>input_sequence_46466
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-------------------------------------------------------GTT----------------------
----------------------------TAAAGGTGGAAGTGGGCCGGCCCATGTCTCGGCGCTCGCATCCTTTGCCCCT
GTGCGAATCCCCGTCCCACAATTCGCCGCAGCGAGCGGCGAATAGGGTTTTCCCCGTCCCCCTCCTCTCGCTCCCGCTAA
ACCCAACTTCACACTACCAAGGCGCCCACATCTAAAAAAAG-AACTCTGCTACCTGCGCCTAGGGGTTCCGCCCTC-ATG
ACCGTCGCCGAGCCGGAGATGCCGGCGTCGGAGCGCAGGCTCGTGGCCCTCGCCAGGTGGGACGCGCTCATCTTCCTTTA
TTACGGGATCGTGTGGGTCGGCACCGCGGCGTCCCTCGCCAAGGTCATCGCGCGCCGCGCTCTGGGCGAGGTCGAGGTCG
AGGGTTCCGCCGTGCTCGCGGCGGCGTCCTGGCTCTCCCACCACTCCCTTATCTTCGCTGCTCTGTTCACCCCCGTTGCC
TTGATTCTCGTCGGCGCCACCGGAGTGCGCTCCGCGCACAACACCAGGAAGGTAATCGCGGAAAATGTTCCTCTGT-GCC
TTTTTGAACA---GATCCGATTTGCTTCAAACCG----------------GAAAATTTTTATAGCAGTTGAAATAGGATT
TTACAATGTATATGCGGTTTATATAAGTTGCCAATTCCCAATAAGAAATTAAGATCCATCATTTTCATGAATTCGAAACT
GGCATTTGCTTTATTTAAAATGCCTCTGCATCC----GTCTAGCTTAAGTGCATATAGTATGACCTCGTTCTGACCTTTT
TTTATGTCGAATATGCGTAAATTCTTATCAAGGATATCAAAGAGCCCCCGAAATCTCTTCACCAGGTTGTGCAAATGATG
CTCAAGGATCCTGTCATTGTTGGAGCGCTCGTTTTGCTGGTCTTCCTCCCGCTCATAAGTCATGACGATTTGGTGGTTGG
TCTGTTGCCTGTGAAAAGATATCAGAGGGAACATGTTCGTTCAGTATTGAGGGATGTGGGGTCGTTGGGTGTCGGCGCAG
TATTTTGTTTCATCATGTTACCCACTACGGTGCTGAGGCAGTGGAGGA------TGAAGTA---GAGAGTTATGTGGATG
TCCTGTTGAGGTATATACCCTGCCCTCTTCTCTGTTCTCCTATTGGCGTCACATTATATGTTTTTTTTATAAGCCTACTG
TTTCTAGTTTGGTGAATA-TCCTGATAACTTGTGAGCTTTTCATTTGTGCCCCTATCATTTATAAATGTAAATGATTAAC
ACTTATTGGTGTTGATAACTTTATACCAAAACATTTTGTGGTACATCCCAGTTAGACCTACGAGAAAGTTTGGTTTCTTG
GCTTGTTGATAGATGTTAGCTTTCTTAAAAGTATTTGCAGTTAACACTGATCTTGTTTGGTACACGTCGCTG---TTTGA
CCAATCAGATCCATATGGAGAGATCATTAGTGGAAACCTAGCATGCATTCTCCATGTTCAGTCATTCCCATGCTTATTAT
GATCGGGCAGCTTTGACTTTGAATTTTATCCACCGAAACCCACTAAGTGGCAGGCCTCAAATTTCAAAGGGTTGGATCGT
GGGGTATCGCCAATTTAATTGCATTATCTT--------------------------------------------------
----------------------------------GTTATTTATCTGCGTTTGTTTTCTGTTACATATAAACTTATTGCAT
TGCTTTAGTGAAGATA---------------------------------------------CAAATAGAAA---------
--------------------------------------------------------------------------------
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-------------------------------------------------
>chr2D_1_TraesCS2D01G121700
AAAAGCAAATGAGATGGAGGAAGGAATCTAACTCGTGACCGCCAGATTATCCACGAGTGATGCTAGCCACTACAGGCAAC
GGCTACTACTAACTTATTCTCGCATCGCAAAAAGTTTAAGAAGTGAGTATAACGATCT--------ATTCATAGTAGCAC
