
ATTTTTGTTCTCTTGTGGTACCCCATCCATCC-----------------CTACCAAAGCAGC---TTAGTTAGAAAACAG
ACCTACCTAAAGGGAGTGAGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT--------CTG--TGTGGA
CTCAAGGACTAGAT--GTAGTTCTTCATGCAGCTTCATTTGGACTCCCCTCACTC-------TCAGTATATTGTGCTATC
ATATCTGAATTCATGTCATTTTCATTACTTACAGAATTTTTGGTTTTGTTCATTTC-CATTTGTATGATTTTGATGT-TG
GGAAATTTAATATTTTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAG
TAAGTGCGGTCTGTATCTC--TTTTTTTTTCTTATATAAGGGAAGGCATCATAGCATATACTCCCTCCGTCCCACAATAT
AAGATGTTTTTTGACACTATACTAATGTCAAAAAATGTCTTACATTGTGGG----------------------ACGGAGG
GAGTAGTAAATAAGTGCAGACCATCGGACAGGCAGTGTTGTTGTTCTTTTCAGTGCTCTCCGCTATGTCCGTGAACAGAC
TTGTGTGCATAAAGAATCACATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGG
GGAGGGGCTATTTTAGTTGCGACCTGAGGGACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCAGGGCA
ACTTTGCCAAAGCACTTTTATTAGGTCCATTGATAATAACTGGACTGGAGAACTGAAAGCCCTTGTAGATGCAAGCGGTG
CTCTCTCTGCCTTTTTGAGCGTATGGGGGCA-CTTCTGGTTGTTGAAATCGAGTTTATATTGAGCTGCAGGA--GAAACG
GCGGTCTATTGAGATCTCTGAAGATGCTTTTATTTTTCACAGC---TAGTAATGATGCCCCGTGCTCGTAACAATGACCA
GTCTCAGTGTCTATTCATAATACTTGGCGTCTTTGTTTTAAGCCCTACGTGCTAGCATACCATATCGCAGTTAGTTCGCT
CAAATCTGAATTTACTTATCTGCTGCAGAAATACAGCTCCTGATGCTCATGTCTCTTTGTCTGCTGGTCTGACTGGCCTG
CCTAGAGTGTTTTCATTTTCTGGTTGCTCTATCTTTTTATTTTCA-----------------------------------
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---------TTTTTCTATGTACTCTCTTCGTCCTAATTTACATGCCATC---TTATTTCATGATTTAGCTTACTGTCAAT
TTGACCAATAATGTAAGAGTCACGTGTCATAAATATCATACTGTTAGAATTT--------TTTTGGGGAGTAGGAATTCA
ATGG--------TTGTGGTACTTAATAAATGTTTTATTGGCCAAATTGATGGTCAAACTTAAAACTTGAAATGCATTGGT
TCCACACAAACTGGGACACCGTAGTACATGCATAATAGTTTTTTTTTCATGAATATAGGTGATTTTTTTGTTCATGCCTT
GTCGGCGTCCTCCCTTTGCTGCTCCGGCCCTAGTGCTCTAAAAGCTGCGCCCTTCCGGCTTCCTTGGCTCTCCGGCGTTT
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>chr3A_410
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---------------------CTTCGATCTTCCTCGCCTGACCTAATGCTTTGACCTAACGAAGTTTCAACCGGGCCAAT
TG----CGGA-GTAAACCCACCCTAAAATCTTCCGCCGGTGCCCCTGAGCT------GCCGCCGCCGTAGCTTGGCGTCA
GCGCGGAGGCCCGCTCCCGCTC------GCCCACCCAACCCCTCCGCCTCTCACGCGCGTCGCCGCCGTCGCCGTTTCCG
TTCTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCATTTTTGAGGTATGACCGCCGCATA
GTCACCCACCCAGTGATCAATTGAACCGACCTCTACAAGTTCCAGGATGAGATTAGTACATCTAGATCCGACCCTGTCAA
CAGAGGATTAGATTTTGAGAGATATATAGTGCCCCCTAAGGGCAAATCAAGCAATAAGTAGTTAACATTTTGCTGTGCGT
TCGTGCTACATCACTGGCTTTCCGATGAGAAGCTTTTAGGAATTACACACAAG-CTAGCCGCATTCCTTTGTTATTGAGG
TTGTTTAATTATGTGATTATGTCATTTCACCCCTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCTCAA
CAGCTTGAGCCTGACGAGGCTCTTAGGACTGCGAAGAAACCCAATTGGTGGGTACAGCGTATTTATTTTGTCTTATTTGA
TCATGGAAGGTGCTCATCACATATATGACTCCTTGCTTGTGTATTTTTTT--CTTGCTAGACTTATACACAGCATCGCGA
GCATGGATCTCTAGCACATCATTTTCTGGTGTTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGCAGA
TTCTTGGAAAGATGCTGACTTCCGTGGTGTTTATCGGGTACTTGCTTGATATATCCTATTAGAATAACTACCCGTATTTT
