>input_sequence_47007
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---------------------------------------------------------------------------ATGTC
CTGCTCCGTCGCCATCCCTAGCTCGCCGGTGTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCG
CCTCGCCCGAGTCCGTCTCCGT------GTCGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTG
CTGCGCGCTCAGATCCGCGAGGAGGCCTCCCCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGATCGGT
GCTGAAGAGGCGGCGGCCGGCGCCGCTCATGGTGCCGGTCGATGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCTGTGG
CCGCCGTGGAATCGGATCCGAGCAACGAGGTGGAGGAGGAGGGCGACGAGTTCGCGGCCTACTGCCGGAGAGGGAGGGGA
AGGAGAAGGGTGGAGATGGAGGACCGGCATGTGGCCAAGGTCGCGCTCGGTGGAGACCCCGAAGTGGTAAGCTCGCTCGA
TGCATCTTCTCTTCTCTCTCATGATTTTGTTTTGCACAATTTTTACGAAATATTTTTGATTTGACCTGACTG----AACC
CGGGATGGAAATTTCTTGCTGTTTTGTCTAATACTCCGAACTTTGTTAGAG---GTACTAAACTTTCTCGTTTACCCCGA
ACTTTGCAGGCGCTGTTTGCTGTATTCGATGGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAA
GTTCATGGCAGAGGTGGTGAGGAAGGTGGACGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGA
AGACGGACGAAGAGTTCCTTAAGAGGGAGGAGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAGAAGGGCGGCCTC
ACCGTGTCCAACACTGGAGATTGCCGTGCTGTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGATCACCGGGC
CTCCCGTGAGGATGAGAGGGAAAGAATTGAGAACCTGGTAAGTAGATATTGTATGCCTCAAATGTGTTCCATTATTTGTG
TGACAATTGTAGTTTGAAGGATGTGCACTTGCTAAATAAACTAGACCTTGTTTCAATTTGATAATAAAATTCTGTAGTTG
TATGCAGTTAGTGGATAACTCTTGTTGCTTGGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAA
AATTTGAGTAATCGTGAGCAAAATTATGCAATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGG
CGGGTTCGTTGTGAACAACCGAGGGACATGGCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACC
TCAAGCAATGGGTGGTGGCTGATCCAGATACCAGGACGCTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCTTCT
GATGGCTTGTGGGATAAGGTGGATAACCAGGAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAAACTTC
TCGCATCGCCGCCTGCAGAAGGCTTGTCGAAACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATAC
AATTGCAGAAGTTCTCAGGTTCTTCTTAA---------------------------------------------------
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----------------------------------------------------------
>chr4B_1_TraesCS4B01G194000
ATTTTTTCCGGAAAAAATCTAGCCCAATAATTGCACGAGTAAATGTGCCAGTTGTAAACTAGCATGTGCCGACAATACTA
TCTTACCATATATTTCAAAACGGAGAAAGCACATCACGACACATAAAATACTATATTAATCT----------ATATCTCT
ATCCACTAACATAAGATTTCATCTTTCACTCAGTGTTCTCTCCAACACCCCTTCGCCCAATCTTCCACCCTCAATC--AT
TTTTTTCTGGTTTTTC-ATCCCCTTTTGAGTTTCATCAAACTACATCATCTATGGTATAGCAATAAATTCACGGTCCATA
TATAATTTGTTTTTATGGTAAAATCCAGTAC----TAGACATCTTTCGTAGCCCAATAAATAGTAATAAATTCATGATAC
ATAAGCAAATGAATATAAATGAATCTCCTATATTTGGCAACCCAATAAAGGAGATAAATCATGGGCACATACCTATTTTA
T-CAGTT-TAAGAAATAGCTGGAAATC-TATATTTTATAACCAAAATATGATTTTATTTTATCTATTTAGTTTGCACCAA
TATTTCTAAAACACTTGCC-------------------------CCCCGTGACAACGCACGAGCATATACCTTATATAT-
--------------------------------------------------------------------------------
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-------------------------------------------------------------------ATACAACTAAAAT
TCGATAGACAATGTTTCACAATCCACTACTATGGCAGTAGGGAGTAGTACTATTATTTTCTTCAAGGAAGGGAAGCTTGC
