>input_sequence_46911
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-------------------CTATAAATATCTCGATGTTTTGCACCAACCC-----AGTTCGCATCTCAACGATAAACTTT
CACTTCGCCTCTCTCCCTCGGTCCCTCCCAAGTCCCATCCCCACCAAGAAGTTTCAAGAAACTCAAGAACCTCTCCTCCC
ATGGGGGTGCCGCTGCCGGAGTCGAGGTGGCGGCCGTGGGCTGAACTCCCCGAGAGGTACCTCAGCGACATCATCCGCAA
CCTCCCGTGCATCCTCGACCACGCCCGCTTCTCCGGCGTCTGCACTAGGTGGCGCGAGACGGCGCGGCCGAACCCGCCGA
GGTTCCCGTTCCCGTGGCTGATGATGCCATCCACCGCCGCGACCTCCTTCTTCTGCGTCGCCTGCGGAGCGACCCACCAC
CGCCCCAGGCTCCCCGCGGACGCCCGCGGCGCGCGCTTCTGCGGCTCTTTCCCGGGCGGCTGGCTCGTCGCCGAGCTCCC
GTGGCCGCACGGCCACTACGCGTTGCTCAACCTCCTCACCGGCGCGCGCGTCCCCCTCCCGAGGCTCCTCGCCGTCCCTT
GCCACGGTGGCGGCAAGATGTGCCCCGTCGTTCTCCACGCCGTCACCCTCTCCGCCGCGCCGTCCGTCGAGCCCGGCCCC
GGCGAGCCCTACTACGCCGCCGCCATAGTGGCTGGCCAGTCCAACATCGCGTTCTGGTGCCCGCGCGCCGGGAACTGCTG
GTTTCCGCCGATCTTCTCGTCGGACGCCAGCGACGAATCGTGGCACGATTTCTTGCCCAAGGACAGGATCGAGGACGTGA
TATACTTCTCCGGCAA------GTACTTCGTGGGCTTCTACGTCCTCACCAACGAGGAGGACCTCCTGATGTTCCGGCCG
AAGCCCGACGGCGACGGAGCGCAGCTCTCCACGTTCACGGTGCGCTACAGCTTCCCCGGCCACCGCGCGGCCGAGCCGGC
GCCGGGGCAGACGGTCTCCCGCTACCTCGTCGTGTCCCGCGGAGAGCTGCTGATGATCGTGAGGTTCGCCGGCCCCGAGG
AGCGCACGAGGTTCGACGTGCTCGTGCTGGAGGAGAAGAAGATCGTCGGGGGAGCGGACCACAACGACCCGCCCCGAGTC
TTGGCTTCTTGGAGACGGTGCTGCAGCGCGGCGACCCTCAGCGGCCGGAGGATCTTCCTCGGGCGGTGCTGCTCCGTGGC
CGTCGACGTGGGGTACCCCTTCCCGCTCTACATCTACTTCCTGGACGACGGCAGGAGGTCCCACGGCGCCCTCCCGACGG
CCGGGAGCCCGCCGTACCCCTGCAGCGAGACCGGCGGGTTCTGGTTCTTCAACAAGGGCATCGTGCGCTGCCTCCCGCGA
GAGCCTCCGTCGGACTGCTCGCCGTGGATTTGGTTCTACCTGTCCGACGAGACATTCCGGGCCGGCGTGCCTCCGCCTGC
AACTCCGGCTTGCGGCTGGGGGGTCGACACTGACAGTGAGTAGTGACGGCACATTATCTGCAGCAGGACAGAATTCGAAC
TACGTACATGTAAATCTACTGTCCCGTCAGTTCTTCATCCCTGCTTTGGTAAGGTCTCAAATGTTTTGATTTGATTCTTC
ATCCTCGCCGAGGATTTGCTTCATTGTTCT--------------------TCATCATAAGAGATGCATGA----------
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--------------------------
>chr6D_1_TraesCS6D01G156000
TTAAAATCATTCATATTTCTTAGACAAAAAAATCTGATTTGAATTTTTTTTTTATATTTGAACTCTTGGCGAAGAGACCT
TTAAAACATGACTGGCCTTCAATGTATTTCGAACGAGTTTAAAAAAATCATGAAACATATTTCACAAAAATCACATATAT
TTCAA--TTC-CAT--TTTTT-AAAT-AATATATTTCGCTGTTTTGAAATAAGTTGTTACATAATTTCAAATAATCTATT
ACAGAAGTTGACATTTCAGTTTCATATTGTTT--TCATTTTCAGGACCCACATTTCACTTTTCACT-A-CTTGTTTCAC-
-AAAAATCACATGTATTTCATTTCCACATTTGGGAAATAAAATATTTCACTCTTTTAAATAG-AATTGTTACACATTTGC
AAATAATCAATTTCACAAGTTAACAATTTAGTTTCATA--TTATTTTCACTTTCAGAACACACTTTTCACTTTCCACT--
------GGCTTCTTTCACAAAAGCCACATCTATTTCAATTGCATATTTTTGAATGAT----ATATTTCACTCTTTTGAAA