GGTTCTCATG----------------TTGACACTCGGTTGACTTGTTTGTTTTGTTAGGCCATTATTTGTGGCAGCGTTG
GACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGGGGCATGTTTGAC
CAGAGGAGAGTAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGCGCAGCTTGGTGC
ATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTCCTTTCTACTCTATAGCACGTGATTCTGTTTTTTT-CCTTGTGATGT
GAAGTGAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTATTATGTCTTATT-CAGTGCTGCAG
TGTATGTTGAGGGTGAGATTGAGACTAGAGTCTACAATGATGACATCAATAATCTAGTG-AAAATCGTACCTGAGATCTG
TGTGCGGTATGATGGTAAGTTAATCTGAGGTTCAAGTATTTTC--TCTTTCCTTTGGCAATCTGTTTTGTTGT--AAACA
TTCGTTAGCCAAATAAACTAATGCAAATGTCTTAGCTGAGCACAAGCTACCTGAGTTATTTCTTGAAGAATTCCCTGCTG
ATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAATGCAGCTTTTGGTCAGAAAACAG
ACCTACCTAAAGGGAGTGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT--------CTGCCTGTGGA
AACAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCGCTC-------TCAGTATATTGTGCTATC
ATCTCTGAATTCATGTCATTTTCATTATTTACAGAATTTTTGGTTTTGTTCATTTC-CATTTGTATGATTTTGATGTATG
GGAAATTTAATCTTCTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAG
TAAGTGCAGTCTGTATCTCATTTTTTTT-TCTTATATAAGGGAAGGCATCATGGCATATACTCCCTCCGTTCGGAATTAC
TTGTCGCAGAAATGGATGTATGTAGACGTATTTTAGTTCTAGACACATCCATTTCCGAGACAAGTAATTCCGAACGGAGG
GAGTAGTAAATAAGTGCAGACCATCGGACAGGCCGTGTTGTTGTTCTTTTCAGTGCTCTTCGCTATGTCCGTGAACAGAC
TTGTGTGCATAAAGAATCACATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGG
GGAGGGGCTATTTTAGTTGCGACCTGAGGAACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCAGGGCA
ACTTTGCCAAAGCACTTTTATTAGGTCCATTGATAATAACTGGACTGGAGAACTGAAAGCCCTTGTAGATGCAAGCGGTG
CTTTCTCTGCCTTTTTGAGCGTATGGGGGCCTCTTCTGGTTGTTGAAATCGAGTTTGTATTGAGCTGCAGGAGAGAAA--
-CGGTCTATTGAGACCTCTGAAGATGCTTTTATTTTTCACAGCTACTAGTACTGATGCCCCGTGCTCGTAACAATGACCA
GTCTCAGTGTCTATTCATAA-ACTTGGCATCTTTGTTTCAAGCCCTACGTGCTAGCATACCATATCGAAGTTAGTTCGCT
CATATCTGAATTTACTTCTCTGCTGCAAAAATACAGATCCTGATGCTCCTGTCTCTTTTTGTGTTGGTCTGACTGGCCTG
TCTAGAGCGTTTCCATTTTCTGGTTGCTCTATCTTCTATTTTCATTTTTCTATGAGGTAAATACACTAGGAGTCATACAA
CTTACACGCGACAGTCAGTTTGGTGTATAAATTTATAAAATACGTGATTGCAGTCATTAAACTTGCGTGGACGTGCAAAT
ACGATTACATTTGCTTGAGTTGCATGCCAAGGCCCACTGTCAGTGACAAAACCCTCAGATTTTCTTTCAACTACGAACAA
AAGCCCATGGGGCCCACATGTCAGTGTACAGTATAAATAAATTTCGTTGGAAAAATATGAAGAGCGGGAGTTTTCTTTTA
ACTACGCAGAAAAGCCATGGGGCCCACATGTCAGTGTACAGTATAAATAAATTTCGCTGGAAAATGTAAAGAGCGGGAGT
TCAAACCCACGACCAGATGCAGAAATGCGGCCGTCCTTGCCACCGAACCTGATGATTCTTGATGCCAGGACTGCTAAATT
ATATATATCCTTTAGTTTAAGATCACTTTTTTTTGAATCCAAGTACACATTTAAGATGGGGCTTAGACTAGCAAACTGAC
TTGGACTTCCGAACTAATCAAACTAACCGTACTACACTAGCGCAAAAGGTCTTGAATTCCGAAATGGCAAAAAAAAGATC
GACAAATCAATGATTTTTTTAGATCAAATAAATTTTAAACTTAAAATTTATATAAAATAAAATATAGTGTGAAATGATTA
TACATATTTTTTTGGACAAATCAATGAATTTTTCATTTAAATTCAAGTAATTTTAAATTTAAAAATCTATATAAAAGAAA
ATATAGTGCAGAATGAATGTATGTATTTTTTTCTAACAAATCAACTAAAATTTTGTTTGAATTTAATAATCTGAAATTAA
AAAATCAAGATAAAAGAAAATATTAGTGCAGAATGAATGTACATAAGTTCTTTTGGACAAATGAAACATTTTTTGTTCAA
ATTTGAATAATTTTAAAATTTGGAACTCTAGATAAAAGAAAATATAGGTCAGAATGAATGTACGTAAAACTTTCTAACAA