CTTGTTTGTTGTACCGTATATATTTCTAAATTATTTGAAAATATTACAGGAAACCCATACAATTTTATGAAGAAAGGAAA
TGGGAACAACATTTCAAAATTTTAATACATCTTTCGTAAAACCCCAAAGTTTTTTTGGAAATCCCAAACATTTTGTCGAA
AAAGAACTAAGTTTTAAAAGACGAAAAAATTCTGAAATACGAGCAATTTTTTTGTAAAATGTGAACATT--TTTAAAATT
CCCCGTACACATTTTGAATTTGTTAACAAAATTTTAAAATATGAACAAACTTAGAAAAAAAGAACATTTTTTGACATTAC
CGAATAGTTTTTGAATTTGTGATTTTTTTT---AACTAGAACATTTTTTGGAAATTCTTGAACTTTTTT-GAATTTGTGA
ACAAAATTTAAAAAATGTGCACATTTTTTCATATGTTAAACAATTTTTGAAATTTTAAACTTTTCTGAAATTTTCGAACA
CTTCTTGGAAATAAGCGAACAAATTTTGAAGTTCTAAAGTTTTTTTGAATTGTCATTTTTTATATTTATGATATTTTT-G
AAAAAAGTAAATTTCTTTATATTTGGAACAAATGTTGGAGAATGCATTTTTTAAAATTCTGAACATTTTTGAGAAAAGAA
AAAAGTGAAAAAATTAAAAGAAAAAAGTAAAAATGAAAAGAAAAGAAAAGAAAAAGAGAAGCAGAAAAGAAGCACAAAAA
AGAAAAAGCAAAAAAAAGCGAGAAACAGAAACCAAATGAAAACCAGAAAAACCAGAAAAGAAACAACACACGAAAACCCG
GTTCAGGGAACCTTCTAGAAGGTTTGTAGAAGTTCCCAAAACCGCTGGCCGCTCTGTT----------------------
----------------------------TAAAGGTGGAAGTGGGCCGGCCCATGTCTCGGCGCTCGCATCCTTTGCCCCT
GTGCGAATCCCCGTCCCACAATTCGCCGCAGCGAGCGGCGAATAGGGTTTTCCCCGTCCCCCTCCTCTCGCTCCCGCTAA
ACCCAACTTCACACTACCAAGGCGCCCACATCTAAAAAAAG-AACTCTGCTACCTGCGCCTAGGGGTTCCGCCCTC-ATG
ACCGTCGCCGAGCCGGAGATGCCGGCGTCGGAGCGCAGGCTCGTGGCCCTCGCCAGGTGGGACGCGCTCATCTTCCTTTA
TTACGGGATCGTGTGGGTCGGCACCGCGGCGTCCCTCGCCAAGGTCATCGCGCGCCGCGCTCTGGGCGAGGTCGAGGTCG
AGGGTTCCGCCGTGCTCGCGGCGGCGTCCTGGCTCTCCCACCACTCCCTTATCTTCGCTGCTCTGTTCACCCCCGTTGCC
TTGATTCTCGTCGGCGCCACCGGAGTGCGCTCCGCGCACAACACCAGGAAGGTAATCGCGGAAAATGTTCCTCTGT-GCC
TTTTTGAACA---GATCCGATTTGCTTCAAACCG----------------GAAAATTTTTATAGCAGTTGAAATAGGATT
TTACAATGTATATGCGGTTTATATAAGTTGCCAATTCCCAATAAGAAATTAAGATCCATCATTTTCATGAATTCGAAACT
GGCATTTGCTTTATTTAAAATGCCTCTGCATCC----GTCTAGCTTAAGTGCATATAGTATGACCTCGTTCTGACCTTTT
TTTATGTCGAATATGCGTAAATTCTTATCAAGGATATCAAAGAGCCCCCGAAATCTCTTCACCAGGTTGTGCAAATGATG
CTCAAGGATCCTGTCATTGTTGGAGCGCTCGTTTTGCTGGTCTTCCTCCCGCTCATAAGTCATGACGATTTGGTGGTTGG
TCTGTTGCCTGTGAAAAGATATCAGAGGGAACATGTTCGTTCAGTATTGAGGGATGTGGGGTCGTTGGGTGTCGGCGCAG
TATTTTGTTTCATCATGTTACCCACTACGGTGCTGAGGCAGTGGAGGA------TGAAGTA---GAGAGTTATGTGGATG
TCCTGTTGAGGTATATACCCTGCCCTCTTCTCTGTTCTCCTATTGGCGTCACATTATATGTTTTTTTTATAAGCCTACTG
TTTCTAGTTTGGTGAATA-TCCTGATAACTTGTGAGCTTTTCATTTGTGCCCCTATCATTTATAAATGTAAATGATTAAC
ACTTATTGGTGTTGATAACTTTATACCAAAACATTTTGTGGTACATCCCAGTTAGACCTACGAGAAAGTTTGGTTTCTTG
GCTTGTTGATAGATGTTAGCTTTCTTAAAAGTATTTGCAGTTAACACTGATCTTGTTTGGTACACGTCGCTG---TTTGA
CCAATCAGATCCATATGGAGAGATCATTAGTGGAAACCTAGCATGCATTCTCCATGTTCAGTCATTCCCATGCTTATTAT
