>input_sequence_46435
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-----ATATATATATCTAGCAGGAGGGCTGTTTCGTAAAGTTTATCCATGTTGCTACTCGAT-----TGTACTGGGCTGG
GTTGTTTACCAACAATCAGTAAAATATCGTAACCCCTAAAAGAAGGTAAAATATTGTAACCCAATGTGTTTCTAGAGTTG
G-AATACAACGACTCGCAAAAAAAAAAAAATTGGTATACAACACGCGACTCTGAACCCTTTTTGATTTCTGGGCCCATTG
CGGCCCGCTCTTCCAGGCTTAAATATCGTGCAGATGGCTCCACGATCTGAGTGTTCTTATTTACCGATCTGAAAACAACA
CGTCTCTTCTGTCCTGTCAAAAAAACCTACGGATGTCTCTGCCGCCGACGATGTTGACGCTTTTACCAGACGACGTGATC
TCTGAAATACTCTCATGGACGCCGGTGAAGTCCGTCTGCAGATTCCGGTGCTTGTCCC----------------------
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--------------------------GGGGGTGGCTCGCCCTCGTCTCCAGCCAGGCGTTCCTCGCCGCGCACAAGTCCC
AAGTCGACCCGCACCTCCTCCTTGCCACCAGCTCCTCGGGCAAGGAAGCCAGCAACATTGGCCGCGACCTGCGGCTGTTT
GACGAGGAAGGCAATGTCGTGAGAGTGATCAGGAATGTTGGTGCCCTTTGGACGGTCTGCCATGGTGTTGACGGTCCGGT
CTGCGTCACCCGCGATTTTCGTGGTCGTCGCGACGTTTTCGGTGTCAATGTGATCAATCCGGCTACCGGGAGTGTGCTAA
TAACGGCGACCGTTGAGTTGGAGAGCCAAGAGATCTTCCTCTTCAACATCGGTTGTGCCGCCCCATCTGGCGTGTACAAG
GTTGTCCGCTTCGACGATGAGTCTTGGAAGGTTCTCACTTTGGGAGATGATGCCGAGTGGAGTGAATTGCGGTCTCCCGC
AACCACACTGTCAAATTACTTCTATCGGAGCTTCGTGGTCACGGTCAATGGTGTCATGCACTTTCTTTACACGTCACGGA
GATTGCCGTTTTATAAGGACCGTATACTTCGCCTTGATCTCGAGAGGGAAGAATGGAAGGCATCCCTTGAAGGCCCAACA
AAACAAGGTGACCAGTTTCAAAAGCGGCTAACGACGGAATGTATAGTGAGGCTCAATGACACCATCTGCTTGGTTCAGTT
GGAGGAACATTTTGTTACCAACAATAGATGCACGAACCTATGGCTTCTGACTGACTTCGACAAAGGCACCTGGGTCAAAG
CATACACGGTCTCCATGACTCCGACCACCGTTTTATATCGGCCTTTGAGGGTGATGCACGATGGTGGAAAGTTGTTATTC
TATGGCTACCATAGCCCCACGAAAACCCGGATGCTACAGGTTTATGATCCCCTTACTGCTACAAGCGCACACTTCATGAA
GTTTCCGAGAGATTTTCATAGCGATGTTTGTCTTTGCGACTTGAACTTAGAGTGCTTTGTCTGATGTAAGATAATGTTGT
GTTTGGCATTTGAACCGAGCTTGTGTAGCCTTGTCTTTAAAAGTTCTGTTCTTTAGAGACGCGGAGAATAGAGCTAGAGA
CGACCCCTTCAGACGAATATCACTTTGTTTTATCTGATATATATCTTGTTGCTCATGCTTTATTTTAGTTTTATCAATCC
ACTGCAATGTTTTTTGACA-------------------------------------------------------------
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>chr7B_1_TraesCS7B01G399000
AGCCGTTGGGGCGCGCGCGGACGCCGCGATAGCCCGAAGCACCTCGGCGGCGCGGCGGCATGGTGGTGCGAAAAGCTGCG
AAGCGGCGAGCTTGCGAGGGGAGGGCGCGTGGCTGTGTGCGGTGCGCGTGGCGGGCGCGGCAATTTATAGGCGCGCGGTA
AGCGGCGCGCCAAATCTACCGCGCCGTGTGCCGCTTTCTCCCCCCCGCGCGCAAGCGCTTCCCGCGCGCGGTAAGTTCCC
GCCACCGCTGGAGCGCGCGGAATCAGCCGGCGCGCGCTAAATCGCAATTTTACCGCGCGGGCGCGCCTTTTGCCGCGCCT
GTTGGAGATGCTCTAAGAAAGGGGCCATAGCTTTCAAACTTCGGAACCGTTGATGCAGTATGAACATAATTTCAGGGCTA
ATGAAGAGCTGTTAACCTTTTTCAAAGTACTGATGCACTACTGTTTTGTTCCGAGTAGCATTTGTGTTTTGCATTATCAG
TAAATGGCGAAATCTCTCAGTATTTTCCGCTTTTCCTGATGTACGTCTCTGTTTTTCTGGATACAGGGATTTTCTTTACA
GTGTTGGGCGTAGTGATGTTCATCCCTGGATTCTACTACACGAGAATAGCGTATTATGCTTACAAAGGGTACCAGGGCTT
