>input_sequence_46543
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------------ATGGCGGCGGTTGCGGCGAGGGCGGGCGCGGCGGCCCGGCGGCTGTGCCACG---CGGCGGCGGCGCA
GCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCGGTGAGTCGCTTGCCCC------CTTCTCCTCTCCCTG
CGGCGACGTTTTCCTCCTCCTCAGATCCCCTCCGATTTACCTGAATC--------CTGTGCTACTGTGGGCTGGTGATAA
CTGCTCTGATTGCTGCGGTCTAGCCGTC-TAGCCGTTCGGTGCTTCCAGATTCAGCTGAAATGTAAAAGTTCACGCTTCC
ACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------ACTTGTGAGCGCTGAAA
CTGACGTGAAATCCTGGCGTGCGGTCCATGGCGAGCTTCCTCCTAATCTGGGTAGGGGAAAGCGACATTTGCCTCGC---
----------ATTCTCCTTGCCGAGAGCTCAGGAATCTGGCATCCATTGGTTAATCCATTCCTGACCAGTCGTACCTTAT
TTTCGGTACAGTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCATTGGCTGGCTATTGCT
GGTAT---------------------------------CTTGACGGATCAATCATTAACAAAGCGTTGTGTGATATTATT
ATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCT-------------------------------------
-----------------------------------------------------------TGATATTCAATCTTA-TTTCT
GTCTGCAACCCCAAAGCATCAGGCATCTGGTATGACTGAAACAAAGTTACACGCGACAATTTGTTACAGAGAAAGACTCG
CTTTGTCTGAATGTGATAACCA--------TTAGCACATAAAGTTGGTTGCAAATATTGCTAGGAAATTATTTCTCCCTG
ATACTAACTTGCTGCAAATGTCCTATCTCATTTCAGTGAGTTGAACTATGTTTCTGGTTGTTCTCAGGTAGAGGTTCAAT
TTGCAGATGGCAGTACATTCCATCTGTCAGCTGAGTTTCTCAGAGTCTACAGCCCAGCAGCTGACAGCAAGATCAGATCA
ATAGCTGGCGAGAAGGTAAATTTTTACTGTATTTTCTGTATTCCTTTTCACCACTTGAAGTGGGGAGACCATTTTTTTTT
TAAAGTTGGTGAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCTGTTTGCTAACTCTGGAATGTTGACCTGTCC------
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---TACAAAAACTT-GAACAATACCCCTTTGTAATATTACTAGCATATTTTGGTGGTGTGTATTTAGTTGTTTGCTAAAT
ATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATTATGTCAGCCGAATCAATAGGAAACTA
TGGAGTCCGGTGAGGGTCGTATTCTTTGTAGAATAGATTTCATGGCAGATTTATCTACTTCGGACAATAGTATGCCTCAT
GCAGAAAATAGTTTGTTGTGCCGTCTCTATCTAACAGAAACTATTAATTTGTTTTTGTCTGCAAGTCTCATCTATAGCGA
CTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTACTTGCACCATCTGGGT
TCTAACAAATTCAGTCTGTCACGAAATTATATCAAAACTTTGAGGAAACACGGTCTTAGTCGGGATCCTCAGAGAAGAAA
ATGA----------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G385200
ACAGGCTCAACTTCAAAGAAATCGAATATCTCATCAAAGCTCTTGCAGAACTGTTTCTCCACAACATCTCTGACAACTTC
GATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCTCTTCACCCAGGCCGTCGGCGCCAAATCGGGCTTCCCCA
GAATTTGAGCAGCCTGGTCGAAATAAAAGGTGAAAGAATGTGAGTGTAGGTAGGATGTGGCATCTGTTGGAGTCCGCGAA
GCCTCACAAAGTCACCCTCCGATTCATCAAGGTATAAGACAAGTAAGCAAGACGGCCGATCAGAGGGCAAAACAGAAAGC
AGCGGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGGGAGTACATCTTCTGGGCGCCGATCTCGTG
CTGCTGCTCCCACATGGCCTGCCGCTCCTCCTCATCCTTGACGAACCCCGTTCGCAGCTGGCACACCTG--GACAACGAA
AACCAGCCAACCAAACACC---GTGAGATCACACGCATACCACCGAACACCTG--GCGCGCGCGCGGGCGGAGGAGCCGA
TGGAACAGGAGGAGGA---GCTCCCTCCTCCCCGTGCCGCACGCACCTTGTAGCTGCCGTAGATGTCGACGGCGCGGACC
CAGAACTGCGCGGAGCGTCTCCACGGGCGGAAGCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCAGCGGCAG
CGGCATTGCGGCCGCCGGAGAGGAGGGA---ATGGATGTAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGACGCGCGC
CGCAACATCCGACTCGTGGCTCCAAGTGGCTGGGCGCTGCGCGTGCGTGGGCGGCGGGCGAGCTGGGGCGAAGGCGGAAA
GTGGGAAA-GGCGTGGGCCTTTGCAGGCCACAGAAAAGAGAAAACGCTTCCACCACGTGGTCGG----GAACGGACGGCT
GTGATCGCGTC------------------------------GCTCCTCC-GCCGGCTCTGCTTCTGGGTGAGCTAGTCAG
