>input_sequence_46315
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--------------------------------------------------------ATGGGAATGGCCGCCGCCG---CC
ACCGCCCCGTCCACGTCGCGCCTCCTCCATCACCGCCACGCCACCTCCGGCTCCAAGCGCCACAGCCACCACCACCACCA
GCAGCGGCTCAGGCACGCCCCCAATCCGTCCCCACTCGCTCTGCGCCGCCGCCTTTCGCCGCCAGCCGGGGCGGCGCTCC
TGCCGGACCGCGTGACCCCGTTCTCCTACGGGGCGGACGACGAATCCGACGACCACCCGCGCGAGGAGTGCGGCCTGGTG
GGGGTCGTGGGCCACCCGGACGCCTCCTCGCTCTGCTACCTGGGCCTGCAGAAACTGCAGCACCGCGGGGAGGAGGGCGC
CGGGATCGTCGCCGCCGGGGGCGACGGCAAGCTCAAGTCGGTGACCGGGCTGGGGCTCGTCGCCGACGTGTTCGGCGACC
CGTCCAGGCTCGCCTCGCTCCCCGGCCCCGCCGCCATCGGGCACGTGCGCTACTCCACCGCCGGCGCCGCCGCGTCCCTG
CGGAACGTGCAGCCGTTCCTGGCGGGCTACAGGTTCGGTCAGGTCGCCGTGGCGCACAACGGCAACCTCGTCAACTACCA
GGCGCTGCGGAGCAAGCTGGAGGCGCGCGGCTCCATCTTCAACACCACCTCCGACACGGAGGTCATCCTCCACCTCATCT
CCACGTCGCTCTCGCGACCGCTGCTGGCGCGCATCTGCGACGCCTGCGAGCGCCTCGCGGGGGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTGTTCGCCGTGCGCGACCCGCACGGGTTCCGCCCGCTGGTGCTCGGCCGCCTCCCCAACGGCGC
CGTCGCCTTCGCGTCCGAGACCTGCGCGCTGGACCTCATCGACGCCGCCTACGAGCGCGAGGTGGAGCCCGGGGAGGTGG
TCATGGTCGACCGCCGCGACATGTCCGTCTCCTCGGCCTGCCTCGTCCCGCGCCTGCCCCGCCGGGCCTGCGTCTTCGAG
CACATCTACTTCTCCCTCCCCAACTCGGTCGTCTTCTCGCACGACGTCCACGAGCGCCGCACCGCCTTCGGCCGCGCCCT
CGCGGAGGAGTCCCCGGCGCCGGGCGCCGACGTGGTCATCCCTGTTCCCGACTCTGGCTTCTACGCCGCGCTGGGCTTCT
CGCGCGAGTCGGGGCTGGAGTTCCAGCAGGGCCTGATCCGGTGGCACTACAGCGGGCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGGGACCTGGCCGTGAAGCTCAAGTTGGCGCCCGTGCGCGGCGTGATCCGCGGCAAGAGCGTGGTGGTGGTGGA
CGACTCCCTGGTCCGCGGCACCACGTCGAGCAAGATCGTGCGGCTGCTCCGCGACGCCGGCGCGCGCGAGGTGCACATGC
GCATCGCCAGCCCGCCGGTGGTGGGGTCGTGCCTGTACGGCATCGACACGCCGAGCGACGGGGAGCTCATCTCGAACCGG
ATGGACCTGGAGGGCGTGCGCCGCGAGATCGGCAGCGACTCCCTCGCCTTCCTCTCGCTGGACAAGCTGCACGGCATCTA
CGGCGAGGAGGCCGGCGACTACTGCGACGCATGCTTCTCGCGCAAGTACCCCGTGCTGCCCACGCTCCCCGAGCCGGCGG
CCGAGTTCGAGGAGGAGGAGTGA---------------------------------------------------------
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----------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G269300
AGCAACTGCTTTGGTGGTTACTATTTGGCACATTTGGGAGGCGAGGAATGATGTCAGGAACAATGGTGCGGTCCTACATC
CTCATCGTGTGGCCGAAAAAAGTATTGCTTATGTGGAGTTGATTGTGCAGAACTGCTTTTAAAACCGTCAAACCTCATAT
GCATGTCCACCCAAACCCTTTGGTGTCTCGATGGGTTCCGTTGTCAACAGACACAATGTTCGTAAATGTTGATAATGCAC
CATTTCAGAATTCGCGACGGATGGGAGTGGGCGTGGTGATTTGAAACCACAGC-GATTGTGCTTGTTGGCATGTCACGAG
CGCATTGAGGAGGTTAGCATGCTAGAACTAGCTGAGGCACTAGCGCTTCGACACGCCGTTGCTCTCACTCGTCCAGAAGG
TTTTCATAAGGTCATCTTCTTCACTTCAGACAGTCTTTCGGTTGTCCAGAGAGTTCTCTATCAAACAATAGAC----CGT
AGTAGTCACCAGCATCAGGATTTTGGCGGGGCAATTTTCCGTCTTGTTCTTTAGTCATTGTTAGCCATTTGTTGAATGTG
GGCGGTTCATATATGCATTTGTGTTTTTCTTCCGGTGATTCTACTTTGTGCAATGTAACTCCGGTTTGCATCTGAAAAAC
TCTCTTTAACAATATTTTGTGGTGAATAAAAGAGTGGTATATTTATTTATTCTCAAAAAGAACAAAGC-AAAAAAGAAAC
TTGGTCCTC-AAGTGGATGAATTAGAAAATGGACCATACGGCGCCACTTGACCCGCGATTGCTTCACTGGTCCAACTCCA
