>input_sequence_46385
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---GTCTCTCTCCCTTCCCTTGTTCCTAAACCCGCCTCTCTCTCCCTCTTTCACACACGCCTCTTCCTCTTCCTCTC---
----------TCTCTCGGCTTCCATTTCCTCTTCTTCTAGCTAGCTTGCTTCGGTGCCCGGCGGAGTTGGGGCACGCGCG
CGCGCGCGGAGATGTCTGAGGCGTCGGTGGTAAACCAGGCGGAGGTGGAGGACGCGGCGGCGGCGGCGGCGGCCGGGCTG
GACCTGCCGCCGGGGTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGCGCTCGACCA
CCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGCATCTCCCAGGTACACAACACACCC
AAATTAAGCTGCTCCTTTGCGCGCA-----------CTTGCTTGATCCGAGCCCGAGCGGCCGTGGGAATCTTGCCTTAC
TTAGTCGCGTGTTTCCACCGGACAGGCAAGGCCAAGATGGGCGAGAAGGAGTGGTACTTCTTTTGCCACAAAGACCGCAA
GTACCCGACGGGGACGAGGACGAACCGCGCCACCGAAAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCC
GGGGGAGGGGCATCCTCGTCGGAATGAAGAAGACGCTCGTCTTCTACCTAGGCCGCGCCCCCCGCGGCGAGAAGACCGGC
TGGGTCATGCACGAGTTCCGCCTCGAGGGCAAGCTCACTCACCCGCTCCCGCGCTCCGCCAAGGTTTGCTTTCGATCCTC
CTTCCTGATTCATTATCAATTATTTTTCTCCTTAATTTCTCTCTGGCTTCATTCATGAG----TGCTAAATATGAGTATA
TGATTCGCGTGCAGGACGAGTGGGCCGTGTCCAAGGTGTTCAACAAAGAGCTCACGGCCACCAACGGGGCAATGGCAGCG
GCGGAGGCCGGGATCGAGCGAGTCAGCTCCTTGGGCTTCATCACTGACTTCCTTGACTCTGGGGAGCTGCCGCCCCTCAT
GGACCCTCCCTTGGGCGGCGACGTCGACGAAGTCATCGATTTCAAGTCCACCTCTGCCTACGCCACCGGTGCCCATTCCG
GACTCCAGGTTAAGATGGAACAGCACATG---------CCGCCGCACATGATGTACTCGAGCCCCTACTTCTCCCTGCCG
GCCGCCAACTCCGGCGACATGTCGCCGGCGATCCGGAGGTACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCTGCGCT
CAGCCCGTCCCGCGAGACCGGGCTGAGCACCGACCCCAACGCCGCCGGTTGCGCGGAGATCTCATCGGCGGCGACACCGT
CGTCTCAGAATCAAGAGTTCCTTGACCAATTCGACGAGTACCCCGCCCTGAACCTCGCCGACATTTGGAAGTACTGAAGC
CGGCCGGAGCTGCACCTACCACAT------GATTCTCGC-TCGATTGGTTCTGGCTCGTTGATTAATTACTCAGTTGGAT
TACTTAACTTGGTGTGTGATGCTCGTGTTAGTGGTTTGCTGATGCAGCATCATCTTCTTTCCGGAGGACTCTCG-----G
GTCGGATCAGGTTACTATCTATCCAGACAGACCGACAGACCTCCAGGGATTAGCTAGGCATCC----------TTAATCA
TGTTATTAAATTAATTAGTCCTAG--------------------------------------------------------
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-------------------------------------------
>chr4B_1_TraesCS4B01G174000
GGAGCGCGTCACCATTTCGCCTTTCTTTTAAAGCTGGAGATGTGTACCGCTTGATGAGTGAAAGGTTGAAAACTTTGGGA
CCGCTCCCCGATGATGGCACCGAGCGTGTCCTGTCCACTTGGGAAAGGGAAAACCCTGCTCGGCGAGTCGGATGCTCATC
GCTTTTGGCTC-GGCCGCAAGGCAAAGCGCGCGCGTATCTTTGCAGAAAATTGTGGTGGTCGCGGGCTCTCTCGATGGCA
CGTCGTTCCTGT---AAACAGACAACCCAAGAAAGTCTCGAACTAAAAAGATGCGGATGAGAAAGCAGACGGGAACGGGA
CAACCACGGATCAATATGTGACGTGAACTGGATGTGTGGACTCCGCGAGAGTTACAAA--TAGCTGCCATAGCAACCTCT
GATCATCCTTTGATTTGATT-GAAAGAAACTGGATGTGGTTAGTGTTACTACTCTATGGTTCTTGCGTTGTGGCCGAGAG
CGGATGAGTTGAATTCTTGTGGATGCA------TGTGGGGATATGCCGGTTTCCTTCCAAAGTCAGAGTAATCAAACCAA
CATTAAATC-AATGTGTATATGTATGAACTACTACTACTACTACTACTCCTACTATGGGTTTTTATTTAAGGGAGAAAAT
