>input_sequence_46296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATGGGGAGAAGTAAGCACG
CGCTTTACCCTCCCCCTCTCGCCCTTGCGTGTATGTTACTCTAGTCTAGCGTTCATCTGGCC-GTAGCTATGGTTCGTGC
AATCGTTTGAATTGGCGCGGTTGCGTGTGAATCTGGCCTAGATCCGTCGTAGCCGCGCGGAACCTGTGGTATGTGTTACT
CCCGATGTTTATTTAGTTTCTGTCTGGTGGATTTGGCAAGATAAATTCATGCCCGTAGCTGTTCTCATGTGGTGATTCGA
AACAACATTTGAGTAGTTCAAGCTGCGGGT-CATACTCTGTTCGTTTCATTTTAGTGTCTGTTTGTTAAATGGTGCCCGA
AAAATGCTCTAGGCTTCTCGGATGTTGATATTTCCTGTGCTCTTTCATGTACTA---TGCTAGGAAATGAAGATCTGTAT
GCTCTTGCTTTTAAGTTATTCTAAG---------CACTGCTGCTGTTGGTAGGGTTGTATGGCCAATGATATTCTATGAA
GCTGAATGAGTAGTTGTTGTGGCTAGTTGTTGATCAACTT-----------------------GCCAACTGCTCATGTTG
AATCATGGTAGTTAGTAATCTCTTCTTTCCCTGTCAATGGTAACCTATCTTAAATTGAGTCTGATTGTACATGTTGCTCA
TATCTAGAGTTGAATGTGGTGCAAATTAAACTGTTTCATTCTCTGTACCTGGAAAGAAGCAGTGTCTTAACTGAGTTGCA
CATTCTTTTGAATGTTCACTGCAAATTAAAATGTTATTTTGCATGTTTGCTGCTTTTAGTTGTTCTGTTCTGGTAATGAC
--AATTCTCTGGTCAGGACCTGCGAGGTGCTATCGGCAGATCAAGAACAAGCCATACCCCAAGTCAAGGTACTGCCGTGG
TGTGCCTGACCCTAAGATCAGGATCTATGATGTCGGCATGAAGAAGAAGGGTGTCGATGAGTTCTCTCACTGTGTTCACC
TTGTCTCATGGGAGAAGGAGAATGTGTCCAGTGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACTAAG
CATGCAGGAAAGGATGCCTTCCACCTCAGGGTCAGGGTTCACCCGTTCCATGTGCTCCGTATCAACAAGATGCTTTCGTG
TGCCGGGGCTGATAGGCTCCAGACTGGTATGAGGGGTGCTTTCGGGAAGCCGCAGGGAGTCTGTGCCCGTGTTGCCATTG
GGCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCTACTGAGGCCCTTCGTCGTGCCAAGTTCAAG
TTCCCTGGCCGCCAAAAGATCATTGAGAGCAGGAAGTGGTAAGCACTGAAGATTGTTTCATGTGCTGAGATGATAT----
-TCTTGTCAAAATTTCTGTGT-GCCATATCTCTAATTTTGTGCTGCCTCTTTCAGGGGCTTCACCAAGTTCAACCGCAAT
GACTACCTCAAGTTCAAGAGTGAGGGCAGGATCTTGCCTGATGGAGTCAACGCTAAGGTAGATATACTTGATCCTGGGCA
ATTGTTTTGAAGATGAACTTATTTATCCTGCCTTGGTAAACTGTTGTCCCTGCATCATCTAATTGT-TTCATG-TCTGGC
TTTGCAGCTGCTCGGATGCCATGGCCGCCTTGCAAACCGTGCCCCTGGACAAGCTTTCCTGTCTGCTGCATAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr1A_1_TraesCS1A01G112500
TCCAGCAACGACATTTGCTAGTGGAGAAAGGAAGGCAACTCACCTAGGGGCTCGACCATCACCGTGAGGGCATGGGCGAG
AGCTGCTGCCGCCGGCACTGGCGATGATGAAATACTCTAAAATGAATATGGTGTTGCCACAACAATCTTCATCCCCTCCT
TGCAAAGGACGCCCCC-GCCATGCCGGCCAACCACGCTTCATGCTCTGTCCACCACGCCTTGTCCTCACCACTACCTCGC
CGATGGATTCGGAGCCGCCACCACCGCCATGCCCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGGAGAGGA
GTAACTTGAGGGAGAGAAAGCGAGGGACGGGAGTGACGGAGGGAGCGCTCGGGTTGGGCCGCCCCAGTCGCTTCGGACAG
AGCTGTTAATGGCGCGCCGTCGACGTACTCGAACCACGAGGGATCAACCATGTCAAAATGTGCTAAAAAG---GCTCAAT
GTTTTTGTCACCGTCAGATTTTCGGTTCGGTGCGAAATGTCACAAATCGTGAAGTGATAGTTTTCTGCTAATCATGACAC