ACGCTCTCGAGTGCTCGATACTCGACACCTCAGT--------------------CCCCACCACTCAGTATCAGGTT----
---------------------------------------------------------------GTACATCGCATCCTACG
GCGGACACGAGCCGACC--AAACCCCTTTAAAATCCCGCCCCTTGACCCGCACTCGGAGGGGCATCCCCCCAAAGCCCTC
GCCGCCGCCGCCGCCGCCGCCGCCAGCAATCCCCTCCCCCCATCAGCCGCCCAAGAATGGGAATGGCCGCCGCCG---CC
ACCGCCCCGTCCACGTCGCGCCTCCTCCATCACCGCCACGCCACCTCCGGCTCCAAGCGCCACAGCCACCACCACCACCA
GCAGCGGCTCAGGCACGCCCCCAATCCGTCCCCACTCGCTCTGCGCCGCCGCCTTTCGCCGCCAGCCGGGGCGGCGCTCC
TGCCGGACCGCGTGACCCCGTTCTCCTACGGGGCGGACGACGAATCCGACGACCACCCGCGCGAGGAGTGCGGCCTGGTG
GGGGTCGTGGGCCACCCGGACGCCTCCTCGCTCTGCTACCTGGGCCTGCAGAAACTGCAGCACCGCGGGGAGGAGGGCGC
CGGGATCGTCGCCGCCGGGGGCGACGGCAAGCTCAAGTCGGTGACCGGGCTGGGGCTCGTCGCCGACGTGTTCGGCGACC
CGTCCAGGCTCGCCTCGCTCCCCGGCCCCGCCGCCATCGGGCACGTGCGCTACTCCACCGCCGGCGCCGCCGCGTCCCTG
CGGAACGTGCAGCCGTTCCTGGCGGGCTACAGGTTCGGTCAGGTCGCCGTGGCGCACAACGGCAACCTCGTCAACTACCA
GGCGCTGCGGAGCAAGCTGGAGGCGCGCGGCTCCATCTTCAACACCACCTCCGACACGGAGGTCATCCTCCACCTCATCT
CCACGTCGCTCTCGCGACCGCTGCTGGCGCGCATCTGCGACGCCTGCGAGCGCCTCGCGGGGGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTGTTCGCCGTGCGCGACCCGCACGGGTTCCGCCCGCTGGTGCTCGGCCGCCTCCCCAACGGCGC
CGTCGCCTTCGCGTCCGAGACCTGCGCGCTGGACCTCATCGACGCCGCCTACGAGCGCGAGGTGGAGCCCGGGGAGGTGG
TCATGGTCGACCGCCGCGACATGTCCGTCTCCTCGGCCTGCCTCGTCCCGCGCCTGCCCCGCCGGGCCTGCGTCTTCGAG
CACATCTACTTCTCCCTCCCCAACTCGGTCGTCTTCTCGCACGACGTCCACGAGCGCCGCACCGCCTTCGGCCGCGCCCT
CGCGGAGGAGTCCCCGGCGCCGGGCGCCGACGTGGTCATCCCTGTTCCCGACTCTGGCTTCTACGCCGCGCTGGGCTTCT
CGCGCGAGTCGGGGCTGGAGTTCCAGCAGGGCCTGATCCGGTGGCACTACAGCGGGCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGGGACCTGGCCGTGAAGCTCAAGTTGGCGCCCGTGCGCGGCGTGATCCGCGGCAAGAGCGTGGTGGTGGTGGA
CGACTCCCTGGTCCGCGGCACCACGTCGAGCAAGATCGTGCGGCTGCTCCGCGACGCCGGCGCGCGCGAGGTGCACATGC
GCATCGCCAGCCCGCCGGTGGTGGGGTCGTGCCTGTACGGCATCGACACGCCGAGCGACGGGGAGCTCATCTCGAACCGG
ATGGACCTGGAGGGCGTGCGCCGCGAGATCGGCAGCGACTCCCTCGCCTTCCTCTCGCTGGACAAGCTGCACGGCATCTA
CGGCGAGGAGGCCGGCGACTACTGCGACGCATGCTTCTCGCGCAAGTACCCCGTGCTGCCCACGCTCCCCGAGCCGGCGG
CCGAGTTCGAGGAGGAGGAGTGACC-----GGTGAGCTCTG------CTCTGCCCAGCTCCTCTGCAT----CAGCTGTA
ACGTTAGTTATTCTGCTTGCGAATTTTCTTAGATCATCAATGAGGGAGCCGGAGCCCCTC-----CATTGCTCGACTGAA
ACCTGGGCATGCTTGCGAATTTTGTATGCCTGCAACATCATTTGGCCATGAATTCTATCCCTGGTGCAGAAGTTAAGTTG
CTGCAATGGTTGACGTTCGATTAAACCTCTCCAACCCCCGGGAAAGCATGACTGGGCAGGCCTGA------CGAAGATGG
CCAAAGTTTGCCAA---------------------------CACTGAATCCACCTTGTGAAACACCCAGTTAAAGGCATC
TATCTAAATTGCCAAGCAAGCACGTGGAACACTTTCAGCAAACTTTTCTGAAACGGGTCGCGAAAGCGACAACTAAACTT
TTCTAAACTTATCTAAATATTCA----------------------------GCTACGACTCATCTAAACTTTTCTGAATA
TTCAGCTACGACTTTGAACTGCAAAGTCGGTGCTAAAACCCAAGAGTCAAGAATTCAGGATGGATGAATCTATTTTGTTC
AGTCAAGTTTTCTATATGCTTCGGTACTTGCAGTTATCGCTATGCGCCCATGTTCTCGGACTGGCCGTGCTCT-------
-GAAGAAGAGCAATGCCGTGTCCAAGTGTGTCTGTGCTTCCCTAGTACTGTAAGCTCATAGCAATATTAGA---AGTAAA
AGTAAAACTGAAACGTTACTGCTG-GAAGAATCAGCACATGAATAGTGGAACTGCCAGCATTGAATAGTGGAACTGCCAG