T---AGTTCTCCATGGCGGCGGTTGCGGCGAGGGCGGGCGCGGCGGCCCGGCGGCTGTGCCACG---CGGCGGCGGCGCA
GCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCGGTGAGTCGCTTGCCCC------CTTCTCCTCTCCCTG
CGGCGACGTTTTCCTCCTCCTCAGATCCCCTCCGATTTACCTGAATC--------CTGTGCTACTGTGGGCTGGTGATAA
CTGCTCTGATTGCTGCGGTCTAGCCGTC-TAGCCGTTCGGTGCTTCCAGATTCAGCTGAAATGTAAAAGTTCACGCTTCC
ACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------ACTTGTGAGCGCTGAAA
CTGACGTGAAATCCTGGCGTGCGGTCCATGGCGAGCTTCCTCCTAATCTGGGTAGGGGAAAGCGACATTTGCCTCGC---
----------ATTCTCCTTGCCGAGAGCTCAGGAATCTGGCATCCATTGGTTAATCCATTCCTGACCAGTCGTACCTTAT
TTTCGGTACAGTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCATTGGCTGGCTATTGCT
GGTAT---------------------------------CTTGACGGATCAATCATTAACAAAGCGTTGTGTGATATTATT
ATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCT-------------------------------------
-----------------------------------------------------------TGATATTCAATCTTA-TTTCT
GTCTGCAACCCCAAAGCATCAGGCATCTGGTATGACTGAAACAAAGTTACACGCGACAATTTGTTACAGAGAAAGACTCG
CTTTGTCTGAATGTGATAACCA--------TTAGCACATAAAGTTGGTTGCAAATATTGCTAGGAAATTATTTCTCCCTG
ATACTAACTTGCTGCAAATGTCCTATCTCATTTCAGTGAGTTGAACTATGTTTCTGGTTGTTCTCAGGTAGAGGTTCAAT
TTGCAGATGGCAGTACATTCCATCTGTCAGCTGAGTTTCTCAGAGTCTACAGCCCAGCAGCTGACAGCAAGATCAGATCA
ATAGCTGGCGAGAAGGTAAATTTTTACTGTATTTTCTGTATTCCTTTTCACCACTTGAAGTGGGGAGACCATTTTTTTTT
TAAAGTTGGTGAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCTGTTTGCTAACTCTGGAATGTTGACCTGTCC------
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---TACAAAAACTT-GAACAATACCCCTTTGTAATATTACTAGCATATTTTGGTGGTGTGTATTTAGTTGTTTGCTAAAT
ATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATTATGTCAGCCGAATCAATAGGAAACTA
TGGAGTCCGGTGAGGGTCGTATTCTTTGTAGAATAGATTTCATGGCAGATTTATCTACTTCGGACAATAGTATGCCTCAT
GCAGAAAATAGTTTGTTGTGCCGTCTCTATCTAACAGAAACTATTAATTTGTTTTTGTCTGCAAGTCTCATCTATAGCGA
CTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTACTTGCACCATCTGGGT
TCTAACAAATTCAGTCTGTCACGAAATTATATCAAAACTTTGAGGAAACACGGTCTTAGTCGGGATCCTCAGAGAAGAAA
ATGATGGTAAGTATTTGTGTGTCTTAAGCATGTAGGTACGACGGAACTCAAATAGGGTTTGCCTGCCATGTG--------
------------------------GATGGATGGAGCTTCTACATGTGCACACAAAATCTCTTAATTCAGATAACTTATTA
CATAGTGTCAGAAACTGTGTTTCCATTTAGAATATGATAATATTCTTTACACTGAGTTCATACACATGTGCTGGATGGGA
TTGTATGTCTTTCTTGAGTTCTGTCGGTAGAACTA----TTTTCCTGTTCATTATGATTTCTGCATGAAATCTTTTCTAC
TTTATATTTACGGTGGAACAGGAGGTGAGGGAAAGATCATCATGGCAGCATCCTACATGTACCTCTGATCATGTAAACAA
TGCCACCTTGAAAGTAGCCTCGGGCACTACGCCGGC------CATGGAGTCAATGAGCTTGCCATGGCATATGCCCATGA
ACACCTTGCATCATTCATCCCTGCATGCCATGCACATCTCACTGGTCAGGAGCTCACAGCAAGATGGTCGCCTCATGACT
-AAACCGGTACAGGGGGAACGACCTACGCCCCTTGATCAGATCAAGGATCTTAGTTGTGCCCACCTCCACGGCCATGCAT
GCCGCTTTGATCTCCCATGGCAGCACCGATCCCAGCTCAGCCATCAGCTTGCCGATATTTGACAGCACCAGCTCAGCCAC
GGTGTCGTTGCTCCTTCTTGCAAGAGC--TTGCTTGGGATTGACAAAATTTGCACTTGGTTTACTCCAGTATCTCACTTC
ACAGAGACCAGTAGTAAGGTA--CACCCAAAACGGTTAA-----------------------------------------
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----GATACATGTCACTTGGCTCTGA-------------CAACA------------------------------------
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----------------------------ATCTTGTCTAATCATACAGTGATACAGATGATTGATCAG-------------
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------------------------------------------------------------------------AGCTGGAT