ATCAATGAATCTTTTTTGAATTTGAATAATATTAAATTTAACAATCTAGATGAAATAAAACATAGTTAAGAATGAATGTA
TGCTAATTTTTGGACAAATCGGCATTTTTTGAATTTGAATCAATTTAGGTTTAATAATCTAGATAAAAATATAGTTCAGA
ATGAATGTACATAAATTTCTTTTGGACAAATCAATGAAAATTTTAATCGAGTTTGAAATTTTTTAAATTTTAAAATATAG
ATAAATGAAAATATAGTTCGGAATAAATGTAACATGATTTTTTTAAGTGAATTGAGAAAATTTCACTGACCCTCATTTAG
AAAATAAATTTATCTTCACCAGCTGACATTTTGTTTGTTGGTTAGACTAGCCATAGTGGAGAGTAAGTTACACTAGTAAC
ATAAACGCTTTTCTAGACTATGTTACTACCTTCATAGTGGGTAGTAACATATGTGTGGTATCATGCAAAGCTTTATTTAT
TAGGTTATAGACTCATATTGTATTGAGATATGTGATTGTATGGTAACTAGCTAAGTTACTCAATTATCTCCATCCTCATT
AACTCAGTGTCACATAAGCAAATTTACTGAGTTGAACCCAATGTTACTCCCGAAGTTAATCCTACTATGGTCAGTCTTAG
CCCGGCTCTCATTTATTCGTTTAAAACCAACTTTAATGTGTATACTGCTTAAAAGAAAAATAATCCTTAATGTGTGCTTC
GGTCGTAAAACATACTATAAAAGAGAGCCGTCCACATTGTGCACCAAGCATCTTCTGATTGGGTGGCCATGTCGTCGGCT
ATAGACCAACAGGTTGCGGGTTGCGCGCGACTTAATTTACACCGTCTGCTGACACATGGGACCCAACAGGCTTTTGTATG
AGGTTAAACAAAATCCAATTGTGTTTTTGCAAAAAAAATATCACGTGCATCCGCACCTCAGCTGGTACCAACCACTGACA
GTGGGGCCTCATCATGCTGGCGTGTTGTGCAGGCAACGTCCGCATACGGGAAATGTGATCGTATTTGCACGCTCGGACAA
GTTTGATGACTGCAATCATGTATTTTACAAGTTTGTGTGCCAAACTGACCGCCAGATGCAATTTCTAAGACTTCCGATAT
ATTTAGCTCTTTTTCTATGTACTCCCTTCGTCCTAATTTACATGCCATCTTCTTATTTCATGATTTAGCTTACTGCCAAT
TTGACCAATAATGTAAGAGTCATGTGTCATAAATATCATACTATTAGAAATAAAAAAAAATTGGGGGGGATAGAAATTCA
ATGGTATAGCTCTTTTGGTACTTAATAAATGTTTTATTGGTCAAAGTGATGGTCAAACTT-AAATTTGAAATGCGTGGGT
TCCACACAAACTTGGAC---------------------------------------------------------------
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>chr6D_1577
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---------------------------GTATGTGCTTTGTAC-CTATGGCTTGTGATTCAGTTTTCCA-CCTTGAGATAT
GAAATCAAAACTTCAGCTCATATTCTAAATTCACCAAGGATATACTGTGGTTATTATTATGTCTT-------TGCTGCAG
TCTACGTTGAGGGTGATACTGAGACTAGAGTCTATAACGACAACATCAATAATTAACTGAAAAAACATACCCGAGATGTG
TGTGCAACATGATGGTATGTTAATCTGAGGTTTGAGCATTTTTTT-C----CTATGGCGATCTGTTTTGTTTTAGAAATA
TTCATTAGTCAAATTTACTAATGCAAATGTGTTAGCTGAGCACGAGCTACCTGAGTTATTTCTTGAAGAACTCCCTGCTA
ATTTTTGTTCTCTTGAAATACCACACCCACCC-----------------CTATAAAACT-------------------AG
GCATACCAACAGGGACTAG--------CTCCTGTGGCTTTTCTAT-AAAGGAGAGACAACCG---GGAGCTGCTTGTGGA
GTCAAGGGCTCTTAACGTAGTTCTTCATGCAGCTTAATTTGGACTCC------TC-------TCAGTATATCATGTTATC
ATTTCCGAATCCATGGCATTCTCATTCTTTACAGAATTTTAGGTTTTGTTCATTTTTC-----------GTTCATGTATG
GGAAATTTAATCTTTTCAGGCAAGCTTCACTTGGTTCAATCTGGGGATAGTGATGTCGACAAATCACTGGAACAGTTATG
TAAGTGCAGTATGTATCTCTTTTTT-------------------------------------------------------
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>chr6B_1577
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---------------------------GTATGTGCTTTGTACTCTATGGCTTATGATTCAGTTTTCCA-CCTTGAGATAT
GAAATCAAAACTTCAGATCATATTCTAAATTCACCAAGGATATACTGTGGTTATTATTATGTCTT-------TGCTGCGG
TCTATGTTGAGGGTGATACTGAGACTAGAGTCTACAACAACAACATCAATAATTAACTG----AACATACCTGAGATGTG
TGGTCAACATGATGGTATGTTAATCCGAGGTTTGAGCATTTTTTT-C----CTATGGCGATCTGTTT-GTTTTAGAAATA