AAATGTGGTGCTTCTGGGCCTAAACCATTTCCTCCTGGGGCCCAAACTCCC-GGTCACGCATGACGCAAACCAAATGTAG
ACGTCGGCCAGTCCAAGTCCA--ATATATGACACGGGTTAAAGCAAACAGATTTGAGCCGAACGATTGAAAAATCCAACG
GCTAATA-----CTGGGAGTAAAGTGTGGCCCGAATCTTCTGGTGTTTTCTGGGCCTGGACTAATTTCTCCTCAGGCCCA
ATAGCTCCAC--GGTC----ACGCATGACGCAGACCCAATATGGACAGTCCAAGTCCAATAGCACCACCTCCACGCGGAA
ACCCCAGCCAGGACAGCAACCCATTCGCAATCCCCACCTCTATATAAGCGGCCCCGTGGATCCACACCAAACCCTAGTCG
CAGCTCTTCCGTCTCC---CGCCGCCGCCGCAGCCGCCGCCTGCCTCGAGCCGCCGTCGCCATGGGGAGAAGTAAGCACG
CGCTTTACCCTCCCCCTCTCGCCCTTGCGTGTATGTTACTCTAGTCTAGCGTTCATCTGGCC-GTAGCTATGGTTCGTGC
AATCGTTTGAATTGGCGCGGTTGCGTGTGAATCTGGCCTAGATCCGTCGTAGCCGCGCGGAACCTGTGGTATGTGTTACT
CCCGATGTTTATTTAGTTTCTGTCTGGTGGATTTGGCAAGATAAATTCATGCCCGTAGCTGTTCTCATGTGGTGATTCGA
AACAACATTTGAGTAGTTCAAGCTGCGGGT-CATACTCTGTTCGTTTCATTTTAGTGTCTGTTTGTTAAATGGTGCCCGA
AAAATGCTCTAGGCTTCTCGGATGTTGATATTTCCTGTGCTCTTTCATGTACTA---TGCTAGGAAATGAAGATCTGTAT
GCTCTTGCTTTTAAGTTATTCTAAG---------CACTGCTGCTGTTGGTAGGGTTGTATGGCCAATGATATTCTATGAA
GCTGAATGAGTAGTTGTTGTGGCTAGTTGTTGATCAACTT-----------------------GCCAACTGCTCATGTTG
AATCATGGTAGTTAGTAATCTCTTCTTTCCCTGTCAATGGTAACCTATCTTAAATTGAGTCTGATTGTACATGTTGCTCA
TATCTAGAGTTGAATGTGGTGCAAATTAAACTGTTTCATTCTCTGTACCTGGAAAGAAGCAGTGTCTTAACTGAGTTGCA
CATTCTTTTGAATGTTCACTGCAAATTAAAATGTTATTTTGCATGTTTGCTGCTTTTAGTTGTTCTGTTCTGGTAATGAC
--AATTCTCTGGTCAGGACCTGCGAGGTGCTATCGGCAGATCAAGAACAAGCCATACCCCAAGTCAAGGTACTGCCGTGG
TGTGCCTGACCCTAAGATCAGGATCTATGATGTCGGCATGAAGAAGAAGGGTGTCGATGAGTTCTCTCACTGTGTTCACC
TTGTCTCATGGGAGAAGGAGAATGTGTCCAGTGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACTAAG
CATGCAGGAAAGGATGCCTTCCACCTCAGGGTCAGGGTTCACCCGTTCCATGTGCTCCGTATCAACAAGATGCTTTCGTG
TGCCGGGGCTGATAGGCTCCAGACTGGTATGAGGGGTGCTTTCGGGAAGCCGCAGGGAGTCTGTGCCCGTGTTGCCATTG
GGCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCTACTGAGGCCCTTCGTCGTGCCAAGTTCAAG
TTCCCTGGCCGCCAAAAGATCATTGAGAGCAGGAAGTGGTAAGCACTGAAGATTGTTTCATGTGCTGAGATGATAT----
-TCTTGTCAAAATTTCTGTGT-GCCATATCTCTAATTTTGTGCTGCCTCTTTCAGGGGCTTCACCAAGTTCAACCGCAAT
GACTACCTCAAGTTCAAGAGTGAGGGCAGGATCTTGCCTGATGGAGTCAACGCTAAGGTAGATATACTTGATCCTGGGCA
ATTGTTTTGAAGATGAACTTATTTATCCTGCCTTGGTAAACTGTTGTCCCTGCATCATCTAATTGT-TTCATG-TCTGGC
TTTGCAGCTGCTCGGATGCCATGGCCGCCTTGCAAACCGTGCCCCTGGACAAGCTTTCCTGTCTGCTGCATAATCTAGCA
GAAGAAGTCTATCCGTTCTATCGAAACTTATTTTACCGTGTGGAACTTAGATTCCAAGTGCCTGTGGTGCTATGTTATTT
TGTCTGAATGTTGTGTCGAACCTTGTTATGGAAGATATTATCTATTTTGTGATGATGGTACTAATATGAATGGCCTGTTG
AATCATTACTACTTGAATTCGTTTGTCAATGTATTTTGCTGTGGTTGTTGTCCTGTGTTTGAATTTGATGCTTCATTTTG