TAAAT-ATT-ACACATTTTAAAATAATCAATTTCACAAGTTGATATTTCAGTTCCATATT-----ATTTTCATTTTTGGA
ACCCACATTTCACTTTTCACTG-TGTGTTTCAC-AAAGATCACATCTATTTAAATTGCACATTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCAAAATAACA
TATTTC-ACTTTTTTGAAATAAAT-TGTTTCACAAATCGGCCGTTTGAGGTGGATGGTTTTGACCTCGCCAGCTCCACGC
TGGTGGTGTTCTAGGTAATCAAAGGAGTTCTGCTGCGAGATCGGTGTGGAAATTTTTTGATGGGTGAATGGTTAGCGGTA
TTGGATTGTTGGTGTTGCAAGGTACTTTAACCATGTTGCAAAAGTGGT---------------TGTGTTTTTGCATTGTT
GTATGCATCTTTTGTTGCATATATAGGTTCGTCCCTATGTTGCATATTTTGTGAAAATCTATTCTGAACGATTGGGATTT
GCAGCATATGCAATTTTTTCTATAAATATCTCGATGTTTTGCACCAACCC-----AGTTCGCATCTCAACGATAAACTTT
CACTTCGCCTCTCTCCCTCGGTCCCTCCCAAGTCCCATCCCCACCAAGAAGTTTCAAGAAACTCAAGAACCTCTCCTCCC
ATGGGGGTGCCGCTGCCGGAGTCGAGGTGGCGGCCGTGGGCTGAACTCCCCGAGAGGTACCTCAGCGACATCATCCGCAA
CCTCCCGTGCATCCTCGACCACGCCCGCTTCTCCGGCGTCTGCACTAGGTGGCGCGAGACGGCGCGGCCGAACCCGCCGA
GGTTCCCGTTCCCGTGGCTGATGATGCCATCCACCGCCGCGACCTCCTTCTTCTGCGTCGCCTGCGGAGCGACCCACCAC
CGCCCCAGGCTCCCCGCGGACGCCCGCGGCGCGCGCTTCTGCGGCTCTTTCCCGGGCGGCTGGCTCGTCGCCGAGCTCCC
GTGGCCGCACGGCCACTACGCGTTGCTCAACCTCCTCACCGGCGCGCGCGTCCCCCTCCCGAGGCTCCTCGCCGTCCCTT
GCCACGGTGGCGGCAAGATGTGCCCCGTCGTTCTCCACGCCGTCACCCTCTCCGCCGCGCCGTCCGTCGAGCCCGGCCCC
GGCGAGCCCTACTACGCCGCCGCCATAGTGGCTGGCCAGTCCAACATCGCGTTCTGGTGCCCGCGCGCCGGGAACTGCTG
GTTTCCGCCGATCTTCTCGTCGGACGCCAGCGACGAATCGTGGCACGATTTCTTGCCCAAGGACAGGATCGAGGACGTGA
TATACTTCTCCGGCAA------GTACTTCGTGGGCTTCTACGTCCTCACCAACGAGGAGGACCTCCTGATGTTCCGGCCG
AAGCCCGACGGCGACGGAGCGCAGCTCTCCACGTTCACGGTGCGCTACAGCTTCCCCGGCCACCGCGCGGCCGAGCCGGC
GCCGGGGCAGACGGTCTCCCGCTACCTCGTCGTGTCCCGCGGAGAGCTGCTGATGATCGTGAGGTTCGCCGGCCCCGAGG
AGCGCACGAGGTTCGACGTGCTCGTGCTGGAGGAGAAGAAGATCGTCGGGGGAGCGGACCACAACGACCCGCCCCGAGTC
TTGGCTTCTTGGAGACGGTGCTGCAGCGCGGCGACCCTCAGCGGCCGGAGGATCTTCCTCGGGCGGTGCTGCTCCGTGGC
CGTCGACGTGGGGTACCCCTTCCCGCTCTACATCTACTTCCTGGACGACGGCAGGAGGTCCCACGGCGCCCTCCCGACGG
CCGGGAGCCCGCCGTACCCCTGCAGCGAGACCGGCGGGTTCTGGTTCTTCAACAAGGGCATCGTGCGCTGCCTCCCGCGA
GAGCCTCCGTCGGACTGCTCGCCGTGGATTTGGTTCTACCTGTCCGACGAGACATTCCGGGCCGGCGTGCCTCCGCCTGC
AACTCCGGCTTGCGGCTGGGGGGTCGACACTGACAGTGAGTAGTGACGGCACATTATCTGCAGCAGGACAGAATTCGAAC
TACGTACATGTAAATCTACTGTCCCGTCAGTTCTTCATCCCTGCTTTGGTAAGGTCTCAAATGTTTTGATTTGATTCTTC
ATCCTCGCCGAGGATTTGCTTCATTGTTCT--------------------TCATCATAAGAGATGCATGAACAAACGATT
GTTTGCAGTTCAGCTAATGGTGGTGTGTA------CTGAAACAAGGTCCTGAATAGTTCAGTGCTCTCTGTTAATATTTG
AAGTTCAGATATGTTCCTGAGGCAGCAAGATTGAATGATGAATCTTTGGTAATGTCCCATTGATTGATACCTATCTCTTG
