>input_sequence_46898
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------------------------ATGGGCAAGGCGGCGAGGTGGCTGCGCGGCCTGCTGGGCGGCGGCGGGAAGAAGGA
GCAGGGGAAGGAGCATAGGCGGCCGGCCACGTCCACGGCGCCGCACGGGGACAGGAAGCGCTGGAGCTTCTGCAAGTCCA
CCAGGGACTCAGCCGAGGCGGAGGCGGCGGCCGCGGCCGCCGCGCTCAGCGGCAACGCGGCGATCGCGCGGGCGGCCGAG
GCGGCGTGGCTCAAGTCCTTGTACAACGAGACCGAGCGGGAGCAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGC
GGCGGCGGCCGACGCTGCCGTGGCCGCGGCGCAGGCCGCCGTGGAGGTCGTGCGGCTCACCAGCAAAGGGCCGACGTCGA
CGGTGCTCGCCGTCGCCGTCGCGGAGCCCCGTGGCCGCGCCTCCGCCGCGGTCAAGATCCAGACAGCGTTCCGTGGCTTC
CTGGTGAGTAACTTCCGGCCGAATATCGAGTATCGACGCCATGATTTCCGCAGGATTAAGCGCTGACTAATCGAATCAAT
GCGTGTTGAATTACCGCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTCGTGCGCGGCT
ACCTGGTGCGCAAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCCGCC
CGCTCGCGCGCCGCCGCGCTCCCCACGAACCTTCGCGTCCACCCCACTCCTGTCCGGCCGCGCTACTCGCTGGTAAGTGG
CCACGGCCGGCATCG-----TCGCTTGCGACCAAAGCAATCAATCTCAATGTCTCCGACCGTCCGAGGTCGCGTTGTTCT
AGCTAGCCGACCGTAACAAACGTGCGCGTGCGCGGTTTCTTGCTTGTGTCTGCAGCAAGAGCGGTACAGCACCACTGAGG
ATTCCCGGAGCGACCACAGCGTGGCGCCGTACTACAGCCGCCGGCTGTCGGCGAGCGTGGAGTCGTCGTCGTGCCACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCCGGCCCAAGTCGCGCTCCTCCTCGCTCCGGACGACCTCCCC
------CGGCGCCAGCGAGGAGTG------CTACGCCCACTCGGTGTCGTCGCCGCT---------------CATGCCGT
GCCGGGCGCCCCCGCGGATCGCCGCGCCGACCGCGCGCCACTTCCCGGAGTACGAGTGGTGCG------AGAAGGCCCGG
CCGGCGACGGCGCAGAGCACGCCCCGGTACGCGAGCT---ACGCGCCCGTCACGCCGACCAAGAGCGCGTGCGGCGGC--
----TACACCTACAGCAACAGCCCGTCGACGCTCAACTGCCCCAGCTACATGTCGGGCACGCAGTCGTCCGTGGCGAAGG
TGCGGTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTGCGGAAGAGGGTGCCGCTGAGCGAGGTGATCATC
CTGCAGGAGGGCCGGGCGAGCCTGAGCGGC------GGCACGCAGAGGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTT
CAGCTTCAAGAAGGCCGTGGTGAGCCGCTTCGACCGCTCGTCGGAGGCGGCCGAGAGGGAACGGGACCGGGACC------
TGTTCCTGCAGAAGGGATGGTGA---------------------------------------------------------
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-------------------------
>chr3D_1_TraesCS3D01G109900
CATGGCGAGGACGAGGGGAGCGGCGGAGCCGGTGGCTGGCCACGGACTCGCGTCACGTACGCCTCTACCTG-TGGCACGC
ACTGTGAAAAGACGAAAGGAG---ACGCCGCCCAAAAGTCCAAACCTTTGCGTTTCTCACCGTCCCGTGCTTCTTCCCTT
TGACACATGCATGGCGGCAGGGATCTCCACCATGCAGCGCCTACCCGAAACTGCGTCACGAAGTACTTCCATATCGCAGC
CC--GCTCACCACTCGTTCGCTTT-CGGGCCAGACTTCACCGGGCCGGGCCACTAGATAAATTTTGTTTCTTTCTCATCA
GTACTACTCA---CTGCTCTTTCCTCGACGACACTGACCTTTCGAGCTCGCAAATCGCAACGTGGGTGCATGTGTGTTAG
TGTCCATGCAGATTAGTAG------------TACTACCACGAGCTGACCACACAGCTTTGCAGTTGCAGCAGCCATGGGA
GAGGAGGACATGGCTCCATACACTCCCTTGCGCCA--------ATCTTTTTGAACTATCGCTGCGTCTTTTCGAACGCCG
AGCTCA--------GCTCGGCACCAAACCAAATCCCTCGCTGCTCGCTTGTTCTCATGCTCCCGTGGCATGGCAGAGAGC
GTTGCATGCATTCCCATCTCT-----TGGCATCACGCCGCATTTGTTTAATCCCATCTATCTAGGCCGCGCAAGGCGACT
CGCTCGCTCCTCACTCAGCAGCAGCACCATGCATGCGAGCATTAATGAGTAAGACTTGTGAGTAA----TTTTTTTGTTT
GTTTTCTTGGAGGCACTATTGTTTTTGTCCTGTAATGCCCCTCCCGTTTCCTTTTATTTGGATCCCGCTCCCCACCCACT
GGCCTCCACTCCATAGCCGTTTCCCTCTCTTATTCAAACCTGCACCGCTTCTCACGCCTCACGCCTCCTTCCTCTTCCAC
TGCACTTCAC-----------ACACACGCCTCAGTCTTCTTGAG------TAGTTGCCCACCTGAGTTGCCTTCTCTGGG
GGGCCGGGGCTGCGGGTTCCGGTGATGGGCAAGGCGGCGAGGTGGCTGCGCGGCCTGCTGGGCGGCGGCGGGAAGAAGGA