GTTGGCCCCATTTATATGTCCCGAGCATGCAACTTGCTTGGATATCACACGTAGCTCATGCACATTTGGCCAACCAGTCA
TGCAGGAGGCACCGCTGTGGCGAC-----GGACACCAATTCATA-GACACATACTGCGTCCGTG
>chr3A_1
ACAGGCTCAACTTCAAAGAAATCAAATATCTCATCAAAGCTCTTGCAGAACTGTTTCTCTACAACATCTCTGACAACTTC
GATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCTCTTCACCCAGGCCGTCGGCGCCAAATCGGGCTTGCCCA
GAATTTGAGCAGCCTAATCGAGATAAAAGGTGAAAGAATGTGAGTATAGCTAGGCTGTGGCATCTGTTGGAGTTAGCGAA
GCTTCTCAAAATGATCCTCCGATTCATGTAAA---AAAAAAAGTAGGAAAGACGACCGATCAGAGGGGAACACAGAAAGC
AGCAGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGCGAGTACATCTTCTGGGCGCCGATCTCGTG
CTGCTGCTCCCACATGGCCTCCCGCTCCTCCTCATCCTTGACGAACCCCGTGCGCAGCTGGCACACCTGAAGACCGACCA
AACCAGCCAACGAAACACCACGGTGAGCTCACACGCATAGAACCGAACACCTG--GCGCGCGCGCGGGCGGAGGCGCCGA
TGGAACAGGGGAAGGCCCGTCCTCC-----------CCGCACGTACCTTGTAGCTGCCGTAGATGTCGACGGCGCGGACC
CAGAACTGCGCGGAGCGGCTCCACGGCCGGAACCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCAGCGGCGG
CGGCATTGCGGTCGCCGGAGAGGGGA-ATGGATGGATACAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGACGCGCGC
CGCAACATCCGACTCGTGGCTCCAAGCGGCTGGGCGCTGCGCGTGCGTGGGCGGCG----AGCTGGGGCGAAGGCGGAAA
GTGGGAAA-GGCGTGGGCCTTTGCCGGCCACAGAAAAGAGAAAACGCTTCCACCACGTGGTCGG----GGACGGACGGCT
GTGATCGCGTC------------------------------GCTCCTCTTGCCGGCTCTGCTTCTGTGTGAGCTAGTCAG
T---AGTTCTCCATGGCG------GCGGCGAGGGCGGGCGCGGCTGCCCGGCGGCTGTGCCACGCGGCGGCGGCGGCGCA
GCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCCGTGAGTCGCTTGCCCCTTCCCCCTTCTTCCCTCCCTG
CAGCGACGTTTTCCTCCTCCTCAGACCCCCTCAGATTTACCTGATTCCTGCTCTTCTGTGCTACCGTGGGTTGGTGGTAA
CTGCTCTGATTGGTC--GTCTAGCCGTCTTAGCCGTTCAGTGCTTCCAGTTTCAGCTGAAATGTAAAAGTTGACGCTTCC
ACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------ACTTGTGAGCGCTGAAA
CTGACGTGAAATCCTGCCGTGCGGTCCATGGCGAGCTCCCTCCCAATCT-GGTAGGGGAAAGCGACATTTGCCTCGC---
----------ATTCTCCTTGCTGAGAGCTCTGGAATCTGGCATCTGATTGGTTATCCATTCCTCACCAGTCGTACTGTAT
TTTCGGCAC-GTATGCATTTCAATGACCTTATCCAGAATTCACAAATTCATTCAGTTATCTCCATTGGCTGGCTATTGCT
GGTAT---------------------------------CTTGACGGATCAATCGTTAACAAAGCGCTGTGTGATATTATT
ATCTGGCGATGAATTTGGAATGTAACCTAGCACCAGAGGATCTTGATGTTCAATCTTATTTCTGTCTGCGACCCTAAAGC
ATCAGGCATCTGCTATGACTGAAGCAAACTTACACACGACAACTTGCTACAGAGAATCTTGATATTCAATCTTA-TTTCT
GTCTACAACCCTAAAGCATCAGGCATCTGGTATGACTGAAACAAACTTACACACAACAATTTGTTACAGAGAAAGACTCG
CTTTGTCTGAATGTGATAACCATTAGCAGTTTAGCACATAAAGTTGGTTGCAAAAATTGCTAGGAAATTATTCCTCCCTG
ATACTAACTTGCTGCAAATGTCCTATCTCATATCAGTGATTTGAACTATGTTTCTGGTTGTTCTCAGGTAGAGGTTCAAT
TTGCAGATGGCAGTACATTCCATCTGTCGGCTGAGTTTCTCAGAGTCTACAGTCCAGCAGCTGACAGCAAGATCAGATCA
ATAGCTGGCGAGAAGGTAAACTTTTACTGTATCTTCTGTATTCCTTTTCACCACTTGAAGTGGGGAAACCATTT---TTT
CTCAGTTGGTAAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCCGTTTGCTAACCCTGGAATGTTGACCTGTCC------
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---TACAAAACCTTGGAACAATACCCCTTTATAATATTACTAGCATATTTTGGTGGTGTGTATTTAGTTGTTTGCTAAGT
ATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATAATGTCAGCTGAATCAATAGGAAACTA
TGGAGTCCGGTGAGGGTCATATTCTTTGTAGAATAGATTTCATGG-AGATTTATCTACTTCGGACAATAGTATGCCTCCT
GCAGAAAATAGTTGGTTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGCTTTTGTCTGCAAGTCTCATCTATAGCGA
CTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGATTACTTGCACCATCTGGGT
TCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGATCCTCAGAGAAGGAA
ATGATGATAAGTGTTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTACCATGTCCTGGAATT
CAGAAAAACTGTTGCCTTGAGGGAGATGGATGGAGCTTCTGCATGTGTAC--GGAATCTCTT-ATTTAGATAACTTGGTA
CATAGTGACTGAAACTGTGTTTACGTTGAAAATATGGTAAAATTCTTTACACCGAGTTTATAT--ATGTGCTGGATGGGA
TTGTATGTCTTTCTTGAGTTGTGCT---GGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCATGAAATCGTTTGTAC
TCTATATTTGAGATCGAACAGGAGGTGAGGGAAAGATCATCATGGCAGCATGCTACATGTACCCCTGCTCGTGTAAACAA
TACTACCCTCCATGAAAGTAGTAGCCCGGTAAACAACTTCGGCATGGAGTCAATGGGCTTGCCATGGCAGATGCCTATGA
ATACCTTGCCGCATTTATTGTCGCGTGCCATGGGCATCTCACCGGTTAGGAGCTTGCAGCAAAATGGGCTCCTCATGAAC
-GAACCGATACAGGGAGAACGACCTACTACCCACGATTAGATCATGGATCTTAGTTTTGCCTTCCTCCATGGCCATGCAT
GCCACTTCAATCTCCGATGGCAACACCGATCCTAGCTCCTCCATCAGCTTGCTGATCTTTGACAGCACCAGCTCAACCAC
GGTGTCCCTACTCCTTCTCGCGAGAGC--ATGCTCGGGATCGACAAAATTTGCACTTGGTTTACTCCAGTATCTCACTTC
ACAAGGACCAGTAGTAAGGTAGACACCCAAAAAGGTTAA-----------------------------------------
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----GATACATCTTGCTTGCTTCGAAAAAAGCCTCCCGGCAACA------------------------------------
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----------------------------CTCTTGTCTAACCATACAGTGATACAGATGACTGA-----------------
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>chr3B_1
ACAGGCTCAACCTCAAAGAAATCGAATATCTCATCAAAGTTCTTGCAGAACTGTTTCTCCACAACATCCCTGACAACTTC
GATCGGCGTGGACGGAGCCTTGTCGCACAATGTAACAAGCCGCTTCACCCAGGCCGTCGGCGCCAAATCGGGCTTCCCCA
GAATTTGAGCAGCCTGGTCGAAATAAAAGGTGAAAGAATGTGAGTACAGCTAGGCTGTGGCATCTGTTGGATTCAGCGAA
GCCTCACAAAGTCACCCTCCGATTCATCAAGGTATAAGACAAGTAAGCAAGACGGCCGATCAGAGGGCAAAACAGAAAGC
AGCAGGCAGGGAGGGACCTTGAGGAAGAGGCCGCCGAGCTCGGAGCAGAGGGAGTACATCTTCTGGGCGCCGATCTCATG
CTGCTGCTCCCACATGGCCTCCCGCTCCTCCTCATCCTTGACGAACCCCGTGCGCAGCTGGCACACCTG--GACCGACAA
CACCAACCAACGAAACACC---GTGAGCTCACACGCATACCACCGAACACCTGGCGCGCGCGCGCGGGCGGAGGCGCCGA
TGGAACAACAGGAGGAGGGGCTCCCTCCTCCCCGTGCCGCACGCACCTTGTAGCTGCCGTAGATGTCGACGGCGCGGACC
CAGAACTGCGCGGAGCGGCTCCACGGGCGGAAGCGGTCGGAGAGGCGGTCCCGCAGCTCCTGCACCTGCGCCAGCGGCAG
CGGCATTGCGGCCGCCGGAGGTGGGGGATGGAGGAATGTAGTCTAGAATCTAGATGCCCCCCTGCCTTAATGACGCGCGC
CGCAGCATCCGACTCGTGGCTCCAA-------------------------GCGGCG----AGCTGGGGCGAAAGCGGAAA
GTGGGAAAAGGCGTGGGCCTTTGCAGGCCACAGAAAACGCTC----------CCACGTGGTCGGGGACGGACGGACGGCT
GTGATCGCGTCTGGGGGCGGCGGGACGGGTGGTCGTCTCTCGCTCCTCC-GCCGGCTCTGCGTCTGTGTGAGCGTCAGAC
CGTCAGTTCTCCATGGCG------GCGGCGAGGGCG---------GCCCGGCGGCTGTGCCACGCGGCGGCGGCGGCGCA
GCCCCCGCGCCTGAAGAAGCTCGCGCTGCACCCGCCCAAATCGGTGAGTCGCTTG--CCTCCCCCCTTCTCCTCCCCCTG
CAGCGACGTTTTCCTCCTCCTCAGATCCCCTCCGATTTACCTGATTCCTGCTCCTCTCTGCTACTGTGGGCTGGTGGTAA
CTGCTCTGATTGGTGCGGTCTAGCCGTC-TAGCCGTTGGGTGCTTCCAGTTTCAGCTGAATTGCCA-GGTTCACGCCTTC
ACGGCAGCGCAGGAAAAAAGACATTCCGTGTGATGGTAATGCGCC------------------ACTTGTGAGCACTGAAA
CTGACGTGAAATCCTGCCGTGCGGTCCATGGCGAGCCCCCTCCCAATCT-GGTAGGGGAAAGCGACATTTGCCTCGCCAT
CTCTCGTAGTATTCTCCTTGCTGAGAGCTCTGGAATCTGGCATCTGATTGGTTATCCATTCCTGACCAGACGTACCGTAT
TTTCAGTACCATATGCATCTCAATGAGCTTATCCAGAATTCAGCAATTCATCCAGTTATCTCCATTGGCTGGATATTGCT
GGTAAACAGTACAGTACCTACTATCTGCTACTCAACTGCTTGGCGGATCAGTA----------CGTTGTGTGATATTATT
ATATGGCGATGAATT-GGAACGTGACCTAGCACTAGAGGATCTTGAT---------------------------------
---------------------------------------------------------------ATACAATCTTA-TTTCT