TGAAGCTACCCAAGGAAAATGTTATACGTTC---ACATGGTTTGAAACATTCTGTGAAGAGTGAAGCAAAATTCTGGCCT
TTGCACCTTATTTTTTTTGTAAGGGTCTTTTTTAAG---CAGTATACAATTTCCGGATGTCT----GGTTAGTGTATCGT
CTGCCGGTCAATTTTGCTGGCGTTTAGTAGAGTAGTACTCCCTCCGTCTGGTGAAGAGTGAACATCTAGAGATTTTAGGA
CAAATTATGGAGTGAAGTAAAAAATAGATTTTAGGATAAATTATGGAGTGAAGTAAAAAATGCATTGGAAAAATGCAAGT
CATCATCTCTCCCCTCTTTAATTAACCAACTTCCAATGAGCTAAGCGCATGTAAAAATTAAGAAGACAATGTGTAGCTTC
TTATTGGTCTTGATTACCGTGTGATGAGAGAGAAGTATTTTTATCTACTTTAAAATGTATTGGGAAGATAGAAGTATACT
TTTTTGTGAACAAATTTTAAAGCCAAACGTTCACTCTTTACCGGACGGAGGGAGTATACACTTTCAGGACGCCTAGTTCG
TTCAGTTGGTTGGTGTTTCGTCTGCTGGTGTCTTTGATGCATCCGAACCGCGTTTCAGTTTCTCTTTTTAAAAATAAAAA
ATAAAAAATTCATGTCAGTTTGCCATTCCATTTCCCCACTTCCTT----GTTTGAAATCCCTAGAATTACCAGTAGGGTG
ATCTGAATTTGGGAGCACAATTGAGAATTGACCAAACATGATATCCC
>chr1D_1
TCCAGCAACCGCATTTGCTAGTGGAGAAAGGAAGGCAGCTCACCTAGGGGCTCGACCACCACCGTGAGGGCGCGGGCGAC
AGCTGTTGCCGTTGTCGCTGGCGACGATGAGATACTTTGAAATGAATATGATATTGCCACAACAATCTTCATCTCCTCCT
CGCAAAGGGCGCCCCCTGCCATACCGGCCAACTACGCTTCATGCTCTATCCACCACGCCTTGTCCTCACCACTACCTCGC
CGATGGATTCGGAGCCGCCACCGCCGCCATGCCCAAAAGAGAG------------------------GAGAGGGAGAGGA
GGAACTCGAGGGAGAGAAAGCGAGGGAGGAGAGTGACGGAGGAAGTGCTCGGGTTGGGCCGGCCCAGTCGCTTCGGATAG
AGCCATTAACGGCGCGCCGTCGACGCACTCGGACCGCGAGGGATCGGCCACGTCAAAACATGCTCAAAAAATTGCTCAAT
GTTTTTGTCATTGTCAGATTTTCGGTTCGGTGCGAAATGTCACAA-TCGTAACGTGATAG-TTTCCGCTAATCATGACAC
GATTGTGGTGCTTCTCGGCCTAAACCATTTTCTTCTGCGGCTCAAACTCCCAGGTCACGCATGACGCAAACCAAATGTGG
ACGTCGGCC-GTCCAAGTCCAAT----------------------AACCGATTTGAGCCGAACGATTGAAAAATCCAACG
GCTAATA-----CTGGTAGTAAAGTGTGGCCCGAATCTTCTAGTGTTTTCTGGGCCTGGACTAATTTCTCCTCAGGCCCA
ACAGCTCCACCGGGTC----ACGCATGACGCAGACCCAATATGGACAGTCCAAGTCCAATAGCACCACCTCCACGCGGAA
ACCCCAGCCAGGACAGCAACCCATTCGCAATCCCCACCTCTATATAAGCGGCCCCGTCGATCCACACCAAACCCTAGCCG
CAGCTCTTCCGTCTCCTCCCGCCGCCGCCGCAGCCGCCGCCTGCCTCGAGCCGCCGTCGCCATGGGGAGAAGTAAGCAAG
CGCTTTACCCTCTCCCTC-----------TGTATGTTACTCTAGTCTAGCGTTCATCTGGCTGGTAGCTATGGTTCGGGC
AATCGTTTGAATTGGCGCGGTTGCGTGTGAATCTGGCCTAGATCCGTCGTAGCCGCGCGGAACCTGTGATATGTGTTGCT
CCCGTTGTTTATTTAGTTTCTGTCTGGATGATTTGGGAGAACAAATTCATGCCCGTAGCTGTTTTCTTGTGGGGATTCGA
AAGAACATTTGAGTAGTACAAGCTTCGGGTTCATCCTCTGTTCG----------------GTTCATATAATGGTGCCAGA
AAAATGCTCTAGGCATCTCAGGTGTTAATATTTCCTGTGCTCTT-CATGTAGTAGTTTGCTAGTAAATGAAGAGATGTAT
GCTCTTGCTTGAAAGTTATTCTAATCACTCTTAACACTGCTGTTGTTGGTATGGTTGTATGGTCAATGATACTCCATGAA
TGTGAATGAGTAGTTGCTGTGGTTACAATGGTATGCGTTCCCTGTTAATAAGTCGTTCAACCCGCCAACTGCTCATTCTG
AATCATGGTAGTTTGTAATCTCTTGTTTGCCTGTCAATGGTAACCTATGTTAAATTGAGTCTGACTCTACATGTTACTCA