ATT--TTATAAATAAGAAGAAGTCAGGTTGTGTCCAACGCATCGTTGCCGCGTTAGCCGTGATCGGACGTGAATATTCAT
TCCACGGGACAGGACACGGGCCGGTGGAGGAGGAGAAAATACTCTGAATGTGAGAGAGTTCTTTTTTTTTTCTGAATGTG
AGAAAGTTGGGGCCT----AGGTAGAGGATGAATCAAGAGCCATTAAGATTAGGACAAGTAATTAGAGTTGCTTACGGGG
CACA------ACTCCGCGCGGTAAGAAG-------TGGGAGGGGTCTTGGCCCGCAAGCCGCCTCCCGCACGCAGCACGC
CTCTCTCTCTCTCT----------GCGCGAGTGACCGCGTGGAGCCTTATATAAGCCGGTCCTCGGTTCCTCCCCCCGGC
CCAGTCTCTCTCCCTTCCCTTGTTCCTAAACCCGCCTCTCTCTCCCTCTTTCACACACGCCTCTTCCTCTTCCTCTC---
----------TCTCTCGGCTTCCATTTCCTCTTCTTCTAGCTAGCTTGCTTCGGTGCCCGGCGGAGTTGGGGCACGCGCG
CGCGCGCGGAGATGTCTGAGGCGTCGGTGGTAAACCAGGCGGAGGTGGAGGACGCGGCGGCGGCGGCGGCGGCCGGGCTG
GACCTGCCGCCGGGGTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGCGCTCGACCA
CCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGCATCTCCCAGGTACACAACACACCC
AAATTAAGCTGCTCCTTTGCGCGCA-----------CTTGCTTGATCCGAGCCCGAGCGGCCGTGGGAATCTTGCCTTAC
TTAGTCGCGTGTTTCCACCGGACAGGCAAGGCCAAGATGGGCGAGAAGGAGTGGTACTTCTTTTGCCACAAAGACCGCAA
GTACCCGACGGGGACGAGGACGAACCGCGCCACCGAAAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCC
GGGGGAGGGGCATCCTCGTCGGAATGAAGAAGACGCTCGTCTTCTACCTAGGCCGCGCCCCCCGCGGCGAGAAGACCGGC
TGGGTCATGCACGAGTTCCGCCTCGAGGGCAAGCTCACTCACCCGCTCCCGCGCTCCGCCAAGGTTTGCTTTCGATCCTC
CTTCCTGATTCATTATCAATTATTTTTCTCCTTAATTTCTCTCTGGCTTCATTCATGAG----TGCTAAATATGAGTATA
TGATTCGCGTGCAGGACGAGTGGGCCGTGTCCAAGGTGTTCAACAAAGAGCTCACGGCCACCAACGGGGCAATGGCAGCG
GCGGAGGCCGGGATCGAGCGAGTCAGCTCCTTGGGCTTCATCACTGACTTCCTTGACTCTGGGGAGCTGCCGCCCCTCAT
GGACCCTCCCTTGGGCGGCGACGTCGACGAAGTCATCGATTTCAAGTCCACCTCTGCCTACGCCACCGGTGCCCATTCCG
GACTCCAGGTTAAGATGGAACAGCACATG---------CCGCCGCACATGATGTACTCGAGCCCCTACTTCTCCCTGCCG
GCCGCCAACTCCGGCGACATGTCGCCGGCGATCCGGAGGTACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCTGCGCT
CAGCCCGTCCCGCGAGACCGGGCTGAGCACCGACCCCAACGCCGCCGGTTGCGCGGAGATCTCATCGGCGGCGACACCGT
CGTCTCAGAATCAAGAGTTCCTTGACCAATTCGACGAGTACCCCGCCCTGAACCTCGCCGACATTTGGAAGTACTGAAGC
CGGCCGGAGCTGCACCTACCACAT------GATTCTCGC-TCGATTGGTTCTGGCTCGTTGATTAATTACTCAGTTGGAT
TACTTAACTTGGTGTGTGATGCTCGTGTTAGTGGTTTGCTGATGCAGCATCATCTTCTTTCCGGAGGACTCTCG-----G
GTCGGATCAGGTTACTATCTATCCAGACAGACCGACAGACCTCCAGGGATTAGCTAGGCATCC----------TTAATCA
TGTTATTAAATTAATTAGTCCTAGGTTCATATCTTGATCTGTGTGTACATATCACTACAA------CTATATTCTGATTG
TGATTAATTACTAGCAGTAGCAGCATGATGGT---TATACAATTAATGTGTGTAGATTAGGGGGGACGACTTCAGATCCA
TTTGTGAATCGATTAATTTGGGCGCCGTTGATGAGCCAGCCAGCTAGCTCTACTACTAGTA-------------GCTTTG
TATGTACATGTACCACCATTGATCATTAATTGCTTGAGTTTGACATGTCACTATGTGAATCGGTGCTT-GTGTTCTCTCT
GTACCGCTTTGCACTTGCTAATTAATCACTGGGTTGCTCCT---------------------------------------
--TTCTGGTGCTGCTCATGGGG------------------------------ACCTTCCGAAATCTAGCAAGGGGAGATA