GATCGGGCAGCTTTGACTTTGAATTTTATCCACCGAAACCCACTAAGTGGCAGGCCTCAAATTTCAAAGGGTTGGATCGT
GGGGTATCGCCAATTTAATTGCATTATCTT--------------------------------------------------
----------------------------------GTTATTTATCTGCGTTTGTTTTCTGTTACATATAAACTTATTGCAT
TGCTTTAGTGAAGATA---------------------------------------------CAAATAGAAATTAAATTGG
ACTACTCAAGTAATCCATGATGGTAA--------TATTATAGAACTCACCCTTCATTTATTCCGCAGCTAATATATACTT
GCATGTGGTGTTGTTCCATGACATTTTTGTCGAAGTGCATTCGAAAACACATGTCAATGTTGTAGTAAGATTTTCTTCTC
TTTCATGGGTTATCAGTGCCCCTTTAT---CCCAAAGTAACTTGAGCCCCTTTATTTCCCCAAAAGCAACTTGTATCGCA
AGAGCAATTTGTAACAAATATTTTTGATAGTTTATA--TGATCATTTGTTAATTATAGTGGTGCTTCTTGTGCAATAAAA
CTGAAAAATACCACTGTTGGGGAGTCAATTCAATAAGACTAG--CGCTGAAATGCCACTTCATCGAAAAAACCCTATTCC
TCTGTTTATACCATTCTTTTGTGCCCTGTGGAGTGTGGATTGCCATGCTTTGTTCTGTCCATCAGTCTTCACAGTGTAAT
GCATGTAAATATAAAGGGTTCATGATCTCAAGATAGTTTCCATATACCGAAAAAGGCTTTGGCCCCGCTTTTTATAGATA
AAGCATTGACCATCATGCAACCCGATTCAAACACATGGCACCATAAGTCCATAACACACTCACACACCCAAGGCCGGATA
CACAGGCACTGAAATCAGCAGCAGCAACACCACCCCGTACAACTCCTAGCAAACATCAGGTGGATAATAAGCATCACTAT
GGAGTTACTAGGGCCCTCAACTGTGAACGACAATGAGATGAAGCCGCACACGATGAACCGTGAGCTTCAAGGCGACACCT
ACAGGAAGGTCATGATACCGGAGCACCGCCACCGCCCGATCCAAGGATCAGGGTATCCCTCGGATCCAGACAACGATTGA
CCG---CAACGACGCCTTCAAGAAGAGTACGGCGCTGAAACGTTGCCACCGCCGGCCTGACCGAAGTCAGAACGGGCTTT
CACCACAGCCAGCACTCACCACCACTGAAATGTGGTACGATCTGCCACA
>chr2A_1
AAAAGGAAATGAGATGGAGGAAGGAATTGAACTCGTGACCGCCAGATTGTCCATGAATGCTACTAGCCACTACAACCATC
AGCTACTACTGACTTCTTTTTGCATCTCAAAAAATTTAAGAAGTGAGTATAACTCGTGACCGCCAGATTCATAGTAGCAC
CTTGTTTGTTGTACCGGATAGATTTCTAAATTATTTAAAAATATTAT-GGAAACACATACAGTTTTATGAAGAAAGGAAA
TGGGAACAAAATTTCAAAATTCTAATACATCTTTCATAAAACCCCAAAGAC--TTTGGAAATCCCGAACATTTTC-CGAA
AAAGAGCTAAGTTTTAAAGGACGGAAATTTTCTGAAATACGAGC-ATTTTTTTGTAAAATGCGAACATTCTTTTAAAATT
CCCGGTACACATTTTGAATTTGTTAACAAAATTTTAAAACATGAACAAACTTAGAAAACAAGAAGAATTTCTGAAATTAC
CGAATAGTTTTTGAATTTGTGATTTTATTTTCAAACTAGAACATTTTTTGGAAATTCCTGAACATTTTTTGAATTTGTGA
GCAAAATTTTAAAATTGTGCACATTTTCTCATATGTTAAACAATTTTCAAAATTTTAAACTTTTCTGAAACTTACGAACA
CATTTTTGAAATAAGCAAACGATTTTTGAAGTTCTATTTTTTTTATTTTGAA-CATTTTTTATTTTTACGATTTTTTTTG
AAAAAAGTACATTTCTTTATATTTGGAAAAAGTGTTGGAAAATGCA-TTTTTGAATTTCTGAACATTTTTGGGAAGAGAA
AAAAGTGAAAAAGTTAAAAGAAAAACATTAAAAATT---GAAAAGAAAAGAAAAGGAGAAACAGAAAAAGGAGCAGAA--
--AAAAAACCAAAAAATAAGAGAAACAAAAACCAAATGAAA---------ACCAGAAAAGAAACAACACACGAAAACCCG
GTTCAGGGAATGTTCTGGAAG----------GTACCCAAAACCGTGGCGAATAGGTTTTCCGTAATTCGCCGTCCCACAA