TATCTAGTGTTGAATGTGGTGCAAATTAAAATGGTTCATTCTCAGTACCTGGAATGATGCACTGTCTGAACTGAGTTGCA
CATTCTTTTCAATGTTAACTGCATTTAGTTATTTTC-TTTGCATGTTTGCTGCTTTTAGTTGTTTTGTTCTGCGAATGAC
AAAATTCTCTGGTCAGGACCTGCGAGGTGCTATCGGCAGATCAAGAACAAGCCGTACCCCAAGTCAAGGTACTGCCGTGG
TGTGCCTGACCCTAAGATCAGGATCTATGATGTTGGCATGAAGAAGAAGGGTGTCGACGAGTTCTCTCACTGTGTTCACC
TTGTCTCATGGGAGAAGGAGAATGTGTCCAGTGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAATAAGTACATGACCAAG
CATGCAGGAAAGGATGCCTTCCACCTCAGGGTCAGGGTTCACCCGTTCCATGTGCTCCGTATCAACAAGATGCTTTCGTG
TGCCGGGGCTGATAGGCTCCAGACTGGTATGAGGGGTGCTTTTGGGAAGCCGCAGGGAGTCTGTGCCCGTGTTGCCATTG
GGCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCCACTGAGGCCCTTCGTCGTGCCAAGTTCAAG
TTCCCTGGCCGCCAAAAGATCATTGAGAGCAGGAAGTGGTAAGCACTGAAGATTGTTTAATGTGCTGAGATGATATGATA
TGCTTGTTTAAATTTCTGTGCGCCCATATCTCTAA-TTTGTGCTTCTTCTCTCAGGGGCTTCACCAAGTTCAACCGCAAC
GACTACCTCAAGTTCAAGAGTGAGGGCAGGATCTTGCCTGATGGAGTCAACGCTAAGGTAAATATACTTGATGCTGGGCA
ATTGTTTTGTCGATGTTCTTCTTTATCCTGCCTTAGTAAACCGTTGTCCCTGCATCAACTAATTGT-TCATGTTTCTTGC
TTTGCAGCTGCTCGGATGCCATGGCCGCCTTGCGAACCGTGCCCCTGGACAAGCTTTCCTGTCTGCCGCATAATCTAGCA
GAAGAAGTCTATCCGTTCTATCAGAACTTATTTTACTGTGTGGAACTTAGATTCCAAGTGCCTGTGGTGCTATGTTATTT
TGTCTGAATGTTGTGTCGAACCTTGTTATGGAAGATATTATCTATTTTGTGATGATGGTACTAATATGAACCGCCTGTTG
AATCATTGCCGCTTGAATTCGTTTGTCAATGTATTTTGCTGTGGTG--------------------GATGCTTCATTTTA
TGAAGCTACATCAGGAAAATGTTATACGTTCTTTGAAAC------------------------AAGCAAAATTCTGGCC-
----------CAGTAATGTTTTTG---------AAGTACCAGTATACAATTTCCGGATGTCTAATTGGTTAGTGTATCGT
GTGCTGGTCAATTTTGCTGGCGTTTAGGAGAGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATTACACAATTTCCGGACGCCTAGTTCG
TTCAGTTGGTTGGTGTTTCGTCTGCCGGTGTCTTTGATGCATCCGAACTGCGTTTCATTTTCTCTTTTTTAT-----AAA
ATATAAAATTCATGTCACTTTGCCTTCCTTTTTCCCC-------------------------------------------
-----------------------------------------------
>chr1B_572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GGGCCTAAACCATTTCCTCCTGCGGCCCAAACTCCCAGGTCACGCATGACGCAAACCAAATGTAG
ACGTCGGCCAGTCCAAGTCCAATATATATGACACGGTTTAGAGCAAACCGATTTGAGCCGAACGATTGAAAAATCCAACC
GCTCCACCGGGTCTGGGAGTAAAGTGTGGCCCGAATCTTCTGGTGTTTTCTGGGCCTGGCCCAATTTCTCCTCAGGCCCA
ACAGCTCCACCGGGTCGGTCACGCATGACGCAGACCCAATATGGACAGTCCAAGTCCAATAGCACCACCTCCACGCGGAA
ACCCCAGCCAGGACAGCAACCCATTCGCAATCCCCACCTCTATATAAGCGGCCCCGTCGATCCACACCAAACCCTAGTCG
CAGCTCTTCCGTCTCCTCCCGCCGCCGCCGCAGCCGCCGCCTGCCTCGAGCCGCCGTCGCCATGGGGAGAAGTAAGCACG
AGCTTTACCCTCCCCCTCTCGCCCTTGCGTGTATGCTACTCTAGTCTAGCGTTCATCTGGCC-GTAGCTACGGTTCGTGC
AATCGTTTGAATTGGCGCGGTTGTGTGTGAATCTGGCCTAGATCCGTCGTAGCCGCGCGGAACCTGTGATATTTGTTGCT