CATAGAACTTACTCACATAATTCGTCGACCAATGTGTCAATGAACACTGACAGTCTTCCTTTTGTAAACGTAAGAAGCTG
AGAAGTAGAGGAAAGCGAGAAGCTCCAGCGCGGTGAGCGCAGCGATGAGCAGATAGAAGTAGTCGAGATGACCCCGGTTG
AGGTTGTCGGCGATCCAGCTCGTCCCTCCGCCCCTCCTCGTCGCGCCGTCGATGACCGAGATGAGGAAGCTGCTGA
>chr1B_72
-----------------------------------------------------------------------TCCTACGTC
CTCGTCGTGTGGCCGAGAAAAGTATTGCTTATGTGGAGTTGATTGTGTAGAACTGCTTA-AAAACCGTTGAAGCTAATAG
GCATATCCACCCAAATCCTACGGTGTCTCGATGGGTTGCATTGCCAACAGATATGACGTTCGTAAATGTTGATGATGCAC
TGTTTCAGAATTCGCGGTAGATGAGGGTGGGTGTGGTGATCTGGAACCACAACGGATTGTGCTTGTTGGCGTGCCATGAG
CGCATTCAGGAGGTTACCATGCCAGAACTAGCTGAGGCACGTCGCTGCTCTTG--------------CTCGTCAAGAAGG
TTTTCGTAAGGTCATCTCCTTCACTTC-----------------------------------AAACGGCAGACTGTTCGT
AGTAGTCATCAACATCAAGATTTTGAC-GGGCAATTTTCCGTCTTGTTTCTTTAGTCATGTTAGTCGTTTGTCGAATGTC
-GCGGCTCATATATGCATTTGTGTTTTTCTTCGGATGATTTTATTTTGCGTAACGTAACTCCGGATTGCATCTGAAAAAC
TCTCTTTAACAATATTTTTTGATGAATAAAGAGTGG-----------TATTCTCTAAACCAAAAAGCAAAAAAAAAAAAC
TTGGTCCTC-AAGTGGATGAATTAGAAAATGGACCATACGGCGGCACTTGACCAGCGATTGCTTCACTGGTCCAACTCCA
ACGCTCTCGAGTGCTCGATAGTCGACACCTCACTCGGCTCGTTGGTGGCCCCGGCCCCACCACTCAGTATCTTTGCCTGA
AACAACGGAGGTAGGATACCATCACCGTATCAGGTTGTACAACGTACTACGGTACTACCGACGATACATCGCATCCTACG
GTGGATACGAGCCGACC--AAACCTCTTTAAAATCCCGCCCCTTGACCCGCACTCGGAGGGGCATCCCCCCAAAGCCCT-
-----CGCCGCCGCCGCCGCCGCCAGCAATCCCCTCCCCCAAT----CGCCCAAGAATGGGAATGGCCGCCGCCACCACC
ACCGCTCCGTCCACGTCGCGCCTCCTCTATCACCACCACACCACATCCGGCTCCAAGCGCCACACCCACC---ACCACCA
GCAGCGGCTCAGGTACGCCCCCAATCCGTCCCCTCTCGCTCTGCGCCGCCGCCTTTCGCCGCCAGCCGGGGCGGCGCTCC
TGCCGGACCGCGTGACCCCGTTCTCCTACGGGGCGGACGACGAATCCGACGACCACCCGCGCGAGGAGTGCGGCCTGGTG
GGGGTCGTGGGCCACCCGGACGCCTCCTCGCTCTGCTACCTGGGCCTGCAGAAGCTGCAGCACCGCGGGGAGGAGGGCGC
CGGGATCGTCGCCGCCGGGGGGGACGGCAAGCTCAAGTCCGTGACCGGGCTGGGGCTCGTCGCCGACGTCTTCGGCGACC
CGTCCAGGCTCGCGTCGCTGCCCGGGCCCGCCGCCATCGGGCACGTGCGCTACTCCACCGCCGGCGCCGCCGCGTCCCTC
CGGAACGTGCAGCCGTTCCTGGCCGGGTACAGGTTCGGGCAGGTCGCCGTGGCGCACAACGGCAACCTCGTCAACTACCA
GGCGCTGCGGAGCAAGCTGGAGGCGCGGGGCTCCATCTTCAACACCACCTCCGACACGGAGGTCATCCTCCACCTCATCT
CCACGTCGCTCTCGCGGCCGCTGCTGGCGCGCATCTGCGACGCCTGCGAGCGCCTCGCGGGGGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTGTTCGCCGTGCGCGACCCGCACGGGTTCCGCCCGCTGGTGCTCGGCCGCCTCCCCAACGGCGC
CGTGGCCTTCGCGTCCGAGACCTGCGCGCTGGACCTCATCGACGCCACCTACGAGCGCGAGGTGGAGCCCGGGGAGGTGG
TCATGGTCGACCGCCGCGACATGTCCGTCTCCTCGGCCTGCCTCGTCCCGCACCTGCCCCGCCGGGCCTGCGTCTTCGAG
CACATCTACTTCTCCCTCCCCAACTCGGTCGTCTTCTCGCACGACGTCCACGAGCGCCGCACGGCCTTCGGCCGCGCCCT
CGCCGAGGAGTCCCCGGCGCCGGGCGCCGACGTGGTCATCCCGGTGCCGGACTCGGGCTTCTACGCCGCGCTGGGCTTCT
CGCGCGAGTCGGGGCTGGAGTTCCAGCAGGGCCTGATCCGGTGGCACTACAGCGGGCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGCGACCTGGCCGTGAAGCTCAAGCTGGCGCCCGTGCGCGGCGTGATCCGCGGCAAGAGCGTGGTGGTGGTGGA
CGACTCCCTGGTCCGGGGCACCACGTCGAGCAAGATCGTGCGGCTGCTCCGCGACGCCGGCGCCCGCGAGGTGCACATGC
GCATCGCCAGCCCGCCGGTGGTGGGGTCGTGCCTGTACGGCATCGACACGCCGAGCGACGGGGAGCTGATCTCGAACCGG