GCAGGGGAAGGAGCATAGGCGGCCGGCCACGTCCACGGCGCCGCACGGGGACAGGAAGCGCTGGAGCTTCTGCAAGTCCA
CCAGGGACTCAGCCGAGGCGGAGGCGGCGGCCGCGGCCGCCGCGCTCAGCGGCAACGCGGCGATCGCGCGGGCGGCCGAG
GCGGCGTGGCTCAAGTCCTTGTACAACGAGACCGAGCGGGAGCAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGC
GGCGGCGGCCGACGCTGCCGTGGCCGCGGCGCAGGCCGCCGTGGAGGTCGTGCGGCTCACCAGCAAAGGGCCGACGTCGA
CGGTGCTCGCCGTCGCCGTCGCGGAGCCCCGTGGCCGCGCCTCCGCCGCGGTCAAGATCCAGACAGCGTTCCGTGGCTTC
CTGGTGAGTAACTTCCGGCCGAATATCGAGTATCGACGCCATGATTTCCGCAGGATTAAGCGCTGACTAATCGAATCAAT
GCGTGTTGAATTACCGCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTCGTGCGCGGCT
ACCTGGTGCGCAAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCCGCC
CGCTCGCGCGCCGCCGCGCTCCCCACGAACCTTCGCGTCCACCCCACTCCTGTCCGGCCGCGCTACTCGCTGGTAAGTGG
CCACGGCCGGCATCG-----TCGCTTGCGACCAAAGCAATCAATCTCAATGTCTCCGACCGTCCGAGGTCGCGTTGTTCT
AGCTAGCCGACCGTAACAAACGTGCGCGTGCGCGGTTTCTTGCTTGTGTCTGCAGCAAGAGCGGTACAGCACCACTGAGG
ATTCCCGGAGCGACCACAGCGTGGCGCCGTACTACAGCCGCCGGCTGTCGGCGAGCGTGGAGTCGTCGTCGTGCCACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCCGGCCCAAGTCGCGCTCCTCCTCGCTCCGGACGACCTCCCC
------CGGCGCCAGCGAGGAGTG------CTACGCCCACTCGGTGTCGTCGCCGCT---------------CATGCCGT
GCCGGGCGCCCCCGCGGATCGCCGCGCCGACCGCGCGCCACTTCCCGGAGTACGAGTGGTGCG------AGAAGGCCCGG
CCGGCGACGGCGCAGAGCACGCCCCGGTACGCGAGCT---ACGCGCCCGTCACGCCGACCAAGAGCGCGTGCGGCGGC--
----TACACCTACAGCAACAGCCCGTCGACGCTCAACTGCCCCAGCTACATGTCGGGCACGCAGTCGTCCGTGGCGAAGG
TGCGGTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTGCGGAAGAGGGTGCCGCTGAGCGAGGTGATCATC
CTGCAGGAGGGCCGGGCGAGCCTGAGCGGC------GGCACGCAGAGGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTT
CAGCTTCAAGAAGGCCGTGGTGAGCCGCTTCGACCGCTCGTCGGAGGCGGCCGAGAGGGAACGGGACCGGGACC------
TGTTCCTGCAGAAGGGATGGTGATGAACTGATGTTCTCGGATTCACTCGATCGTGAAGTACAATTAATTACTG----CTA
CCTCCAGTAATAGCCTGATAGGGTAGGGGGAAT-TGTTAATCTCTAGTTACCGCTTCTCACCGTTGTTTGTTTATGGATC
GTG--------TTAACCTCTGT---GGCTGTGGCCATGACTCCGTTGTGTGTCTAGGTTCAGAAATGAAACTCTGCAA-T
TTCTCTTGCTTTGTGTAAACATGTTTGTGCGTGCATGGGAAGCTCAAGGAAGATTTTAGTACTGTGCTAAAGTTTCAGAA
TTCAGATTTAGCAGTACACCGGCTTCAGCTTGCAAGTACATCC-TTTTTCTGGCTC-------CTATCAATTCAACCAAG
TGAGTGGGCATACCACCATCAGGCTAGCAAAACGCTAAGGCCAACCCCACCGCGCGACCCCAAACGTAGGTCCGGTTTGC
TCGGATTTTGTCCGTTTGGGTAGGGCGATGGGGGCGTGTCTGGATCTGTCCTGGGATGCGGTGGCCGTGCGTGCG-----
----GCCGCATCCCTTTG-CCCATCCTGTCCGCCAGGGCCAAAAATGC---TATTTTCATATGTAAACTAGTTTGCACGT
CCAAATAT---TAATTGTCCGAAAATAAAAATAGTTTTACAACCCAATCGAAATTGTCTCTAAC-AAAATTGTTTTACAA
CCAAATCAAAATTGTCTTCAACGAACATAAAATGAACCAATATATCTATTGGTTGCCAATATGATCCCACACGTACTCAT
CCAAGTCATTTTGAAGATCCAAATGAGTGTGCCAATCACGCAGCTCGCGATGGAATTGGACAAACTGTTCAAATGTGGCC
GGTTCTTGGTGCAGGGGCTCAACATTTTCACCTTGATAATCAAATCCTTGGTCGAAGATGCTCTCATCACGCTCGTCCTC
GACGATCATGTTGTGCATGATGACACAAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATGACAGTGCAGGGTTTC
GAACGATGCCCCACCGGGATTGAAG
>chr3B_1
CAAGGCGAGTACGAGGG-AGCGACCGAGACGGTGTGCGTTGTCACGGA--------GTACGTCTCTACGACCTGGCACGC
ACCGTGAAAAGACGAAAGGAGGAGACGCCGCCCAAAAGTCCAAACCTTTGCGTTTTTCACCGTCTCGTGCTTCTTCCCTT
TGACACATGCATGGCCGCAGGG-TCTCTACCACGCAGCGCCTACCCGAAACTGCGTCACAGAGTACTTCCATATCGCAGC
CC--GCTCGCCACTCGCTCGCTTT-CCGGCCAGAGTTCACCGGGCCGGGCCACTAGATAGAATTTGTTTGTTTCTTTTCA
GTGAT---------------------------ACTGACCTTTCGAGCTCGCAAATCGCAACGTGGGTGCATGTGTGTTAG
TGTCCATGCAGATGCAGATTAGTACTACTACTACTACCACGAGCTGACCACACAGCTTTGCAGTTGCAGCAGCCATAGGA