CCCGATGTTTATTTAGTTTCTGTCTGGATGATT------------TTCATTCCCGTAGCTGTTCACTTGTGGTGATTCGA
AAGAACATTTGAGTAGCACAAGCTGCGGGTTCATCATCTGTTCGTTTCTTTTAAGCGTCTGTTTGTTTATTGGTGCCCGG
AAAATGCTCTAGGCATCTCAGATGTTAATATTTCCTGTGCTCTTTCATGTAGTAGTTTGCTAGGAAATGAAGAGATGTAT
GCTCTGGCTTGAAAGTTGTTCTAATCACTCTTAACACTGCTTCTGTTGATTTAGTTGTATGGTCAATGATACTCTATGAA
TGTGAATGAGTAGTTGCTGCGGTTACAATGGTATGCGTTCCCTGTTAATAAGCTGTTTAACTCGCCAACTGCTCATTCTG
AATCATGGTAGTAAGTAGTCTCTTGTTTGCCTATCAATGGTAACCTATGTTAAATTGAGTCTGACT-TACATGTTACTCA
TATCTAGTGTTGAATGTGGTGTAAATTAAAATAGTTCATTCTCAGTACCTGGAATGATGCACTGTCTGAACTGAGTTGCA
CATTCTTTTTAATGTTCACTGCATTTTGTTATTTTC-TTCGCATGTTTGCTGCTTTTAGTTGTTTTGTTCTGGTAATGAC
AAGATTCTCTGGTCAGGACCTGCGAGGTGCTATCGGCAGATCAAGAACAAGCCGTACCCCAAGTCAAGGTACTGCCGTGG
TGTGCCTGACCCTAAGATCAGGATCTATGATGTTGGCATGAAGAAGAAGGGTGTCGATGAGTTCTCTCACTGTGTTCACC
TTGTCTCATGGGAGAAGGAGAATGTGTCCAGTGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAG
CATGCAGGAAAGGATGCCTTCCACCTCAGGGTCAGGGTTCACCCGTTCCATGTGCTCCGTATCAACAAGATGCTTTCGTG
CGCCGGGGCTGATAGGCTCCAGACTGGTATGAGGGGTGCTTTTGGGAAGCCGCAGGGAGTCTGTGCCCGTGTTGCCATTG
GGCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCCACTGAGGCCCTTCGTCGTGCCAAGTTCAAG
TTCCCTGGCCGCCAAAAGATCATTGAGAGCAGGAAGTGGTAAGCACTGAAGATTGTTTAATGTGCTGAGATGATATGATA
TTCTTGTTGAAATTTCTGTGCCGCAATATCTCTAA-TTTGTGCTTCTTCTTTCAGGGGCTTCACCAAGTTCAACCGCAAT
GACTACCTCAAGTTCAAGAGTGAGGGCAGGATCTTGCCTGATGGAGTCAACGCGAAGGTTAATATACTTGATGCTGGGCA
ATTGTTTTGTAGATGATCTTCTTTATCCTGCCTTAGTAAACCGTTGTCCCTGCATCAACTAATTGTTTCATGTTTCTTAC
TTTGCAGCTGCTCGGATGCCATGGCCGCCTGGCGAACCGTGCCCCTGGACAAGCTTTCCTGTCTGCCGCATAATCTAGCA
GAAGTC-----TCCGTTCTATCGCAACTTATTTTACCGTGTGGAACTTAGATTCCAAGTGCCTGTGGTGCTATGTTATTT
TGTCTGAATGTTGTGTCGAACCTTGTTATGGAAGATATTATCTATTTTGTGATGATGGTACTAATATGAATGGCCTGTTG
AATCATTGCTGCTTGAATTCGTTTGTCAATGTATTTTGCTGTGGTTGTTGTCCTGTGGTTGAATTTGATGCTTCATTTGA
TGAAGCTACATAAGGAAAATGTTACTCGTTCTTCACACGGTTTGAAACATTCTGTAAAGAGTTGAGCAAAATTCGGGCCG
TGGCACCTTTCAGTAATATTGTTG---------AAG---CAGTATACAATTTCCGGATGTCTA----GTTAGGGTATCAT
CTGCTGGTCAATTTTGCTGGCGTTCAGTAGAGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGTATACAATTTCCGGACGCCTTGTTCG
TTCAGTTGGT---TGTTTCGTCTGCTGGTGTCTTTGATGCATCCGAACCGCGTTTCATTTTCT-TTTTTATAAAAATGAA
ATATAACATTCATGTCAGTTTGCCTTCCTTATTTCCCCTGTAGTTGATGGTTCGAAATCCCTAGAATTACCAGAAGGGTG
ATCTGGATTTGGGAGCACAATTGAGAATTGACCGAACATGAAATCC-
>chr4A_1787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------CTCTGATCAGGACCTGCTAGGTGCTACCGCCAGATAAAAAACAAGCCATACCCCAAGTCAAGGTACTGTCGTGG
