>input_sequence_46284
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----------------------------------------CCCACGCGAATCCGCCCCCGCCGCCATGGCCTCCCCGCCG
GGCGCCGCCCGCCTCGCCGCCCTGCTGCTCCTCGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGCGGACAA
CCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCTGCGCGT
CCATGACCCTCCGCTCCGCGGCCCCCGCCCTCCCGTCCGCCGCCCCCGCTGCGCCCGCGCCCGCGCCGCCCTCCCCTCTC
CACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCTGCGCCT
CCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGCGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCCACAACT
TCACCGCCTCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTCCCCGAG
GCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGAGGAGCTCGTCGGCGACATCGCCACCCTCGT
CGCCGCTGACGGCGTCAACCGCACCGACGGGCTCTCCTCGCAGGTCTTCGAGACGCTCTACCGGGTCAACGTCGCCGGCC
GCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAACAAGGAATCATCC
AGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGAGAGGTGGCTCCGGA
CAACGTCTACAACTCGGCGAGGTCGGTGAGGTCAGACGGCAATCTGACATGGGGTTTCCCTGTGCCCGCTCGCAACCGGT
ACCTCGTGCGCATGCACTTCTGTGACATTGTGAGCAAGGCACTGTATCAGCTCTACTTCAGTATCTATGTCAATGGTCAT
CTCGCAGTGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGTGGACGT
TGAGGATGAAGGGATGCTGAAACTGGCCATTGGTGGCTCCAAGATGAGCCAGCCTGGAGAAGCGAGTGGTTTCCTGAATG
GGCTCGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGGGGATTTCCCTGTTGTTCTGGACATGGGGTACCTG
GTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTTTGGTTTTGGTCAT
GCTGGTGCTGAGGTTGAGGACCGAGCTGAAAAACAATGGAACGCTTTGGTTCAGCCAGTCAGTGGATTCTGGTGAGGGGA
AGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAAGCAGCATGAGATCTGAGAAGCTTCAACTTGTGT
CTGTTATCTGTATCCCATGGCCTAATCTTGTGCTTCGTTTGTAAGTATTGTAGTTTTCTAGTTCTACATTTCTATGCCTT
TCATGGTTGAAGTTTCAATTGTTTGAGCTTGGCCAGTGCAGAGCACAACTATTGTGTGTACTTAAGAATTAAGACGTGTT
TGTATT--------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G514000
GCTAGTTCGAGGAAACATTATTAATTTTTACCTCGATTACTATTAGTGGCCTTGTATATATGCAAAACGTATTTTCCGTA
GTGACCTTGTATAAGGGAATGGAGGGAGTATCATAAATGATCATATTTATTGTCATGCATGATATAAAGTAGCATAACAT
TTAACATGATACGGTATCTACCTACTCCCTCCGTCTGTGAATAAGTGTACTTCTAAGTTTTGTCCTAAGTCAAAGCTTTA
AAATTTTAACCTATTTTATAGGAAAAAATAGCAGCATTTATGACACTAAATTAGTATCACTAGACCCGTTTCAAAATGTA
CTTTCAGAATATACTAATTTTATGCCATATATGTTACTACTCTTTTCTACAAAGTTGGTCAAACTTTTAAAAGTTTGACT
TATGACAAACGGTAGAAGTACACTTATTCACGGACGGAGGGAATATGTTACTACTCTAACCCTCTCTTTCTTCTTTAATT
CTCTTCCACATTAGCATGTTTGCTCTTCCCGAGTGCATGAGTAGCTAAGATACCATCACTATGGCAAGCCTTGACCCCAA
GAAAAACCAATGCTAAACACGTGAACCTATGCAAAAAGACTACCGACCAATACATGAAGGAGTTTGGTCACTAAACAATT
AGATAAAGGTGGCTTAGCTACAAAAGCTATGCACCCATACATTAAGGATATTAGTTGCTAAGCATTTTAATGAATTCATC
ACCTCACTTTATTAGCATCAATGCATTGAGAGAGGTCTAAGAAATAAAAATAGCAAACGCTGTAAAATTTACATTCTCCG
TGTAAAAATCCAACCGACACGGCGATGGGCGATACACAGCCGCGTTCGTGTGCCCCACCCACCACCCCACCGGCCGAACT
CCATTACCCATCTTCCACGCGCTTGTCTGCCGGCCGAATCGATTCCAAGTCCAACTCTGAGCTGTTCCCCATCGCCATTT
TCCGTCTCCATTTCTCCCCACCTTCCCCGACCCCCAAATCCCCACGCGAATCCGCCCCCGCCGCCATGGCCTCCCCGCCG
GGCGCCGCCCGCCTCGCCGCCCTGCTGCTCCTCGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGCGGACAA
CCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCTGCGCGT
CCATGACCCTCCGCTCCGCGGCCCCCGCCCTCCCGTCCGCCGCCCCCGCTGCGCCCGCGCCCGCGCCGCCCTCCCCTCTC
CACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCTGCGCCT
CCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGCGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCCACAACT
TCACCGCCTCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTCCCCGAG
GCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGAGGAGCTCGTCGGCGACATCGCCACCCTCGT
CGCCGCTGACGGCGTCAACCGCACCGACGGGCTCTCCTCGCAGGTCTTCGAGACGCTCTACCGGGTCAACGTCGCCGGCC
GCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAACAAGGAATCATCC
AGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGAGAGGTGGCTCCGGA
CAACGTCTACAACTCGGCGAGGTCGGTGAGGTCAGACGGCAATCTGACATGGGGTTTCCCTGTGCCCGCTCGCAACCGGT
ACCTCGTGCGCATGCACTTCTGTGACATTGTGAGCAAGGCACTGTATCAGCTCTACTTCAGTATCTATGTCAATGGTCAT
CTCGCAGTGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGTGGACGT
TGAGGATGAAGGGATGCTGAAACTGGCCATTGGTGGCTCCAAGATGAGCCAGCCTGGAGAAGCGAGTGGTTTCCTGAATG
GGCTCGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGGGGATTTCCCTGTTGTTCTGGACATGGGGTACCTG
GTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTTTGGTTTTGGTCAT
GCTGGTGCTGAGGTTGAGGACCGAGCTGAAAAACAATGGAACGCTTTGGTTCAGCCAGTCAGTGGATTCTGGTGAGGGGA
AGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAAGCAGCATGAGATCTGAGAAGCTTCAACTTGTGT
CTGTTATCTGTATCCCATGGCCTAATCTTGTGCTTCGTTTGTAAGTATTGTAGTTTTCTAGTTCTACATTTCTATGCCTT
TCATGGTTGAAGTTTCAATTGTTTGAGCTTGGCCAGTGCAGAGCACAACTATTGTGTGTACTTAAGAATTAAGACGTGTT
TGTATTGCTACTACTTCGCTTACCTCTATCCAGTAATTGAAATATGATCCAATACCTGTCTGTGATGTCTCTATTTTTTG
TATCATGGTAGTATGGTACTATAATTCCATTATACCCTTAGGAGAATCCTTTGTATGAAATGATTAGTTATGTAGAAGAC
ATTACTGGAGGCAAAATATTTCTTACAACTGAAGAATGATTTAGTTGTTGCGAGGGGGAATCTGTTGGTTCAAACCAATT
AAGAAGTAGCTACAGTGTTCCTTGTAGTCATGTCATCAGTAAGCACATCTGTAGTCTGGACTATTTGCGTAACCATGTCC
CACAAAATTAGCTAGTTGAATACTTGAATTTATGTCTGACCGCGTGGTGGATTTAGTCTCAGTGCCTACCAGATTATGAT
GCCTTGGGAATTTCACTCTCATACTTTGCCTATTATTGTTTTTGTGTGTTTGTCTTTGTGTTTGTG--------------
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-----------------------------------------------------CAGACTAATAAAATGAGAAGCTTGAAT
GCATTAGCACCAGTAGATCTTAGATTTTAGAAAAACTAGTAGATGTCAGGTAAGCGGTATTAATAGAATTTTCTGACCCC
TTCATTTTGGAGAG------------------------------------------------------------------
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-------------------------------------------CACTTCTTTGAGGTTTCATTGAAATCTTCACTAGTTC
TTTTTTGCTCTAGTGTTGTGGTAGCTCTTATTAGTTATTATAAGACTTCTTTCACGAAACTGTGCAGGGTATATAGTTAC
TTGTCTCACTCTGCTTCTTTTCGTATGCACTATATCATTATATGTGCCTTCTCAAACTCCTGAGATCAGTTTAATTCATA
GTGATTGAGTAGCTGCAGCTCTAAATCTTGATGCTACCTATTGTTTCTGATTCTCTTGTATTAAGAGTTTTCATCGTTGA
CATTTTGCATTCACAAATGGTTTAATTTGAATTTAGTTGCTTTATTAAAAAGGAACTACAAGAATAATTCTTGTGAAATA
ATTTGTTCAACTGAAATTGCTGGAATTGCTATGTCAAAACATATCTTAAGGTTGTTGCCTGA
>chr4B_799
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------------------------------------------------------------------------------CG
TGTAAAAAGCCAACCGACACGGCGATAC----------GCCGCGTTGGTGTGTCCCACCCACCACCCCACCGGCCCAAAG
T-------CATCTTCCACGCGCTGGCCGGCCGGCCGAATTGATTCCAAGTCCAACTCTGAGCTGTTCCCCATCGCCATTT
TCCGTCTCCATTTCTCCCCACCTTCTCCGACCCCCAAATC--------------CCCCCGCCGCCATGGCCTCCCCACCG
GGCCCCGCCCGCCTCGCCGCCCTGCTGCTCCTTGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGCGGACAA
CCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCTGCGCCT
CCATGACCCTCCGCTCCGCGGCGCCCGCTCTCCCGTCCGCCGCCCCCGGCGCGCCCGCGCCCGCGCCGCCCTCCCCTCTC
CACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCTGCGCCT
CCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGTGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCCACAACT
TCACCGCCCCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTCCCCGAG
GCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGACGAGCTCGTCGGCGACATCGGCACCCTCGT