GAGGAGGACATGGCTCCATGCACTCCCTTGCGC--------CTATCTTTTTGAACTATCGCTGCGTCTTTTCGAACGCCG
AGCTCAGCTCATCAGCGCAGCACCAAACCAAATCCCTCGCTGCTCGCTTGTTCTCATGCTCCCG-----TGGCAGAGAGC
GTTGCATGCATTGCCATCTCT-----TGGCATCACGCCGCATTTGTTTAATCCCATCTATCTAGGCCGCGCAAGGCGACT
CGCTCGCTCACT------CAGCAGCAGCATGCATGCGAGCATTAATGAGTAAGGCTTG-------TATTTATTTTTGTTT
GTTTTCTTGGAGG---TATTGTTTTTGTCCTGTAATGCCCCTCCCGTTTCTTTTTATTTGGATCCCGCTCCCCACCCACT
GGCCTCCA-----TAGCCGTTTCCCTCTCTTATTCAAACCTGC-CCGCTTCTCACGCCTCACGCCTCCTTCCTCTTTCAG
TGCACCTCACCCTGCCCCTCTACACACGCCTCAGTCTTCTTGAGAGCCACTAGTTGCCCACCTGAGTTGCCTTCTCTGGG
CGGCCGGAGCTCCGGGTTCCGGCGATGGGCAAGGCGGCGAGGTGGCTGCGTGGCTTGCTGGGCGGCGGCGGCAAGAAGGA
GCAGGGGAAGGAGCAGAGGCGCCC------GGCCACGGCGCCGCACGGGGACAGGAAGCGCTGGAGCTTCTGCAAGTCCA
CCAGGGACTCGGCAGAGGCGGAGGCGGCGGCCGCGGCCGCGGCGCTCAGCGGCAACGCGGCGATCGCGCGCGCGGCCGAG
GCGGCATGGCTCAAGTCCTTGTACAACGAGACCGAGCGCGAGCAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGC
GGCGGCGGCGGACGCGGCTATGGCTGCCGCACAGGCAGCCGTGGAGGTCGTGCGGCTCACCAGCAAAGGGCCGACGTCGA
CGGTGCTCGCCGACGCCGTCGCGGAGCCCCACGGCCGTGCCTCCGCCGCGGTCAAGATCCAGACGGCGTTCCGTGGCTTC
CTGGTGAGTAATTTCCTTCCTAACAG-------CGGCGCCATGATTTCCGCAGGTTTAAGCGCTGAGTAACCAAATCAAT
GCGTGTTGAATTATCGCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTGGTGCGCGGCT
ACCTGGTGCGGAAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCTGCC
CGCTCGCGCGCCGCGGCGCTCCCGACGAACCTTCGCGTCCACCCCACTCCTGTCCGGCCGCGCTACTCGTTGGTAAGTGA
CCACGGGTCCACGGCCGGCATCGCTTGCGACCAAAGCAATCGATCTCAATGTCTCTGACCGTCCGAGGTCGCGTTGTTCT
AGCTAGCCGACCGTAACAAATGTGCGCGTGCGTGGTTTCTTGCTTGTGTCTGCAGCAAGAGCGGTACAGCACCACGGAGG
ATTCCCGGAGCGACCACCGCGTGGCGCCGTACTACAGCCGCCGGCTGTCGGCGAGCGTGGAGTCGTCGTCGTGCTACGGC
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCCGGCCCAAGTCGCGCTCCTCCTCGCTCCGGACGACCTCCCC
------CGGCGCCAGCGAGGAGTG------CTACGCCCACTCGGTGTCGTCGCCGCT---------------CATGCCGT
GCCGAGCGCCCCCGCGGATCGCGGCGCCCACCGCGCGCCACTTCCCGGAGTACGAGTGGTGCG------AGAAGGCCCGG
CCGGCGACGGCGCAGAGCACGCCCCGGTACACGAGCT---ACGCGCCGGTGACGCCGACCAAGAGCGTGTGCGGCGGC--
----TACACCTACAGCAACAGCCCGTCGACGCTCAACTGCCCCAGCTACATGTCGAGCACGCAGTCGTCCGTGGCGAAGG
TGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTACGGAAGAGGGTGCCGCTGAGCGAGGTGATCATC
CTGCAGGAGGCCCGGGCGAGCCTGGGCGGCGGCGGGGGCACGCAGAGGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTT
CAGCTTCAAGAAGGCCGTCGTGAGCCGCTTCGACCGCTCGTCGGAGGCGGCCGAGAGGGAACGTGACCGGGACCGGGACT
TGTTCCTGCAGAAGGGGTGGTGATGAACTGACGGTCTCGGATTCACTCGATCGTGAAGTACAATTAATTACTAC------
-CTCGGGTAATAGCCTGATAGGGTAGGGGGAAT-TGTTAATTTCTAGTTACCGCTTCTCACTGTTGTTTCTTTGTTTATC
GATCGCGTTAACCTCTGTGGCTGTGGGCTGTGGCCATGACTCCGTTGTCTGTCTAGGTTCAGAAATGAAACTCTGCAG-T
TTCTCTTGCTTTGTGTAAACATGTTTGTGCGTGCATGGGAAGCTGAAGGAAGATCTTAGTACTGTAGTGAAGTTTCAGAA
TTCAGAATTAGCAGTACACCT------GCTTGAAAGTACATCCTTTTCTAGCTCCTACTAGTACTATCAATTCAACCAAG
TGGGTGGGTATACACCA---------------------------------------------------------------
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>chr3A_75
---------------------------------------------------------------------------CACGC
ACCGTGAAAAGACGAAAGGAGGAGACGCGGCCCAAAAGTCCAAGCCTTTGCGTTTTTCACCGTCCCGTGCTGCTTCCCAT
CGACGCATGCATGGCGGCAGGG-TCTCCACCACGCAGCGCCTACCCGAAACTGCGTCACGGAGTACTTCCACATCGCAGC