TGTACCTGACCCGAAGATCAGGATCTATGATGTTGGGATGAAGAAGAAGGGAGTGGATGAGTTCCCCTCCTGCGTCCACC
TGGTCAGCTGGGAAAAGGAGAATGTCTCTAGCGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACGAAG
AATGCTGGAAAGGATGCGTTCCACCTGAGGGTCAGGGTCCATCCATACCATGTCCTTCGTATCAACAAGATGCTTTCATG
TGCCGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTGGGAAGCCTCTGGGTACCTGTGCTCGTGTGGACATTG
GCCAAGTACTCCTATCTGTGCGCTGCAAGGAGAGCAATGCTGTTCATGCTGATGAAGCCCTCCGCCGTGCCAAGTTCAAG
TTCCCTGGCCGTCAAAAGATCATTCGCAGCAGGAAGTGGTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr4B_1787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------CTCTGATCAGGACCTGCTAGGTGCTACCGCCAGATAAAAAACAAGCCATACCCCAAGTCAAGGTACTGCCGTGG
TGTACCTGACCCGAAGATCAGGATCTATGATGTTGGGATGAAGAAGAAGGGAGTGGATGAGTTCCCCTCCTGCGTCCACC
TGGTCAGCTGGGAAAAGGAGAATGTCTCCAGCGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAG
AATGCTGGAAAGGATGCGTTTCACCTGAGGGTCAGGGTCCATCCATACCATGTCCTTCGTATCAACAAGATGCTTTCATG
TGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTGGGAAGCCTCTGGGTACCTGTGCTCGTGTGGACATTG
GCCAAGTGCTCCTATCTGTGCGCTGCAAGGAGAGCAATGCTGTTCATGCTGATGAAGCCCTCCGCCGTGCTAAGTTCAAG
TTCCCTGGCCGTCAAAAGATCATTCGCAGCAGGAAGTGGTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr4D_1787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CTCTGATCAGGACCTGCTAGGTGCTATCGCCAGATAAAAAACAAGCCATACCCCAAGTCAAGGTACTGTCGTGG
TGTACCTGACCCGAAGATCAGGATCTATGATGTTGGGATGAAGAAGAAGGGAGTGGATGAGTTCCCCTCCTGCGTCCACC
TGGTCAGCTGGGAAAAGGAGAATGTCTCCAGCGAGGCTCTTGAGGCTGCCCGTATTGCTTGCAACAAGTACATGACGAAG
AATGCTGGAAAGGATGCGTTCCACCTGAGGGTCAGGGTCCATACATACCATGTCCTTCGCATCAACAAGATGCTTTCATG
TGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTGGGAAGCCTCTGGGTACCTGTGCTCGTGTGGACATTG
GCCAAGTTCTACTATCTGTGCGCTGCAAGGAGAGCAATGCTGTTCATGCTGATGAAGCCCTCCGCCGTGCCAAGTTCAAG
TTCCCAGGCCGTCAAAAGATCATTCGCAGCAGGAAGTGGTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>SNPs
---------SS--------------------------S--------------------S------------SS------S
-----S-----SS-S-S-------S-----S-----S-S-----------S-S--------------------S------
S-------S-------------S---------S--------------S--------------------------------
----------------------S------------SS------SSSSSSSSSSSSSSSSSSSSSSSS-------------
-S----S--------------------S-S------------S--S---------------S---------------S--
---SS----S---------------S-----S---S---------SS---S-------SS----S----S----------
----------SS---------------------------------S----S-S-------S----S--------------
S-S----------------------------------S------------------------------------------