CCAATAATTGCACCAGCAA-TTTTCTACTTGTGCCAGCGGTGCTACTCCGTCTGCAACAGAAAAAACATTAAAAAACAAT
GGTCCTCCAGTCCAGTTCACAATTGCGAATTGCCCCTAGGGCCAAGCCAGTCCAGTTCCCACGGGAGCGCCTC-CCCCCG
CCCGCGACGCGTAGTGGCCACCGTATATAAGCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAA
TCGAGGAAAAGCGAGGAGGCGTAGGAGCCGCAGCGAAGACCCCGTCCGTCTCCCAAGGCCGAAGAAGCCCTCGCCATGTC
CTGCTCCGTCGCCATCCCTAGCTCGCCGGTGTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCG
CCTCGCCCGAGTCCGTCTCCGT------GTCGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTG
CTGCGCGCTCAGATCCGCGAGGAGGCCTCCCCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGATCGGT
GCTGAAGAGGCGGCGGCCGGCGCCGCTCATGGTGCCGGTCGATGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCTGTGG
CCGCCGTGGAATCGGATCCGAGCAACGAGGTGGAGGAGGAGGGCGACGAGTTCGCGGCCTACTGCCGGAGAGGGAGGGGA
AGGAGAAGGGTGGAGATGGAGGACCGGCATGTGGCCAAGGTCGCGCTCGGTGGAGACCCCGAAGTGGTAAGCTCGCTCGA
TGCATCTTCTCTTCTCTCTCATGATTTTGTTTTGCACAATTTTTACGAAATATTTTTGATTTGACCTGACTG----AACC
CGGGATGGAAATTTCTTGCTGTTTTGTCTAATACTCCGAACTTTGTTAGAG---GTACTAAACTTTCTCGTTTACCCCGA
ACTTTGCAGGCGCTGTTTGCTGTATTCGATGGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAA
GTTCATGGCAGAGGTGGTGAGGAAGGTGGACGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGA
AGACGGACGAAGAGTTCCTTAAGAGGGAGGAGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAGAAGGGCGGCCTC
ACCGTGTCCAACACTGGAGATTGCCGTGCTGTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGATCACCGGGC
CTCCCGTGAGGATGAGAGGGAAAGAATTGAGAACCTGGTAAGTAGATATTGTATGCCTCAAATGTGTTCCATTATTTGTG
TGACAATTGTAGTTTGAAGGATGTGCACTTGCTAAATAAACTAGACCTTGTTTCAATTTGATAATAAAATTCTGTAGTTG
TATGCAGTTAGTGGATAACTCTTGTTGCTTGGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAA
AATTTGAGTAATCGTGAGCAAAATTATGCAATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGG
CGGGTTCGTTGTGAACAACCGAGGGACATGGCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACC
TCAAGCAATGGGTGGTGGCTGATCCAGATACCAGGACGCTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCTTCT
GATGGCTTGTGGGATAAGGTGGATAACCAGGAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAAACTTC
TCGCATCGCCGCCTGCAGAAGGCTTGTCGAAACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATAC
AATTGCAGAAGTTCTCAGGTTCTTCTTAACTTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACG
GAGGGGTGTATCGGGCCGGGCAGGATAGACTGATACCCATATGTTAATTTGCAAGCAAAATTTTAGGTGTCGTTGCACCA
TTTTGCAAGCATTCGACTCGTTTCGAAATACCATTCTTTATGTACTTAATTTAATTCCATTCATTCATTCTTTGATTCTA
ATGTAATAAGGCGGGGGTTAATACTCACTTCATACTACTCCCTCCGTTCCTAAATATTTGTCTTTTTAGAGATATCAACA
AGTGACTACATACAAACCAAAATGGTTGAATCTACAGTTTAAAATATGTCTACATACATCCGTATGTTGTAACCATTTGA
AATGCCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTAAAT
GGATTCAGCATAATTGCCTCTTTGCTTATTTTCACCAATATTCCACTCTTGAAGTGCATGTGATTTATATTCGTCAAGAA
GCCGACAGCCCGACACATCAAAATAATTTGCAAATATAGAGCAAGAAGGTTCCAAAACTTAATGTTGACACAACTTTTTT
TGCACATGAGGAATTTCAGTTCTGCCCATTGTGAGGAATTTCCAAATTCCTCTTAACAGAATGACTGAGTTTGCCTGAAA
CAAAATGGAGGAA-CCGGACCCAAGATTCACAAAACTTAATGTTGACGCAACTTTTTTTGCACATGAGGGAATTGGTGCA
ACGACAGCTATTCTCAGAG---ACGAGGGAAATTTTATTGCGGCTCACTGCAGATTCGTTGCTATTGCAGCCGATGCTAT
