>input_sequence_46720
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-------------------------------------------------ATGGAGAGGAAGGAGAGCGGGGAGAAGATGG
AGAAGGTGGAGGTGGGCGACGGCGGGAAGAAGCCGGAGGAGGGGACCAAGCCGGCGACGGCGCCGGTGTGCTTCAAGAAG
CCGGCGGGCGAGGACACCGGCATCCTGGAGACCACCAAGGACTACTTCAAGCAGCTCAAGGACACCAGCGCCGACACGCA
CTGGGACTGCATCAAGAACCGGGTCCGCGCCGCCGGCGAGTACATCTCCAACAAGACCAGCTCGGTAACGCCTCCTCCTT
CCCCTCCCCCTCCTCCCCGTTCCG--TAACGCACGCGCTCCTGCTTTGCCTTGTTCTACTTCTATGCATGTATGTTTGCT
GCTGTTCGATCTTGGCCCGTACGTGTCCTGTGCCTCTGCTCGCTAGATCGTGCGTCTTGTGCTGGTAGAAACACGATGAG
GATCTTAGCCCTCTTGCGGATTTCGCCACATGCGTAGTTCCTAGCCGTTTAATTTCGGAATAATTCGTCGCGTGCTGTTA
CGAAATGTTGCCACTTTTCGTTTCCCCCTTTGTTCCTCGGATCGGAATGCATGTTCTTGTAGCAATCGTTCTGTTTTATT
TTCCTGGCAACCACGTTAAATCGGAAGGGAGTTAGCGTAGATGTAGCAGCGATTTCCGCGAGATCCTTTTTGCACTTTTT
GTCCTGCACGGAGAAGCATCTGGATGATTTTCTTAGATAA-TAGGTGTGCTTCCGCTCGTCTGATTTTGAGGCTGTGCGG
TGAAAACAACCATGTGATGC------TAGTGCAGTGTGGATGAAGTAGCGATTCGTAGATCCTTCGACACTTATTTTTTC
CCTCACGCATTTGGAGGTTTTTTTCTTCTAAGATTGTTATGCTTACGGACAATTCATTGTGCGATAT----ATATAGGTG
GCGATTAACCTGTACAAGGATCCGGATTTCTTGATTCTTGCTGTCAAAGTTGGGGTGACCTTGCTAGTCGCTGCCTCTGT
AAGCATTAGTCAGTCTCTGTCCATGTAGATTTAT-----------------------TT-----------------TTGC
AAGATTCCGTCCTGTGTTCAGAAA-TT-ATTTTTGGAATCTA--GCCTTTTTTGCCGTCAAATGC-TTGTGATCTCTTGA
GAAAGCTTGCCGTACTACTTGTTACAGTAACCCACATTTCGTGCTCTGATGCTATATGTTGTACTAGTAATCTTGTTCTA
AATGATACTGATCCGTTCAGACTTCAGTCATTCGTTGTTGGATTCTGTTCTTATAGCGGCT--GCTGCTGCATATGATTT
CTGAATCTTGGCATGTGAGCTTTCGCTGTTCTGCTTGTGGTGTCACAACACCCCACACATCTAGTTTGCTGTGGTTACTA
CTGATGCCATCTATTGTAGTTTCAG-------------------------AATTCAGAATTCAGATAG------------
------------AATTTCCCAATCCCGATAGCCTATCTGCTGCTATG-TT-CTGATGCATCTGAATAGT---AGTATTAT
GATGGAATCTGAATTCTGATAGCCACTGTGCTACTGTTCTCTGATACGTCTGGTTGAAACTGATTGCTAACCCGTGGCTG
CTTCGTGATGAGTTGCAGGTGTTTGGCAGGCAGAAGGTGGAGCCTGAGGCCAAGGAGGAGACCCCGGGGGCGAAGCCAGA
AGCAGCACCGGCGTCAGGGGAGTCTCAGTGA-------------------------------------------------
--------------------------------------------------------------------------------
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----------
>chr4D_1_TraesCS4D01G056100
GGTAGATAGAGATGCCCCACGTATATAACAATGTGCCACCACGTTTCCCGTGAGGGAGATAGTTTAGATAGAGATGCCCG
TCATGTATGCCGATTCAAAATTCAAAAACG--GATCGCGACGTTGAGTTCGCCGAATCCGGAGCGCAAACGAGAGCATCT
TGTACCCAAAAAGATTGCA---GCACTCCTCAAAACCGAGTCGCCAGAAGCTTCCGTTGGATCCGAGCGCTTGGCGCAAG
ATCGGACGCTCCAAACCGCGCCGCGCACGACAGGGCA-----------GGCGGTACGTAGTACAACC--CTGCGCTGCGC
TGCCACCCTGTTTGCAGCTGCAGCCTTTAGCTGGCCCACACATCTTGACCCCTACGACCCCGGTCACACGATCACATGTC