TTCGCGGCTGCAAAAATATTATTGGAAATAAAGGTAGAAGTGGGCCGGCCCTGTGAGAATC-------------------
--------CCCCGTCCCACAATTCGCCGCAGCGAGCGGCGAATAGGTTTTCCGCCGTCCCCCTCCTCTCGCTCCCGCTAA
ACCCAACTTTACACTACCCAGGCTCCCGCATCTAAGAAAAGAAACTCTGCCACCTGCGCCTA-GGGTTCCGCCCCC-ATG
ACCGTCGCCGAGCCGGAGATGCCGGCGTCGGAGCGCAGGCTCGTGGCCCTCGCCAGGTGGGACGCGCTCATCTTCCTGTA
CTACGGGATCGTGTGGGTCGGCACCGCGGCGTCCAACGCCAAGGTCATCGCGCGCGGCGCTCTGGGCGAGGTCGAG----
--GGTTCCGCCGTGCTCGCGGCGGCGTCCTGGCTCTCCCACCACTCCCTTATCTTCGCTGCCGTGTTCACCCCCGTTGCC
TTGATTCTCGTCGGCGCCACCGGAGTGCGCTCCGCGTACAACACCAGGAAGGTAATCGCGGAAAATGTTCCTCTGTTGCC
TTTTTCAATA---GATCCGATTTGCTTCAAACCG----------------GACAGATTTTACAGCAGTTGAAATAGGATT
TTGCAATGTAT--GCGGTTTAAATAAGTTGCCAATTCCCAGTTGGAAATTAAGATCCATCATTTTCATGAATTCAAAACT
GGCATTTACTTTA-TTTAAATGTCTCTGCATCC----GTCTAGCTTAAGTGCATATAATAGGACCTCGTTCTGACC-TTT
TTTATGTC-----------AATTCTTATCAAGGATATCAAAGAGCCCCCGAAAACTCTTCACCAGGTTGCGCAGATGATG
CTCAAGGATCCTGTCATTGTTGGAGCGCTTGTTTTGCTGGTCTTCCTCCCGCTCATAAGTCATGAAGATTTGGTGGTCGG
TCTGTTGCCTGTGAAAGAATCTCAGAGGGAACATGTTCGTTCAGTATTGAGGGATGTAGGGTCATTGGGTGTCAGCGCAG
TATTTTGTTTCATCATGTTGCCCACTACGGTGCTGAGGCAGTGGAGGA------TGAAGTAATAGAGGGTTATGTTGATG
TGCTGTTGAGGTATATACC-TGCCCTCTTCTCTGTTCTCCTATTGGCGTCACATTATATG-TTTTTTGATAAGCCTACTG
TTTCTAGTTTGGTGAATAATCCTGATAACTTGTGAGTTTTTCATTTGTGCTCCTATCATTTATAAATGTAAATGATTAAC
TCTTATTGGTGTTGATAACTTTATACCAAAACATTTTGTGGTACATCCCAGTTAGACATACAAGAAAGTTTGGTTTCTTG
GCTTGTTGATAGATGTTAGCTTTCTTAAAAGTATTTGCAGTTAACACTGATCTTGTTTGGTACACGTCGCTG---TTTGA
CCAATCAAATCCATATGGAGAGATCATTAGTGGAAACCTAGTATGCATTCTCCATGTTCAGTCATTCCCATGCTTATTAC
GATCGGGCAGCTTTGAA---------------------------------------------------------------
----------------------------TT--------------------------------------------------
----------------------------------GTTATTTATCTGCCTTTATTTTCTGTTACATATAAACTTATTGCAT
TGCTTTAGTGAAGATA---------------------------------------------CAAATAGAAATTCAATTGG
ACTACTCAAGTAATCCATGATGTTAA--------TATTACAGAACACACCCTTCATTTAATCCACAGCTAATATATACTT
GCATGTCGTGTTGTTCCATGACATTTTTGTCGAAGTGCATTCGAAAACACATGTCAATGTTGTAGTAAGATTTTCTTCTC
TTTCATGGGTTATCAGTGCCTCTTTATTTCCCCAAAGTAACTTGAGCCCCTTTGTTTCCCCAAAAGCAACTTGTATCGCA
AGAGCAATTTGCAACAAATATTTTTGATAGTTTATA--TGATTATTTGTTAATTATAGTGGTGCTTCTTGTGCAATAAAA
CTGAAAAATACCACTGTTGGGGAGTCAATTCAATAAAGACT-AACGCTGAAATGCCACTTCATCGAAAAAACCCTATTCC
TTTGTTTATACCATTCTTTTGTGCCCTGTGGAGCGTGGATTGC-------TGTTCTGTCCACCAGTCTTCACAGTGTAAT