CACCACGGAGGCAATGGCCATGAGAGATGGATTACTA-------------------------------------------
--------------------------------------------------------------------------------
GATATCGGTTCATCTATTGGAAAGGTCATCTTTGAGCATTG----------------------GCGCATGTGCTAGCTAA
TCATAGTTATTGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTTG
>chr4D_1
ATTTTTCTTCGGAAAAATCTAGCCCAATAATTGCACAAGTAAATATGCCAGCTATAAATTGGCATGCGCTGACAGCACTA
TCTTACGATATATTTCAAAACGGAGAAAGCATATCGCGACACATAAA-TACTACATTAATCTACAAAAGAATATCTCTAT
CTCTGCTAATATAAGGTTTCATCTTTGACTAAGTTTTCTCCCCACCACCCCTTCGCCCAATCTTCCACCCTCCATCAAAT
TTTTTTCTGGTTTTTTTATCCCCATTTGATTTTCATCAAAGTAGATTATCTATGGTGTAACAATAAATTCACGGTCCACA
TATAACTTGTTTTTATGGTAAAATACGGTACCTATTAGACATCTTTGGTAACCTAATAAATAGTAATAAATTCATGATAT
GGAAGCAAATAAATATAAATGAATCTCTTATATTTGGCAACCCAATAAAGTAGATAAATCATGGGCACATACCTATTTTA
TTGGTTTATAAGAAATAGCTCGAAAATATATATTTTATAACCAAAATATAAACTTGTTTTCTCTATTTGTTTTGCATCAA
GTTTTGTCCCGTATGATCTCTTATATTGTGTTAAAAGCATTTGACCCTGTGACAACGGACGGACATATATCTTCTTTTTA
GAACACAATACAAACACAACCACTTATATATAGACGCATACACTTATCTCTATGAACACACATGCATACCCTACCCCAAT
GAACATCTCTGAGAGACTGAGCCGGCATATCATCTTCAGATTGACGAAGTCACCACAGGCAACCCGTAGTCGACAGGAAT
GTCTCCTCTCACTAAACGTGCATGGCCAGAGATCCTGAAATAAATTCAGAAATAATGCAAGCACTAGGATTTGAACCCTA
ATGGGCTGGGATACCACTGTCGTGCTAACCATGCAACCACATGTTGGTTCGCCACGGCATATACATAATACAACTAAAAT
TGGCTAGA-AATATTTCACGATTC---ACTATGGCACTAGGGAGTAGTACTATTAGTTTCTTCAAGGAAGGAAATCTTGC
CCAACAATTGCACCAGCAAACTTTCTACTTGTGCCAGCGGTGCCACTCCATCTGCAACAGAAAAAACATTAAAAAACAAT
GCTCCTCCAGTCCAGTTCACAATTGCGAATTGCCCCTAGGGCCAAGCCAGTCCAGTTCCCACGGGACCGCCTCCCCCCCG
CCCGCGACGCGTAGTGGCCACCGTATATAAGCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAA
TCGAGGAAAAGCGAGGAGGCGTAGGAGCCGCAGCCAAGACCCCGTCCGTCTCCCAAGGCCGAAGAAGCCCTCGCCATGTC
CTGCTCCGTCGCCATCCCCAGCTCGCCGGTGTTCTCTCCGTCGCGCCGCCCGCTCTCCTGCAAGG------CCGCCTCCG
CCTCGCCCGAGTCCGTCTCCGT------CTCGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTG
CTGCGCGCCCAGATCCGCGAGGAGGCCTCCCCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGTCGCCGCCGGGTCGGT
GCTCAAGAGGCGGCGGCCGGCGCCGCTCATGGTGCCGGTCGACGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCCGTGG
CCGCCGTGGAGTCGGATCCGAGCAACGAGGTGGAGGAGGAGGGCAACGACTTCGCCGCCTACTGCCGGAGAGGGAGGGGG
AGGAGAAGGGTGGAGATGGAGGACCGGCATGTGGCCCAGGTCGCGCTCGGTGGAGACCCCCAAGTGGTAAGCTCGATCGA
TGCAATTTCTCTTCTCTGTCATGAATTTA-TTTGCACAACTTCTACGAAATGTTTTTGATTTAC-----CTG----AACC
CGGGATGGAAATTTCT-GCCGTTTTGTCTAAAATAAAA----TTGTTAGAGGTAGTACTAAACCTTCTCGTTTACCCCCA
ACTTTGCAGGCGTTGTTTGCTGTATTCGATGGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAA
GTTCATGGCAGAGGAGGTGAGGAAGGTGGAAGGTGGTGACAGTGATGAAATTGAGGGGGCTGTGAAGAAATGTTACCTGA
GGACGGACGAAGAGTTCCTCAAGAGGGAGGAGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAAAAGGGCGGCCTC
ACCGTGTCCAACACTGGAGATTGCCGTGCTGTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGACCACCGGGC
CTCCCGTGAGGATGAGAGGGAAAGAATTGAGAATCTGGTAAGTAGATCTTGTATGCTTCGAATGTGTTTCATTATTTGTG
TGACAATTGTAGTTTGAAGGATGTGTACTTGATAAATAAACTAGACCTTGTTTCAGTTTGATAATAAAATTCTGTAATTG
TATACAGTTAGTGGATAATTCTTGTTGTTTGGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAA
AATTTGAGTAATCATGAGCAAAGTTTTGCAATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCTATTAATTTTCAGGG
