>input_sequence_46279
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-----------------------------------------------------------------------------ATG
GAGAAGGAGGCGACGACGCCGCGGCCGGTGTGCGCGCAGGAGGCGCTGGCGCTGCTCAACTGCGCCACCGAGAACCCCTA
CGACCGCGACAAGTGCCTCGCGCTCCTCGACGTGCTCCGGGAGTGCATCGCCCAAAAGGTAATTATAGGCTCAAGCGCC-
--TTACGTTTGGTGGGCCGTTTGCTCATTCTTGCCGATACAGCTATGATTTC----------------TGATCCTGTACT
GAAGGTCTTACATCTTAATAATTCCTTGGAAAGAAAAGATATCACCCACCACTGAGTAATCTTATCTTTGTGCCTAGCTG
TTTTTTGGATGGACAATTG---TGGGACTCCATAGCTCCCAATCATGTGTATCTCACATCATGTGCTTCCGTGTAATTTC
GAGCAAAATGAGCACCATGTCACATAATTCCTTGTCCAGTTGGAACAATCCTGCATGCTAAAGGAATACATACTTTTGTT
GGATGGTAGAGATATCAACTTGCCGATCAAAGCCTGGTTAAGTGTGAGAAGTTAGAAAGGCTTAGTTAAATCACTTGTTT
GTACTCGGAGTTACAAGGCTGAAACCTTATTC--GTACCACTTAGCTAGTACTAACTT----TTATTACCTGAGGTAATT
CCCCTTTGAAATAGCAAAGAGGAAATATTCAAAATCTTTTAATAGTTTCTCTCCTTTGAGGATTGTGTGATATTCGGTAC
TGCTAGTTAAGTGAGGCCGTATTGTTAGGGAGTAACTTGTCTAGAATCTGGCTCTTAGGTGGATATGTGCTATCTAAGGC
CATCTCCAACGCCAGGCGCTATGCCCTTTTCCTCCACGAGCTGAGACGAAGCGCTGTCTCCAATCCAAGTATTTAGCGTC
GGTGGTTAGCGCCTAGCGTTGGAACAGATGGCACTTAGTATTTTTTTTAAATTTTTGGTATTTTTTTTCTGTTTAAGCGC
CTAGATAAGTGCCCCCATTGTATTT-------------------------------------------------------
---------------------------------------------------------ATCAGAAGTCG------------
----ATCAATA----------------------------------GTAGCCGAACTCTAGGAACCGAATCCTCTGCAAAC
CATAAGC-CCTCCTGTTTTTCTTGCCTCTCAGCTCCTCTTGTCCACTGTCTTGGTCCCACAGTTAGTCGAACCATAGGTC
ACCACTTTCTTTACAAAAAGAATTAGTTAGGTACCATTCACGGCGAATTTTGTCATTTTCAGTTTCTCAATGTATGGGCT
T---ATTTTGCTATGAAAATTTGTCACATTACCCACCTGGCTAAATTGTATGGAATGCACCTTTAGATTTTATACTAGTT
GCTCCGTACTGTTGCAGTGTCCTTTTCAAGTTAAATTTCTGGTTATTTTTTGTGATCATGAGAAGTTATTGCATTACAAT
GTAGCTGGA--CTCTGGAAAAATTGGGTGCTAACAGAAACAATCATATTAGTCATTATCTGTTTGTTTCATAAAGAAGCT
GCAGCTGATCTTTGTGTGGATGTATTTTCGCTGTTACTATCCAACTAAATTTGTCTTTTCTTGTCTCATGTTTTCCTCCA