TTCATTAGTCAAATTTACTAATGCAAATGTGTTAGCCGAGCACGAGCTACCTGAGTTATTTCTTGAAGAACTCCCGGCTA
ATTTTTGTTCTCTTGAAATACCACACCCACCC-----------------CTATAAAACT-------------------AG
GCATACCAACAGGGACTAG--------CTCCTGTGGCTTTTCTGT-AAAGGAGAGACAACCG---GGAGCTGCTTGTGGA
GTTAAGGGCTCTTAACGTAGTTCTTCATGCAGCTTAATTTGGACTCC------TC-------TCAGTATATCGTGTTATC
ATTTCCGAATCCATGGCATTCTCATTCTTTACAGAATTTTAGGTTTTGTTCATTTTTC-----------GTTCATGTATG
GGAAATTTAATCTTTTCAGGCAAGCTTCACTTGGTTCAATCTGGGGATAGTGATGTCAACAAATCACTGGAAGAGTTAAG
TAAGTGCAGTCTGTATCTCCTTTTTTT-----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>chr6D_1597
--------------------------------------------------------------------------------
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-----------------------------------------------AGCATATGATTCAGTTTTCCA-CCTTGTGATAT
GAAATCAAAACTTCAGCTCAGATTCTTAATTCACCAAGGATATACTCTGGTTATTATTGTCTTAT-TT-CAGTGCTGCAG
TCTATGATGAGGGTGCTAATGAGACAAGAGTCTACAATGACAAGATCCATAATCAACTG-AAAAACATACCCGAGATCTG
TGTGCAACATGATAGTATGTTAACCTGTGGTTCGAGTATCTTTTTTC----CTTTGGTGACATGTTTGGTTGTAGAAATA
TTCGTTAGCAAAATAAACTAATGCAAATGTGTTAGCTGAGCATGAGCAACCTGAGTTATTTCTTGAAGAATTCCCTGCTA
ATTTGTGTTCTCTTGAAATACCCCACCATCCCTACCAAATGCAGCTTAACTAGAAAACT-------------------AG
GCCTACCTACAGGGACTAA--------CTCTTGTGGCTTTTCTAT-AAAGGAGAGACAACTG---GGACCTGCCTGTGGA
GTCAAGGACTC-TAACGTATTTCTTCATGCAGCTTAATTTTGACTCC------TC-------TCAGTATATGGTGCTATC
ATTTATGAATTCGTGGCATTCTCATTCTTTACAGATTTTTTGGTATTGTTCGTTTGTCATTTGTACGATGTTCATGCATC
GAAAAATTAATCTTTCCTCACAAGATTCACTTGTTTCAATCTGGGG----------------------------------
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---------------------------------------
>chr2D_2025
--------------------------------------------------------------------------------
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----------------------------TCCTGTGGCTTTTTGATAAAAGGAGAGACAACAGCTAGGAGCTGCCTGTCGA
GTCAAGGACTC-TAATGTAGCT-TTCATGCATCTTAATTTAGACTCCCCTCATTCTCAGTAGTCAGTAGATTGTGCTTTC
ATCTCTGAATTCATGACATTCTCATTATTTGCAGAATTTTTGGTTTTGTTCGTTTC-CATTTGTAAGATGTTGATGTATG
GGAAATGTATTATTTTCGGGCCAGATACACTTGGTTCAGTCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTCAG
TAAGTGCAGTCTGTATCTCATTCTTTTTCT----TATAAGGGAAGGCATCACGGCATA----------------------
--------------------------------------------------------------------------------
---TAGTAAATAAGTGAAGACCATCGGACAGGCAAC---GTTGTTCTTTTCAGTGCTCTCCGCTGTGTCCGTGATCAGAT
TTATGTGCATAAAGATGTGCATTAACCTGTAACATGTGTTCATCACATAAGATCATCATAACAACCTTCCTTTTGGCAGG
GGAGGGGCTATTTTAGTTATGACCTGAGGCACAACG---AGCAGGAGGAGTTGGCCAACTGGAGTGCTAGATTCAGGGCA
AGTTTGCCTAAGCACTT---------------------------------------------------------------
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---------------------------------------
>SNPs
---------------------------------SS----------------S-----------------S--S-------
-S--S--------------S-----S---------------------------SS---SS------------S------S
--------------SSS-SSSSS-------S-------S----------S-----------S--S----------S---S