ATGGACCTGGAGGGCGTGCGGCGGGAGATCGGCAGCGACTCCCTCGCCTTCCTCTCGCTGGACAAGCTGCACGGCATCTA
CGGCGAGGAGGCGGGCGACTACTGCGACGCGTGCTTCTCGCGCAAGTACCCCGTGCTGCCCACGCTCCCCGAGCCGGCCG
CCGAATTCGACGAGGAGGAGTGACCC-----GTGAGCTCTG------CTCTGCCCAGCTCCTCTGCATGCATCAGCTGTA
GCT----TTATTCTGCTTGCGAATTTTCTTAGATCGTCAATCAGGGAGCCGGAGCCCCTCGGTTCCATTGCTTGAATGAA
AA--------------------------CCTGCAACATCATTTGGTCATGAATTCTATCCCTGGTGTAGAAGTTAAGTTG
CTGCAATGGTTGACTTTCGGTTAAACCTCTCGAA--CCCGGGAAAGCATAACTTTGTACTAGGTCTCATGGCGAAGATGG
CCAAAGTTTGCCATCACTGTAACATGCCAGTACAGTTGAATCACTGAATCCACTTTGTGAAACACCCAGTTAAAGGCATC
TAAATTA----CCAAGCAAGCACGTGGAACACTTTCAGCAAACTTTTCTGAAAAAGGTCGCAAAGGCTACAACTAGATTT
TTCTAAACTTATCTTAATATTCA----------------------------GCTACGACTCATCTAAACTTTTCTGAATA
TTCAGCTCCGACTTTGAACTGTAAAGTTGGTGCTAAAACCCAAGAATCAAGAATTAAGGACGGATGAATCTATCTTGTTC
AGTCAAGGTTTTTATATGCTTCGGTACTTGCAGTTATGACTGTGCGCCCATGTTCTCAGGCTGGCCGTGCTCT-------
-GAAGAAGAGCAATGCCGTGTTCAAGTGTGTCGGTGCTTCAGGATTAA--TAAGTTCACAGCAATAGTAATAAGAGTAAA
AGTAAAACTGAAACATTGCTGCCCAGAAGAATCAGCACATGAGTAGTGGAATTGTCAGCATACAACTTCGCTGT------
--------------ACATAATTCATCGACCATTGTGTCAATGAACACTGCCAGTCTTCCTTTTGTAAACGTAAGAAGCTG
AGAAGTAGAGGAAAGCAAGAAGCTCCAGCGCGGTGAGCGCAGCGATGAGCAGATAGAAGTAGTCAAGGTGACCCCGGTTG
AGGTTGTCGGCGATCCAGCTCGTCCCTCCGCCCCACCTCGTCACGCCGTCGATGACCGAGATGAGGAAGCTGCTGA
>chr1D_389
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---------------------------------------------------------------------CGTCAAGAAGG
TTTTCATAAGGTCAACTCCTTCACTTGAGACTGTCTTTCCGTTGTCCAGAGAGTTCTCTCTCAAACGACTGACTGTTCGT
AGTAGTCACCGACATCAAGATTTTGAC-GAGCAATTTTTTGTCTTGTTCTTTAGTCATTGTTAGCCATTTGTCGAATGTG
GGCGGCTCATATATGCATTTGTGATTTTCTTCCAGTGATTCTATTTTGCGCAATGTAACTCTGGGTTGCATCTGAAAAAC
TCTCTTTAACAATATTTTGTGTTGAATAAAGAGTGGTG-----TATTTATTCTCTAAAAGAA---------AAGAAAAAC
TTGGTCCTCAAAGTGGATGAATTAGAAAATGGACCATACGGCGCCACTTGACCCGCGATTGCTTCACTGGTCCAACTCCA
ACGCTCTCGAGTGCTCGATAGTCGACACCTCAGTCGGCTCGTTGGTGGCCCC------ACCACTCAGTATCTCTGCCTGA
AAGCACGGAGG-----TACCATCACCGTATCAGGTTTGTACAACG--TACGGTACTACCGACGGTACATCGCATCCTACG
GCGGACAAGAGCCGACCAAAAACCTCTTTAAAATCCCGCCCCTTGACCCGCACTCGGAGGGGCATCCCCCCAAAGCCCT-
-----CGCCGCCGCCGCCGCCGCCAGCAATCCCCTCCCCA-ATCAGCCGTCCAAGAATGGGAATGGCCGCCGCCGCCGCC
GCC---CCGTCCACGTCGCGCCTCCTCCATCCCCACCACACCACCTCCGCCTCCAAGCGCCACAACCAAC---ACCAGCA
GCAGCGACTCAGGTACGCCCCCAATCCGTCCCCTCTCGCTCTGCGCCGCCGCCTTTCGCCGCCAGCCGGGGCGGCGCTCC
TGCCGGACCGCGTGACCCCGTTCTCCTACGGGGCGGACGACGAATCCGACGACCACCCGCGCGAGGAGTGCGGCCTGGTG
GGGGTCGTGGGCCACCCGGACGCCTCCTCGCTCTGCTACCTGGGCCTGCAGAAGCTGCAGCACCGCGGGGAGGAGGGCGC
CGGGATCGTCGCCGCCGGGGGCGACGGCAAGCTCAAGTCCGTGACCGGGCTGGGGCTCGTCGCCGACGTCTTCGGCGACC
CGTCCAGGCTCGCCTCGCTGCCCGGACCCGCCGCCATCGGGCACGTGCGCTACTCCACCGCCGGCGCCGCCGCGTCCCTG
CGGAACGTGCAGCCGTTCCTGGCGGGCTACAGGTTCGGGCAGGTGGCCGTGGCGCACAACGGCAACCTCGTCAACTACCA
GGCGCTGCGGAGCAAGCTGGAGGCGCGGGGCTCCATCTTCAACACCACCTCCGACACGGAGGTCATCCTCCACCTCATCT
