>input_sequence_46687
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--------------------------------GCCGCCCGCTGCGCGCAGGAAGGTCCGATCCGATCATCCATCATACGC
CCTAT---CGTGCCGAAGCAGCGACGAGAGGCTTCCGCGCCACGCCGCAACAGAG-GGCGTGTGTTTGTTTGGGCGGATT
TCGGCGGGGAATTCGGCGGCGTGGTGGTGG-TAGAGCGAGAGGGAGCAGCAGACATGGGGCGCGCGCCGTGCTGCGACAA
GGCGAGCGTGAAGAGGGGGCCGTGGTCGCCGGAGGAGGACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCG
GTAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGT----ACGTGTGGCCGCGGCGCGTGCTGCAGTAATCGA---CCTG
CCCGGAGCTAGCCTAGCCTGC--------CGGTGCCGGGGACGGACTAGATAGGGATCGATCGCTGCA----GGCCGGCG
TCGTCCTTTTGCAGTTCGAGGAGCTTCCTAATT----------------------TTCCATGGTTGCTAAAGCTTTGA-C
GTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGCCGGCTGAGGTGGCTCAACTATCTCCGGCCGGACATCAAGCAC
GGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTCCCTCTACAACTCCATCGGAAGCAGGTAAAACGATTTAGCTGA
GCGCATATGCACTGAATCGCATGCGGATTCCCAAGCGTCCCGTCAGATTTGTTTGTAGCTGCCACTCCTGCAGTA-TGTC
ACGTAATTGACTGATCGTCTCTCTCTG-TGTGCGTGCCCAACCTGCAGGTGGTCTATCATCGCGTCCAAGCTTCCCGGCA
GGACGGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGGCCATGGCCATGCACCACCACCAGCAGCAG
CACTACCACCACCATGGCACCGCCGGCCGGGGACATGCCGGCGGCGCGACGATCGCCACGCCACCGCCCGCCCCGCAGAG
CCAATGCGCATCATACATGCAGCCGTCGCCCGCGTCCGCCTCGTCCGCCGTCACCACCGCGAGCGGCGACGCGGGCAGCT
TCGGCGCCATGTACTCCCCATCCCACCAGGCCGCGCCACTCGGTCACTACAACGTCAACACCGCGGCGCCGCTCGCCGAA
TTCTCGGCCATGCCGACGCCGGCCGCCGCCAACAGCTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCT
CGTCGGGGGCGGGGACTTCTCCCAGGCGGACCTGTTCGGCGGGTTCGGGGCGTCGCTGCTGCAAGCGCAAGACAGCAGGG
CGCAATCGTCCCTGCAGGAGCTCTCCGCCTGCTACTTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGCCGCCGACCAC
GTCAACGTCAAGCCGCCGGGCGCCGGCCTGTGCCCCAGCCTGACATGAGAAACAAAACCAAGCCACGCACTAATGTCACC
GCATCCATGCGCAAGATGTTCATGCCGAGCTAGTCGTCGGTCTCCGTAGTTGCAGG----CTGGCTGGCGCCGCCTTGCC
CCTCTTCATTTTCTGTGTCCATGAGATGGATCATTACATGTACATTATCTTATCCGCCACT-----GCTATGTCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAGATGA
TGAGCTAGATTTGGATTCCCTCCCAATTTGCTTGCTT-------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>chr3D_1_TraesCS3D01G265100
ATGCCCTAGCTATGCTCTTTGTTTAGTACGGTGCTTATCTGCATGCATGGGCACGAGTTTGACAGACGACGCAAAGCACT
GCGGTTTTCGTGGATCGGGGAGGAGCAGCATCACCGCATTCGTCTGACTCAAGAA-CTGACGCACTCGTCACAAGCAGCC
ACGATTGGATTTTA---CTAGAAGATTTCAGAGATCCATCAGCTTAGCTATACTGTTGTGGCGAGAATTATTTTTTCAGC
TCGGGAGATCTGTGATGATCGCTCCTCGCATGCTCAACTCAACTGCTCCCCTTTGGAATCGGTTTCAGCCCTGCGTCAGT
TTGACTCTGAAACTGGA----ATCCGTGACCGGGTGCGACATTTCATCAGAATTTCAGTGCCACCACACACGGGATCTGG
AGCTAGCGAAGGCATGACGTCCGCCAAGAAACGCAGG---GAAGCTCAGGCGGCCGCTAA---CCACGCGTCTTCCATCT