GCATGTGAATATATAGGGTTCATGATCTCAAGATGGTTTCCATATACAGAAAAAGGCTTTGGCCGT--------------
----ATCAACCATCATGCAACCTGATTCAAACACACGGCACCATAA--------CACACACACCCACCCAAGGCCGGATA
CACAGGCACTGAAAT------CAGCAACACCACCCCATACAACTCCAAGCAAACATCAGGTGGACAATAAGCATTACTAT
GGAGTTACTAGGGCCCACCAACGGTGAA----------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>chr2A_1183
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------------------------------------------------GCCACCTGCGCCTA-GGGTTCCGCCCCCCATG
ACCGTCGCCGAGCCGGAGATGCCGGCGTCGGAGCGCAGGCCCGCGCCCCTCGCCGGGTGGGACGGGCTCATCTTCCTGCA
TTGCGGGGTTTACGGGGTCCTCTGCGCGGTGTGCCTCGCGTCGGCCATCGCGCGCCTTGCCCTGGGTCAGGCCGAGA---
----TTCCCCCGTGGTCCTGGCGGCGTCCTGGATGTCCGTTATCTTCATTCTGACC---------TTCACCCCCTTTCCC
GCGTTCGTCGCCGGCGTGCGCCCCGACGCCAAGGTA--------------------CGCGGAAAAGCTCCCCTTGC-GCC
TTCGAATATGTCTGATCCGATTTGCTTCAAAAATAAATAAATAAATAACCGACCGATTTTATAGCAGCTGAAATGGGGTT
TTACATGTGCGCGGT--TTAAATTAAGTTGCCAATTCCAAATTAGAAATTGAGATCCGTTGTTTTCCTGAATTCAGAAGC
GGCTTCC-CTGTA-TGTAAATGCCTCTGCGCCGGGCTGTCTAGCTTCAGAGCATATAATATGATCTCGTACTGAATTTTC
TTTTTTGTC-------------------------------------------------------------------GATG
CTCAAGGACCCTGTCAGGATTGGATGCCTCGTTTCGATGGCCTTCATGGTGCTCGGAACTAAATACGATTTGGTGTTGGA
TCTGTTGCGTGTGGAAGGATGTCAGAGGGAACGGATTGGTTCAATGGCGAGGGGTGTTGGGATAATGGGTGCTGGTGCAA
CATGCTGCTTCGTCATCATACCCACTATGCTACTGAGGCAATGGAGGATCAAGATGAAGTA---GAGGGCTATGTGGTTG
TGTTGCTCAGGTATATACC-CGCCTTCTTCTCTGTCCACCTATTGGTGCCACGTTATATG-TTTTT--ATGAGCATGCTG
TTTCTAGTTTCATG---AATCCTGATAACTCGTGAGTTTTTATTCGCGTCGTG-ACCATTTGTACATGTAACCGAGTGAT
ACTT-TTGATGTTGATAACTTTATTCCAAACAATTTTGTCGTACATCCCAGTTAGACCCACAAGAAACTTTGGTTACTCG
GCTTGTTGATAGATGTTAGCTTTCCTAAAAGTATTTGCATTTAACAATGAGATTCTTTGGTAAAAGAAGTTGCCATTTGA
CCAATCAGATCCATACGGAGAGATCATCAGTGGAAACCTAGCATGCATTGTCCATGTTCAGTCATTGCCATGATTATTAT
GACCGGGAAGCTTGAA--------TTTATCATTCAAAACCCACCACAACACACCG-------------------------
-----------------------------------------------TAAGTGGTAGTCCTCAAATTTCAAAGGGCAGGG
CTGTGGGGTATCTCTTATTTAATTGCATTATCTTGTTATTTATCATT-----TTATCTGTTACATATAAATTTATTGTCT
TGTTTTATCTCCATGTTTATCTGTTTCATTTTAACTTATTGTCTTATTTTAGTCAAGATAGCAAATAGAAATTTAATTGG
CTTGTTCCAGTAAACTATGATGGTATTATTAATTTATTATAGAACATA-CCTTCATTTAATTCACAGCTAATATATACTT
GCATGTGGTGTTGTGCCATGGCATTTTTATTGAAGTGCATTC----ACACATGTTGATGTTGTAGTAAGATTTTTGTCCC
TTCCTTTGTACTC-------------------------------------------------AAAGTAACTTGTTTCGCA
AGTGCAATCTGTAGCAATT-TTTTTGATAGTTTATAAATGATTATTTGTGAATTATATTGGTGCTTCTTGTGCAATAAAA