CTCTTTTGCCAACATCCCTCCTATCTGAAGAATGAGTGGCCGAACCTGGTTGGACCGTCTCATCCAATGACCCCTTCTTA
TGAAAATGTAAACATGTTGTGTTCTTTTCTTTAAACCCTTGTACTAGATCGTTGCAGTTGTTATACTTGTACATATAATA
ACAAACAACTAAAATAATGAGAAACCACGACGATATGGTAGTTTCACCTGATAGCTTGTTAATTGTGTGAC--TATATAT
TGATGAAAGGGCTTCTCTTGTCGATATCACCCAGACAGTTTGTTGTGATTGCTGCTCTGTCTGTTGGTTCTTCGGATTAT
TAAAAC-------------------------------------------TATTTTTTCAGATAAGCTTGCCCTTGTTTTA
GTGGGATATATATATCTAGCAGGAGGGCTGTTTCGTAAAGTTTATCCATGTTGCTACTCGAT-----TGTACTGGGCTGG
GTTGTTTACCAACAATCAGTAAAATATCGTAACCCCTAAAAGAAGGTAAAATATTGTAACCCAATGTGTTTCTAGAGTTG
G-AATACAACGACTCGCAAAAAAAAAAAAATTGGTATACAACACGCGACTCTGAACCCTTTTTGATTTCTGGGCCCATTG
CGGCCCGCTCTTCCAGGCTTAAATATCGTGCAGATGGCTCCACGATCTGAGTGTTCTTATTTACCGATCTGAAAACAACA
CGTCTCTTCTGTCCTGTCAAAAAAACCTACGGATGTCTCTGCCGCCGACGATGTTGACGCTTTTACCAGACGACGTGATC
TCTGAAATACTCTCATGGACGCCGGTGAAGTCCGTCTGCAGATTCCGGTGCTTGTCCC----------------------
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--------------------------GGGGGTGGCTCGCCCTCGTCTCCAGCCAGGCGTTCCTCGCCGCGCACAAGTCCC
AAGTCGACCCGCACCTCCTCCTTGCCACCAGCTCCTCGGGCAAGGAAGCCAGCAACATTGGCCGCGACCTGCGGCTGTTT
GACGAGGAAGGCAATGTCGTGAGAGTGATCAGGAATGTTGGTGCCCTTTGGACGGTCTGCCATGGTGTTGACGGTCCGGT
CTGCGTCACCCGCGATTTTCGTGGTCGTCGCGACGTTTTCGGTGTCAATGTGATCAATCCGGCTACCGGGAGTGTGCTAA
TAACGGCGACCGTTGAGTTGGAGAGCCAAGAGATCTTCCTCTTCAACATCGGTTGTGCCGCCCCATCTGGCGTGTACAAG
GTTGTCCGCTTCGACGATGAGTCTTGGAAGGTTCTCACTTTGGGAGATGATGCCGAGTGGAGTGAATTGCGGTCTCCCGC
AACCACACTGTCAAATTACTTCTATCGGAGCTTCGTGGTCACGGTCAATGGTGTCATGCACTTTCTTTACACGTCACGGA
GATTGCCGTTTTATAAGGACCGTATACTTCGCCTTGATCTCGAGAGGGAAGAATGGAAGGCATCCCTTGAAGGCCCAACA
AAACAAGGTGACCAGTTTCAAAAGCGGCTAACGACGGAATGTATAGTGAGGCTCAATGACACCATCTGCTTGGTTCAGTT
GGAGGAACATTTTGTTACCAACAATAGATGCACGAACCTATGGCTTCTGACTGACTTCGACAAAGGCACCTGGGTCAAAG
CATACACGGTCTCCATGACTCCGACCACCGTTTTATATCGGCCTTTGAGGGTGATGCACGATGGTGGAAAGTTGTTATTC
TATGGCTACCATAGCCCCACGAAAACCCGGATGCTACAGGTTTATGATCCCCTTACTGCTACAAGCGCACACTTCATGAA
GTTTCCGAGAGATTTTCATAGCGATGTTTGTCTTTGCGACTTGAACTTAGAGTGCTTTGTCTGATGTAAGATAATGTTGT
GTTTGGCATTTGAACCGAGCTTGTGTAGCCTTGTCTTTAAAAGTTCTGTTCTTTAGAGACGCGGAGAATAGAGCTAGAGA
CGACCCCTTCAGACGAATATCACTTTGTTTTATCTGATATATATCTTGTTGCTCATGCTTTATTTTAGTTTTATCAATCC
ACTGCAATGTTTTTTGACAATAAACAATGTTAATTGTGTGATTATGTTAAGCTTTCAGCCTGTTACACGCTTGGCTACTG
CATGTTGTTCGGTAGCCGTGATGTCCACCAAGACAGTTTGATGTCCTGCTGATCGTGTCTGACAGTCGGTTCTTGGGTTC
CTTGAACTATTATGAATGTAGCCGTGCTGCCCAGCAGCTTTGCCCTGCTTAATCGTGTTATTTAGCATGAGTACAGTTCC
ATCACAGTGTATTTGGACCGGTTTGCTTACCGTGAGTATAAAGAGATTGTTCCGGTCACCATCTTTGTTTCAGTTTCTCC
GTGGTAAATTAAATCACCCAATGGGTTCCAGACTTCTTTTTTAGGAACAAGGATTCCGGACTTGGTATAATACACGGCTT
GGATTCTGAATCCTTTTCGTGGTCCGGCTCTCTAATGGTAAATACCGAGCAGATTTTTTTTTTCTTTGGCTTCCAGACTT