GATCCATCCACTGAAAGAACACCCCGAAATGTGGAGCACATTTGGCACGAAACGCAGACGGGCCGCATAGCAGCTTCCCA
GATGGATTTTTCTAAGGGCATCTCCTCCGCGTGACCGACTAAAGCCGAGCAACAAGTG----GTCGAT----CGTCTCGC
GCACAAGTACAGACGGAGGA--ATTATAGT------A-------TGACCACTGACGCCCAGAAGTAGAAGAGAAGCGACC
CCCGAAATTAGATGGCAGTCAACAGCAGCAACCCGATAATACGCGCGCGAAACCAAATTTATTTCATTTTTTGGAATACG
GCCACGGAGAGGGACAATGCTACGGTCGAGGGGGGAGAGACAGAGACGGCGTCGTCGCGATAATGGTCGTACCACGTAGG
TACGTAC---GCGGCTCCACCCCCCACCCACCCAACCCCCCTGATTGCTCAGACGCCCAGTATAAAAC---GCGCGCCCC
CTCCA------------TAGCCTTG-----GCTGCCTTCCATCTGCTGCGCTGC--------AACACCGCGAGTCCGCAT
CGCACAGCACCACCCGCAC----ACCCAGCTCGCCGCCCGCTGCGCGCAGGAAGGTCCGATCCGATCATCCATCATACGC
CCTAT---CGTGCCGAAGCAGCGACGAGAGGCTTCCGCGCCACGCCGCAACAGAG-GGCGTGTGTTTGTTTGGGCGGATT
TCGGCGGGGAATTCGGCGGCGTGGTGGTGG-TAGAGCGAGAGGGAGCAGCAGACATGGGGCGCGCGCCGTGCTGCGACAA
GGCGAGCGTGAAGAGGGGGCCGTGGTCGCCGGAGGAGGACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCG
GTAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGT----ACGTGTGGCCGCGGCGCGTGCTGCAGTAATCGA---CCTG
CCCGGAGCTAGCCTAGCCTGC--------CGGTGCCGGGGACGGACTAGATAGGGATCGATCGCTGCA----GGCCGGCG
TCGTCCTTTTGCAGTTCGAGGAGCTTCCTAATT----------------------TTCCATGGTTGCTAAAGCTTTGA-C
GTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGCCGGCTGAGGTGGCTCAACTATCTCCGGCCGGACATCAAGCAC
GGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTCCCTCTACAACTCCATCGGAAGCAGGTAAAACGATTTAGCTGA
GCGCATATGCACTGAATCGCATGCGGATTCCCAAGCGTCCCGTCAGATTTGTTTGTAGCTGCCACTCCTGCAGTA-TGTC
ACGTAATTGACTGATCGTCTCTCTCTG-TGTGCGTGCCCAACCTGCAGGTGGTCTATCATCGCGTCCAAGCTTCCCGGCA
GGACGGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGGCCATGGCCATGCACCACCACCAGCAGCAG
CACTACCACCACCATGGCACCGCCGGCCGGGGACATGCCGGCGGCGCGACGATCGCCACGCCACCGCCCGCCCCGCAGAG
CCAATGCGCATCATACATGCAGCCGTCGCCCGCGTCCGCCTCGTCCGCCGTCACCACCGCGAGCGGCGACGCGGGCAGCT
TCGGCGCCATGTACTCCCCATCCCACCAGGCCGCGCCACTCGGTCACTACAACGTCAACACCGCGGCGCCGCTCGCCGAA
TTCTCGGCCATGCCGACGCCGGCCGCCGCCAACAGCTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCT
CGTCGGGGGCGGGGACTTCTCCCAGGCGGACCTGTTCGGCGGGTTCGGGGCGTCGCTGCTGCAAGCGCAAGACAGCAGGG
CGCAATCGTCCCTGCAGGAGCTCTCCGCCTGCTACTTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGCCGCCGACCAC
GTCAACGTCAAGCCGCCGGGCGCCGGCCTGTGCCCCAGCCTGACATGAGAAACAAAACCAAGCCACGCACTAATGTCACC
GCATCCATGCGCAAGATGTTCATGCCGAGCTAGTCGTCGGTCTCCGTAGTTGCAGG----CTGGCTGGCGCCGCCTTGCC
CCTCTTCATTTTCTGTGTCCATGAGATGGATCATTACATGTACATTATCTTATCCGCCACT-----GCTATGTCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAGATGA
TGAGCTAGATTTGGATTCCCTCCCAATTTGCTTGCTTGCCACTGTTGGGTTCTGCCTACCAAGTACCAACCATGCAGTCC