CCCCGCTCACCACTCGCTGGCTTTCCCGGCCAGAGTTCACCGGGCCGG-CCACTAGATAAATTTTGTTTCTTTCTCTTCA
GTACCACCACTCGCTGCTCTTTCCTCGACGACACTGACCTTTCGACCTCGCAAATCGCAACGTGGGTGCATGCGTGTTAG
TGTCCATGCAGACGCAGATTAGTACTACTACC---ACCACGAGCTGACCACACAGCTTTGC---------------AGGA
GAGGAGGACATGGCTCCATGCACTCCCTTGCGCGGTTGCGCCTATCTTTTTGAACTATCGCTGCATATTTTTGAACTCCG
A-------------GCTCAGCTCGGCACCAAATCGCCCCCTGCTCGCTTGTTCT--------CG-----TGGCAGAGGGC
GTCGCATGCGTTGCCATCTCTTGGCCTGGCATCACGCCGCATTTGTTTAATCCCGTCTATCTAGGGGA------------
------CTCACT------CAGCAGCACCATGCATGCGAGCATTAATGAGTAAGACTTGTGAGTAGTAATTTTTTTTGTTT
GTTTTCTTGGAGGTACTATTATTTTTGTCCTGTAATGCCCCTCCCGTTTCTTTTTATTTGGATCCCGCTCCCCACT----
---CTCCA-----TAGCCGTTTCCCTCTCTTATTCAAACCTGC-C-GCTTCTCACGCCTCACGCCTCCTTCCTCTTCCAG
CGCACTTCAC-----------CCACACGCCTCGGCCTTCTTGAG------TAGTTGCCCACCTGAGTTGCCATCTCTGGG
CGGCCGGGGCGGCGGGTTCCGGCGATGGGCAAGGCGGCGAGGTGGCTGCGTGGCCTGCTGGGCGGCGGCGGGAAGAAGGA
GCAGGGGAAGGAGCAGAGGCAGCCAGCCACGGCCGCGGCGCCGCACGGGGACCGGAAGCGCTGGAGCTTCTGCAAGTCCA
CCAGGGACTCGGCCGAGGCGGAGGCGGCGGCCGCGGCCGCCGCGCTCAGCGGCAACGCGGCGATCGCGCGCGCGGCCGAG
GCGGCGTGGCTCAAGTCCTTGTACAACGAGACCGAGCGGGAGCAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGC
GGCGGCGGCCGACGCTGCCGTGGCCGCCGCGCAGGCCGCCGTGGAGGTCGTGCGGCTCACCAGCAAAGGGCCGACGTCCA
CGGTGCTCGCCGGCGCCGTCGCCGAGCCCCGCGGCCGCGCCTCCGCCGCGGTCAAGATCCAGACGGCGTTCCGTGGATTT
CTCGTGAGTAACTTCCTGCCGAATATCGAGTATCGACGCCATGATTTCCGCAGGATTAAGCGCCGACTAATGGAATCAAT
GCGTGCTTGATTGTCGCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTGGTGCGCGGCT
ACCTGGTGCGGAAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCCGCC
CGCTCGCGCGCCGCCGCGCTCCCCACGAACCTTCGCGTCCACCCGACCCCTGTCCGGCCGCGCTACTCGCTGGTAAGTGA
CCACGGCCGGCATCG-----TCGCTTGCGACCAAAGCAATCAATCTCAATGTCTCCGACCGTCCGAGGTCGCGTTGTTCT
AGCTAGCCGACCGTGACAAACGCGCGCGTGCGCGGTCTCTTGCTTGTGTCTGCAGCAAGAGCGGTGCAGCAGCACGGAGG
ATTCCCGGAGCGACCACGGCGTGGCGCCGTACTACAGCCGGCGGCTGTCGGCGAGCGTGGAGTCATCGTCGTGCTACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGGCGGCCCAAGTCGCGCTCCTCCTCGCTCCGCACGACCTCCCC
------CGGCGCCAGCGAGGAGTG------CTACGCTCACTCGGCGTCGTCGCCGCT---------------CATGCCGT
GCCGACCGCCCCCGCGGATCGCGGCGCCGACCGCGCGCCACTTCCCGGAGTACGAGTGGTGCG------AGAAGGCCCGG
CCGGCGACGGCGCAGAGCACGCCCCGGTACGCGAGCT---ACGCGCCGGTGACGCCGACCAAGAGCGCGTGCGGCGACCA
CGGATACACGTACAGCAACAGCCCGTCGGCGCTCAACTGCCCGAGCTACATGTCGGGCACGCGGTCGTCTGTGGCGAAGG
TGCGGTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTGCGGAAGAGGGTGCCGCTGAGCGAGGTGATCATC
CTGCAGGAGGCCCGGGCGAGCCTGGGCGGCGGCGGGGGCGCGCAGAGGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTT
CAGCTTCAAGAAGGCCGTGGTGAGCCGCTTCGACCGCTCGTCGGAGGCGGCCGAGCGGGACCGGGACCGGGACCGGGACT
TGTTCCTGCAGAAGGGATGGTGATGGACTGACGGCCTCGGATTCACTCGATCGTGAAGTACAATTAATTACTACGTACTG
CCTCCTGTAATGGCCTGATAGGGTAGCGGGGGACTGTTAATTTCTAGTTACCGCTTCTCACTGTTGTTTCTTTGTTTATC
GATCGCCTTAATTAACCTCTG---------------TGACTCCGTTGCCTGTCTGGGTTCAGAAATGAGACCCTGCGGTT
TTCTCTTGCTTTGTGTAAACATGTTTGTGCGTGCATGGGAAGCTCAAGGAAGGTTTTAGTGCTGTGCTAAAGTTTCAGTA
TTCAGATTTAGGAGTACACCGGCTTCAGCTTGCAAGTACATCCTTTTTTCTGGCTC-------CTGTCAATTCAACCAAG
TGAGTGGGCATACACCA---------------------------------------------------------------
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>chr1B_1937