GGCAAGTCATCGCGAAGTATATTTCTGTCTTAGAAGATGTATTGTCTTGTTCAAATTTCTCTAAATCCCCCTCATTTTGT
TGAAATGCAGAAAGTGAAGAAATTTTCGTTGGCTGAAGCAGGCTCCACCAGCACCACGGAAGCTCCAAAAAACAAATAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3D_1_TraesCS3D01G157300
CCCAAATTCTGAACATGCTTT--AGCTTCAATAGCCAGTCGGTCGAATTTACCAACATTTCTACCCACAGCGAGCCTCTC
CACAGTTTACAGAATCATCCTACCAACCAAACTAACCACCTCGACACTCGGTTCAAACCAAT-AACATATAGCGAAGGCG
ACGCGCGGAACACAGTACAGATCAAACCACGCGAACAAAAGTGAGGGTCTGAGCAGGGGATAAGGAGAGGGGTTTGAGAG
GCTCACGAGAAAGCACTCGAATTGGTCCTCGAGGTCCTCGAGCGCGGCGCGGATAGCGTGGAGGCTCCTCGCCTCCTCGG
CCACCGCGTTCAGGTCGGCCGCCTCGTCGCCGTCCGCGGGGACCCCCTTGATGTGGACGACGCCCGGGGCCTTGCCCCCG
GCGCGGCGACGCACGGCGCGGAGGAAATGGGCGCGCGAGAGGGCGTGTATGGCGTCGCTGACCTTGTCGTGGAGGTCCCA
GATGGTCTCCAGCACGGCCTCCGCCTCCTCGGGCTCCATCCGAAACCCTAGCGCCGCCCCGGAAAATTCCAGACGGCGCT
GGCCGCTTTGCTTGGGTTG---------------ACTGCTTGGAGGGAG-----GAGAGAGGTAGGTAAAATTTTGCTGA
GCAATGATGATG---CTGACAGTGAC-AAGACATGGGCCATCGGCCGTCTGCAACATTCATTAAACGGCGGCCCTCTTAA
ATTCTGGGCCTGATTTTCCAAGCCCTCAGGGCTCTGTCTTGGATCTGGGCTCTAGCGGGTCGGGCTTCGGAAAGGGGAAA
ACTCGAGAGCTTTCCAAATCCTTCCTTGTATGCCATCAACGGCCGCCGGGGCGCCGCCGGTTTTCTTTCTTCTCGCCCAA
GCCGCCGCCG---ACACACCAAACCGGCAGCTGCCTGGTCGCCGGGGCCGACCCTAGAATAAATTGCGAAGCAGCGCCAC
GGGCTGCAGGTAGTAGCAGCTCCCCTCGAGC---CACATCTCTCCCGCGTGCGGTTGGTTGG----ATTGGATCGGCATG
GAGAAGGAGGCGACGACGCCGCGGCCGGTGTGCGCGCAGGAGGCGCTGGCGCTGCTCAACTGCGCCACCGAGAACCCCTA
CGACCGCGACAAGTGCCTCGCGCTCCTCGACGTGCTCCGGGAGTGCATCGCCCAAAAGGTAATTATAGGCTCAAGCGCC-
--TTACGTTTGGTGGGCCGTTTGCTCATTCTTGCCGATACAGCTATGATTTC----------------TGATCCTGTACT
GAAGGTCTTACATCTTAATAATTCCTTGGAAAGAAAAGATATCACCCACCACTGAGTAATCTTATCTTTGTGCCTAGCTG
TTTTTTGGATGGACAATTG---TGGGACTCCATAGCTCCCAATCATGTGTATCTCACATCATGTGCTTCCGTGTAATTTC
GAGCAAAATGAGCACCATGTCACATAATTCCTTGTCCAGTTGGAACAATCCTGCATGCTAAAGGAATACATACTTTTGTT
GGATGGTAGAGATATCAACTTGCCGATCAAAGCCTGGTTAAGTGTGAGAAGTTAGAAAGGCTTAGTTAAATCACTTGTTT