GTCTGCAACCCTAAAGCACCAGGCGTCTGCTATGACTGAAACAAACTTACACACGACAATTTGTAACAGAGAAAGACTCG
CATTGTCTGAATGTGATAACCATTA--------GCACATAAAGTCGGTTGCAAAAATTGCTAGGAAATTATTTCTCCCTG
ATACTAACTTGCTGCAAGTGTCCTACCTCATATCAGTGAGCTGAACCATGTTTCTGGTTGTTCTCAGGTAGAGGTTCAAT
TTGCAGATGGCAGTACATTCCATCTGTCAGCTGAGTTTCTCAGAGTCTACAGCCCAGCAGCTGACAGCAAGATCAGATCA
ATAGCTGGCGAGAAGGTAAACTTTTACTGTATTTTCTGTATTCCTTTTCACCACTTGAAGTGGGGAAACCAAA--TTTTT
TTAAGTTGGTGAGGGCCTGATGCTTCTATGGCAAGTTTAGAGCTGTTTGCTAACCCTGGAATGTTGACCTGTCC------
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---TACAAAAACTT-GAACAATACACCTTTATAATATTGCTAGCATTGTTTTGTGGTGTGTATTTAGTTGTTTGCTAAGT
ATTTAACCCTTTAAATTATGCCAGGTTATATTTGGGCGCCGACATGTTGGAATAATGTCAGCTGAATCAATAGGAAACTA
TGGAGTCCGGTGAGGGTCCTATTCTTTGTAGAATAGATTTCATGG-AGATTTATCTACTTCGGACAATAGTATGCCTCCT
GCAGAAAATAGTTGGTTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGCTTTTGTCTGCAAGTCTCATCTATAGCGA
CTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACCAGACTGGGATCTTCACTTGGGATTACTTGCACCATCTGGGT
TCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGATCCTCAGAGAAGGAA
ATGATGATAAGTATTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTACCATGTCCTGGAATT
CAGAAAAACTGTTGCCTTGATGGAGATGGATGGAGCTTCTGCATGTGTACATGGAATCTCTT-ATTTAGATAACTTGTTA
CATAGTGACTGAAACTG------CGTTGAAAATATGGTAAAATTCTTTACACCGAGTTTATAT--ATGTGCTGGATGGGA
TTGTATGTCTTTCTTGAGTTGTGCTGGTGGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCATGAAATCGTTTGTAC
TCTATATTTGCGGTCGAACAGCAGGGGAAAGTTGCCCGGTACTCTGCGTGGA----------------------------
-----------------------------------------GCATGGAGTCAATGAGCTTGCCATGGCACATGCGCATGA
ACACCATGGCGCATTCATCACTGCATGCCATGGGCATCTTTCTGGCCAGGAGCTC-CAGCAAAATGGGTTCCTCATGAAA
TGTATCGTTACAGAGGGAACAACCTACTCCTCTTGATCAGATGAAGGATCTTAGTTGCACCCTCGTCCCCAGCCATGCGT
GCCGCTCTTTGACAGCAGTACC---------------CCTCAATCAGCTTGCCGATCTTTGACAGCACCAGCTTAGCGAC
GGTGTCGCTGCTCCTACTGGTGAGAGCATATGCTCGGGCTCGACAAAATAT----TTGGTTTACTCCAGTATCTCACTTC
ACAAGGACCAGTAGT-----------------------------------------------------------------
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>chr3D_1189
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---------------------------------------------------------GTGCTTCTGTTGGTTGGTGGTGA
CTGTTCTGATTATTGTGGTCTAGTCGTC-TAG-CGTTCAGTGCTTCTAGTTTTAGCTGAAATGCCG-AGTTCACGCATTC
ATGGCAGCATAGGAAAAAAGACGTTCCGTGTGATTGTAATGTGAGTATGTGACAAGAAGTGTAACTTGTGGGCACTGAAA
TTGACGTGAAATCCTGCGGCGCGGTCCATGCCGAGCTCCTAATCTG--T-GGTAGGGGAAAGCGATCTCTAGAGCCTGGC
CCTTGC------------------------------------------TGGTTATCCATTCCTGACCAGTCGTACAGTAC
TTTTAGTACCATATCCATTTGAATGAGCTTATCCAGAATTTACAAATTCATTCAGTTATCTCCATTGGCTGGCTATTGCT
AGTAAAT-----AGTACCTACTTTCTGCTACTCGGCTGCTTCACAGATCAAT------------------TGATATAATT
ATCTGGCGATGAATTTGGAATGTAACCTAGCACTAGTGGATCTTGAT---------------------------------
---------------------------------------------------------------GTTGAATCTTACTTTTT
TTCTACAACCTTAGAACAGCAGGCATCTGTCATGACTTAAACATACTTACACACAACAAGTTGTTGCAGAAAAAGACTCA
CATTGTCTGAATGCGATAACCATTA--------GCACATAAAGTTGGCTGTAAAATTACA-AGGAAGTTATTTCTCTAAA
ATTCTAACTTGCTGCAAAAATTCCATCTCATATTGGTGAGTTGAACTATGTTTGTGGTTGTTCTCAGGTAGAGGTTGAAT
TTGCAGACGGCAGTACATTCCATCTCTCAGCCGAGTTTCTTAGAGTCTACAGTCCGGCAGCTGACAATAAGATCAGATCA
ATAGCTGTCAAGAAGGTAAAATTTCAGTGTATTTTGTGCATTCCTTGTCAGCATTTGAAGTTGGAAAGCTG-TG---TTT