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-----CGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGGCTGTCGGCGAGCATCGAGTCGTCGTC---CTACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAATCTCGGTCGTCGTCGCGCCGGGCGAGCTCCCC
GCTGCTCGACCCGTGCGAGGAGTGGTGCGCCGCCACCAACCCCATGTCGTCGCCGCTGCTGCTGCCGTGCCACATGCCAG
GCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCGGAGTACGACTGGTGCGCGATGGAGAAGGCCCGG
CCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGGCCACCCCGACCAAGAGCGTGTGCGGCAGCGG
CTACTCGTCGTCGTCTCT------------GCTCAACTGCCCCAGCTACATGTCCAGCACGCAGTCCTTCGAGGCAAAAG
TGCGGTCGCACAGCGCGCCGAAGCAACGGCCGGAGCCCCCCACAAACAGGAAGCGGGTGCCGCTGAGCGAGGTGGTGG--
-TGGTGGAGTCTCGGGCCAGCCTGAGCGGGGTCGGAAT---GCAGCGGTCGTGCAACCGGGT------GGAGGAGGCGTT
CAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCCCGTCG-------------------------------------
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>chr1A_1937
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-----CGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGACTGTCGGCGAGTATCGAGTCGTCGTC---CTACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAATCTCGGTCGTCGTCGCGCCGGGCGAGCTCCCC
GCTGCTCGACCCGTGCGAGGAGTGGTGCGCCGCCGCCAACCCCATGTCGTCGCCGCTGCTGCTGCCGTGCCACATGCCAG
GCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCGGAGTACGACTGGTGCGCGATGGAGAAGGCCCGG
CCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGGCCACCCCGACCAAGAGCCTGTGCGGCGGCGG
CTACTCGTCGTCGTCTCT------------GCTCAACTGCCCCAGCTACATGTCCAGCACGCAGTCGTTCGAGGCAAAAG
TGCGGTCGCACAGCGCGCCGAAGCAGCGGCCGGAGCCCCCCACGAACAGGAAGCGGGTGCCGCTGAGCGAGGTGGTGG--
-TGGTGGAGTCCCGGGCCAGCCTGAGCGGGGTCGGAAT---GCAGCGGTCGTGCAACCGGGT------GGAGGAGGCGTT
CAACTTCAAGACGGCCGTTGTCGGCCGCCTCGACCGCCCGTCGACGGGGGCCG---------------------------
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>chr1D_1938
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------GGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGGCTGTCGGCGAGCATCGAGTCGTCGTC---CTACGGG
TACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAATCTCGGTCGTCGTCGCGCCGGGCGAGCTCCCC
GCTGCTCGACCCGTGCGAGGAATGGTGCGCCGCCGCCAACCCCATGTCGTCGCCGCTGCTGCTGCCGTGCCACATGCCAG
GCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCCGAGTACGACTGGTGCGCGATGGAGAAGGCCCGG
CCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGGCCACCCCGACCAAGAGCGTGTGCGGCGGCGG
CTACTCGTCCTCATCTCT------------GCTCAACTGCCCCAGCTACATGTCCAGCACGCAGTCCTTCGAGGCAAAAG
TGCGGTCGCACAGCGCGCCGAAGCAGCGGCCGGAGCCCCCCACGAACAGGAAGCGGGTGCCGCTGAGCGAGGTGGTGG--
-TGGTGGAGTCCCGGGCCAGCCTGAGCGGGGTCGGAAT---GCAGCGGTCGTGCAACCGGGT------GGAGGAGGCGTT
CAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCCCGTCG-------------------------------------
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>chr3D_3006
G-------------------------------------------------------------------------------
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----------------------------------CTTAGGCCAACTCCACCGCGTTACCCTAAACGGACGTCCGGTTTGA
CCGGATTTTATCCTTTTGAGTAGAGCGATGGGATCGTGTG-GGGCCTGTCCTGGGATGCGGTGGCC-TGCGCCCA--GCG
CGCGGCCACATCCGTTTGCCCCATCCTGTCTGCCAGGGCAAAAAATGCTCATATTTTCATATCAAAACTAGTTTGCACGT
CCAAATAT---T---TGTCTGGAAATAAAAATAATTTTACAACCCAACTAAAATTGTCTCTAAT-AAAATAGTTTTATAA
CCAAATCGAAATTGTCTTGACTGAACATAAAATGAACCAATACATCTATTGGTTGCCAATGTGATCCCACACGTGCTCAA
CCAAGTCATTTTGAAGATCCAAGTGAGTGTGCCAATCACGCAGCTCACGGTGGAATTGGATAAACTGTTCAAATGTGGCC