GTACTCGGAGTTACAAGGCTGAAACCTTATTC--GTACCACTTAGCTAGTACTAACTT----TTATTACCTGAGGTAATT
CCCCTTTGAAATAGCAAAGAGGAAATATTCAAAATCTTTTAATAGTTTCTCTCCTTTGAGGATTGTGTGATATTCGGTAC
TGCTAGTTAAGTGAGGCCGTATTGTTAGGGAGTAACTTGTCTAGAATCTGGCTCTTAGGTGGATATGTGCTATCTAAGGC
CATCTCCAACGCCAGGCGCTATGCCCTTTTCCTCCACGAGCTGAGACGAAGCGCTGTCTCCAATCCAAGTATTTAGCGTC
GGTGGTTAGCGCCTAGCGTTGGAACAGATGGCACTTAGTATTTTTTTTAAATTTTTGGTATTTTTTTTCTGTTTAAGCGC
CTAGATAAGTGCCCCCATTGTATTT-------------------------------------------------------
---------------------------------------------------------ATCAGAAGTCG------------
----ATCAATA----------------------------------GTAGCCGAACTCTAGGAACCGAATCCTCTGCAAAC
CATAAGC-CCTCCTGTTTTTCTTGCCTCTCAGCTCCTCTTGTCCACTGTCTTGGTCCCACAGTTAGTCGAACCATAGGTC
ACCACTTTCTTTACAAAAAGAATTAGTTAGGTACCATTCACGGCGAATTTTGTCATTTTCAGTTTCTCAATGTATGGGCT
T---ATTTTGCTATGAAAATTTGTCACATTACCCACCTGGCTAAATTGTATGGAATGCACCTTTAGATTTTATACTAGTT
GCTCCGTACTGTTGCAGTGTCCTTTTCAAGTTAAATTTCTGGTTATTTTTTGTGATCATGAGAAGTTATTGCATTACAAT
GTAGCTGGA--CTCTGGAAAAATTGGGTGCTAACAGAAACAATCATATTAGTCATTATCTGTTTGTTTCATAAAGAAGCT
GCAGCTGATCTTTGTGTGGATGTATTTTCGCTGTTACTATCCAACTAAATTTGTCTTTTCTTGTCTCATGTTTTCCTCCA
GGCAAGTCATCGCGAAGTATATTTCTGTCTTAGAAGATGTATTGTCTTGTTCAAATTTCTCTAAATCCCCCTCATTTTGT
TGAAATGCAGAAAGTGAAGAAATTTTCGTTGGCTGAAGCAGGCTCCACCAGCACCACGGAAGCTCCAAAAAACAAATAGA
AGCCCGCAATATTTCAGTGCCACTTACATAACATGTTCTAGGCCAGTCATACTGGTTTAGTGTTGGATCTGTCGTTTGTA
GTTCATTTCTGATTTAGATCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----GTCGAGTTGTCAA
CTGTTGATTATATGTAATTTTTACGCAGTTTGAGCAGAC-----------AAGGATGAATGTACTTTCGCTAGATTTGCT
GCTGCCGTTCCTACCCAGTTTCATGATTACAGGTGTCTGAAATAGATGCATGAACAGGTGCCATCTCTTCACAGATTTAA
GCTTGTAATTGTTCTGTGCCAAATCGTCGATGAAAGGGGAACTTGATGATTTCGAAGCTAATTTTTGGCCTGTTTAGTAT
CTGATCCTGACATGTGCAATTTGATGCGTTCATGGAGATGTCTTGTACTGCGCCGATGCTGATGTTTCTTGCCTTGTCTT
ACCTTTGTCTCTCTGGCAAGTATATATTCTTTCAGCTCCGGTCGTGAAGCAAAGCCATGTTGTCCCTGGGCTTATGTGAT