GATCACTGTGCGAGCTTGAGTTAGTGCGATCGATGTGACCTGGACATGGCTCTGTCAAATCCGAATCCCCCTTGGAGATT
GATTTGGTAAAGTCGCCCTAGTTCTCGCGCCCAAGTCCGCCTCTAGTCCGAGTAGCCAATCACTCGTCGACTTAAAGAAC
CTGTAGTGAGAGAGACTGTA---TAT----------------------CACACACACTGCTGAGAATAAATACTTAGGAA
CGGAGGGAGTATGTGTTTGATCCGTATGTAGTCACTTGTTTGATCAATTCGTACAGCTG---TTGCTTGGTCCGATGGAG
CTAAAAAGCTAGGCAGGGGGTCCGGCAACGAGAAGCGCATGATGTACCGCGCAAGTTCTCGGTGTGACGCGCTGGATGAA
GGCGACGAACCGAAGCTGGGCCGGG------CGGTGCCGTGTGTACGTGCGCGCGATGGACCA--------GGTCGATCG
GTCATGGGGCTCGCATATGCTTTGCATGGGCGGCAGCCAGTGTCATGCACGGACCCGGCCGTTAAGCCCATCATGGACAT
GGAGCGAGGCGAAGAAAGAAAAATGCACCCAGCTAGCTACTCCCTCTCCCATAATATAAGAGTTTTTTTTGACACTACAC
TAGTATAAAAATCGTTCCTATATTATAAGACGGAGGGAGTAATTAACAGGCGTGTGGATGCAAGCGAGCAACCGG-----
---ACCGGACGGATGATTAGATTAGATTCTCCTTCTCCATGTAGCAAGCCAATCACCACGCCACGCATTTGATTA--CTC
GACCTCCCGCAAAAAATGAGAAGTGCTAGCACTATTTGATTACTCGATCTTATATTAACC--------------TATGTC
CATCGGCCTGGTCTGTTGAAGCACATGGGCAATGGATTAAGGCGCTTAACTTTTTTTTGAGGGAGATTAAGGCGCTTAAC
TAGCATGTGGAGTAGCATGCATAGTGGTCACGTTTAGTTAGGCGCGTGCCGTCCCATTTTTCT
>chr3A_1
ATGCCCTAGCTATGCTCTTTGTTTAGTACGGTGCTTATCCGCATGCATGGGCGCGAGTTTGACAGACGAAGCAAAGCACT
GCGGTTTTCGTGGATCGGGGAGAAGCGGCATCACCGCGTTCGTCTGGGCTCTGAAGCTGACGCACTCGTCATCACAAGAC
ACAATTGGATTCTACTCCTAGTAGATTTCAGAGATTGATCAGCTTGGCTATACTGCCGCGGCGAGAATATTGGTGCAGTT
CGGGGTGCGCCATGGCTCG------------------CTCACCTGCTCCCCGTTCG-ATCGGTTTCAGCCCTGCGTCAGT
CTGACTCTGAAACTGGATCGGATCCGTGACCGGGTGCGACATTTCATCAGAGTTTCAGTGCCACCACACGCGGGATCGAT
CGGGGGCGAAGCCATGACGTCCGCCAAGAAACGCGGAGAAGAAGCTCAGGCGGCCGCTACTACCCACGCGTCTTCCATCT
GATCGATCCACTGAAGGGAAACCCCGAAATGTGGAGCACATTTGGCACGAAACGCAAACGGGCCGCACCGCAGCTCCCCA
GATGGATTTTTCTAAGCACATCTCCTCCGCGTGACCGA----------GCAACAAGTGGCCGGTCGAT----CGTCTCGC
GCACAAGTACAGAGGGAGGA--ATTATATATGACCGA-------TGCCCACTGACGCCCAGAAGTAGAAGAGAAGCGACC
CCCGAAATTAGATGGCAGTCAACAGCAGCAGCCCGATAATACGCGCGCGAAACCAAAATTTATTTGGAAA----AATACG
GCCACGGAGCGGGACAATGCTACGGTCGAGGGGAGAGAGACAGAGACGGCGTCGTCGGGATAATGGTCGTACCACGTAGG
TACGTAC---GCGGCCCCACCT-CCACCCACCCAAGCCCCCTGATTGCTCAGACGCCCGGTATAAAAGGCGGCGCGCCCC
CT-CCCTGCAAGCCTACTAGCCTTG-----TCTGCCTTCCATCTGCTGCGCTGC-----TGCAACACCGCGAGTCCACAA
CGCACAGCACCACCCACACCG--ACCCAGCTCGCCGCCCGCTGC----AGGAAGGTTTGATCAAT----C---CATACGC
CCTGCCTCCGTGCCGCGGCAGCGACGAGAGGCCTCCTTCCTGCTCGCGCGCGGGCCGGCCTGTGTTTTCTTGGGCGGATT
TAGGCGGGGAATTCGGCGGCGTGGTGGTGG-TAGAGCGAGAGGGACCAGCAGGCATGGGGCGCGCGCCGTGCTGCGACAA
GGCGAGCGTGAAGAGGGGCCCGTGGGCGCCGGAGGAGGACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCG
GCAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGTGCGTACGTGTAGCCGCGGCGCGTGCTGCAGCAATCGCCGCCCCG