GGTTCTTGGTGCAGGGGCTCAACATTTTCACCTTGGTAATCGAATCCTTGGTCGAAGATACTCTCATCACGCTCGTCCTC
GACGATCATGTTGTGCATATTCACAGAAGCAGTCATCACCTCCCAAAGCTTCGTTTCATCCCATGACAGTGCAGGGTTTC
GAACGATACCCCACCGGGATTGAAG
>chr2B_3007
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----------------------------------CTAAGGACAACTCCACCACGAGACCCCAAACGGAAGTCCATTTTGC
CCGAATTCTGTCCATTTGGGTAGGGAAATGAGGTCGTGTTCGGGCATGTCCTGGGATGCGGTGGCCGTGCACCCA-----
----GCCGCATCCGTTTGCCCCATCTTGTCCGCCAGGGCAAAAAATGCCCATATTTTCATATCAAAACAAGTTTGCACGT
CCAAATAT---TAATTGTTTGAAAATAAAAATATTTTTACAACCCAATCAAAATTGTTTCCAAT-AAAATAGTTTTACAA
CCAAATCAAAATTGTCTTGAATGGACATAAAATGAACCAATACATCTATTGGTTGCCAATGTGATCCCACACGTACTCAA
CCAAGTCATTTTGAAGATCCAAATGAGTGTACCAATCACGCAGCTCACGGTGGAATTGGACAAACTGTTGAAACGTGGTC
GGTTCTTGGTGCGGGGGCTCAACATTTTCACCTTGATAATCAAATCCTTGGTCGAAGATACTGTCATCACGCTCGTCCTC
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCTTCCATCCCATGACAGTGCAGGGTTTC
GAACGATACCCCATCGGGATTGAA-
>chr2B_3007
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----------------------------------CTTAGGCCAACTCCACCTCGCGACTCCAAACGAACGTCCACTTTGG
CTGGATTCTGTCCCTTTGGGTAGGGCGATGGTGTCGTGTCCGGGTCTGTCCTGGGATGCGGTGGCCGTGCGTCCA--GCG
CGCGGCCACATCCGTTTGCTCCATCCCGTCCGACAGGGCCTAAAATGCTCATATTTTCATATGAAAACAAGTTTGCACGT
CTAAATAT---TAATTGTTTGAAAATTAAAATAGTTTTACAACCCAATCGAAGTTGTCTCTAATAAAAATAGTTTTACAA
CCAAATCAAAATTGTGTTGAATGAACATAAAATGAACCAATACATCTATTGGTTGCCAATATGACCCCACTCGTGCTCAA
CCAAGTCATTTTGAAGATCCACATGAGTGTGCCAATCACGCAGCTCACGATGGAACTGGACAAACTGATCAAACGTGGCC
GGTTCTTGGTGCAGGGGCTCAACATTGTCACCTTGATAATCAAATCCTTGGTCGAAGATACTGTCATCACGCTCGTCCTT
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATAACAGTGCAGGGCATC
GAACGATGCCCCATCGGAATTGAAG
>chr5B_3007
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----------------------------------CTAAGGCCAACTCCACCGCGCGACCCCAAACGGACGTCCGTTTTGT
CCGGATTCTGTCCGTTTGGGTAGGGCAATGGGGTCGTGTCCGGGCCTGTCCTGGGATGCAGTGGCCGTGCGCCCA--GCG
CGCGGCCACATCCGTTTGCCCCATCCCGTCCGCCAGGGCCTAAAATGCCCATATTTTCATATGAAAACAAGTTTGCACGT
CCAAATAT---TAATTGTTTGAAAATTAAAATAGTTTTACAACCCAATCAAAATTGTCTCTAATAAAAATAGTTTTACAA
CCAAATTGAAATTGTCCTGAATGAACATAAAACGAACCAATACATCTATCGGTTGCCAATATGCTCCCGCACGTGCTCAA
CCAAGTCATTTTGAAGAGCCTTATGAGTGTGCCAATCACGCAGCTCACGATGGAACTGGACAAACTGATCAAACATGGCC
GGTTCTTGGTGCAGGGGCTCAACATTGTCACCTTGAAAATCAAATCCTTGGTCAAAGATATTGTCATCACGCTCGTCCTC
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATGACAGTGCAGGGTATC
GAACGATGCCCCGTCGGGATTGAAG
>chr4B_3009
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------------------------------------AAGGCCAACTTCACCGCGCGATCCCAAATGGACGTCCGCTTTGG
CTGGATTCTGTCCCTTTGGGTAGGGCGATGGGGTTGTGTCCGGGTCTGTCCTGGGATGCGGTGGCCGTGCTGG-------
-GCGGCCGCATCCGTTTGCCCCATCCCGTTCGCCAGGGCCTAAAATGCCTATATTTTCATATGAAAACAAGTTTGCACGT
CCAAATAT---TAATTGTTTGAAAATTAAAATAGTTTTACAATCCAATTAAAATTGTTTCTAATAAAAATAGTTTTACAA
CCAAATCGAAATTGTCTTGAATGAACATAAAATGAACAAACACATCTATCGGTTGCCATTATGATCCCACACGTGCTCAA
CCAAGTCATTTTGAAGATCCACATGAGTGTGCCAATCACACAGCTCACGAT-GAACTGGACAAACTGATCAAACGTGGCC
GGTTCTTGGTGCATGGGCTCAACATTGTCACCTTGAAAATCAAATCCTTGGTCGAAGATACTGTCATCACGCTCGTCCTC
GACGATCATGTTGTACAAGATCACACAAGCAGTCATCACCTCTCAAAGCTTCCTTTCATCCCATGACAGTGCAGGGTATC
GAACAATGCCCCATCGGGGTTGAAG
>chr1B_3010