CCACGTCGCTCTCGCGGCCGCTGCTGGCGCGCATCTGCGACGCCTGCGAGCGCCTCGCGGGGGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTGTTCGCCGTGCGCGACCCGCACGGGTTCCGCCCGCTGGTGCTCGGCCGCCTCCCCAACGGCGC
CGTGGCCTTCGCGTCCGAGACCTGCGCGCTGGACCTCATCGACGCCGCATACGAGCGCGAGGTGGAGCCCGGGGAGGTGG
TCATGGTCGACCGCCGCGACATGTCCGTCTCCTCGGCCTGCCTCGTCCCGCGCCTCCCGCGCCGGGCCTGCGTCTTCGAG
CACATCTACTTCTCCCTCCCCAACTCGGTCGTCTTCTCGCACGACGTCCATGAGCGCCGCACCGCCTTCGGCCGCGCCCT
CGCGGAGGAGTCCCCCGCGCCGGGCGCCGACGTGGTCATCCCGGTTCCCGACTCGGGCTTCTACGCCGCGCTCGGCTTCT
CGCGGGAGTCGGGGCTGGAGTTCCAGCAGGGCCTGATCCGGTGGCACTACAGCGGGCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGCGACCTGGCCGTGAAGCTCAAGCTGGCGCCCGTGCGTGGCGTGATCCGCGGCAAGAGCGTGGTGGTGGTGGA
CGACTCCCTGGTCCGGGGCACCACGTCGAGCAAGATCGTGCGCCTGCTCCGCGACGCCGGCGCGCGCGAGGTGCACATGC
GCATCGCCAGCCCGCCGGTGGTGGGGTCGTGCCTGTACGGCATCGACACGCCGAGCGACGGCGAGCTCATCTCGAACCGG
ATGGACCTGGAGGGCGTGCGGCGGGAGATCGGCAGCGACTCCCTCGCCTTCCTCTCGCTGGACAAGCTGCACGGCATCTA
CGGCGAGGAGGCGGGCGACTACTGCGACGCCTGCTTCTCGCGCAAGTACCCCGTGCTGCCCACGCTCCCCGAGCCGGCGG
CCGAATTCGACGAGGAGTGACCGGTGAGCAGGTGAGCTCTGCTCTGCCTCTGCCCAGCTCCTCTGCAT----CAGCTGTA
ACG----TTATTCTGCTTGCGAATTTTCTTAGATCATCAATCAGGGAGCCGGAGC----------------TTGAATGAA
ACCTGAGTAGGCTTGCGAATTTTGTATGCCTGCAACATCATTTGGTCATGAATTATATCCCTGGTGTAGAAGTTAAGTTG
CTGCAATGGTTGACATTCGATTAAACCTCTCGAACCCCCGGGAAAGCATAACTTTGTAGGAG---------------TGG
CCAAAGTTTGCCATCACTG---------------------------AATCCACTTTGTGAAACACCCAGTTAAAGGCATC
TAAATTA----CCAAGCAAGCACGTGGAACACTTTCAGCATACTTTTCTGAAT-----------------------ATTT
TGCTGAACTTTTCTGAATATTCAAAAAGTTCAGCTACAATCTGAATATTCAGCTACGACTCATCTAAACTTTTCTGAATA
TTCAGCTACGACTTTGAACTGTAAAGTTGGTGCTAAAACCCAAGAATCAAGATTTTAGGATGGATGAATCTATCTTGTTC
ACTCAAGTTTTTTATACGCTTCGGTACTTGCAGTTATCGCTATGCGCCCATGTTCTCAGACTGGCTAGTCCGAACTCTGA
AGAAGGGGAGCAATGCCGTGTTCAAGTGTGTCTGTGCTCCCGTA-TAA--TAAGCTCATAGCAATAGTAAAA--AGTAAA
AGTAAAACCGAAACATTGCTGCCG-GCAGAATCAGCACATGAACAGTGGAATTGCCAGCATACAACTTACCA--------
-------------CACATAATTCGTCGGCCAATGTGTCAATGAACACTGACAGCCTTTCTTTTGTAAACGTAAGAACCTG
AGAAGTAAAGGAAAGCAAGAAGCTCCAGCGCGGTGAGCGCAGCGATGAGCACATAGAAGTAGTCGAGATGACCCCGGTTG
AGGTTGTCGGCGATCCAGCTCGTCCCTCCGCCCCTCCTCGTCGCGCCGTCGATGGCCGAGATGAGGAAGCTGCTGA
>chr3D_1209
ACGGCGA-------------------------------------------------------------------------
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----------------------------------GGAGGACGACGGCGACGACCACCCCCGCGAGGAGTGCGGCGTGTTC
GGCGTCGTGGGGGACCCGGAGGCGTCGTCGCTCTGCTATCTCGGCCTGCAGAAGCTGCAGCACCGCGGGGAGGAGGGCGC
CGGCATCTGCGCCGCCGGGGACGACGGCAAGCTCAAGTCCGTGACGGGGCTGGGGCTCGTCAGCGACGTGTTCCGGGACC
CGGCGCACCTCGGGAGCCTCCCCGGGAAGGCCGCCATCGGCCACGTCCGCTACTCCACCTCCGGCGGCCAGGCCCAGCTG
TGCAACGTGCAGCCGTTCCTCGCCGGGTACCGGTTCGGGCAGCTCGCAGTGGCGCACAACGGCAACCTGGTGAACTACCT
GCCGCTGCGCCACAAGCTGGAGGCGCAGGGCTCCATCTTCAACAACTCGTCGGACACGGAGGTCATCCTCCACCTCATCG
CCACGTCGCTCTCGCGCCCGCTGCTCGCCCGCATCTGCGACGCATGCGAGCGCCTCCAGGGCGCCTACTCGCTGCTGTTC