CACCTGCTACTACTTACTCCGCTGGGCTCGCCATGTCCCTTCCATCTCCACCTGCTACTACTT-----------------
--------------CGCTGGGCCCG-CCTGTCATCGTCTCCGTAGCAGCCTTCCCTCGCGTGAACCCGGTCGCAAACTCC
GCTCGTCGATCACGAGCGCTGCGCCTGCCCGCCCGGGCCCGCGCGCAACCGCCTCTGCAAAAGCCAGCACAGACGCAAGC
ATCCCGGGCCCACGGGTCAGTGAGACCCTTCCGAGATTCCCTCGCCCAAGGAAACGAGACGCTCGTCTTCTCC-------
-CGCAAGAAGCAAC-GGAAAAACCCTGACAAAACCCCGAAGGCGCCGGCGCTGGCCCACCGGTCAGCGTAACGCGCGACG
GCACGAGGGGGGCGCGCCCGTCGAAACGGGAAACCGTGGGCCCAGCACGTCAGCGAGAGGCCAAGGGGAACGGGCCCGCA
TGTCAGAGAAGCTGCGCCGTGCCGTCCCTCCGCGGCTTTCTTTCGTGGATGCCAAGCCAGCGCCCG-----GCTATAAAG
CGAGCCCAGCGCCACCATTGCCCAGAGCACCAGAAGCTTTCTCCTCTCTCCTCTCGGGGTTTCGATCC------------
-------AGTAGGTAGGCGAGGCGA------GGGGTTCGGTCGTCGGTGATGGAGAGGAAGGAGAGCGGGGAGAAGATGG
AGAAGGTGGAGGTGGGCGACGGCGGGAAGAAGCCGGAGGAGGGGACCAAGCCGGCGACGGCGCCGGTGTGCTTCAAGAAG
CCGGCGGGCGAGGACACCGGCATCCTGGAGACCACCAAGGACTACTTCAAGCAGCTCAAGGACACCAGCGCCGACACGCA
CTGGGACTGCATCAAGAACCGGGTCCGCGCCGCCGGCGAGTACATCTCCAACAAGACCAGCTCGGTAACGCCTCCTCCTT
CCCCTCCCCCTCCTCCCCGTTCCG--TAACGCACGCGCTCCTGCTTTGCCTTGTTCTACTTCTATGCATGTATGTTTGCT
GCTGTTCGATCTTGGCCCGTACGTGTCCTGTGCCTCTGCTCGCTAGATCGTGCGTCTTGTGCTGGTAGAAACACGATGAG
GATCTTAGCCCTCTTGCGGATTTCGCCACATGCGTAGTTCCTAGCCGTTTAATTTCGGAATAATTCGTCGCGTGCTGTTA
CGAAATGTTGCCACTTTTCGTTTCCCCCTTTGTTCCTCGGATCGGAATGCATGTTCTTGTAGCAATCGTTCTGTTTTATT
TTCCTGGCAACCACGTTAAATCGGAAGGGAGTTAGCGTAGATGTAGCAGCGATTTCCGCGAGATCCTTTTTGCACTTTTT
GTCCTGCACGGAGAAGCATCTGGATGATTTTCTTAGATAA-TAGGTGTGCTTCCGCTCGTCTGATTTTGAGGCTGTGCGG
TGAAAACAACCATGTGATGC------TAGTGCAGTGTGGATGAAGTAGCGATTCGTAGATCCTTCGACACTTATTTTTTC
CCTCACGCATTTGGAGGTTTTTTTCTTCTAAGATTGTTATGCTTACGGACAATTCATTGTGCGATAT----ATATAGGTG
GCGATTAACCTGTACAAGGATCCGGATTTCTTGATTCTTGCTGTCAAAGTTGGGGTGACCTTGCTAGTCGCTGCCTCTGT
AAGCATTAGTCAGTCTCTGTCCATGTAGATTTAT-----------------------TT-----------------TTGC
AAGATTCCGTCCTGTGTTCAGAAA-TT-ATTTTTGGAATCTA--GCCTTTTTTGCCGTCAAATGC-TTGTGATCTCTTGA
GAAAGCTTGCCGTACTACTTGTTACAGTAACCCACATTTCGTGCTCTGATGCTATATGTTGTACTAGTAATCTTGTTCTA
AATGATACTGATCCGTTCAGACTTCAGTCATTCGTTGTTGGATTCTGTTCTTATAGCGGCT--GCTGCTGCATATGATTT
CTGAATCTTGGCATGTGAGCTTTCGCTGTTCTGCTTGTGGTGTCACAACACCCCACACATCTAGTTTGCTGTGGTTACTA
CTGATGCCATCTATTGTAGTTTCAG-------------------------AATTCAGAATTCAGATAG------------
------------AATTTCCCAATCCCGATAGCCTATCTGCTGCTATG-TT-CTGATGCATCTGAATAGT---AGTATTAT
GATGGAATCTGAATTCTGATAGCCACTGTGCTACTGTTCTCTGATACGTCTGGTTGAAACTGATTGCTAACCCGTGGCTG
CTTCGTGATGAGTTGCAGGTGTTTGGCAGGCAGAAGGTGGAGCCTGAGGCCAAGGAGGAGACCCCGGGGGCGAAGCCAGA
AGCAGCACCGGCGTCAGGGGAGTCTCAGTGAAGGC--GTCCTGAGCTCGTTATCGTCTTCCATGAACCAACCTGAAGCTT