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-------------------------------------AGGCCAACTCCACCGCGCGACCCCAAACAGACGTCCGTTTTGC
CCGGATTCTGTCTGTTTGGGTTGGGCAATGGGGTCATGTCCGGGCCTGTCCTGGGATGCGGTGGCCGTGCGCCGAGCGC-
-GCGGCTGCATCCGTTTGCCCCATCCTGTCCACCAGGGCCTAAAATGCCCATATTTTCATATCAAAACAAGTTTGCATGT
CCAAATAT---TAACTGTTTGAAAATAAAAATAGTTTTACAACCCAATCGAAATTGTCTCTGATAAA-ATAGTTTTACAA
CCAAATCAAAATTGTCTTGAATGAACATAAAATGAACCAATAGATCTATTGGTTTCCAATGTGATCCCACACGTGCTCAA
CCAAGTCATTTTGAAGATCCAAATGAGTGTGCCAATCACGCAGCTCACGATGGAACTGGACAAACAGTTCAAACGTGGCC
GGTTCTTGGTGCAGGGGCTCAACATTTTCACCTTGATAATCAAATCCTTGGTCGAACATACTATCATCACGCTCGTCCTT
GATGATCATGTTGTGCGTGATCACACTAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATAACAGTGCAGGGTTTC
GAACGATACCCCATCGGGATTGAAG
>chr2B_3010
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-------------------------------------AGGCCAACTCCACCGCGCGACCCCAAACGGACGTCCGTTTTGT
CCGGATTCTGTCCGTTTGGGTAGGGCAATGGGGTCGTGTCCGGGCCTGTCCTGGGATGCGGTGGCCGTGCGCCCA--GC-
-GCGGCCGCATCCGTTTGCTTCATCTTGTCCGCCAGAGCCTAAAATGCCCATATTTTCATATGAAAACAAGTTTGCACGT
CCAAATAT---TAATTGTTTGAAAATTAAAATAGTTTTACAACCCAATCGAAATTGTCTCTAATAAAGATAGTTTTACAA
CCAAACCGAAATTGTCTTGAATGAACGTAAAACGAACCAATACATCTACCGGTTGCCAATATGATCCCAGACGTGCTCAA
CCAAGTCATTTTGAAGAGCCTTATGAGTGTGCCAATCACGCAGCTCACGATGGAACTGGAAGAACTGATCAAGCGTGGCC
GGTTCTTGATACAGGGGCTCAACATTGTCACCTTGATAATCAAATCCTTGGTCGAAGATACTGTCATCACGCTCGTCCTC
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTTCTTTCATCCCATGACAGTGCAGGGTATC
GAACGATGCCCCATCGGGATTGAAG
>chr6A_3010
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-------------------------------------AGGCCAACTCCACCACGCGACCCCAAACGGACGTCCGGTTTGG
CCGGATTTTGTCCCTTTGGGTAGGGAGATGGGGTCGTGTCCGGGCCTGTCCTGAGATGCGGG-------------GCGC-
-ACGGCCACATCCTTTTGCCCCATCCTGTCTGTCTAGGCCAAAAATGCCCATATTTTCATATCAAAACTAGTTTGCACGT
CCAAATAT---T---TGTCTGAAAATAAAAATAGTTTTACAACCCAATTGAAATTGTCTCTAATAAA-ATAGTTTTACAA
TCAAATCGAAATTGTTTTGACTGAACATAAAATGAGCCAATACATCTATTGGTTGCCAATGTGATCCAACACGTGCTCAA
CCAAGTCATTTTGAAGATCCAAATGAGTGTGCCAATCACGCAGCTCACGGTGGAATTGAACAAAGTGTTCAAATGTGGCC
GGTTCTTGGTGCAGGGGCTCAACATTTTCACCTTGATAATCAAATCCTTGGTCGAAGATACTCTCATCACGCTCGTTCTT
GACGATCATGTTGTGCATGATCACACAAGCAATCATCACCTCCCAAAGCTTTGTTTCATCCCATGACAGTGCAGGGTTTC
GAATGATACCCCACCGGGATTGAAG
>chr4D_3014
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-----------------------------------------CAACTCCACCGCGCGACCCCGAACGGACGTCCGGTTTGG
CCGGATTTTATCCCTTTGG-TAGGGCGATGGGGTCGTGTCCGGGCGTGTCCTGGGATGCGGCGG-CGTGCGCCCAGCGC-
-GCGGCCGCAACCGTTTGCCCCGTTCTGTCCGCCAGGGCA-AAAAAGCCCATATTTTCATATCAAAACTAGTTTGCACGT
CTAAATATTAAT---TGTCTGAAAATAAAAATAGTTTTACAACCCAATCGAAATTGTCTCTAATAAA-ATAGTTTTACAA
CCAAATCGAAATTGTTTTGAATGAACATAAAATGAACCAATACATCTATTGGTTGCCAATGTGATCCCACACGTGTTCAA
CCAAGTCATTTTGAAGATCCAAGTGAGTGTACCAATCACGCAGCTCGCGATGGAATTGGACAAACTGTTCAAATGTGGCC
GGTTCTTGGTCCAGGGGCTCAACATTTTCACCTTGATAATCAAATCCTTGGTCGAAGATACTCTCATCATGCTCGTCCTC
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCGTTTCATCCCATGACAGTGCAGGGTTTC
GAACGATACCCCACCGGGATTGAAG
>SNPs
--S------S-------S----S-S---S-----SSS-SSSS-SSSSSSSSSSSSS-----S------SSS---------
--S----------------------------------------------------S------------------------
----------------------S---------S---------------------------S-------------------