CGGGTTCGTTGTGAACAACCGAGGGACATGGCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGTGATGCACACC
TCAAGCAATGGGTGGTGGCTGATCCAGATACCAGGACACTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCCTCT
GATGGCTTGTGGGATAAGGTGGATAACCAGGAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGACAAGGTTTC
TCGCATGGCCGCCTGCAGAAGGCTTGTCGAAACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATAC
AATTGCAGAAGTTCTCAGGTTCTTCTTAACTTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACA
GAGTGGTGTATCGGGCCGGGCAGGATAGACTGATACCCATATGTTAATTTGCAAGCAAAATTTTAGGTGTGGTTGCACCA
TTTTGCAAGCATTCGACTCTTTTCGGAATACCATTCTTTATGTACTTAATTTACTTCCATTCATTCATTCTTTGATTCTA
ATGTAATAAGGCGGGGGTTAGTACTCACTTCATACTA-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTAAAT
GGATTCAGCATGATTGCCTCTTTGCTTATTTTCACCAATATTCCACTCTTGAAGTGCATGTGATTTATACTCGTCAAGAA
GCGGACAGCCTGACACATCAAAATAATTTGCAAATATAGAGCA-GAAGGTTCCAAAACTTAATGTTGACACAACTTTTTT
TGCACATGAGGAATTTCAGTTCTGCCCGTTGTGAGGAATTTCCAAATT-CCTCTAACCGAATGACTGAATTTGCCTGAAA
CAAAATGGAGGAAACCGGGCCCAAGATTCACAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGAATTGGTGCA
ACTGCAGCTATTCTCAGAGACAACAAGGGAAATTTTATTGCGTCCCACTGCAAATTCATTGCTATTGCAGCCGATGCTGT
CACCACGGAGGCAATGGCCATGAGAGATGGATTACTATTAGCTAATTCCCTTTGATTTAATAGGATAGAATCGGAATCT-
ATTCCCTTCAAGTCATTAATTTCTACTCTGGACAAACAAGATGGAGGGATGGAACTGCAGCCTTATTTGCTGAATGCGTA
GATATCGGTTCATCTATTGGAAAGGTCATCTTTGAGCATTGCTTACGATCATGTAATAATGCAGCGCATGTGCTAGCTAA
TCATAGTTATTGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTT-
>chr4A_11
----------GAAAAAATCTAGCCCAATAATTGCATGAGTAAATATGCTAGCTGTAAATTGGCATGTTCCGACGGTACTA
CCTTACGATATATTTCAAAACGGAGGAACCATATCGCGACACATAAA-TACTATATTAATCTCT------ATATATGTAT
CTCCGCTAACATAAGGTTCCATCTTTCACTTAATTTTCTCCCCACCACCCTTTCATCCAATCTTCCATCCTCCATC---T
TTTTTTTTGGTTTTTC-ATCCTCTTTTGATTTTCATCAAACTAGATCATCTATGGGGTAGCAATAAATTCACGGTCCATA
TATAGTTTCTTTTTATGGT-AAATCCGGTACCTATTAGACATCTTTGGTAACCCAATAAATAGTAATAAATTCATGATAC
ATAAGCAAAATTATATAAACGAATCTCTTATATTTGGCAACCTAATACAGCAGATAAATCACGGGCAAATACCTATATTT
ACCACTT-TAAGAAATAGCTGAAAAATCACGTCGACGCCAGTGGTCGTTCGGTGGTATATGGAACCTGATGTAATTTTTA
TTATGTTTGAGGTGTTTGGTACTTCCGGTGAATCCTTATAATAGATCTAATCCTTTTCGCAAAAAGA-------------
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-------A-AAAGTTTCACGATTCACTACTATGGCACTAGGGAGCAGTATA---ATTTTCTTCAAGGAAGGAAATGTTGC
CCAATAATTGCAGCAGCAAATTTTCTACCTGTGCCAGCGGTGCCACTCCATCTGCAACAGAAAAAACATTAAGAAACAAT
GGCCCTGCAGTCCAGTTCACAATTGCGAATTGCCCCTAGGGCCAAGCGAGTGGAGTTCCCACGGGAGCGGCTCCC-----
CCCGCGACGCGTAGTGGGCACCATATATAAGCCCGTTCAAACGGCCGTTTGCCCCAGACCCATCCAAACCTAATCACAAA
TCGAGGAAAAGCGAGGAGGCGTAGGAGCCGCAGCCAAGACCCCGTCCGCCTCCCAAGGCCGAAGAAGCCCTCGCCATGTC
CTGCTCCGTCGCCATCCCCAGCTCGCCGGTCTTCTCCCCGTCGCGCCGCCCGCTCTCCTGCAAGGCCGCCTCCGCCTCCG
CCTCGCCCGAGTCCGTCTCCGTGTCCGTCTCGTCCCCGGCGCCCTCCACCGCCGGCTCGCCGCTCCGGCCCTTCGGGCTG
CTGCGCGCCCAGATCCGCGAGGAGGCCTCCCCGTCGCCTAAGACGTCCTCTGCGGCCCCCTCCGCCGCCGCCGGGTCGAT
GCTCAAGAGGCGAAGGCCGGCGCCGCTCATGGTGCCGGTCGACGGCGCCGCGGCCGCTGCTGCCGCGGCGGCGGCCGTCG
CCGCCGTGGAGTCGGATCCGAGCAACGAGGTGGAGGAGGAGGGCGACGAGTTCGCGGCCTACTGCCGGAGAGGGAGGGGG
AGGAGAAGGGTGGAGATGGAGGACCGGCATGTGGCCCAGGTCGCGCTCGGTGGAGACCCCCAAGTGGTAAGCTCGCTCGA