CTGAAGAATACCACTCTCAGGGAGTCGATTCCATCATGACAAATGCCATTAGTTCCA-----------------------
-CTGTTCATACAATTCTTTTGTGCCCTGTGGAGTGTGGATTGTCATGCTTTGTTCTTTCCACCGGTATTCATAGTCTAAT
GCATGCGAATGGAT-GGGTTAGTGATCTGAAGATGGTCTCCATATA----------------------------------
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>chr2B_1186
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---------------------------------------------------ACCTGCGCCTA-GGGTTCCGCCCCC-ATG
ACCGTCGCCGAGCCGGAGATGCCGGCGTCAGAGCGCAGGCTCGTGGCCCTCGCCAGGTGGGACGCGCTCATCTTCCTGTA
TTACGGGATCGTTTGGGTCGGCATCGCGGCGTCCCTCGCCAAGGTCATCGCGCACCGCGCTCTGGGCGAGGTCGAG----
--GGTTCCGCCGTTCTCGCGGCGGCGTCCTGGCTCTCCCACCACTCCCTTATCTTCGCTGCTCTGTTCACCCCCGTTGCC
TTGATTCTCGTCGGCGCGACCGGAGTGCGCTCCGCGCACAACACCAGGAAGGTAATCGCAGAAAATGCTCCTCTGT-GCC
TTTTTCAACA---GATCCGATTTGCTTCAAACCG----------------GACAGATTTTACAGCAGTTGAAATAGGATT
TTACAATGTAT--GCGGTTTAAATAAGTTGCCAATTCCCAATTAGAAATTAAGATCCATCATTTTCATGAATTCAAAACT
GGCATTTGCTTTA-TGTAAATGTCTCTGCATCC----GTCTAGCTTAAGTGCATATAATATGACCTCGTCCTGACC-TTT
TTTATGTCGAATATGCGTAAATTCTTATGAAGGATATCAAAGAGCCCCCGAAAACTCTTCGCCAGGTTGCGCAGATGATG
CTCAAGGATCCTGTCATTGTTGGAGCGCTTGTTTTGCTGGTCTTCCTCCCGCTCATAAGTCATGAAGATTTGGTGGTCGG
TCTGTTGCCTGTGAAAGAATCTCAGAGGGAACATGTTCGTTCAGTATTGAGGGATGTGGGGTCATTGGGTGTCGGTGCAG
TATTTTGTTTCATCATGTTACCCACTACGGTGCTGAGGCAGTGGAGGT------TGAAGTA---GAGAGTTATGTGGATG
TGCTGTTGAGGTATATACC-TGCCCTCTTCTCTGTTCTCCTATTGGCGTGACATTATATTCTTTTT--ATAAGCCTACTG
TTTTTGGTTTGGTGAATAATCCTGATAACTTGCGAGTTTTTTATTTGTGTCCCTATCATTTGTAAATGTAAATGAGTAAC
ACTTATTGGTGTAGGTAACTTTATTCCAAACCATTTTGTCGTACACCCCAGTTAGACCTACAAGAAAGTTTGGTTTCTTG
GCTTGTTGATAGATGTTAGCTTTCTTAAAAGTATTTGCAGTTAACAGTGATCTTGTTTGGTACGCATCGCTG---TTTGA
CCAATCAGATCCATATGGTGATATCATTAGTGGAAACCTAGTATGCCTTCTCCATGTTCAGTCATTCCCATGCTTATTAT
GATCGGCCAGCTTTGAA---------------------------------------------------------------
----------------------------TTTATCCACTGAAACCCACTAAGTGGTAGGCCTCAAATTTCTAAGGGTTGGG
TCGTGGTATATCTCCAATTTAATTGCATTATCTTGTTATTTAACTGCCTTTGTTTGCTGTTACATATAAACTTATTGCAT
TGCTTTAGTGAAGATA---------------------------------------------CAAATAGAAATTCAATTGG
AATACTCAAGCAATCCATGATGGTAA--------TATTATAGAACTCATCCTTCATTTAATCCGCAGCTAATATATACTT
GCATGTGGTGTTGTTCCATGACATTTTTGTCGAAGTGCATTTGAAAACACATGTCAATGTTGTAGTAAGATTTTCTTCTC
TTTCATGGGTTATCAGTGCCCCTTTATTTCCCCAAAGTAACTTGAGCCCCTTTATTTCCCCAAAAGCAACTTGTATCGCA
AGAGCAATCTGTAACAAATATTTTTGATAGTTTATA--TGATTATTTGTTAATTATAGTGGTGCTTCTTGTGCAATAAAA