CATTCACTGA--GAGTTGCGAGGTCTTATCAGCCTAAGAGTTTTTCTTTTTCGCTTTGTCCTTGTGTTCGCCTAGTTGGG
ACATGGTTTGCCTGAGCGATTTCGCATTGTAAGACCCGTTC-CTAGTTGTGGATCTTAATCCGGTTGGTGCCGCCGTCAA
TTGCGGTCCGTTTTGGTGACATCTGTTTGTCCTATCACCTATGCTTCATTTT----GTCGAATGGAATGGAAGATCATAT
GATC------------------------------------------------ATGCAGCCTACTTCCTGTCGAGTTTAGT
TGCTTCAGTGTATCC--------TTTCAGCACTAAACTGGCTGAGTGTT-----CTGAATGGAGCCTCGGGCTTTGGACT
GACAATGCAAAGATTTAATGTAT-------------------TGATTTGGTAGCCATTCATCACATTCTCCTGCTATGTT
TCAAATTAACCTGAACTATTAAGCGTGGGGGATAAAGAAGCACCTCGGGCCAAGAAGCAAGTCTAGAATATATCTGAAAA
AGTTTGAAAATGACATAG--------CCGTTGTCTCATTTTGGCAAATACTTTGGTGGGCAGCAGTGGCGTTTTAGGCAA
CTGTAGTGATTC--TTTTTGGTGGAACAAAGAAACACAAACGTACAATAGCAAATATGTGAAATGTCTATGGTAGGGTAG
AATAGTCTTTTTCAACATGGTTAACAGTTTGTATTCTATGATGGTCCGTCGAGAAAAAGATTCGTAATGTATGTCCTTCA
AAAAGGAGCCGCAACGCATGGGGCATGTGTTTGGACACGACCTTGGTAATTTAACCATCCAGTATGTAAATGCCCGTATG
CTCCATCAAACACCTAGGCATGAGAAAATTCAGGCTATTGCCCATACACACTCGGCCCAATGGTAGCTACTCTCTTCTTT
CCTAAATATATGACGTTTTGGTAGTTCACGTCACACATTTAGGAACGTAGGAAGTACATTGGTGTTGCCTCACATGCATC
ATTATTTGTC
>chr4B_29
----------------------------CAATGTGCCATCACGTTTCCGGTGAGGAAGATAGATGAGATAGAGATGCCCG
TCACGTTTGCCGATTCAAATTTCAAAAACGCGA---------------TCGCCGAATCCGGAGCGCAAACCAGAGCATCT
TCTACCCAGAAAGATTGCCGTGCTGCTCCTCAAAACCGAGTCGCTAGAAACTTCCGTTCGATCCGAGCGCTCGGCGCAAG
ATCGGACGCTCCAAACCGCGCCGCGCACGGCAGGGCA-----------GGCGGTACGTACAACCCTGCGCTGCGCTGCGC
TGCCACCCTGTTCGCAGCTGCAGCCTTTAGCTGGCCCACACATCTTGACCCCTACGACC-GGGTCACGCGATCA------
-------------------------------CATCTCCCTCCCTTCTCCGCCTGCTACTACCCCTGTGTGTTACTCTTAC
TCCACGAGTTCGTACGCTGGGCCCGCCCTGTCATCGGCTCAGTAGCAGCCTTC-CTCGCGTGAACCCTGTCGCAAACTCT
GCTCGTCGATCACGAGCGCTGCA-CTGCCCGCCCGGGCCCACCCGCAACCGCCTCAGCAGGAGCCTGCAAAA--GCCAGC
ATCCCGGGCCCACGCGTCAGCGAGGCCTTTCCGAGATTCTCTTGCCCAAGGAAATGAAACGCTCGTCTTCTCGGCTTCTC
GCGCAAGAAGCAAC-GGGAAAACCCTGACAAAACCCCGAAGGCGCCGGCGCTGGCCCACCCGTCAGCCTAACGCGCGACG
GCGCGAGGGC-GCGCGGCCGCCGAAACGGGAAACCATGGGCCCCGCACGTCAGTGAGAGAGGGAGGGCGGCGGGCCCGCC
TGTCAGAGAAGCTGCGCCGTGCCGTCCCTCCGCGGCTTTCTTTCGTGAATGCCAAGCCAGCGTCCGGCTGAGCTATAAAG
CGAGCCCAGCGCCACCATTGCCCGGAGCACGAAAAGCTTTCTCCTCTCTCGGCTGGCTGGGTTGGTTGGTTGGTTGGTTC
GTAGTGTAGTAGGTAGGCGAGGCGAGGCGAGGGGGTTCGGCCGTCGGTGATGGAGAGTAAGGAGAGCGGGGAGAGGATGG
AGAAGGTGGAGGTGGGCGACGGCGGGAAGAAGCCGGAGGAGGGGACCAAGCAGGCGGCGGCGCCGGTGTGCTTCAAGAAG
CCGGCGGGCGAGGACACCGGCATCCTGGAGACCACCAAGGACTACTTCAAGCAGCTCAAGGACACCAGCGCCGACACGCA
CTGGGACTGCATCAAGAACCGGTTCCGCGCCGCCGGCGACTACATCTCCAACAAGACCAGCTCGGTAACGCCTCCTCCTT