TGAGATAA---------------ATGGTTTTGGGCCGACGGATGGGGCCACCGCGGGCT------------CCAATTATT
CCCGGAGCACGTCGTGGTCATGGCGTCCAGTTGGTGAACTCGACACA--TAGACGTACTACCCCTC--------------
-----TACAAGCTGCAGCCTTATCTCGTTTCGGAAAACCCTCGGCCCGCCCCGC----GTCTCTCGTGTCTCCAAGCGAT
CCAGCAGCAACGGAAGAGAGGAAGGAAACGAGCACATCCGTTGATCCTAACCAACCAAACAGCCAACCAAGAACCAACCC
TAGCTCGACGCGGGGTGTGGGGGC--------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GAAAACTTGTCGCTCACACAC
ACGCCGGCCGACGGCGACGAGCGGGACGGG-----CCAGCCGCTCTCTCGCCCTCGATTTTGCGTGCGCGCACAG--CAT
-------ACAGTCACATATAGAGGTGAGGCGCGCCGGGAAC-----CGCTTGCTTTCCGTTGGACGCAAGGTGT------
------GGCGATCTATTCGCTGTTGGCACGCGCTCGCTTCCTTCCTGCATCAAAACCCGGCCAAGACGAAGACGGTGCAG
CAAGGAAAAGGATGCGAGGATCAGCAGGAATCTTCCATCCATTCCTTTT-TTCTTTTTTTGTGAAAGAATCATTCATCCA
TCTATATTCATTCATTCA------GCTGCGACGCATGGAAATA
>chr4A_1
GGAGCGCGTCACCATTTCGCCTTCCTTTTAAAGCGGGAGATGTATACCGCTTAATGAGTGAAAGGTTGAAAACTTTGGGA
GCGCTCCCCGATGATGGCACCGCGCGTGTCCTGTCCACTTGGGAAAGGGAAACCCCTGCTCGGCGAGTCGGATGCTCATC
GCTTTTGGTTC-GGCCGCGAGGCAAAGCGCGCGCGTATCTTTGCAGAAAATTGTCGTGGTCGCGGGCTCTCTCGATGGCA
CGTCGCTCCTGT---AAACAAACGACCCAAGAAAGTCTCGAACTAAAAAGATGCGGAGGAGAAAGCAGAAGGGAACGGGA
CAACCACGGATCAATATCTGACGTGAACTGGATGTGTGGATTCCGCGAGAGTTACAAATATAGCTGCCATATCAACCTCT
AATCATCCCTTGATTTGATTAAAAAAAAACTGGATGTGGTTAGTGTTACTACTCTATGGTTCTTGCGTTGTGGCCCAGCG
CGGATGGGTTGAATTCTTCTGGCTGCATGTGGCTGCCGGAGTATGAA----------CAAAGTCAGAGTAATCAAACCAA
CATTAAAACAAATGTGTATATGTATGAACTACCAGTACTGGTGTGGG--------------TTTATTTAAGGGAGATTTT
TTTTGTTATAAATAATAAGAAGTCAGGTTCTGTCCAACGCATGATTGCCGCGTTAGCCGTGATCGGACGTGAATATTCAT
TCCAGAGGACAGGACACCGGCCGGTGGTGGAGGAGAAGATACTCTGAATGTGAGAGCG---TTTTTTTTTTCTGAATGTG
AGAGAGTTGGGGCCT----A---AGAGGATGAATGAGGAGCCATTAAGATTAGGACAAGTAATTAGAGTTGCTTACGGGC
CACA------ACTGCGCGCGGTAAGAAGTGAAAGATGGGAGGGGTCTTGGCCCGCAAGCCGCCTCC-GCACGCGGCACGC
CTCTCTCTCTCTCTCTCTCTCTCTGCGCGAGTGACCGCGTGGAGCCTTATATAAGCCGGCCCTCGGTTCCTCCCCCCGGC
CCAGTCTCTCCCCCTTCCCTTGTTCCTAAACCCGCCTCTCTCTCCCTCTTTCACACACGCCTCTCTCTC-----CTC---
----------TCTCTCGGCGTCCATTTCCTCTTCTTCTAGCTAGCTTGCTTCGGTGCCCGGCTT----------------
-----GCGGAGATGTCTGAGGCGTCGGTGATAAACCAGGCGGAGGTGGAGGACGCGGCGGCGGCGGC------CGGTCTG
GACCTGCCGCCGGGCTTCCGGTTTCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGCGCTCGACCA
CCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGCATCTCCCAGGTACACAACACACCC
AAATTAAGCTGCTCCTTTGCGCGCACTTTCTCTCATCTTGCTTGATCCGAGCCCGACCGGCCGCGGGAATCTTGCCTTAC
TTACTCCCGTGTTTCTACCGGACAGGCAAGGCCAAGATGGGCGAGAAGGAGTGGTACTTCTTTTGCCACAAGGACCGCAA
GTACCCGACGGGGACGAGGACGAACCGCGCCACCGAGAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCC
GCGGGAGGGGCCTCCTCGTCGGAATGAAGAAGACGCTCGTCTTCTACCTAGGCCGCGCCCCCCGCGGCGAGAAGACCGGC