TGAGCTCATATATTATCTTGAATCTTGCGAGTGTGTGTAATACTGTGGTGATGGCATGAATGAATATATGAAACCAGCCT
CAGTGCCATCATATCCTTTCCATTGGCGCAGTTTGGATCTTTTTTTGCTGTAGACTGTGGTACAAGTGCAATGGAGGGTG
TGACTGAATCCTTGATTCAGCTAAATCTACAC-ACATAACCGTTGGGTGGATCCTCCTACTGAGGAGTAGGCTCAGGCTG
CTTCCTGTAGCTGTAGTTCGTTTGCTGCACATAAACAATGCACTTGCTGAAAATACAGTGTAACCATAGAGTAGATCTCT
GCATATATT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTATGTCAAC
TGGGAAATGAAGTAGAATATCAGCGATTGCTGCCATTCTGCGGCACCCCAGCTTTGAAGCCTCTTGACATCATGTCATAG
TTCTCTCACCTAGCTGTCCGTGTTACTGCATATGTAGTTCTA--------TACTTCTATACTAGCAGGAGCAAGATGCAC
CCTCTTAAAAAGAATGAAAGCAAGAAGCAACGGTATGAATCATGCTCGTGCATAGTACTCTACGTGACCAAAAGTACATG
ATTCAGCAGGCACACTCGTATCTCCTCATGCATCATATCGAAGATGATCACACCTCCTCATCCAGTAGAGGGACGTCGAA
CTCCTGCAGCTCCGGCCACTCGATGATGTAGCAAGAAACATGTAGCAGAATCTGGATCACAGCACTGACGACGGCAGTAA
TGTTTGGCGCCTGTTCACAGGAACCAACATTAGTATAGACTGCTGTATTTTGAGATCACACACATATCTGCAGAAACTGG
CAATGAAATGCTGAAACATGCTAGGA
>chr6B_1
TTAAAATCATTCATATTTCTTAAACCAAAAA-TCCGATTTGAAAACTTTTA-TATATTTGAACTCTTGGCAAAGAGACCT
TTAAAACATGATCGGCCTTTAATATATTTCAAATGAATTTTTAAAAAACATGAAATATATTTCACAAAAATCACATATAT
TTCAA--TTC-CAC-ATTTTG-AAAT-AATATGTTTCACTTTTTTGAAATAAACTGTTACACAATTTCAAATAATCTGTT
TCAGAAGTTGACATTTCAGTTTCATATTGTTT--TCATTTTCAGGACCCACATTTCACTTTTCACT-G-CTTGTTTCAC-
-AAAAATCACATGTATTTCATTTCCAAATTTGGGAAATAAAATATTTGGCTCTTTTAAATTG-AATTGTTACACATTTGC
AAATAATCAATTTCACAAGTTAACAATTTAGTTCCATA--TTGTTTTCATTTTCACAAGACACT-------TTGCACT--
------AGTTTCTTTCACAAAAGTCACATCTATTTCAGTTGCACATTTTTGAATGAT----ATATTTTACTCTTTTGAAA
TAAAT-ATTTACACATTTTAAAATAATAAATTTCACAAGTTGACATTTCAGTTTCATATT-----GTTTTCATTTTTGGA
ACCCACATTTCACTTTTCACTA-TGTGTTTCAC-AAAAACCACATCTATCTCATTTACGCATTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GTGAAATAACA
CATTTC-ACTCTTTTCAAATAAAT-TGTTTCACAA---------------------------------------------
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--------------------------
>chr3B_47
T---------------------------------------------TTTTA-TGTATTTGAACTCATGTCGCAAAGACCT
TTAAAACAAGACCGGTTCTGGATACATTAAAATCGG--TTCAAAAAACCATGAAACATATTTCACAAAAAATACATATAT
TTCAA--TTC-CAT-ATTTTT-AAAACAATACAATTCACTATTTTGAAATAAACTATTACACAATTTCAAACAATCCGTT
TTAGAAGTTGACATTTCAGTTTCATATTGTTT--TTATTTTCAGAACCTAAATTTTACTTTTCACT-G-CTTGTTTCAT-
-AAAAATCACATCTATTTCAATTCCATATTTTTTAAATAACATATTTCACTCTTTTAAAATGAAC-GGTTACACATTTCC
AAATAATTAGTTTCATAAGTTAACATTTTAATT-CATA--TTGTTTTCATTTTCAGATGACAAA-------TTTCACTTT
TCACTGA-CTTCTTTCACAAAAATCACATATATTTCAATTCCACATTTTTCAA---ATGACATATTTAACTCTTTCAAAA