CCCCTCCCCCTCCTCCCCGTTCTGT---ACGCACGCGCTCCTGCTTTGCCTTGTTCTGCTTCCATGTT----TGCTTGCT
GCTGTTCGATCTTGGCCCGTACGTGTCCTGTGCCTTTGCTCGCTAGATCGTGCG--------------------------
-----------TCTTGCGGATTTCGTCACATGTGTAGTTCCTAGCCGTTTAATTTCGGAATTATTCGTCGCGTGCTGTTA
CGAAATGTTGCCACTTCGTTTC-CCCCTTTTGTTCCTCGGATCGGAATGCATGTTCTTGTAGGAATCGTCCTGTTTTCTT
TTCCTTTTGTTGTTGTTTGT---------------TGTTGTTGTAGCAGCGATTTTCGCGAGATCTTTTTTGCACCTCTT
GTCCTGCACGGAGAAGCATCTGGATAAATGTTTTA----GGTAGGTGTGCTTCCGCTCGCCTGATTTTGAGGCTGTGTGG
TGAAAACAACCATGTGAATGTGATGATAGTGCAGTGTGGATGAAGTGGCGATTCGTAGATCCTTGGACACTTACTTTTTC
CCTCACGCATTTGGAGATTTCTTTTC-CTAAGATTGTTATGCTTACGGACAATTCATTGTGCGATATATATATATAGGTG
GCGATTAACCTGTACAGGCATCCGGATTTCCTGATTCTTGCTGTCAAAGTTGGGGTAACCTTGCCAGTTGCTGCCTCTGT
AAGCATTAGTCAGTCTCTGTCCATGTAGATTTATTTTCAGTTTTGCTGGAGATTATCTT-----------------TTGC
AACATTTCGTCCTGTGTTCAGAAA-TTTATTCTTGGAATCCTCTGCCCTTTTTGCCGTCAAATGC-TTGTGATCTCTTG-
---AGCTTGCTGTACTACTTGTTACAGTAACCGACATTTCGTGCTCTGATGCTATGTGTTGTATTAGTAATCTTGTTCTA
AATGATAAGGATCCGTTCAGACTTCAGTCATTTGTTGTTGGATTCTGTTCTTATAGCGGCTCTGCTGCTGCATATGATTT
-------------------------------------------------------------------GCTCTGGTTACTA
ATCATGCCACCCATTGTAGTTTCTTGCTGTGCTTCTGTATTTGTTCTGTTAATTCAGAATTCAGATAGGCTTCAGTTATG
GATTCTGTTCTAAATTTCCCAATTCCAATAGCCTATCTGCTGCTATG-TA-CTGATGCATCTGAATAGTAGTAGTATTAT
GATGGAATCTGAAATCTGATGGCCAATCTGCTACTGTTCGCTGATGCGTCTGGTTGAATCCGAGGGCTAACCCGTGGCTG
CTTTGTGATGCGTGGCAGGTGTTTGGCAGGCAGAAGGTGGAGCCTGAGGCCAAGGAGGAGACCCCGGGGGCGAAGCCAGA
AGGGGCACCGGCGGCAGCTGAGACTCAGTGAAGGCTTGTCCTGAGCTCGTGATCGTCTTCCATGAACCAACCTGAAGCTT
CATTCACTGA--GAGTTGCGAGGTCTTATCAGCCTGGAG--TTTTTCTTTTCGCTTTGTCCTTGTGTTCGACTAGTTGGG
GCATGGTTTGCCTGAGCGATTTCGCATTGTAAAAGACCCGTTCTGGCTGTGGATCTTAATCCGGTTGGCGCCGCCGTCAT
TTGCGGTGCGTTTTGGTGACATCTGTTTTGCCATCATCTGTG-------TTT----CTCGAATGGAATGCAAGATCACTT
GGTC------------------------------------------------AT--------------------------
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>chr4A_33
--------------------------------GTGCCATCACGTTTCCGGTGAGGGAGATAGAT-----AGAGATGCCCA
TCACGTTTGCGGATTCAAAATTCAAAAAACGCGATCGCAACGTTGAGTTCCACGAATCCGGAGCGCCAACCAGAGCATCT
TCCACCCAAAAAGATTGCA---CTGCTCCTCAAAACCGAGTCGCCGGAAGCTTCCGTTCGATCCGAGCGCTCGGCGCGAG
ATCGGACGCTCCAAACCGCGCCGCGCACGGCAGGGCCAGGCCACTACCGGCGGTACGTACAACCCTGCGCTGCGCTGC--
---CACCCTGTTCGCAGCTGCAGCCTTTAGCTGGCCCACACATCTTGACCCCTAGGACC-CGGTCACGCGATCA------
-------------------------------CATCTT-----------CACCTGCTACTACTT-----------------
--------------CGCTGGGCCCG-CCTGTCATCGACGCGGTAGCAGCCTTCCCTCGCGTGAACCCCGTCGCAAACTCC