GCCGGCGCTAGCCTGGCCTGCCGGTGCGGCGGTGCCGGGGAAGGACTAGATAGGGATCGATCGCTGCCGGCCGGCCGGCG
TCGTCCTTTTGTGGTTCGAGGAGCTTCCTAATT----------------------TCCCATGGTTGCTAAGCTTTGATTC
GTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGCCGGCTGAGGTGGCTCAACTACCTCCGGCCGGACATCAAGCAC
GGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTCCCTCTACAACTCCATCGGAAGCAGGTAAACCGATTTAGCTGA
GCGCATGTGCACTGAATCGCATGCTGATTCCAAAGCGTCCCGTCAGATTTGTTTGTAGCTGCCACTCCTGCAGTATTGTC
ACGTAATTGACTGATCGTGTCTCTCTGGTGTGTGTGCCCGACCTGCAGGTGGTCTATCATCGCGTCCAAGCTTCCCGGCA
GGACGGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGGCCATGGCCATGCACCAG---CAGCAGCAG
TACCACCACCACCACGGCACCGCCGCCCGGGGACATGCCCGCGGCGCGACGATCGCCACGCCACCGCCCGCCCCGCAGAG
CCAATGCGCATCGTACATGCAGCCGTCGCCCGCGTCCGCCTCGTCCGCCGTCACCACGGCGAGCGGCGACGCGGCCAGCT
TCGGCGCCATGTACTCCCCGTCCCACCAGGCCGCGCCACTCGCTCACTACAACGTCAACGCGGCGGCGCCGCTCGCCGAA
TTCCCGGCCATGCCGACGCCGGCCGCCGCCAACAGCTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCT
GGTCGGGGGCGGCGACTTCTCCCAGGCGGACCTGTTCGGCGGGTTCGGGGCGTTGCTGCTGCAAGCGCAAGACAGCAGGG
CGCAATCGTCCCTGCAGGAGCTCTCCGCGTGCTACTTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGACGCCGACCAC
GTCAACGTCAAGCCGCCGGGCGCCGGCCTGTGCCCCAGCCTGACATGAGAAACAAAACCAAGC----CACTAATGTCAGC
GCATCCATGCGCAAGATGTTCATGCC----TAGTCGTCGATCGCCGTAGCTGCTGGCTGGCTGGCTGGCGCCGCCTTGCC
CCTGTTAATTTTCTGTGTCCATGAGATGGATCATTACATGTACATTATCTTATCCGCCACTCCACTGCTATGTCATACTC
CCTCCGTTCCAAAATATAGCGCGCCCACGCTTTTCGAGGTTCAACTTTGACCATAAATTTAACCCACAAGACCGACTACG
GCGGGATCAAAAATTATATAATTAAAAACTTTTTTGAATACGAATTCATTGGTATAATTTTTTCGCCCGCCGCAGTCGGT
CTTGTTGATTAAATTAATGGTCAAAGTTGAAGCACGGAAATCGAGGACGCGCTATATTTTGGAACGGAGGGAGTAGATGA
TGAGCTAGATTTGGATTCCGTCCCAATTTGC--------CACTGTTGGGTTCTGCCTACCAAGTACCAACCATGCAGTCC
GGCTACTGTGCGAGCTTGAGTTAGTGCGATCGATGTGACCTGGACATGGCTCTGTCAAATCCGAATCCCCCTTGGAGATT
GATTTTGTAAAGTCGTCCTAGTTCTCGCGCCCAAGTCCGCCTCTAGTCTAAGTAGCCAATCACCAGTCGACTAAAAGAAC
CTGTAGTGAGAGAGACTGTA---TATCACACACACACACACACACACACACACACACTGCTGAGAATAAATACTGTACGT
ATGTAC-----------------TATG---------TGTTTGATCAATTCATATGGCTG---TTGCTTCGTCCGATGGAG
CTAAAAAGCTAGGCAGGGGG-CCGGCAACGAGAAGCGCATGATGTACCGCGCAGGTTCTTGGTGTGACGCGCTGGATGAC
GGCGACGAACTGAAGCTGGGCCGGGCGGTGCCGGTGCCGTGTGTACGTGTGCGCGATGGACCA--------GGTCGATCG
ATCATGGGGCTCGCATATGCTTTGCATGGGCAGCAGGCAGTGTCATGCACGGACCCGGCCGTTAAACCGATCATGGACAT
GGAGCGAAGCGAAGAAAGAAAGATGCACCCAGCTAGG---TTAGC-----------------------------------
-------------------------------------------TAGCAGGCGCGTGGATGCAAGCGAGCAACCGG-----
---ACCGGACGGATGATTAGATTAGATTCTCCTCCTCCATGTAGCAAGCCAATCACCACGCCACGCATTTGATTA--CTC
CATCTTATAGAG----------------------------------------TACTACCC--------------TATGTC