-------S------------S------S-----------S-----------SS----------------SS-----S---
-------S---------------S--S------------------------SS-------------------S-------
-------S-----------------------------S---S--------------------------------------
---------------------------------------------------SSSSSS----S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S-------------------------S-------------------------
---------------------------S------------------------S---------------------------
--------------------------------------------------------------------------------
----------S-----S---------------------------------------------------------------
----------------------S----------------------S----------------------------------
------------------------------------S-------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------S-------------S---------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----------S-----S---------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------S-----S------------------------S------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----S--------------S------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------S-------------------------------S------------
------------------------------S--------S----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
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--------S--S------------------------------------------------------------S-------
-----S--------------------------S-S---------------------------------------------
--------------S----S---S------SS-------S----S----------S-------------SS---------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_179
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
TCGCAGTTGCTGTTTCTGG-------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>reverse_2097
--------------------------------------------------------------------------------
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----------------CGGGACTAGCTCTCCTGTTG--------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>forward_408
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCACCGCGATTT
TTCCTCTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------
>reverse_2464
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCTCCGTCCCACAATAT
AAGAAGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_749
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CCCAGTGATCAATTGAACCGG---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2724
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AGGGCTATTTTAGTTGCGACCT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_1086
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGGACAGCAAAGAAACCCAATC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2911
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TCTTCTGGCTGTTGAAATCGAGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