TTAAGTTGGTGGGGGCGT-ACGCTGCCATAGCAAGTTTAGAACTATTTGTTAACCCTGGACTATTTACTTGTCCTACAAA
ACGATGGTCTTAAATAGCGAGCTATAGCACGCTATACCGTATAGAAGACGTCCTGAGCTAAGTGACTTTGATTCAAACAA
ATGAACAAACATTTTAAATAGCACACTATATCGTTTAGAAGAGGCCTGCCACTAAGAGGCATAGCGTGCTATTTAAAACT
ATGTAAAAAAACTT-GAACAATACACCTTTAGAATATTTGCA----TATTTTGTGACGAGTATTTATTGCTTGCTTAATA
--TTCACCCTTGAAATTATCCTAGGCTATTTTTGGGTGCCGACATGTTGGAATAATGTCAGCTGAATCAATAGGAAACTA
TGGAGTCTGGTGAGGCTCATATTATTTGTAGAATAGATTTCATGGCAGATTTATCTACTTCGGACAATAGTATGCCTCAT
GCAAAAAATAGTTAGCTGTGCCATCTCTATCTCTCAGAAACTATTAATTTGTTCTTGTCTGCAAGTCTCGTCTATAGCGA
CTCTTTTGGACCACAGGATACTGTTTGATGATTTGCACAAGACTGGGATCTTCACTTGGGACTACTTGCACCATCTGGGT
TCTAACAAATTCAGTCTATCACGAAATTATATCAGAACTTTGAGGAAACATGGTCTTAGTCGGGATCCTCAGAGAAGGAA
ATGATGATAAGTATTTGCGTGTGTTAAACATGTAGATACGACGGAACTCAAATAGGCTTTGCCTACCATGTCCTGGAATT
CAGAAAAACTGTTGCCTTGATGGAGATGGATGGAGCTTCTGCATGTGTACACGGAATCTCTT-ATTTAGATAACTTGTTA
CATAGTGACTGAAACTGTGTTTACGTTGAAAATATGGTAAAATTCTTTACCCGGAGTTTATAT--ATGTGCTGGATGGGA
TTGTATGTCTTTCTTGAGTTGTGC---TGGTAGAATTTGTTTCCTTGTCCATTATGAATTGTGCATGAAATCGTTTGTAC
TCTATATTTG----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTGTCGCGTGCCATGGGCATCTCACCGGTTAGGAGCTTGCAGCAAAATGGGCTCCTCACGAAC
-GAACCGGTACAGGGAGAACGACGTACGACCCACGATTAGATCATGGATCTTAGTTTTGCCTTCCTCCATGGCCATGCAT
GCCACTTCAATCTCCGATGGCAGCACCGATCCTAGCTCCTCCATCAGCTTGCTGATCTTTGACAGCACCAGCTCAGCCTC
GGTGTCCCTACTCCTTCTCGTGAGAGC--ATGCTCGGGGTCGACAAAATTTGCACTTGGTTTACTCCAGTATCTCACTTC
ACAAGGACCAGTAGTAAGGTACACACGCAAAAAGGTTAA-----------------------------------------
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----GATACATCTTGCTTGCTTCGAAGAAGGCCTCCCGGCAACA------------------------------------
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----------------------------CTCTTGTCTAACCATACAGTGATACAGATGACTGAGGGCGCTTATAAAAGTG
TGTA----------------------------------------------------------------------------
-----------------------------------------------------------------------------CTG
AAGGGGTTGGTTTACTTGAGTATCTCACATTAGCACCTCTATTATATATAAAGTTCAAAACTTCAAATACATCTCAATTA
GCTCAGCTGACCAGAGCTGGAAAACTATATAACCTGGACTCGTGGAGACAAAAACTACGTCCCACTCGTATGACATGCTC
GCGACTCATTTGATTATCACACCCCCGGCTCATGTAGATTTGACCGATTGACTCAATGATCATTATCACACCCCATCTCA
TGCAGATTAGTACGGATAAACTGCACACATCACATCATCTTCCTGGAGCATACACCCATTGATCAAATTGGGGATGGGCA
GGTGCCCTTCTCCATCGGCATACATGCCTTTTCCATCTCCCATGGCAGCGCCGAAACTAACTCCACCAACACCTTGCTGA
TCTTGGACAGCATCAACTCAGCAAAGGCGCCGCTGCTCCTTCGAGTGAGAGTGTGTTCGAGGAGAACGATGTGCAGCTTG
TGCATCATGGGGTAGTTGACGCTGAACGGGTCATCATTGTAAGCGAAGGTGGCCACAGGGTCCTAGCACCCAACTTCGAA
ATACAATCGTGGAGAACATGTAGGAACGAGCTTCTTCAAGTAGGTTTATGAATTTGAATATGTTGGCCGGGCACTTGACA
AAGTTTGCACTTGGTTTACTCCAGTATCTCACCTCACAAAGACCAGTAGTAAGGTACACATCCAAGTAGCTTAAGATACA
TCTTACTCGCTTCGAAAAAGGGCTGC----CACTCTTGTCTAATCATACAGTGACACAGATGATTGATCAGGGGTTGGAA
GTTGGCCCCATTTATATGTCCCGAGCATGCAACTTACTTGGATATCACACCTAGCTCATGCACATTTGGACAACCAGTCA
TGCAGGAGGCAACATTGGGACGAGACGATGGGCACCAATTCATACGACACATACTACATCCGTG
>chr3B_3346
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---------------------------------------TTGACAAAATTTGCACTTGGTTTACTCCGGTATCTAACATC
ACAAAGACCAGCGGTATGCTACACACCCAAAAAGCTTAAGATACATCTCACTCGCTTCAAAAAAGGGCCGAGGCAACACT
CTTGTCTAATCATACAGTGATACAGATTATTGATCAGGAGCTGGAAGCTGGCCCCATTTATATGTCCCTAGCATCAACTT