CCACACAGGTAGGAGTATGGAAGAACGTTGATGTTACTACACCAAATGATGTTTG
>chr3A_1
CCCAAATTCTGACCATGCTTTCAAGCTTCAATAGCCAGTCGGTTGAATTTACCAACATCTCTACCCACAGCGAGCCTCTC
CACAGTTTACAGAAACATCCTACCAACCAAACTAACCACTTCGACACTCGGTTCAAACCAATCAACATATAGCGAAGGCC
ACGCGCGGAACACAGTACAGATCAAACCACGCGAACAAGAGAGAGGGTCTGAGCAGGGGATAAGGAGAGGGGTTTGAGAG
GCTCACGAGAAAGCACTCGAATTGGTCCTCGAGGTCCTCGAGCGCGGCGCGGATAGCGTGGAGGCTCCTCGCCTCCTCGG
CCACCGCATTCAGGTCGGCCGCCTCGTCGCCGTCCGCGGGGACCCCCTTGATGTGGACGACGCCCGCGGGCTTGCCCCCG
GCGCGGCGGCGCACGGCGCGCAGGAAATGGGCGCGCGAGAGGGCGTGTATGGCGTCGCTGACCTTGTCGTGGAGGTCCCA
GATGGTCTCCAGCACGGCCTCCGCCTCCTCGGGCTCCATCCGAAACCCTAGCGCCGCCCCGGAAAATTCCAGACGGCGCT
GGCCGCTTTGCTTGGGTTGTTGCGGGGTTTCCGAACTGCTTGGAGGGAGAGAGAGAGAGGGGCAGGTAAAATTTTGCTGA
GCAATGATGATGGTGCTGACAGTGACTAAGACATGGGCCATCGGCCGTCTGCAACATTCATTAAATGGCGGCCCTCTTAA
ATTCTGGGCCTGATTT-CCAAGCCCTCAGGGCTCTGTCTTGGATCTGGGCTCTAGCGGGCCGGGC-TCGGAAAGGGAAAA
ACTCGAGAGCTTTCAGAATCCTTCCTTCTATGCCATCAACGGCCGCCGGGGCGCCGCTGGTTTTCTTTCTTCTCGCCCAA
GCCGCCGCCGCCGACACACCAAACCGGCAGCTGCCTGGTCGCCGGGGCCGACCCTAGAATAAATTACGAAGCAGCGCCGC
GGTCTCCAGGTAGTAGCAGCTCCCCCCAGAGCCACACATCTCTCCTACGTGCTGTTGGTTGGTTGGATTGGATCGGCATG
GAGAAGGAAGCGACGACGCCGCGGCCGGTGTGCGCGCAGGAGGCGCTGGCGCTGCTCAACTGCGCCGCCGAGAACCCCTA
CGACCGCGACAAGTGCCTCGCCCTCCTCGACGCGCTCCGGGAGTGCATCGCCCAAAAGGTAATTATAGGCCCAAGTGCAT
C---GCGTTTGGTGGACCGTTTGCTCATTCTTGCCGATACAACTATGATTGATACAAACTATGATTTGTGATCCTGTACT
GAAGGTCTTACATCTTAATAATTCCTTGGAAGG--AAGATATTACCCACCACTGAGTAATCTTATCTTTGTGCCTAGCTG
TTTTTAGGATGGACAATTG---TGGGACTCCATAGCTCCCAAACATGTGTATCTCACATCAT-TGCTTCCGTGTAATTTC
GAGCAAAATGAGCACCATGTCACATAATTCCTTGTCCAGTTGGAACAATCTTGCATGCTAAAGGGATACATACTTTTGTT
GGATGGTAGAGATATCAACTTGCCGATCAAAGCCTGGTTAAGTGTGAGAAGTTAGAAAGGCTTAGTTAAATCACTTGTTT
GTACTCGGAGTTACAAGTCTGAAACTACTTGTCTGTACCACTTAGCCAGTAA---CAATTTATTAGTGCTCGAGGTAATT
CCCCTTTGAAA-AGCAAAGTGGAAATAC-CAAAGTCTTTTAATAGTTTGTCTCCTTTGAGGATTCTGTGATATTCGGTAC