CGCCGCTGCCGGCGTCAACCGCACCGACGGGCTATCCTCGCAGGTCTTCGAGACGCTCTACCGGATCAACGTCGCCGGCC
GCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAGCAAGGAATCGTCC
AGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGGGAGGTGGCTCCGGA
CAACGTCTACAACTCGGCGAGGTCGGTGAGGTCCGACGGCAATTTGACATGGGATTTCCCTGTGCCCGCTCGCAACCGGT
ACCTTGTGCGCATGCACTTCTGTGATATTGTGAGCAAGGCATTGTATCAGCTCTACTTCAGTATCTATGTCAATGGTCAT
CTCGCAGCGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGTGGACGT
TGACGATGAAGGGATGCTGAAACTGGCCATCGGTGGCTCGAAGATGAGCCGACCTGGAGAGGCGAGCGGTTTCCTGAATG
GGCTGGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGTGGATTTCCCTGCTGTTCTGGACATGGGGTACCTG
GTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTTTGGTTTTTGTCAT
GCTGGTGCTGAGGTTGAGGACTGAGCTGAAAAATAATGGCACGCTTTGGTTCAGCCAGTCAATGGATTCTGGTGACGGGA
AGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAAGCATCATGAGATTTGAGAAGCTTCAAATTGTGT
CTGTTATCTGTATCTGATGACATAATCTTGTGCTTCGGTTGTAAGTATTGTAGTTTACTAGTTTTACATTTCTACGCCTT
TCATGGTTGAAGTTTCAATTGTTTGAGCTTGGCCAGTGCAGAACACAACTACTGTGTGTACTTAAGAATTAAGATGTGTT
TGTATTGCTACTACTTCGCTTACCTCTATCCAGTAATTGAAATATCATCGAATACCTGTCTGTGATGTCTTTATTTATTT
TATCATGGTAGTATGGTACTATAATTCCATTATGCACTTAGGAGAATCCTTCATGTGAAATGATTAGTTATATTGAAGAC
ATTACTGGAAGCAAAATATTTCTTACAACTGGAGAATGATTTAGTTGTTGTGAGGGGGAATCTGTTGGTTCAAACCAATT
AAGGAGTACTTGCAATGTTCCTTGTAGTCATCTCATCAGTAGGCACATCTGTAGTCTGGACTATTTGCGGAACCATGTC-
--------TAGCTAGTTGAATACTTGAATTTATGTTTGACCCCGTGGTGGATTTAGTCTTAGTGCCTACCAGATTATGAT
GCCTTGGGAATTTCT-TCTCATACTTTGCCAAT-----TTTTTTTGTGTGTGTGTTTGTGTTTGTGCAATGTAACGTTTT
TTTTATCTACCCAGCACTAAATGAAGCACTAAAATGTAATAAATGAATCACTAAGTGAAGCAGAGGAATACCTATATTAT
CCATTGTTTTCTTCAGTATGATGCATTTTTTGCATTCGTACAGTTTCATTCATCAGACTAATAAAATGAGAATCTTGAAT
GCATTAGCATTAGTAGATCTTAGATTTTAGAAAAACTAGTAGATGTCAGGTAAACGGTATTAATATAATTTTCTGATCCC
TTCACTTTGGAGAGCACTTCTTTAAAAAAGGGCAACCTGGTGCATGTAGCTCCCGCTTGCGCAGGGTCCAGGGAAGGGTC
CGACCACTTTGGGTCTATAGTACGCAGCCTTTCCCTACATTTCTGTAAGAGGCTGTTTCCAGGACTTGAACCCATGACCT
CATGGTCACAAGGCAGCAGCTTTACCACTGCGCCAAGGCAGAGCACTTCTTTAAAGTTTCATTGAAATCTTCAATAATTC
TTGTTTGCTCTAGTGTTGTGGTAGCTCTTATTAGTTATTGTAAGACTTCTTTCGTGAAACTGTGTAGGGTATATAGTTAC
TTGTCTTAGTCTGCTTCTTTTCGTATGCATTGTATCACTATATGTGCCTTCTCAAACTCCTGATATCAGTTTAGTTCATA
GTGATTGAGTAGCTGCAGCTCAAAATCTTCATGCTACCTCTTGTTTCTGATTCTCTTGTATTAAGAGTTCTCATTGTTGA
CATTTTGCACGCACTGATGGTTTAATTTGAATTTAGTTGCTTTATTAAAAAGGAACTACAAGAATCATTCTTGTGAAATA
ATTTGTTCAACTGAAACTGCTGGAATTGCTATGTCAAAACATATCTTAAGATTGTTGTCTGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------S-----------------SSSSSSSSSSSS--------S-----S----------------------S--SS
SSSSSSSS---------------S-S-S-----------S----------------------------------------
-------------------------S--------------SSSSSSSSSSSSSS----------------------S---
---S----------------------------S-----------------------------------------------
------------------------------------------------------------------------------S-
----------------------S-----S-------------------SS------------------------------
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-------------------------------------S------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------S-------------------S---------
--------S------------------------S------------------------------S---------------
------------------------------------------------------------------S---------S---
-----------------------------------------------------------------S--------------