CATCGGCCTGGTCTGTTGAAGCACATGGGCAATGGATTAAGGCGCTGCCAAGATTG-------------------TTAAC
TAGCATA-----------GCATAGTGGTCACGTTTAGTTAGGCGCGTGCCGTCCCGTTTTTCT
>chr3B_551
--------------------------------------------------------------------------------
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----GATTTTTCTAAGCACATCTCCTCCGCGTGACCGAC----------CAACAAGTGGCCGATCGATCGTCCGTCTCGC
GCACAAGTACAGATGGAGGTTCATTATAGT------ATGACCACTGCCCACTGACGCCCAGAAGTAGAAGAGAAGCGACC
CCCGAAATTAGATGGCAGTCAACAGCAGCAACCCGATAATACGCGCGCGAAACCAAAATTTATTTGAAAA----AATACG
TCCACGGAGCGGGACAATACTACGGTCGAGGGGAGAGAGACAGAGACGGCGTCGTCGGGATAATGGTCGTACCACGTAGG
TACGTACTACGCGGCCCCACCCCCCACCCACCCGACCCCCCTGATTGCTCGGACGCCCAGTATAAAAC---GCGCGCTCC
CTCCCCTGCAAGCCTACTAGCCTTGGCTTTGCTGCCTTCCATCTGCTGCGCTGCAAGCCTGCAACACCGCGAGTCCGCAT
CGCACGGCACCACCCGCACCAACACCCAGCTCGCCGCTGCGCCC----AGGAAACTTTGATCGATCCATC---CATACGC
CCTGTCGTGCCGCAGCGGCAGCAACGAGAGGCTTCCGCGCCGCGCCTCAACGGCAGGCTCGTGTTC-GTTTCGCCGGATT
TCGGTGGGGAATTCGGCGGCGTGGTGATAGCTAGAGCGAGAGGGAGCAGCAGGCATGGGGCGCGCGCCGTGCTGCGACAA
GGCGAGCGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGGACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCA
GCAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGT----ACA-----------CGCGTGCTGCAGTAATCGCCGC----
GCCGGAGCCAGCCTAGCCTGC--------CGGTGCCGGGGACGGACTAGATAGGGGTCGATCGCTGCCGG--------CG
GCGTCCTTTGTTAATTCGAGGACATAAAGCCGGCCATCGAGCTTCCTGATTTTCCTTCCATGGTTGCTAAGCTTTGACTC
GTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGCCGGCTGAGGTGGCTCAACTACCTCCGGCCGGACATCAAGCAC
GGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTCCCTCTACAACTCCATCGGAAGCAGGTAAACTGATTTGGCTGA
GCGCATATGCACTGAATCGCATGCGGATTCCGAAGCGCCCCGTCGGATTTGTTTGTAGCTGCCATTCCTGCAGTG-TGTC
ACGTAATTGACTGATCGT----CTCTGGTGTGTGTGCCCGACCTGCAGGTGGTCTATCATCGCATCCAAGCTTCCCGGCA
GGACGGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGGCCATGGCCATGCA---CCACCAGCAGCAG
CACTACCACCACCACGGCACCGCCGGCCGGGGACATGCCCGCGCTGCGACGATCGCCACGCCACCGCCCGCTCCGCAGAG
CCAATGCGCATCATACATGCAGCCCTCGCCCGCGTCCGCCTCGTCCGCCGTCACCACCGCGAGCGGCGACGCGGCCAGCT
TCGGCGCCATGTACTCCCCGTCTCACCAGGCTGCGCCACTCGGTCACTACAACGTCAACGCGGCGGCGCCGCTTGCCGAA
TTCTCGGCCATGCCGACGCCGGCCGCGGCCAACAGTTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCT
CGTCGGGGGCGGGGACTTCTCCCAGGCGGACCTGTTCGGCGGGTTCGGGGCGTCGCTGCTGCAAGCGCAAGACAGCAGGG
CGCAATCGTCCCTGCAGGAGCTCTCCGCGTGCTACTTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGCCGCCGACCAC
GTCAACGTCAAGTCGCCGGGCGCCGGCCTGTGCCCCAGCCTGACATGAGAAACAAAACCAAGA----CACTAATGTCGCC
GCATCCATGCGCAAGATGTCCATGCC----TAGTCGTCGATGGCTGTAGTTGCTGGCTGCCTGGCTGGCGCCGCCTTGCC