CTCACGGCCGACAAGCTCTTCGCCGTGCGCGACCCCTTCGGCTTCCGCCCGCTGGTCATGGGCCGCCGCCCCAACGGCGC
CGTCGTGTTCGCGTCGGAGACCTGCGCGCTCGACCTCATCGACGCCGTGTACGAGCGGGAGGTGGAGCCCGGGGAGGTGA
TCGTCGTGGACCGCCGGGACATGTCCGTGTCCTCTGCCTGCCTCGTCCCGCACCGCCCGCGCAAGTCGTGCGTGTTCGAG
CACATCTACTTCGCGCTGCCCAACTCTATCGTGTTCGGGCACGCAGTGCACGAGCGGCGCACCGCCTACGGCCGCGCGCT
GGCCGAGGAGTCCCCGGCCCCCACCGCCGACGTGGTCATCCCCGTGCCGGACTCTGGCTTCTACGCGGCGCTCGGCTTCG
CACAGGCCTCGGGGCTCGAGTTCCAGCAGGGGCTCATCCGGTCGCATTACACGGGCCGCAGCTTCATCCAGCCGACGCAG
GCCATCCGCGACCTCGCCGTGAAGCTCAAGCTCGCGCCCGTGCGGGGCGTCATCACGGGCAAGAGCGTGGTGGTCGTGGA
CGACTCGATCGTGCGCGGCACCACGTCGAGCAAGATCGTGCGCCTGCTCCGCGACGCCGGGGCGCGCGAGGTGCACATGC
GCATCTCCAGCCCCCCGGTGGTCGGCCGGTGCCACTACGGCATCGACACGCCCGACGAGAAGGAGCTGATATCCAACAGG
CTGGACGTCGAGGGCGTGCGCGAGATGATCGGCTGCGACTCGCTCGGCTTCCTGACGCTGGACAAGCTCCACAGCATCTA
CGGCGACGAGGCGGACGAGCTCTGCGACGCCTGCTTCTCGCGGAACTACCCGGTGC------------------------
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----------------------------------------------------------------------------
>chr3A_1228
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----------------------------------------------CGACGACCACCCCCGCGAGGAGTGCGGCGTGTTC
GGCGTCGTGGGCGACCCGGAGGCGTCGTCGCTCTGCTATCTCGGCCTGCAGAAGCTGCAGCATCGCGGGGAGGAGGGCGC
CGGCATCTGCGCCGCCGGGGACGACGGCAAGCTCAAGTCCGTGACGGGGCTGGGGCTCGTCAGCGACGTGTTCAGGGACC
CGGCGCACCTCGGGAGCCTCCCCGGGCAGGCCGCCATCGGCCACGTCCGCTACTCCACCTCCGGCGGCCAGGCCCAGCTG
TGCAACGTGCAGCCGTTCCTCGCCGGGTACCGGTTCGGGCAGCTCGCCGTGGCGCACAACGGCAACCTGGTGAACTACCT
GCCGCTGCGCCACAAGCTGGAGGCGCAGGGCTCCATCTTCAACAACTCGTCGGACACGGAGGTCATCCTCCACCTCATCG
CCACGTCGCTCTCGCGCCCGCTGCTTGCCCGCATCTGCGACGCCTGCGAGCGCCTCCAGGGCGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTCTTCGCCGTGCGCGACCCCTTCGGCTTCCGCCCGCTGGTCATGGGCCGCCGCCCCAACGGCGC
CGTCGTGTTCGCGTCGGAGACCTGCGCGCTCGACCTCATCGACGCCGTGTACGAGCGGGAGGTGGAGCCCGGGGAGGTGA
TCGTCGTGGACCGCCGGGACATGTCCGTGTCCTCGGCCTGCCTCGTCCCGCACCGCCCGCGCAAGTCGTGCGTGTTCGAG
CACATTTACTTCGCGCTGCCCAATTCCATCGTGTTCGGGCACGCCGTCCACGAGCGGCGCACCGCCTACGGCCGCGCGCT
GGCCGAGGAGTCCCCCGCCCCGACCGCCGACGTGGTCATCCCCGTGCCGGACTCTGGCTTCTACGCGGCGCTCGGCTTCG
CGCAGGCCTCGGGGCTCGAGTTCCAGCAGGGGCTCATCCGGTCGCATTACACCGGCCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGCGACCTCGCCGTGAAGCTCAAGCTCGCGCCCGTGCGCGGCGTCATCACGGGCAAGAGCGTGGTCGTGGTCGA
CGACTCGATCGTGCGCGGCACCACGTCGAGCAAGATCGTGCGCCTGCTCCGCGACGCCGGGGCCCGCGAGGTGCACATGC
GCATCTCCAGCCCGCCGGTGGTGGGCCGATGCCACTACGGCATCGACACGCCGGACGAGAAGGAGCTGATATCCAACCGG
CTGGACGTCGAGGGCGTGCGCGAGATGATCGGCTGCGACTCGCTCGGCTTCCTTTCGCTGGACAAGCTCCACAGCATCTA
CGGCGACGAGGCGGACGAGCTCTGCGACGCCTGCTTCTCGCGGAACTACCCAGTGC------------------------
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----------------------------------------------------------------------------
>chr3B_1228
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----------------------------------------------CGATGACCACCCCCGCGAGGAGTGCGGCGTGTTC