TACAC-TTTTACACATTTTGAAATAATCAGTTTCACAAGTTCACAGTTCAGTTTCATATT-----GTTTTCATTTTTAGA
ACCCACATTTCACTTTTGACTA-CTTGTTTTAC-AAAAATCACATCTATTTAAATTCAACATTTTGGAAATAACATATTT
CACTATTTTAAATGAACGGTTACACATTTTCAAATAATCAGTTTCACATGTTAACATTTCAATTTTATATTATTTTCATT
TTCATATGAGACATTTCAATTTTCACTCGCTTCTTTCACAAAAAATACATCTAATTCAATTCCACATTTTTTAAATGGCA
TATCTA-ACTCTTTTGAAATAAAC-TTTTACACA-----------------------TTTTAAAATAGCCAGTTTCACAA
GTAGACATTTCA--------------------------------------------------------------------
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--------------------------
>chr3D_119
--------------------------------------------------------------------------------
--------------------------------------TTCAAAAAATCATCAAACATATTTCACAAAAAATACATCTAT
TTTAATTTTG-CAT--TTTAA-AAAT-AAAATATTCCACTATTTTGAAATAAACTTTTACACGATTTTAAATAATCTATT
TCGGAAGCTGTCATTTCAGTTTCATATTGTTT--TCATTTTCAAAACGCATGTTTCACTTTTCACT-G-CTTGTCTTGC-
-AAAAATCACATCTTTTTCAATTCCACATTTTGGAAATAACATATTTCACGCTTTTAAAATGAAA-TGTTACACATTTCA
AAATAATAAATTTCACGAGTTAACATATTTATTTTATA--TTGTTTTCATCTTCAGAAGACACATTTCACTTTTCATT--
------GGCTTCTTTCATAAGAAGCACATCTATTTCAATTGCGCATTTTTCAA---ATGGCATATTTCATGCTTTTGATA
TAAAA-TTTTACACATTTTAAAATAATCAGTTTCACAAGTTGACATTTCAGTTTCATATT-----GTCCTCATTTTCAGA
ACCCACTTTTCACT-------G-TTTGTTTCAC-AAAAATAACA--TATTTCAATTTCACTTTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTTAAATAACA
TATTTTCACTCCTATGAAATAAA---------------------------------------------------------
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--------------------------
>chr5B_137
--------------------------------------------------------------------------------
--------------------------------------------------------ATATTTCACATAAACCACGTCTGT
TTCAAATTGCACAT--TTTTG-GAAA-AACTTATTTCACTCTTTTGAAATAAATTGCTACACATTTCCAAATAATTAGTT
TCACAGAATACCATTTCAGTTTCATATTGTTT--TCATTTTTAGAACCCACGTTTCACTTTTCATTGG-CTTGTTTCAC-
-AAAATTCACATCTATTTGAATTCCAGGTTTTTGAAATAACACATTTCACATATTTGAAATAAAATTTTAACACATTTCC
AAATAATCAGTTTCACAAAACTAACATTTCAGTTCATA--TTATTTTCATTTTTAGAACCCACATTTCACTTTTCACT--
------A-CTTGTTTCACAAAAAGAACAACTATTTCAATTCCACATTTATGA---AAAAACATAATTCACAATTTTGAAA
TAAATTGTT-ACACATTTCCAAATAATCAGTTTCACAAGTTGACATTTCAGTTTCATATTACTATTTTTTATTCTTCAGA
ACCCACATTTCACTTTTCACTA-CTTGTTTCAC-AAAAAAAACATATATTTCAGTTTCAAAATT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTGAAATAACA
TATTTC-ACACTATT--AAAAAAT-TGTTACACA----------------------------------------------