ACTTGGATATCACACCTAGCTCATGCACATTTGGACAACTAGTCATTCAGGAGGCAACATTGGGGGGGGGGGGTGCCATC
TCACGATACATCTTGCTTGCTTCGAAGAAGGCCTCCCGGCAACACTCTCTTAAGGGGCTGGTTTACTCGAGTATCTCACA
TTAGCACCTCTATTATATATAAAGTTCAAAACTTCAAATACGTCTCAATTAGCTCAGCTGACCAGAGCTGGAAAACTATA
TAACCTGGACTCATGGAGATAAAAACTACTCTCTAGTAGGTTTGTGAATTTGGATATGTTGGGTGGGCGCTTGACAAAAT
TTGCACTTGGTTTACTCCGGTATCTAACATCACAAAGACCAGTGGTATGCTACACACCCAAAAAGCTTAAGATACATCTC
ACTCGCTTCAAAAAGGGCCGAGGCAACACTCTTGTCTAATCATACAGTGATACAGATTATTGATCAGGAGCTGGAAGCTG
GCCCCATTTATATGTCCCTAGCATCAACTTACTTGGATATCACACCTAGCTCATGCACATTTGGACAACCAGTCATTCAG
GAGGCAACATTGGGGGGGGGGGTGCCATCTCACGATACATCTTGCTTGCTTCGAAGAAGGCCTCCCGGCAACACTCTCTT
AAGGGGCTGGTTTACTCGAGTATCTCACATTAGCACCTCTATTATATATAAAGTTCAAAACTTCAAATACGTCTCAATTA
GCTCAGCTGACCAGAGCTGGAAAACTATATAACCTGGACTCATGGAGATAAAAACTACTC--------------------
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-----------------------------------TCTAGTAGGTTTGTGAATTTGGATATGTTGGGTGGGCTCTTGACA
AAATTTGCACTTGGTTTACTCCGGTATCTAACATCACAAAGACCAGCGGTATGCTACACACCCAAAAAGCTTAAGATACA
TCTCACTCGCTTCAAAAAGGGCTGAGGCAACACTCTTGTCTAATCATACAGTGATACAGATTATTGATCAGGAGCTGGAA
GCTGGCCCCATTTATATGTCCCTAGCAT-CAACTTACTTGGATATCACACCTAGCTCATGCACATTTGGACAACCAGTCA
TTCAGGAGGCAACATTGGGACGAGACGATGAGCACCAATTCATACGGCACATACTACATCTGTG
>SNPs
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---------------------------------------------S---S----S-------------------S-----
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---S----------------------------------------------------------------------------
--------------------S------------------------------S----------------------SSSS--
-----------S---------------S----------------------------------------------S-----
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-----------------S--------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------S-----------------------------SSSS--------------------
---------------------------------------------------------------------S----------
------------------------------------------------------------------S-------------
------------------SSSSSS--------------------S-----------------------------------
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-S------------------------------------------S-------------------------------S---
------------S------------------------------------S------------------------------
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----------------S--------------------S-----S-----S------------------------------
---------------------S--------S-------------SSS-S-S-S-----------------------S---
---------S----------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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-----------S---------------------------------S------S---------------------------
------------------------------------------------------S-------------------------
-------------------------------S------------------------------------------------
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--------------------S---------------------------------------------S-------S-----
-S----------------------------------------------------S-------------------------
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------------------------------S-----------------------------------------------S-