GGTATACAACGCGGCGCTGCGGCAGCTTTAAATCCGAATCCTTTCCGATGTCTATGGTCATCGTGGCCTCGTCTCCAAGC
TTAAATATCGAGCAGCTGGCTACACGATGGCTACACGAGGCATCGACCAATCCCAGAGCAATACTTTTTGTTCTCGCCCG
CCCTCTCAAAAACCTACAGCCGTTTCTGCCATGGCGTCGCCAGCGATGCTGCCGTCGTTACCCGACGACTTGATCTCCGA
AATACTCTCATGGGTGCCGGTGAAGTCCGCGTGCAGATTCTGCTGCGTGTCCAGGGGGTGGCATGCCCTCATCTCGGGCC
CGGCGTTCGTCGCCATGCACAGGTCCCGCACCGACCCGCAGCTTCTCCTCCTCGCCGTCAGCTACCACCGCAAGGAAGGC
GGTGGCATAAGTGGCGACCTACAGTTGGTGGACGTGGATGGTGAAGTCATGCGAGTGAACAAGAGCGTAGGCGTCTTTTG
GACCATCTGTTACGGTCGTGACGACGCCCCAGACTGTGTCACCTTCGATTTCCGCGAGC
>chr7D_517
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------------------------------------TGATGTACGTCTCTGTTTTTCTGGATACAGGGATTTTCTTCACA
GTGCTGGGCGTAGTGATGTTCATCCCTGGATTCTACTACACAAGAGTAGCGTATTATGCTTACAAAGGGTACCAGGGCTT
CTCTTTTGCCAACATCCCTCCCATCTGAAGCAGCAGTGGCTGAACCTGGTTGGACCGTCTCATCC--------CTTCCTA
TAAAAATGTGAACATGTTT--TTTTTTTCTTTAAACCCTTATAGATTGTAGTAGTAGTTGTACAT------------ATA
ACAAACAACTAAAATAATGAGAGACCACGACGATATGGTAGTTTCACCTGATAGCCTGTTAATTGTGTGATTATATATAT
TGATGAAAGGGCTTCTCTTGTCGATATCACCAAGACAGTTTGTTGTGAT-GCTGCTCTGTCTATTGGTTCTTCGGACTAT
TAAACCCAAATAATAAGTGTCACACGTGTGTCACGAAACACTCCGGCCTTATTTTTTCAGATAAGCTTGT-CTTGTTTTA
GTGGGATATCTAT--CTAGCAGGAGGACCGTTTCATAAAGTTTATCCATGTTGCTTGCACTCGAGTGTGTACTGGGCTGG
GTTGTTTACCGATCA------------------------------GTAAAATATCGTAACCCAATGTGTTTCTAGAGTTG
GTAATACAACCAAAGAG-AAAAAAAAAAAGCTGGTATACAA--CGCGACTCCGAGCCCTTCTCGATTTCTGGGCCCATTG
CGGCCCCCTCTTCCAGGCATAAATATCGTGCAGATGGCTCCACGATCTGAGTGTTTTTATTTACCGATAAC---------
---------------------AAAACCTACGGATGTCTCTGCCGCCGACGATGCTGACGTGTTTACCAGACGACCTGATC
TCCGAAATACTCTCATGGACGCCGGTGAAGTCCGTCTGCAGATTCCGGTGCTTGTCCAGGGGGTGGCATGCCGTCGTCTC
CAGCCCAGCGTTGCATGCCGTCGTTGTCCAGGGGGTGGCATGCCGTCGTCTCCAGCCCAGCGTTGCATGCCGTCGTTGTC
CAGGGGGTGGCATGCCGTCGTCTCCAGCCCAGCGTTGCATGCCGTCGTTGTCCAGGGGGTGGCATGCCGTCGTCTCCAGC
CCAGCGTTGCATGCCGTCGTTGTCCAGGGGGTGGCATGCCGTCGTCTCCAGCCCAGCGTTCCTCGCCGCGCACAAGTCCC
GGGTCGAGCCGCACCTCCTCCTTGCCACCAGCTCCTCGGGCAAGGAGGCCAGCAACGAGGGCCGCGACTTGCGGCTGTTT
GACGAGGAAGGCAATGTCGTGAGAGTGATCAAGAGTGTTGGTGCCCTTTGGACGGTTTGCCATGGCCTTGACGGCCCGGT
CTGCGTCACCCGCGATTTTCGTGGTCGTCGCGAAGTTTTTGACGTCAATGTGATCAATCCGGCTCCCGGGAGTGTTCTAA
TAATGGCGACCGTTGAGTTGGAGAACCAAGAGTTCTTCCTCTTCAACATCGGTTGTGCCGCCCCGTCTGGCGTGTACAAG
GTTGTCCACTTCAATTACAAGTCTTGGAAGGTTCTCACTCTGGGAGATGACGCCAAGTGGAGGCAGATGAGGTCTCCAGC
AACCAAACTGTCTAACTACTATTATCGGAATTTCATGGTCACGGTCAATGGTGTCATGCACTTTCTTTACACGTCACGTA
GGTTGCCG------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S---
---S-------------------------------------S---S----------------------------------
---------------------S--------S-SS------S------------------------SSSSSSSS----S--
-S-------S--------SSS--S----------------S--SSSSS-S--S-S------SSSSSSSSSSSSSSSS---