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--------------------------
>chr4A_139
--------------------------------------------------------------------------------
----------------------------------------------------------ATTTCACAAAGATCACATATAT
TTCAG--TTC-CAGAATTTTA-AAAT-AACATAGTTTACTGTTT---AAACAAATGTTACACATTTCAAAATAATCAGTT
TCACAAGTTGACATTTCAGTTTCATATTGTTTCTTTACTTTCAGAACCTACATTTCACTTTTCACT-GGTTTGTTTCCC-
-AAAAATCACATCTATTTTAATTTCACATTATTGAAAAAGCATATTTTACTCTTTTAAAATAAAT-CATTACAGATTTCA
AAAAAATTAATTTCACAAGTTGACATTCAGTTTCATA--TTTTTTTTCACTTTCAGAACCTACATTTCACATTGGACT--
------AGCTTGTTTCACAAAAATTACACCTATTTCAATATCATAATATGGA---AAAAGCATATTTCACTCTTTTGAAG
TAAGTCATT-ACACATTTCATAATTTTCAATTTCACAAGTTGAAATTTTAGTTTCACATT-----TTTTT-ACTTTTAGT
AGGTACATTTTACTTTTCATTGGCTTCTTTCAC-AAAAATCACATCTATTTCAATTGCACATTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATGAAATAACT
TATTTT-ACTCTTTCGAAATAAAAATGTTACACA----------------------------------------------
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--------------------------
>chr1A_140
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTCACAAAAATCACATATAT
TTCAA--TTG-CGC-ATTTTTGAAAT-AATGTGTTTCACACTCTTGAAATAAACTGTTACACATTTTGAAATAATCATTT
TCACAAGTTGTCATTTCACTTG-ATATTGTTT-TTTACTTTCAGAACCTAGATTTCACTTTTCACT-GGTTTCTTTCCC-
-AAAAATCAACTCTATTTCAATTTCACGCTACTGAAACAGCATATTTCACTCTTTTAAAATATAT-CGTTACACATTTCA
AAATTTTCAATTTCACAAGTTGACATTCAGTTTCACTTTTTATTTTTGACTTTCAGAACCTACATTTCACTTTGCACT--
------AGTTTGTTTCACAAAAATTACATCTATTTCAATTTCACATTATTGAA---AAAGCATATTTCGCCCTTTTTGAG
TAAACCATT-ATACATGTCATAATCTTCAATTTCACAAGTTGAGATTTTAGTTTCACATT-----TTTTTCACTTTCAGT
AGGTGCATTTTACTTTTCACCGTCTTCTTTCAAAAAAAATCACATCTACTTCAATTGCATATTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ACAAAATAATT
TATTTT-ACTCTTTTGAAATAAAAATGTTACACA----------------------------------------------
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--------------------------
>chr3A_146
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAAATCATATCCAT
TTCAA--CTG-CAC-ATTTTTCAAG---ACCTATTTCACTATTTTTAAATAGACCATTTCACATTTTGAAATAATCGGTT
TCACAAGTTGACATTTCAGTTTCATATTGTTT--TCACTTTCAGAACCTACATTTCACTTTCCACT-CGCTTGTTTCACA
AAAAAAACACATATATTTCAAGTGGACATTTTTGTAATAACATGTTTCACTCTTTTGAAATAAAC-TGTTACACATTTCG
AGATAACCAGTTTCACAAGTTGACATTTCAGTTCATA--TTGTTATTCACTTTCAGAACCTACATTTCACTTTGCTCT--
------GGCTTGTTTCACAAAAAATAGATCTATTTCAATTTCACATTATTGAAAGAAAAGCATATTTCACTCTTTTGAAG
TAAATTGTT-GTACATTTCAAAATTTTCAATTTCACAAGTTGAGATTTTAGTTTAACATT-----TTTTTCACTTTTGGA