CCTGTTAATTTTCTGTGTCCATGAGATGGATTATTACATGTACATTATCTTATCCGCCACTCCACTGCTATGTCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAGATGA
TGAGCTAGATTTGGATTCCCTCCCAATTTGCTTGCTTGCCACTGTTGGGTTCTGCCTACCAAGTACCAACCATGCAGTCC
GGCTACTGTGCAAGCTTGAGTTAGTGCGATCGATGTGACCTGGACATGGCTCTGTCAAATCCAAATCCCCCTTGGAGATT
GATTTGGTAAAGTCGCCCTAGTTCTCGCGCCCAAGTCCGCCTCTAGCCCGAGTAGCCAATCACTCGTCGACGTAAAGATC
TTGTAGTGAGAGAGACTGTACTATAT----------------------CACACACA---CTGAGAATAAATACTAGTACG
ACATCCTATGTAATGTACGTACGTATG---------TGTTTGATCAATTCGTGTGGCTACTATTGCTTGGTCCGATCGTG
CTAG-AAGCTAGGCAGGGGG-CCGGCAACGAGAAGCGCATGATGTACCGCGCAGGTTCTTGGTGTGACGCGCTGGATGAC
GGCGACGAACTGAAGCCGGGCCGGG------CGGTGCCGTGTGTACGTGTGCGCGATGGATGGACCAGGTCGGTCGATCG
ATCATGGGGCTCGCATATGCTTTGCATGGGCAGCAGGCAGTGTCATGCACGGACCCGGCCGTTAA-CCGATCATGGAGCG
AGCGCGAGGCG----AAGAAAGATGCACCCAGCTAGCTTATTAGC-----------------------------------
-------------------------------------------TAGCAGGCGTGTGGATGCAAGCGACTCATTCCCAGTC
CCAACCGGACGGATGATTAGATTAGATTCTCCTTCTCCATGTAGCAAGCCAATCAGCACGCCACGCATTTGATTATGCTC
GACCCCCCGCAAAAAAGAAAAAGAAAAACAC--ATTTGATTGCTCGATCTTATTACTCTATCTAGGACTCCATGTATGTC
CATCGGCCTGGTCCGCTGAAGCACATGGGCAATGGATTAAGGCGCTGCCAAGATTT-------------------TTAAC
TAGCATGTGGAGTAGCACGCATAGTGGGCACGTTTAGTTAGGCGGGTGCCGTCCCGTTTTTC-
>SNPs
---------------------------------------S------------S----------------S----------
----------------------S---S----------S--------SSSSSS-------------------SS-SS--S-
--S--------S---------S-------------SS--------S---------SS-S---------SS-SS-SSSSSS
SS---S-SS-SS--SSSSSSSSSSSSSSSSSSSSSSS----S---------S--S-S-----------------------
S--------------------------------------------------S-----------------S-------SSS
S-SSS------S----------------------S-S----------------------S--------------------
----S----------S-S-S------------------------------------S----------SS------S----
----------------SS---------------------SSSSSSSSS--------------------------------
-------------S--------------------------------S---------------------------------
---------------------------------------------------------S--SS--SSSSSSSSSS------
---------S-----------------------S-----------------------S----------------------
---------------S----------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------SSSS--------SS----SSSS----SSS-------
---S-----------SS------------------------S----S----S-SS----S--------------------
----------------------------------------------------S---------------------------
------------------S-------------------------------------------------------------