TGCATCTTCTCTTCTCTGTCATGAATTTGTTTTGCACAATTTTTACAAAATATTTTTATTTGAC-----TTGACTAAACC
CGGGATGGAAATTTCTTGCCGTTTTGTCTAATATAAAA----TTGTTAGAG---GTACTAAACTTTCTCGTTTACCCCCA
ACTTTGCAGGCGTTGTTTGCTGTATTCGATGGCCACGGCGGAAAGAACGCGGCAGAGTTCGCTGCCCAAAATATGCCCAA
GTTCATGGCAGAGGAGGTGAGGAAGGTGGACGGTGGTGACAGTGATGAGATTGAGGGGGCTGTGAAGAAATGTTACCTGA
AGACGGACGAAGAGTTCCTCAAGAGGGAGGAGAGCGGGGGAGCATGCTGTGTCACTGCATTGCTCCAGAAGGGCGGCCTC
ACCGTGTCCAACACTGGAGATTGCCGTGCTGTCCTCAGCCGGGCAGGAACGGCCGAGGCACTCACCTCTGACCACCGGGC
CTCCCGTGAGGATGAGAGGGAAAGAATTGAGAATCTGGTAAGTAGATCTTGTATGCTTCGAATGTGTTTAATTATTTGTG
TGACAATTGTAGTTTGAAGGATGCGCACTTGATAAATAAACTAGACCTTGTTTCAGTTTGATAATAAAATTCTGTAATTG
TATACAGCTAGTGGATAATTCTTGTTGCTTGGTTGCACATAGCAATTGTCCTGTGCTTATACAATGGAATAGATAGCTAA
AATTTGAGTAATCATGAGCAAAATTTTGCAATATTTCAGTTCTCTGTGACTTATGTGCTCTATCCCATTATTTTTCAGGG
CGGGTTTGTTGTGAACAACCGAGGGACATGGCGAGTGCAGGGCTCCTTGGCAGTGTCAAGAGGCATCGGCGATGCACACC
TCAAGCAATGGGTGGTGGCTGATCCAGATACCAGGACACTCCTTGTTGACCCACAGTGCGAATTCTTAGTACTTGCCTCT
GATGGCTTGTGGGATAAGGTGGATAACCAGGAAGCCATAGACATCGCCAGGCCTCTCTGCATCGGCAATGATAAGGCTTC
TCGCATGGCCGCCTGCAGAAGGCTTGTTGAAACCGCGGGTTCCAGGGGGTCTACCGATGACATCAGTGTTTTGATCATAC
AATTGCAGAAGTTCTCAGGTTCTTCTTAACTTGCCATTGCTGGAGGAACTGGACTCAAACTGTAGGAAGTAGCGCTAACA
GAGTGGTGTATCGGGGTGGGCAGGATAGACTGATACCCATATGTTAATTTGCAAGCAAAATATTAGGTGTGGTTGCACCA
TTTTGCAGGCATTCAACTCTTTTCGTAGTACCATTCTTTATGTACTTAATTTAATTCCATTCATTCATTCTTTGGTTCTG
ATGTAATAAGGCGGGGGTTAGTACTCACTTCATACTA-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GAAGAGACTATTGTTGTATGTACATGGTTGACTGGGTACAT
GGATTCAGCATAATTGCCTCTTTGCTTATTTTCGCCAATATTCCACTCTTGAAGTGCATGTGGTTTATGTTCGTCAAGAA
ATCGACAGCC-GACACATCAAAATAATTTGCAAATATAGCGCATGAAGGTTCCAAAATTA--------------------
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>chr6A_3239
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------------ATCTCAGTCCTGTCCATTGTGAGGAATTTCTAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAA
CAAAATGGAGGAAACCGGACCCAAGATTCATAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCA
ACTGCAGCTATTCTCAGAGACAACAGGGGAAATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTAT
CACCACGAAGGCAATGGCCATGAGAGATGGATTACTATTCGCTAATTCCCTTGGTTTTAGTAGGATAGAAGTGGAGTCTG
ATTCCCTTCAAGTCATTAATTTCTGCTCTGGACAAACAAGATGGTGGGATGAAGCTGCAGTCGTATTTGCAGAATGCATA
GATATTTGTTCTTCTATTGGAAAGGTCACCTTTAAGCATTGCTTACGATCATATAATAATGTAGCGCATGTGCTAGCTAA
TCATAGTTATCATAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCTCGATTTCTTG
>chr2A_3239
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------------ATCTCAGTCCTGTCCATTGTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAA
CAAAATGGAGGAAACCGGACCCAAGATTCATAAAACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCA
ACTGCAGCTATTCTCAGAGACAACAGGGGAAATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTAT
CACCACGGAGGCAATGACCATGAGAGATGGATTACTATTCGCTAATTCCCTTGGTTTTAGTAGGATAGAAGCGGAGTTTG
ATTCCCTTCAAGTCATTAATTTCTGCTCTGGACAAACAAGATGGTGGGATGAAGCTGCAGTCGTATTTGCAGAATGCATA
GATATTTGTTCTTCTATTGAAAAGGTCACCTTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAA
TCATAGTTATCGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTTG
>chr7D_3239
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------------ATCTCAGTCCTGTCCATTGTGAGGAATTTCCAAAATGCCTCTAACCGAATGACCGAG-TTGCCTGAAA
CAAAATGGAGGAAACCGGACCCAGGATTCATAACACTTAATGTTGACGCAGCTTTTTTTGCACATGAGGGCATTGGTGCA
ACTGCAGCTATTCTCAGAGACAACAGGGGAAATTTTATTGCGGCTCACTGCAAATTTATTGCTATTGCAGCCGATGCTAT
CACCATGGAGGCAATGGCCATGAGAGATGGATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTG
ATTCCCTTCAAGTCATTAATTTCTGCTATGGACAAACAAGATGGTGGGATGAAGCTGCAGTCTTATTTGTAGAATGCATA
GATATCGGTTTATCTATTGGAAAGGTCACCTTTAGGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAA
TCATAGTTATCGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTTG
>chr2B_3242
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---------------TCAGTCCTGTCCATTGTGAGGAATTTCCAAAATGCCTCTAACCGGATGACCGAG-TTGCATGAAA
CAAAATGGAGGAAACCGGACCCAAGATTCATAAAACTTAATGTTGATGCAGTTTTTTTTGCACATGAGGGCATTGGTGCA
ACTACAGCTATTCTCAGAGACAACATGGGAAATTTTATTGCGGCTCACTGCAAATTCATTGCTATTGCAGCCGATGCTAT
CACCACGGAGGCAATGGCCATGAGAGATTGATTACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCGGAGTCTG
ATTCCCTTCAAGTCATTAATTTCTGCTCTGGACATACAAGATGGTGGGATGAAGCTGCAGCCTTATTTGCAGAATGCATA
GATATTGGTTCATCTATTGGAAAGGCCACCTTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAA
TCGTAGTTATCGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTTG
>chr5D_3242
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---------------TCAGTCCTGTCCATTGTGAGGAATTTCCAAAATGCCTCTAACCGAATGGCCGAG-TTGCCTGAAA
CAAAATGGAGGAAACCGGACCCAAGATTCATAAAACTTAATGTTGACGCAGGTTTTTTTGCACATGAGGGCATTGGTGCA
ACTGCAGCTATTCTCAGAGACAACAGAGGAAATTTTATTGCGACTCACTGCAAATTCATTGCTATTGCAGCCGATGCTAT
CACCACGGAGGCAATGGCTATGAGAGATGGATAACTATTCGCTAATTCCCTTGGATTTAGTAGGATAGAAGCAGAGTCTG
ACTCCCTTCAAGTCATTAATTTCTGCTCTGGACAAACAAGATGGTGGGATGAAGCTGCAGTCTTATTTGCAGAATGCATA
GATATTTGTTCATCTATTGGAAAGGTCACCTTTAAGCATTGCTTACGATCATGTAATAATGTAGCGCATGTGCTAGCTAA
TCATAGTTATCGTAATAAGTCCTCTTTTAGTTGGTTGGACGAGCCTCCCGATTTCTTG
>SNPs
------SSSS----------------------------------S------S------S-S-------------S-----
------S------------------------S---S-----------S------------------------------S-
S---S----------S--------------S---S-----S---S---------------------------S-------
-----------------------------S-------------S------------S-----------------------
--------------------------S-------------------S---S-----------------------------
----------S----------------S----------------------S-----------------------------
----S--------------------SS----------------------S-S---S----S--------S------S---
-S---S-SS-SS-S--S-S----------------------------S--------------S------S---S-S-S--
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-S-S----S----------S--S-------------S----------------------------------S--S-----
-------------------------------------------S-----S------------------------------
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----------------------------------S---------------------------------------------
------------------S-------------------------------------------------------------
----------------------------S---------------------------------------------------