TGGTGCATTTCACTTTTCATTGGATTGTTTCAC-AAAAATCACATATATTTCAATTGCATGTTT----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTGAAATAACA
TG-TTT-ACTCTTTTGAAATAAAA-TGTTACAC-----------------------------------------------
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--------------------------
>chr6B_720
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-------------------------------------------TTTCAGGTGGATGGTTTTGACCTCGCCAGCTCCAACG
CTGGGGTGTTCTAGGTAATCAAATGAGTTCTGCTGCGAGATCGGTGTGGAATTTTTTTGATGGGTGAAAGGTTAACGGTA
TTGGATTGTTAGTGTTGCAAGGTACTTTAACCATGTTGCAAAAGTGGATGTGTTTAGTAGAAATGTGCTTTTGCATTGTT
GTATGCATCTGTTGTTGCATATA--GGTTCGTCCCTATGTAGCATATGTTATGAAAATCTATTCTGAAAGATTGGGATTT
GCAGCATATGCAATTTTTTCTATAAATATCTCGATGTTTTGCACCAACCTTTCAGAGTTCGCATCTCAACGATAAACTTT
CACTTCGTCTCTCTCCCTCGGTCCCTCCCCA-------CCCCACCAAGAAGTTTCAAGAAACTCAAGAACCTCTCCTCCC
ATGGGGGTGCCGCTGCCGAAGTCGAAGTGGCGGCCGTGGGCTGAACTCCCCGAGAGGTACCTCAGCGACATCATCCGCAA
CCTCCCGTGCATCCTCGACCACGCCCGCTTCTCCAGCGTCTGCACTAGGTGGCGCGAGACGGCGCGGACGAACCCGCCGA
GGTTCCCGTTCCCGTGGCTGATGATGCCATCCACCGCCGCGACCTCCTTCTTCTGCGTCGCCTGCAGAGCGACCCACCAC
CGCCCCAGGCTCCCCGCGGACGCCCGCGGCGCGCGCTTCTGCGGCTCTTTCCCGGGCGGCTGGCTCGTCGCCGAGCTCCC
GTGGCCGCGCGGCCACTACGCCTTGCTCAACCTCCTCACCGGCGCGCGCGTCCCCCTCCCGAGGCTCCTCGCCGTCCCCT
GCCACGGTGGCGGCAAGATGTGCCCCGTCGTTCTCCACGCCGTCACCCTCTCCGCCGCGCCGTCCGTCGAGCCCGGCCCC
GGCGAGCCCTACTACGCCGCCGCCATAGTGGCTGGCCAGTCCAATATCGCTTTCTGGTGCCCGCGCGCCGGGAACTGCTG
GTTTCCGCCGATCTTCTCGTCGGACGCCAGCGACGAATCGTGGCACGATTTCTTACCCAAGAACAGGATCGAGGACGTGA
TATACTTCTCCGGCAACGGCAAGTACTTCGTGGGCTTCTACGTCCTCACCGACAAGGAGGACCTCCTGATGTTCCGGCCG
GAGCCCGACGGCGACGGGGCGCAGCTCTCCACGTTCACGGTGCGCTACAGCTTCCCCGGCCACTGCGCGGCCGAGCCGGC
GCCGGGGCAGACGGTCTCCCGCTACCTCGTCGTGTCCCGCGGGGAGCTGCTGATGATCGTGAGGTTCGCCGGCCCCGAGG
AGCGCACGAGGTTCGACGTGTTCGTGCTGGAGGAGAAGGAGATCATCAGGGGAGCGGACCACAACGGCCCGCCTCGAGTC
TTGGCTTCTTGGAGACGGTGCTGCAGCGCGGCGACCCTCAGCGGCCGGAGGATCTTCCTCGGGCGGGGCTGCTCCGTGGC
CGTCGACGTGGGGTACCCCTTCCCGCTCTACATCTACTTCCTGGACGACGGCAGGAGGTCCCACGGCGCCCTCCCGACGG
CCGGGTACCCGCCGTACCCCTGCAGCGAGACCGGCGGGTTCTGGTTCTTCAACAAGGGCATCGTGCGTTCCCTCCCGCGA
GAGCCTCCGTCGGACTGCTCGCCGTGGATTTGGTTCTTCCTGTCCGACGCGACATTCCGGGCCGGCGTGCCTCCGCCTGC
ATCTCTGGCTTGCGGCTGGGGGGTTGACACTGACAGTGAGTAGTGACGGCACATTATCTGCAGCAGGACAGAATTCGAAC
TACGTACATGTAAATCTACTGTCCCGTCAGTTCTTCATCCCTGCTTTGGTAAGGTCTCAAATGTT-TGATTTGATTCTTC
ATACTCGCCGTGGATTTGCTTCATTGTGATCATACTGTTCCGTGAGTTTATCATCATAAGAGGTGCATGAACAAACGATT
GTTTGCGGTTCAGCTAATGGTGGTGTGCAACTGACCTGAAACAAGTTCCTGAATAGTTCAGTGCTCTCTGTTAATATTTG