TGGGTCATGCACGAGTTCCGCCTCGAGGGCAAGCTCCCCCACCCGCTCCCGCGCTCCGCCAAGGTTTGCTTTCG---CTC
CTTCCTGATTCATTATCAAGTATTTTTCTCCTTAATTTCTTTCTGGCTTCATTCATGATTTGCTGCTAAATATGA-TATA
TGATTCGCGTGCAGGACGAGTGGGCCGTGTCCAAGGTGTTCAACAAAGAGCTCACGGCCACCAACGGGGCAATGGCAGCG
GCGGACGCCGGGATCGAGCGGGTCAGCTCCTTCGGCTTCATCACTGACTTCCTTGACTCTGGGGAGCTGCCGCCCCTCAT
GGACCCTCCCTTGGGCGGCGACGTCGACCAAGTCACCGATTTCAAGTCCACCTCTGCCTACGCCACCGGTGCCCATTCCG
GACACCAGGTTAAGATGGAACAGCACATGCCGCAGCAGCCGCCGCACATGATGTACTCGAGCCCCTACTTCTCCCTGCCG
GCCGCTAACTCCGGCGACATGTCGCCGGCGATCCGGAGGTACTGCAAGGCAGAGCAGGTCTCGGGGCAGACGTCTGCGCT
CAGCCCGTCCCGCGAGACCGGGCTGAGCACCGACCCCAACGCCGCCGGTTGCGCGGAGATCTCGTCGGCGGCGACACCGT
CGTCTCAGAATCAAGAGTTCCTTGACGAATTCGACGAGTACCCCGCCCTGAACCTCGCCGACATTTGGAAGTACTGAAGC
CAGCCGGAGCTGCACCTACCGCAT------GATTCGCTCGTCGATTGGTTCTGGCTCGTTGATTAATTACTGAATTGGAT
TACTTAACTTGGTATGTGATGCTGGTGTTAGTGGTTTGCTGATGCAGCATCATCTTCTTTCCGGAGGATTCTCGGGTCGG
ATCGGATCAGGTTA----CTATCCATCCATCCAGACAGACCTCCAGGGATTAGCTAGGCCTCC----------TTATGTT
A---ATTAATTAAATTAGTCCTCGGTTCATATCTTGATCTGTGTGTACATACCACTACCACAACAGC--TATTCTGATTG
TGATTA-------GCAGTAGCAGCATGATGGT---CATACAATTAATGTGTGTAGATTAGGGGGGACGACTTGAGATCCA
TTTGTGAATCGATTAATTTGGGCGCTGTTGATGAGCCAGGCAGCTAGCGCTACTACTAGCTTTGTATGGAATCCGCTTTG
TATGTACATGTACCACCATTGATCATTAATTGCTTGAGTTTGACATGTCACTATGTGAATCGATGCTT-GTGTTCTCTCT
GTGCCGCTTTACACTTGGTAATCAATCAAGACGAG-----------------ACTCGACGAGACGAGAGGCACTGGTACC
AGTTGTGGTGCTGCTCATGGGGACCTTCCGAAATCTTTTTTTTTTTGAGACAACCTTCCGAAATCTAGCAAGGGGAGATA
TGACATGGATGGATGGATGGATCATGGTTTTGGGCCGACGGATGGGGCCTCCGCGGGCTTGTTTGGATCGCCCAATTATT
CCCGGAGCACGTCGTGGGCATGGCGTCCAGTTGGCGAACTC---------------------------------------
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-------------------------------------------
>chr4D_1
GGAGCGCGTCACCATTTCGCCTTCCTTTTAAAGCGGGAGATGTATACCGCTTGATGAGTGAAAGGTTGAAAACTTTGGGA
CCGCTCCCCGATGATGGCACCCAGCGTGTCCCGTCCACTTGGGAAAGGGAAA-CCCTGCTCGGCGAGTCGGATGCTCATC
GCTTTTCAGTTGGGCCGCGAGGCAAAGCGCGCGCGTATCTTTGCAGAAAATTGTCGTGGTCGCGGGCTCTCTGGATGGCA
CGTCGCTCCTGTAATAAACAAACAACCCAAGAAAGTCTCGAACTAAAAAGATGCGGATGAGAAAGCAGAAGGGAACGGGA
CAACCACGGATCAATATCTGACGTGAACTGGATGTGTGGACTCCGCGAGAGTTACAAATA-AGCTGCCATAGCAACCTCT
GATCATCCTTTGATTTGAGTGGAAAAAAACTGGATGTGGTTAGTGTTACTAATCTATGTTTCTCGCGTTGTGGCCCAGCG
CGGATGGGTTGAATTCTTCTCGCTGCATGTGGGTGTGGGGATATGCCGGTTTCCTTCCAAAGTCAG-GTAATGAAACCAA
CATTAAATC-AATGTGTATATATATGAACTACTAGTACTACTGTGGG--------------TTTATATTTAAT-------
-----------ATAAGAAGAAGTCAGGTTCTGTCCAACGCATGATTGCCGCGTTAGCCGTGATCGGACGTGAATATTCAT
TCCACGGGACAGGACACCGGCCGGTGGAGGAGGAGAAAATACTCTGAATGTGAGAGAG---TTGGG--------------
-----GTTGGGGCCTAAGGA---AGAGGATGAATCAAGAGCCATTAAGATTAGGACAAGTAATTAGAGTTGCTTACGGGC
CACACCCACAACTGCGCGCGGTAAGAAGTGAAAGACGGGAGGGGTCTTGGCTCGCAAGCCGCCTCC-GCACGCGGCACGC