-----------------------------------------------------S--------S-----------------
------------------S-------------------------------------------------------------
-------------S--------S---------SS----------------------------------------------
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-----------------S----------------S---------------S--------------------------S--
------S----------S----S----S-------S--------------------S-------S------S--------
----------------------------------------S------S----SS--------S---S---------S---
-------S-S------------S-S--S-S------S---S-----------S-----S---SSS---------------
--------------------S--SS---S-S-SS--------S-S---S--------S--S-----------S---S---
-S-------S----S------------------------------------S-----------S---S--S---------
-S-S---S-SS-S-S-SSSSSSS--S-SSSSSSSSS---------------------------------S----------
---------SS--------S------------SS---------------------S------S----S-S--------SS
-S------------------------------------------------------------S-----------------
--------S-----------------------S-----SS----------------S-----------------------
-------S----------S--S-------S----S---------------------------------------------
---S----------------------------S-----------------------------------------------
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-----------S-SS----SS--SS-------------------------------------------------------
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----------------------------S---------------------------------------------------
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-------------------------------------------------------------------------------S
-----------------------------------S--------------S------------------S----------
-----------S-SS--S-S---S-------S-----------------------S-S------
>forward_235
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-------------------------------------------------------TGTGGCATCTGTTGGAGTCC-----
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>reverse_1542
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---------------------CGAGAGCTCAGGAATCTGGC---------------------------------------
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>forward_492
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------------------------------------------------------------------------ACAACGAA
AACCAGCCAACC--------------------------------------------------------------------
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>reverse_2322
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-AAAGTTGGTGAGGGCCTGAT-----------------------------------------------------------
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>forward_1566
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--------------------------GCTCAGGAATCTGGCATCCA----------------------------------
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>reverse_3474
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---------------------------------GGCCATGGAGTCAATGAGCT---------------------------
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----------------------------------------------------------------