--------S-----------------------------------------------------------------S-----
---S--------------------------------------S--------------------------------S----
----------S--------------------------------------------------------------------S
------------------------------------S-----------------------S-------------------
-----------------S------S-------------------------------------SSSSSSS-----------
-------------------S-------------SSSSSSSSS------------------------------------S-
------------S-------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------S-------------S--------S--S--------S-----------
-------------------------------S-----------------------S--------------------S---
---S--------------S-------------------------------------------------------------
-------------S-----------S------------------------------------------------------
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-------------------------------------S--------------------------------------S---
--------------------------------------------------------------------------SS----
------S-------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---S------------------------------------------------------------------S---------
-------------------S-----S------------------------------------------------------
--------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
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----------S--------------------------------S------------------------------------
------------------------------------------------S-SSS----S----------------------
--------------------------------------------------S-----------------------------
--S---------------------S---------------------------S----S----------------------
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>forward_233
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------------------------------------------------------GCCCAATCTTCCACCCTCA-------
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>reverse_1821
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------------------------------------------------------------GAAGTGGTAAGCTCGCTCGA
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>forward_630
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------------------------------------------------GTGACAACGCACGAGCATATAC----------
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>reverse_2758
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-------------------------------------GCTCCTTGTTGACCCACAGT-----------------------
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>forward_2095
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---------------------------------------------------------------------------CCCAA
GTTCATGGCAGAGGT-----------------------------------------------------------------
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>reverse_3384
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-----------------------AGGAACGGAGGGAGTAGAAGA------------------------------------
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