CTCTCTCTCTCTCTCTCTCTCTCTCTGGGAGTGACCGCGTGGAGCCTTATATAAGCCGGCCCTCGGTTCCTCCCCCCGGC
CCAGTCTCTCTT-----CCTTGTTCCTAAACCCGCCTCTCTCTCCCTCTTTCACACACGCCTCTCCCTCTTCCTCTCGCT
CCTCTCTCTCTCTCTCGGCGTCCATTTCCTCTTCTTCTTGCTAGTTTGCTTCAA----------AGTTGGGGCA----CG
CGCGCGCGGAGATGTCTGAGGCGTCGGTTTTAAACCAGGCGGAGGTGGAGGACGCGGCGGCGGCGGC------CGGGCTG
GACCTGCCGCCGGGCTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGCGCTCGACCA
CCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGCATCTCCCAGGTACACAACACACCC
AAATTAAACTGCTCCTTTGC----ACTTTCTCTCATCTTGCTTGATCCCAGCCCCACCGGCCGCGGGAATCTTGCCTTAC
TTACTCGCGTGTTTCGTCCGGACAGGCAAGGCGAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGCCACAAAGACCGCAA
GTACCCGACGGGGACGAGGACGAACCGCGCCACCGAGAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCC
GGGGGAGGGGCGTCCTTGTCGGAATGAAGAAGACGCTCGTCTTCTACCTAGGCCGCGCCCCCCGCGGCGAGAAGACCGGC
TGGGTCATGCACGAGTTCCGCCTCGAGGGCAAGCTCCCCCACCCGCTCCCGCGCTCCGCCAAGGTTTGCTTTCG---CTC
CTTCCGGATTCATTATTAAGTATTTCTCTCCTTAATTTCTTTCTGGGTTCATACATGATT---TGCTAAATATG---ATA
TGATTTGCGTGCAGGACGAGTGGGCCGTGTCCAAGGTGTTCAACAAAGAGCTCACGGCCACCAACGGGGCAATGGCAGCG
GCGGAGGCCGGGATCGAGCGAGTCAGCTCCTTCGGCTTCATCGGTGACTTCCTTGACTCTGGGGAGCTGCCGCCCCTCAT
GGACCCTCCCTTGGGCGGCGACGTCGACGAAGTCATCGATTTCAAGTCCACCTCTGCCTACGCCACCGGTGCCCATTCCG
GGCTGCAGGTTAAGATGGAACAGCACATGCCGCAGCAGCCGCCGCACATGATGTACTCGAGCCCGTACTTCTCTCTGCCG
GCCGCTAACTCCGGCGACATGTCGCCGGCGATCCGGAGGTACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCTGCGCT
CAGCCCGTCACGCGAGACCGGGCTGAGCACCGACCCCAACGCCGCCGGTTGCGCGGAGATCTCGTCGGCGGCGACACCGT
CGTCTCAGAATCAAGACTTCCTTGACCAATTCGACGAGTACCCCGCCCTGAACCTCGCCGACATTTGGAAGTACTGAAGC
CGGCCGGAGCTGCACCTACCACATCCACATGATTCTCGC-TCGATCGGTTCTGGCTCGTTGATTAATTACTGAATTGGAT
TACTTAACTTGGTGTGTGATGCTG--GTTAGTGGTTTGCTGATGCAGCATCATCTTCTTTCCGGAGGATTC-----TCGG
GTGGGATCAGGTTA----CTATCCAGACAGACAGACAGACCTCCAGGGATTAGCTAGCTATAGGCTTCCTTAATTATGTT
A---ATTAAATTAATTAGTCCTAGGTTCATATCTTGATCTGTGTGTACATATCACTACAA------C--TATTCTGATTG
TGATTAATTACTAGCAGTAGCAGCATGAGATGGAGTATACAATTAATGTGTGTAGATTAGGGGGGACGACTTCAGATCCA
TTTGTGAATCGATTAATTTGGGCGCCGTTGATGAGCCAGCCAGCTAGCGCTACTA-------------------GCTTTG
TATGTACATGTACCACCATTGATCATTAATTGCTTGAGTTTGACATGTCACTATGTGAATGGATGCTTTGTGTTCTCTCT
GTACCGCTTTAAGCTTGTTAATTAATCGCTGGGTTACTCCTTTGTGGGCGCAACTCGACGAGACGAGAGGCACTAGTACC
AGTTCTGGTGCTGCTCATGGGG------------------------------ACCTTCCGAAATCTAGCAAGGGGAGATA
TGGG-------------TGGATCATGGTTTTGGGCCGACGGATGGGGCCACCGCGGGCTTGGTTGGATCGTCCGATTATT
CCCGGACCACGTCGTGGTCATGGCGTCCAGTTGGTGAACTCGACACACATAGACGTACTCCTGCTAGGCGCCGAGGTAGG
CTACGTACAAGCTGCAGCCTTATCTCGTTTCGGAAAACCCTCGGCCCGCCCCGG----CTCTCTCGTGTCTCCAAGGCT-
--------------------------------------------------CCAAGCGATC-----------AACCAACCC
CAGCTCGACGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAACTTGTCGCTCACACAC
ACGGCGGCCGACGGCGACGAGCGGGACGGGACGGGCCAGCCGCTCGCTCGCCCTCGATTTTGCGTGCGCGCACAGCACAC
-------ACAGACACATACAGAGGTGAGGCGCGCCGGGAAC-----CACTTGCTTTCCGGTGGACGCAAGCCGTGGCGAG
TTTCGCGGCGATCTATTCGCTGTTCCCACGCGCTCGCTTCCTTCGTGCATCAAAACCCGGCCAAGACGAAGGCGGTGCAG
CAAGGAAAAGGATGCGAGGATCAGCAGGAATCTTCCATCCATTCCTTTT-TC--TTTCTAGTGAAACAATCATTCATCCA
TTCAT--TCATTCAGAGTAGTGCTGCTGCGACACATGGAAATA
>chr4A_3122
TACG----------------------------------------------------------------------------
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---------AGCTGCAGCCTTATCCCGTTTCGGAAAACCCTCGGCCCGCCCCGCCTCTCTCTCTCGTGTCTCCAAGCGAT
CCAGCA---ACGGAAGAGAGGAAGGAAACGAGCACATCCGTTGATCCTAACCAACCAAAC-----------AACCAACCC
CAGCTCGACGCGGGGTTTGGGGGGT-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GAAAACTTGTCGCTCACACAC
ACGGCGGCCGACGGCGACGAGCGGGACGGG-----CCAGCCGCTCTCTCGCCCTCGATTTTGCGTGCGCGCACAGCACAG
CACACAGACAGACACATACAGAGGTGAGGCGCGCCAGGACGGGAATCGCTTGCTTTCCGCTGGACGCAAGCCGTGGCGAG
TTTCGCGGCGATCTGTTCGCTGTTGGCACGCGCTCGCTTCCTTGGTGCATCAAAACCCGGCCAAGACCAAGGCGGTGCAG
CAAGGAAAAGGATGCGAGGATCAGCAGGAATCTTCCAACCATTCCTTTTCTC--TTTTTTGTGAAACAATCATTCATCCA
TCTAT--TCATTCATTCA------G------------------
>SNPs
-----------------------S----------S--------S------------------------------------
----------------------------------------------------S---------------------------
--------S---------S-----------------------------------S-------------------------
-----S--------------S------------------------------------------------S----------
-----------------S--------------------------------------------------------------
-------------------------S-------------------------------------------------S--S-
------S-----------S---S---------------------------------------------------------
----------------------------------S-------SSSSSSSSSSSSSSSSSSS---------------SSS-
S----------------------------S------------SS------------------------------------
-----------------S----------------------------------------SSS-------------------
---S----------------SSS--------------------------------------------------------S
-------------S----------------------------------------------------S------S------
-----------------------------------------------------------S--------------------
----------------------------------------------------------------S---------------
-------------------S------------------------------------------SS----------SSSS--
-----------------------------S-------------------------------------SSSSSS-------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S------S----------------