GGCGTCGTGGGCGACCCGGAGGCCTCGTCGCTGTGCTACCTGGGCCTGCAGAAGCTGCAGCACCGCGGGGAGGAAGGCGC
CGGCATCTGCGCCGCCGGGGACGACGGCAAGCTCAAGTCCGTGACGGGGCTGGGGCTCGTCAGCGACGTCTTCAGGGACC
CGGCGCACCTCGGGAGCCTCCCCGGGCAGGCCGCCATCGGCCACGTCCGCTACTCCACCTCAGGCGGCGACGCCCAGCTG
TGCAACGTGCAGCCGTTCCTCGCCGGGTACCGGTTCGGGCAGCTCGCGGTGGCGCACAACGGCAACCTGGTGAACTACCT
GCCGCTGCGCCACAAGCTGGAGGCGCAGGGCTCCATCTTCAACAACTCGTCGGACACGGAGGTCATCCTCCACCTCATCG
CCACGTCGCTCTCGCGCCCGCTGCTCGCCCGAATCTGCGACGCCTGCGAGCGCCTCCAGGGCGCCTACTCGCTGCTCTTC
CTCACGGCCGACAAGCTCTTCGCCGTGCGCGACCCGTTCGGCTTCCGCCCGCTGGTCATGGGCCGCCGCCCCAACGGCGC
CGTCGTGTTCGCGTCGGAGACCTGCGCGCTGGACCTCATCGACGCCGTGTACGAGCGAGAGGTGGAGCCCGGGGAGGTGA
TCGTCGTCGACCGCCGGGATATGTCCGTGTCCTCGGCTTGCCTCGTCCCGCACCGCCCGCGCAAGTCGTGCGTGTTCGAG
CACATCTACTTCGCGCTGCCCAACTCCATCGTGTTCGGGCACGCAGTCCACGAGCGGCGCACCGCCTACGGCCGTGCGCT
CGCCGAGGAGTCCCCCGCCCCAACCGCCGACGTGGTCATCCCCGTGCCGGACTCTGGCTTCTACGCGGCGCTCGGCTTCG
CGCAGGCCTCGGGGCTCGAGTTCCAGCAGGGCCTCATCCGGTCGCATTACACGGGCCGCAGCTTCATCCAGCCGACGCAG
GCGATCCGCGACCTCGCCGTCAAGCTCAAGCTCGCGCCGGTGCGCGGCGTCATCACGGGCAAGAGCGTGGTGGTCGTGGA
CGACTCGATAGTGCGCGGCACCACGTCGAGCAAGATCGTGCGCCTGCTCCGCGACGCCGGGGCGCGCGAGGTGCACATGC
GCATCTCCAGTCCGCCGGTCGTCGGCCGGTGCCACTACGGCATCGACACGCCCGACGAGAAGGAGCTGATATCCAACAGG
CTGGACATCGAGGGCGTGCGCGAGATGATCGGCTGCGACTCGCTCGGCTTCCTGACGCTGGACAAGCTGCACAGCATCTA
CGGCGACGAGGCGGACGAGCTCTGCGACGCCTGCTTCTCGCGGAACTACCCGGTGC------------------------
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----------------------------------------------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--
---S------------S------------------------------S----------SS--------SS--S--S---S
----S----------S---SS----------------S-S---S-------S-SS-S----------------S------
SS--------------SSS----S-S-----S--------S--S-------S------------------S--S--S---
------S---------S-----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------S------
-----------------S-------------S-------S-------------------S------S-S-----------
-----------S-----S-------S-S--------------------------------------------S-------
-----S-------------------------------------S----S---------------S---------------
---------------------S--------SSSSS-SSSSSSS-----------S-------S--SSS-------S----
--------------------------------------------------------------------------------
--------------------S--------------------------------------------------SSSSS----
--------------------------------------------------------------------------------
------------------------S------------------------------------------------------S
SSSSS-----------------------------------S---------------------------------------
-----S----------------------------S----S------------------------S-----SSS-------
-------------S-------------------S----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------S----------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------S----------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------S---------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------S-----------------S-------------------------------------------------