GCTCGTCGATCACGCGCGCTGCGCCTGCCCGCCCGGGCCCACGCGCAACCGCCTCTGCAAAAGCCAGCACACACGCAAGC
GT-CCGGGCCCACGCGTCAGCGAGGCCTTTCCGAGATTCCCTCGCCCAAGGAAATGAGACGC------------------
----AAGAAGCAACGGGAAAAACCCTGACAAAACCCCGAAGGCGCCGGCGCTGGCCCACCGGTCAGCCTAACGCGCGACG
GCGCGAGGGC-GCGCGCCCGTCGAAACGGGAAGCCGCGGGCCCCACGCATCAGTGGGAGGCGGAGGGGAACGGGCCCGCG
TGTCAGAGAAGCTGCGCCGTGCCGTCCGTCCGCGGCTTTCTTTCGTGGATGCCAAGCCAGCGCCCGGC-----TATAAAG
CGAGCCCCGCGCCACCATTGCCCAGAGCACCACAAGCTTTCTCCTCCCTCGGCTGGTTGGGTTGGTTGGTTGTAGCGTAG
CCTCTGTCCTCTCTCCTCTC----------GGGGGTTCGGTCGTCGGTGATGGAGAGGAAGGAGGGCGGGGAGAAGATGG
AGGAGGTGGAGGTGGGCGACGGCGGGAAGAAGCCGGAGGAGGGGACCAAGC------CGGCGCCGGTGTGCTTCAAGAAG
CCGGCGGGCGAGGACACCGGCATCCTGGAGACCACCAAGGACTACTTCAAGCAGCTCGGGAACACCAGCGCCGACACGCA
CTGGGACTGCATCAAGAACAGGGTCCGCGCCGCCGGCGAGTACATCTCCAACAAGACCAGCTCGGTCACGCCTCCTCCTT
CCCCTCCCCCTGCCCTCCCCTCCTCCTAACGCACGCGCTCCTGCTCTGCCTTGTTCTACTTCTATGCACGTCTGCTTGCT
GCTGTTCGATCTTGGCCCGTACCTGTCCCGTGCCTCTGCTCGCTAGATCGTGCGTCTCGTGCCGGTAGGAACACGATAGG
AATCTTAGCCCTCTTGCGGATTTCGTCACATGTGTAGTTCCTAGCCGTTTAATTTCGGAATAATTCGTCGCGTGCTGTTA
CGAAATGTTGCTACTCTTCGTTTCCCCCTTTGTTCCTCGGATCGGAATGCATGTTCTTGTAGCAATCGCTCTGTTTTATT
TTCCTGGCAACCACGTTAAATCGCAAGGGAGTTAGTGTAGATGTTGCAGCGATTTTCGCGAGATCTTTTTTGC--CTTTT
TTCCTGCACGGAGAAGCATCTGGATGATTTTTTTAGATGGGTAGGTGTGCTTCCGCTCGCCTGATTTTGAGGCTGTGCGG
TGAAAACAACCGTGTGATGC------TAGTGCAGTGTGGATGAAGTAGCGATCCGCAGATCCTTCCGCACTTATTTTTTC
CCCTCGAGCATCT--GGATTTTTTTTTCTAAGATTGTTATGCTTACCGGCAATTCCTTGTCCGATA----TATATAGGTG
GCGATTGACCTGTGCAGGCATCCGGATTTCTTGATTCTTGCTATCAAAGTTGGGGTGACCTTGCTAGTCGCTGCCTCTGT
AAGCATTAGTCAGTCTCTGTCCATGTAGATTTAT-----------------------TTCTGCTGGAGATTGTCTTTTGC
AAGAGTTCGTCCTGTGTTCAGAAACTT-ATTCTTGGAATCCA--GCATTTTTTGCCGTCAAATGCTTTGTGATCTCTTGA
GAAAGCTTGCCGTACTACCTGTTACAGTGACCCACATTTCTTGCTCTGATGC--TGTGTTGTAGTAGAAATCTTGTTCTA
AATGATAAGGATCCGTTCCGACTTCAGTCATGCGTTGTTTGATTCTGTTCTTACAG------------------------
--------------------------------------------------------------------------------
CTGATGCCATCTATTGTAGTTTCTTGCTATACTTCTGTATTTGCTCTGTTAACTCAGAATTCAGATAG------------
------------AATTTCCCAATTCCGA-AGCCTGTCTGCTGCTATG-TT-CTGATGAATCTGAATAGA---AGTATTAT
GATGGAATCTGAATTCTGACAGCGAATCTGCTACTGTTCTCTGATGCGTCTGGTTGAATCTGATGGCTAACCCGTGGCTG
CTTCGTGATGAGTTGCAGGTGTTTGGCAGGCAGAAGGTGGAGCCTGAGGCCAAGGAGGAGACCCGGGGGGCGAAGCCAGA
AGCAGCACCGGCGGCAGCTGAGTCTCAGTGAAGGC--GTCCTGAGCTCGTGATCGTCTTCCATGAACCAACCTGAAGCTT
CATTCACTGA--GAGTTGCGAGGTCTTATCAGCCTAAGAGTTTTTCTTTTTCTCTTTGTCCTTCTGTTCGCCTAGTTGGG
ACATGGTTTGCCTGAGCGATTCCGCATTGTAAGACCCGTTC-CTAGCTGTGGATCTTAGTCCGGTTGGTGCCGCCGTCAT