------------------------------------S---S-------S-------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--------S--
---------------------------SS-------S-SS-S------------------------S-------------
--S--------------S----------------S-------------S---S--S-----------S------------
--------------S----S------S------------------------S---------------------SS-----
----------SS------------S--------------------------S----------S--------S--------
SS--------------S-----S--SSSSSSS--SSSS-S------------------------------------SS--
------------------------S---S-------------------S---------------S-S--------S----
-------S----------------------S--S---------S----------S--S---S-----S------------
---------S-------------SS--SSS--S--SS---------------------------S---------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------SS-----------S--------------S--------S-S---------------------------------
------------------------------------------------------------S-----------S-------
---------S------S---S-------------S------S---------------S----------SSSSS----S--
---------------------------------S--------------------------------S-------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------S--S----------------------------------------------S---------------------S
---------SS--------------------------S-----------------S------S----------------S
-S-------SSSS-SS-SS-SSS-SSSSSSSSS-----------------------------------------------
----S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----S--------------
---------------------------------------------------------S----------------S-S---
---S--------------------S-S-SS-------SSS-SS---------S--------------------S------
-----S---------------------------S-------S----S
>forward_208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CAACCACGCTTCATGCTCTG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_1298
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TCAAGCTGCGGGTCATACTC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_1267
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATGCCCGTAGCTGTTCTCA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CATGTCTGGCT
TTGCAGCTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_1315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTTCAAGCTGCGGGTCATA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_3161
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------CCTCCGTCTGGTGAAGAGTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