---S-----------S----------------------------------------------------------------
------------------------------------S-------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------------S-S-----------------------------------SSS---
-------------------S--------------------S-----------------S----------------S----
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S-S------
-----------------------S--------------------------------------------S-----------
--------------SSSS--------------S-------------------------------------------SSSS
SSSS---------------------------------------------------------------SS-----------
--------------------------------------------------------------------------------
------------------------------------------------S----------SS-------------------
--------------------------------------------------------------S-----------------
----------S------S-----------------S--------------------------------------------
--------------------------------------------------------------------------------
------SS------------------------------------------------------------------------
-----------------------------------------------------------S-SS--S--------------
----------------------------------------------------------S---------------------
------SSS---------------------------------------------------SSSSSSSSSSS---------
S---------------S------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------------------------------------------------------------------S
-----------S------S----------------------------------------S----------SS--------
--------------------------------------------S--------------------------S--------
---------------------------------------------------SSS------------S-------------
-----SS-------------------------S----------
>forward_169
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGATGCTCATC
GCTTTTGGC-----------------------------------------------------------------------
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>reverse_2033
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--------------------------------GGGCTTCATCACTGACTTCCT---------------------------
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>forward_1836
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--------------------------------------------------------CGCCAAGGTTTGCTTTCGAT----
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>reverse_3343
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--------------------------------------------------------------CCTCTACAAGCTGCAGCC
TT------------------------------------------------------------------------------
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