TTGCGGTGCGTTTTGGTGACATTTGTTTGTCCTATCACCTATGCTTCATTTT----GTCGTATGGAATGGAAGATCATAT
GATC------------------------------------------------ATGCAGCCTACTTCCTGTCGAGTTTAGT
TGCTTCAGTGTATCC--------TTTCAGCACTAAACTGGCTGAGTGTTCCGTTCTGAATGGAGCCTTGGGCTTTGGACT
GACAATGCAAAGATTTAATGTAT-------------------TGATTTGGTAGCCATTCATCACATTCTCCTGCTATGTT
TGAAATTAACCTCAACTATTAAGCGTGGGGGATAAAGAAGCACCTCGGGCCAAGAAGCAAGTCTAGAATATATCTGAAAA
AGTTTGAAAATGACATAG--------CCGTTGTCTCATTTTGGCAAATACTTTGGTGGGCAGCAGTGGCGTTTTAGGCAA
CTGTAGTGATTTTTTTTTTGGTGGAACAAAGAAACACAAACGTACAATAGCAAATCTGTGAAATGTCTATGATAGGGTAG
AATAGTCTTTTTCAACATGGTTAAAAGTTCGTATTCTATGATGGTCCGTCAAGAAAAAGATTTGTAATGTACGTCCTTCA
AAAAGGAGCCGCAACGCGTGGGGCATGTGTTTGGACTCGACCATGGTAATTTAACCATTCAGTATGTAAATGCCCGTATG
CCCCATCAAACACCTAGGCATGAGAAGATTCAGGCTATTGTCCATACACGCTCGGCCCAATGGTAGCTACTCTCTTCTTT
CCTAAATATATGACGTTTTGGTAGTTCATGTCATACATTTAGGAACGTAGGGAGTACATTGGTGTTGCCTCACATGCATC
ATTATTTGTC
>chr4D_2096
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--AAGCTTGCTGTACTACTTATTACAGTAACCCACATTTCATGCTCTGATGCTATGTGTTGTAGTAGTAATCTTGTTCTA
AATGATAAGGATCCGTTCAAAAATCAGCCATTCTTTGGTGGGTTATGTTCTTATAGCGGCT--GCTCCTGCATATGATTT
CCGAATCTTGGCATGTGAGCTTTCGCTGTTCTGCTTGTGGTGTCACAACACCCCACATATCTAGTTTGCTCTGGTTACTA
CTGCTGCCATCTATTGTAGTTTCTTGCTGTACTTCTGTATTTGCTCTGTTAATTCAGAATTCAGATAGGCTTCAGTTATG
GATTCTGTTCTAAATTTCTCAATTCCGATAGCCAATCTGTTGATGTATTT-CTGATGCATCTGAGC---------ATTAT
GATGGG---------------------------------------------------ATCTGATGGCTAACCTGTGGCTG
CTTTGTGATGCGTGGCAGGCGTTTGGCAGGAAGAAGGTGGAGCCTGAGGTCAAGGAGGAGACCCCGGGCGCGAAGCCAGA
AGCAGCAGCAGGGGCAGCTGAGTG--------------------GCTCGTGATCGTCTTCCATGAACCTGAAGG------
--TTCACTGA--GAGTTCCGAGGTCTTATCAGCCTAAGAGTTTTTCTTTTTCGCTTTGTCCTTCTGTTCGCCTAGTTGGG
ACATGGTTTGCCCGAGCGATTTCGCATTGTAAGACCCGTTCTAGTCA--TGGATCTTAATCCGGTTGGTGCCGCCGTCAT
TTGCGGTGCGTCTTGGTGACATCTGCTTCGCCATCATCTGTG-------TTTAATTGTCGAATGGAATGCAAGATCACTT
GGTCGTCAAGTTCTCTGCGCAATGCGATCTGGTCTTGTTCTGGTTCTTCTTGATGCTACCTACTTCCTGTTGATCTTCAG
CGTTGATCTTCCGTGTTGCTCTATTTCAGCACTTCAGTGGCTGCGTGTT-----GTGAAGCCTTGG--------------
----ACGCAAAGATTTACTGTACACCGTTTTGAGGAAGCAAATGATTTGGTAGCCATTCATCACATTCTCCTTCTATGTT
TCAAATTGACTTGAGCAGTTAAGCGTGGTGG-TATAGAAGTGCCTCCGCCCAATAAGCAAGTCCAGAATATATCTGAAAA
AGTTTTAAAATGACATGGCGACTGTTCCGTTCTCTCATTTTGGCAAATACTTTGGCGGGCAGCGGTGTCCTTTTAGGCAA
CTGTAGTG------------------------------------------------------------------------
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>chr4A_2096
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--AAGCTTGATGTACTACTTATTATAGTAACCCACATTTCGTGCTCTGATGATATGTGTTGTAGTAGTAATCTTGTTCTA