----S-----S---------------------------------------------------------------------
---SSSS----------------------------------S------------------------------S--S----
-----S-S-S-----------------------------------S--------------------S-------------
--------------S----------------S-----------------S---SS-S---SSSSS---------------
-------------S---------------------------------------S--------------------------
--SS-S-SSSS------------------------------------------SS------S--S--S-------S-S--
--------------S-----------------------------------------------------------------
---------------------S-----S-----------------S---------S-----------------S------
-----------S---------------------------------------------S----------------------
---------------------S-------------------S--S--SSS----------------S--S----------
--------------S--S----S----------------------------S---------SS--SSSS-S-SSSSSSSS
SSSSSSSSSSSSS-------------------------------------------------------------------
----------------S---------------------------------------------------------------
----------------------------------------------------------------------------
>forward_204
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------------------------GTCTCGATGGGTTCCGTTGT------------------------------------
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>reverse_1708
--------------------------------------------------------------------------------
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---------------------------CGGCTCCATCTTCAACACCA---------------------------------
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----------------------------------------------------------------------------
>forward_508
--------------------------------------------------------------------------------
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--------CCAGCATCAGGATTTTGGCG----------------------------------------------------
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>reverse_2203
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------------------------------------------TGTTCCCGACTCTGGCTTCT------------------
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----------------------------------------------------------------------------
>forward_874
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------------------------------------------------------CCCCACCACTCAGTATCAGG------
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----------------------------------------------------------------------------
>reverse_2876
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTGAA
ACCTGGGCATGCTTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------