----------------------S--------------------------------S--------------S---------
-------------------------------S-----------------S------------S-------------S---
----S----------------------------------------------------------------SS---------
---------S---SS-----------S-S-----S--------------------SSSSSSS------------------
----------S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-------------------------
----------S-SSSSSS-----------SS----------SS--------S--S-----S-S-----------------
------S-----------S------------------------------------S------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--------------------------------S-----SS-------------S-----
--S------------------------------------------------------S----------------------
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-----------------------------------SS---S------------SS-------------------------
SS-----S--------------------------------------S---------SSS---------S-----------
-------------------------------S--S---------------------S--------SS-------S-----
---------------------------------S-----S-SS---------------------S----------S----
---S--------------------S-------S-------------------------------S---------------
-------S----S-SS-SS--------------------S----------S---S-------SS-SS--S-------S--
-----S------S--S----SS-------SS---S-------------------------------------------S-
-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_377
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-------------------------------------ACTTCGGAACCGTTGATGCA-----------------------
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>reverse_2460
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-----------------------------------------------------------ACAAAGGCACCTGGGTCAAA-
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>forward_379
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---------------------------------------TTCGGAACCGTTGATGCAGT---------------------
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>reverse_2517
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------------------------------------ATCGGCCTTTGAGGGTGATG------------------------
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>forward_2479
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-----------------------------------------------------------ACAAAGGCACCTGGGTCAAA-
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>reverse_3769
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--------AAGTGGCGACCTACAGTTGG----------------------------------------------------
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