AATGATAAGGATCCGTTCAAACATCAGTCATTCTTTGGTGGGTTCTGTTCTTATAGCGGCT--GCTGCTGCATATGATTT
CCGAATCTTGGCATGTGAGCTTTCGCTGTTCTGCTTGTGGTGTCACAACACCCCACATATCTAGTTTGCTCTGGTTACTA
CTGATGCCATCTATTGTAGTTTCTTACTGTACTTTTGTATTTACTCTGTTAATTCAGAATTCAGATAGGCTTCAGTTGTG
GATTCTGTTCTAAACTTCTCAATTCCGATAGCCAATCTGCTGCTGTT-TTACTGATGCATCTGAGC---------ATTAT
GATGGG---------------------------------------------------ATCTGATGGCTAACCCGTGGCTG
CTTTGTGATGTGTGGCAGGCGTTTGGCAGGCAGAAGGTGGAGCCTGAGGTTAAGGAGGAGACCCCGGGGGCGAAGCCAGA
AGCAGCAGCGGGGGCAGCCGAGT--------------------AGGTCGTGATCGTCTTCCATGAACCTGAAGC------
--TTCTTTCACTGAGTTGCGAGGTCTTATCAGCCTAAGAGTGTTTCTTTTTCGCTTTGTCCTTCTGTTCGCCTAGTTGGG
ACATGGTTTTCTCAAGCGATTTCGCATTGTAAGACCCGTTCTAGTCA--TGAATCTTAATCCGGTTGGTGCCGCCGTCAT
TTGCGGTGCATTTTGGTGACATCTGTTT----------------------------------------------------
--------------------------------------------------------------------------------
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----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------S-------------S-S---------------
---S--S-------------------------------S-------------------------------S---------
-S--------------------SSS---------------------------------S------------S--------
-----------------------------S-----------------------------SS--SSSS-------------
------------S----------------------------------------------S-------S------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----S--S------------------------------------
------------------------------------S---S--------------------------S------------
----------------------------------------S------------------------------S--------
--------------S-----S---S--S--------------------------S-----------------S-------
-------------------------------------------------------------------S------------
--S------SS--------------------------------S---------S-------SS----------------S
--------------------------------------------------------------------------------
--------------------------------S-----------------SS--S-SS-SS-S-S-SS------------
--------------------------------------------------------------------------------
---------------------------------------------------S----S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--S--S-----
---------------------------------------------------------S----S-----S--------SS-
S------------------------S------S-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------S-------------------S---------S---------S----
-------------------------------S------SS-------------------S--------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
----------------S-S-------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------------------S--------S---------------------------------------
-------------------------------------------------------S-------S----------------
-------SS-----------------------------------------------------------------------
-S-------------------------------------------------------S------------S---------
-----------------------SS-------------------------------------------------------
-----------------------S--------------------------------------------------------
-------------------------S-S-----------------S------------S-----S---------------
--------------------------------------------------------------------------------
-------------S---SS-------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------------------------S
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------------------------------------S---------------S--------
------------------------S----S--------------------S-----------S--------S--------
-----------------S------------------S-----S---------------S---------------------
-S------------------------S-------------S--------S------------------------------
----------------------------S----S-----------------S----------------------------
----------
>forward_632
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----------------------------------------------------CTCTGCAAAAGCCAGCACAG--------
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>reverse_2584
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-----------------------CCCGATAGCCTATCTGCTGC-------------------------------------
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>forward_1509
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-------------------------------------------------GTGCGTCTTGTGCTGGTAGA-----------
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>reverse_2819
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------------------GGAGTCTCAGTGAAGGCGTC------------------------------------------
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----------
>forward_1756
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CGCGAGATCCTTTTTGCACT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_3698
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATGGGGCATGTGTTTGGACA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