CTGAAAAATACCACTGTTGGGGAGTCAATTCAGTAAAGACTTAACACTGAAATACCACTTCATCGAAAAAACCCAATTCC
TCTGTTTATACCATTCTTTTGTGCCCTGTGGAGTGTGGATTGCCATGCTTTGTTCTGTCCACCAGTCTTCACAGCGTAAT
GCATGTGAATATATAGGGTTCATGATCTCAAGATGGTTTCCATATACCGAAAAAGGCTTTGGCCCTGCTTTTTATAGATA
AAGCATCGACCATCATGCAACCCGATTCAAACACACGGCACCATAT--------CACACGCACACACCCAAGGCCGGATA
CACAGGCACTGAAAT------CAGCAACACCACCCCATACTACTCCAAGCAAACATCAGGTGGACAATAAGCATCACTGT
GGAGTTACTAGGGCCCTCAACCGTGAACGACAATGAGATGAAGCCGCGCATGACAAACCGTGAGCTCCAAGGTGGCGTCT
TCAGGAAGGTCATGACACCGGAGCGCCGCCACCGCCCGATCCAAGGATCAGGGTATCCTTCGGATCCAGACAACGAGTGA
CCGCAACAACGACGCCTTCAAGAAGAGTACGACGCTGAAACGCCGCCACCGCTGGCCTGACCGAAGTCAGAAAGGGTTTT
CACACCAGCCAGCACTCACCGCCACTGAAATGTGGTACGACCTGCCACA
>SNPs
-----S---------------------SS-------------------S----S--S--S-S------------SS--S-
S---------S----S--S-S-----S------S-------------------SSSSS----------------------
----------------S---S---------------S---------SS------S------S------------------
---------S-----------S-------------S-------------SSSS------------S--------SS----
-----S------------S----S---SS---------------S----------------S------------------
---S-----------------------------------S------------------S-----S-S---S---S-----
--------------------------S------------------------------S-----S----------------
S--------S----S------------S-------------------SS---------------------S--S------
-S-S--S---------S---S-S-------------SSS-----S-SSSSSSS----------S----S---S-------
---------S------------------S--S-------S------S-----S--S---------------S---S----
------------S------------SS-S----SSSSSS---------------S-----S-------SSSSSSSS--SS
SS-----S-S------SSS--------S-------------SSSSSSSSS------------------------------
----------SS----S----SSSSSSSSSS--S----------SS-SSSSSSSSS------------------------
-----------------------------------S---------------SSSSSSSSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSS--------------------------------------S---S-S---------------------------
---------S--------S----S---S-------S--------------S-----------S-----------S-----
-----------------------------------------------------------------------------S--
----------------------------------------------------------------------------SSSS
SS------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S----------------------------------------------S-SS------------------------
-----------SS--------S--------------------S-------------------------------S-----