-S--------------------------------------------S-------------------------S-----S-
S------------------------------------------------------------------S------------
-----------S----------------------------------------------------------SSS--SSS--
----------------------------------------------------------S---------------------
-------------------------------------------------------------------S------------
-------------------------------S------------------------------------------------
------------------S-------------S------S----------------------------------------
--------------------------------------------------------------------------------
--------------S------------------------S----------------------------------------
--------------------------------------------------------------------------S-----
-------------------S---------------------------------------S-S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------------------------SSSS-------------
--------------------------SSSS---------S--S----------S--------------------------
---S--S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-SSS----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------SSSSSS
SS-SSSS-SSSSS---SS-SS-SSSSSSSSSSSSSS-----------------SS-------------------------
--------------------S--------------------------------S-----S-------------------S
----------S--------------------------------------S------------------------------
S------------------------------S----S----------------------------S--S-----------
---------------------S----------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------------------------
--------------------------------------------------------------------------------
----------------SS-S---SSSS-SSSSS--------S------------S--S----------------------
----------------------------------------------SSSSSSS---SSSSSSSSSSSSSSSSSSS-----
-----------------S-------------------------------------S-------
>forward_485
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACGCGTCTTCCATCT
GATCC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2546
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CGCACTAATGTCACC
GCATC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>forward_1112
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGGTCCGATCCGATCATCCA--------
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>reverse_3043
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--TCACTGTGCGAGCTTGAGTT----------------------------------------------------------
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