---------------------------------S---------S---------S--------------------------
----S--------------------S---------------S--------------------------------------
-------S------------------------------------------------------------------------
---S--------------------------S--------S----------SS--------S-----S-------------
----S----------------------------------------S-----------S----------------------
--------------------------------------------------------------------------S-----
---------------------S-----------S-----S---------------------S-------------S----
--------------------------------------------------S--------S-------------S------
--------------SS---S-S---------------S------------------S------S----------S-----
------------------------------------------S--------S----------------------S-----
---------------------------------------------S---S--------------------S-----S--S
---------------------------------S-S---------------SS-S----------------S-S------
---------S---------------------S------------------S-----------------------------
---S----SS-S--S----------------S---------S---------------------------S---------S
SSSSSSSS---------------------------S-----S-----------------S--------------------
--------------SS--------------S--SSSSS-----S-----S---S--------------------------
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------------------------------------------------------------------------S-------
---------SS------------------------------------------S-----------S----------S---
----S---------------------------------------------------------------------------
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----------------------------------------------------S-S------------------S--S---
--S------------------------------------S-------------SS---------S---------------
------S-S--------------------S-S-----S-------------------------S---------S------
---------------------S-------S---------S-----------------------------S----S-----
---------SS---SS-------------------------------------------------S--------------
----------------S---------------------------------S------S----
>forward_557
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---------------------------------------------------------ACTATGGCAAGCCTTGACCC---
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>reverse_1874
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---------------------------------AGACGGCAATCTGACATGGG---------------------------
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>forward_558
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----------------------------------------------------------CTATGGCAAGCCTTGACCCC--
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>reverse_2147
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------------------------------------------------------------------TGGTTTCCTGAATG
GGCTCG--------------------------------------------------------------------------
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>forward_2141
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-----------------------------------------AGATGAGCCAGCCTGGAGAA-------------------
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>reverse_2996
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-----------------------------------CTGACCGCGTGGTGGATTTA-------------------------
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