-------------S--S----------------------------------------S----------------------
-----------------------------------------------------S---------------S---S------
-----------------------------------------------------------------------------S--
----------------S---S------------------------------------------S----------------
--------------------------------------------------------------------------------
-S-----------------S----------------------------------------S------S------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSSSSSSS------SSS-S--------S-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------------------------------S------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------SSSS-S--------------------------------------
-------------------------------------------------------------S------------------
------S------S--------------------S------------------------------S--------------
------S----------------------------S----------SSSSSSSS-----S--------------------
---------------SSSSSS---------------S---------S-----------------S---------------
---------------------S-------------------------S--S--SS-----------S-----S-S-SS--
S--------------S--------S---------------------------------S-----------------S---
-------------------------------S----------SS--------S-------------------S---S---
---SS---------------S-------------------S--------
>forward_1008
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----------------------------GAAGTTCCCAAAACCGCTGG--------------------------------
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>reverse_2635
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--------------------------------------------------------------------------GATCGT
GGGGTATCGCCAAT------------------------------------------------------------------
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-------------------------------------------------
>forward_2579
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-------------------------------------------------------------------------------T
GATCGGGCAGCTTTGACTT-------------------------------------------------------------
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>reverse_3837
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----------------------------------------------------------------------------CTTT
CACCACAGCCAGCACT---------------------------------