GAGTTCAGAGATGTTCCTAACGC---------------------------------------------------------
--AGCTCATATATTATCTTGAATCTTGCGAGTGTGTGTAATACTGTGGTGATGGCATGAATGAATACATGAAACCAGCCT
CAGTGCCATCATATCCTTTCCATTGGCACAGTTTGGATCTTTTTTTGCTGTAGACTCTGCTGCAAGTGCAATGGAGGGTG
CGACTGAATCCTTGATTCAGCTAAATCTACACTACATAACCATTGGGTGGATCCTCCTACTGAGGAGTAGGCTCAGGCTG
CTTCCTGTAGCTGTAGGTCGTTTGCTGCCCATAAACAATGCACTTGCTGAAAATACATTGTAACCACAGAGTATATCTCT
GCATATATTGTACTCCCTCCGTTCCTAAACATAAGTCTTTGAAAAGATTTTACTATGGACCACATAAGGAGCAAAACGAG
TGAATCTACACTTAAAATGCATATATATACATCTGTATGTGGTCCATAGTGAAATCTCTACAAAGACTTATACTCCCTCC
GTTCCTAAATGTAAGTCTTTGTAGAGATTCCACTAGGTGGACTACATACGGAGCAAAATGAATGAATCAACACTTAAAAT
GCATCTATATACATCCGTATGTAGTTCATAGTGGAATCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTATGTCAAC
TGGGAAATGAAGTAGAATGTCAGCGGTTGCTGCCATTCTGCGGCACCCCGGCTTTGAAGCCTCTTGACAACATGTCATAG
TTCTTCCACCCAGCTGTCCATGTTACTTCATATGTAGTTCTATACTTCTATACTTCTATACTAGCAGGAGCAAGATGCAC
CCTCTTAAAA-GAAGGAAAGCAAGAAGCAATTATATGAATCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>SNPs
----------------------S--S-----S--S--------SSS----SS----------------------------
------------S------S---S------S-----S---S---------------------------------------
-------------------------------------S--------------S--------S------------------
S------------------------------------------------------------------S------------
------------------------------------------------------------S-------------------
-------------------------------------------------------------------------S------
-----------------------S--------------------------------------------------------
-------------------------------------------S---------S-----------S--------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S------------------------SSSSSSSS---S-------------------------------SS
SS-S-------------------S---------------------------S----------------S-----S-----
----------S------------------------------------S-------------------S------------
----------S------------SS---------------S------S--S-----------------S-----------
-------------------------------------------------S------------------------------
-------S---------------------S-SSSSSSS------------------------------------------
------------------S------S------------------------------------------------------
----------------------------------S--------------------------------S------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------S------------S--------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------S-----S-----------------------------
------------------------------------------------------S------S------------------
--------------------------------------------------S--S--------------------------
S----------------S---------------------------------------------S----------------
------------------------------------------S-------------------------------------
--------------------S-----------------S-----S--S------------------S------S------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-----SS------------------------------------------------------------S-S----------
-------------------------------------S-----------S------------------------------
-S---S------------------S-------------------------------------------------------
-----------------------------------------------------------------S--------------
--S-------S----------------SS---------------------------------S-----------------
------S--------------------S-----------------S----------------------------------
S--------S--------S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------------------------------------------------------S-------------
---------------------------S----------------------------S--S-S------------------
S----------------------------------------S--------------------------------------
----------------S-----------S----------------------------S--------S------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S------S-----------------------S-------------------S----------
----SS----S--------S-------S----------------------------------------------------
----------S---S---------------SSS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1012
--------------------------------------------------------------------------------
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--------------------------------CTGCGAGATCGGTGTGGAAA----------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_2314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CCGAGTC
TTGGCTTCTTGGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>forward_1982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCACGATTTCTTGCCCAAGG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_4079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TGTTTGGCGCCTGTTCAC--------------------------------------------------------------
--------------------------