----------------S---------S-------S-----------------------------------------S---
-------SSS----------------------------------------------------------------------
-------------SSSS-S---------------------------------------------------------S---
-------------------S-------------SS---------------------------------------------
------------------S---------------------------------------------SSSSS-----------
------------S-------------------------------------------------------------------
---------SSSSSSSSS----------------------------------------------S---------------
-------------S------------------------------------S-----------------------------
--------SSSSS------------------------------S-----------------------------------S
--------------------------------------------------------------------------------
S---------------------S---------------------------S-----------------------------
---------------S--------S------S------------------------------------------------
----------S-----------------------------------------------------------S---------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------S------------------S--------------------------------S---------------
----------------S---------------------------------------------------------------
-------------S-------------------------------------------------------S----------
----------S---------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-----------------S--------------------------------------------------------S-----
--------------------------------------------------------------------------------
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----S---------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
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----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-S--------------------------------------S------S
-----S-----------------------------------S-------------------S-------S---S-SS---
-SS---------------------------------------------S----------------------------S--
--------------------------------------------------------------------------------
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-------------SS-SSSSSSSSSSSSSSSSSS-----------S--------------------S-S-----------
S--------------------------------S------S--S------------------------------S-----
-------------S-------------------------------------------------S----------------
-------------------S-------------------------------------------S------S---------
------------------S--S--------------------S------------------------------------S
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------S----------------------------------------------------------
-------------------------
>forward_1041
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-------------------------------------------------------------CTGAGTTGCCTTCTCTGGG
G-------------------------------------------------------------------------------
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>reverse_2882
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-TGTTAACCTCTGTGGCTGTGG----------------------------------------------------------
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-------------------------