CGGTAGTTAAATGACGCCGTATTATTAAAAAGCAACTTGTCTAAAATATGTTCGTCAGGTGGATATGTGTTAT-----CT
AGCAGAATGACTACTCCAAAAAGTTATCAACAACAACAACAACAACAAAGCCTTTAGTCCCAAACAAGTTGGGGTAGGCT
AGAGCTGAAACTCATAAGATCTTTCTTTTGGGTTTCATCTCCATAAGAGTGGCTGAGTTTTGACGTTGGCTCGCCAAGCC
TATCACAACCCTCCTCCTTTACCCGGGCTTGGGACTGGCTATGTCGAGAAAACATAGGCGGAGTTCCAAAAAGTTATCAA
AACATGCAAAATAAATTGACAACACGAGATGCACCTATTATGTCATGACATTTTTAACACATTGAGAGAAAAAAAATCGA
TGCAATCAATA----------------------------------GTAGCTGAACAACCGGAACCGAATCCTCTGCAAAC
CTTTAAAGCCTCCTGTTTTTCTCGTCTCTCAGCTCCTCTTGTCCACTGTCTTGGTCCCACAGTTAGTCGAACCCTAGGTC
GCCTCCT------------------------------------------------------GTTTCTCAATGTATGGGCA
----ATTTTGATATGAAAATTTGTCACATTATCCATCTGCCTACATTGCATGGAATGCACCTTTCGATTTTATACTGGTT
GCTCCCTATTGTTGCAGTGTCGTTTTCTATTTTTCCCC------------TGTGGCCATGAGAAGTTACTACATCACAAT
ATGGCTACA--CTCTGCAGAAATTGGGTGCTAACAGAAATAATAATATTAGTCACGATCAGTTTGTTTCATAAAGAAGAT
GCAACTGGTCTTTGTGTGGATGTATTTTTGCTGTTATTATCCAACTAAATTTGTCTTTTCTTGTCTCATGTTTTCCTCCA
GGTAAGTCATCGCGAAGTATATTTCTGTCTTATAAGATGTATTGTCTTGTTCAAATTTCTCTAAATCCCCCTCATTTTGT
TGAAATGCAGAAAGTGAAGAAATTTTCGTTGGCTGAAGCAGGCTCCACCAGCACCACGGAAGCTCCAAAAAGCAAATAGA
AGCCCGCAATATTTCAGTGCCACTTACATAACATGTTCTAGGCCGGCCATACTGGTTTAGTGTTGGATCTGTCCTTTGTA
GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGATGAATGTACTTTCGCTAGATTTCCT
GCTGCCGTTCCTATCTAGTTTCATGATTGCAGGTGTCTGAAAAAGTCGCATGAACAGTTGCCATCTCTTCACAGGTTTAT
GCTGGTAATTGTTCTGTGCCAAATCGTCGATAAAAGGGTAACTTGATGATTTCGAAGCATATTTTTGGCCTGTTTAGTAT
CCGATCCTGACATGTGCAATTTGATGCGTTCATGGAGATTTCTTGTACTGCGTCGACGCTGATGTTTCTTGTCTTGTCTT
ACCTTTGTCTGTCTGGCAAGTATATATTCTTTCAGCTCCGGTCGTGAAGCAAAGCCATGTTGTCCCTGGGCTTATGTGAT
CCGCACAAGTAGGAATATGAAAGAACATTG-------------------------
>chr3B_1
CCCAAATTCCGACCATGCTTTCAAGCTTCAATAGCCGGTCGGTTGAATTTACCAACATTTCTACCCACAGCCAGCCTCTC
CACAGTTTACAGAAACATCCTACCAACCAAACTAACCACTTCGGCACTCGGTTCAAACCAATCAACATATAGCGAAGGCG
ACGCGCGGAACACAGTACAGATCAAACCACGCGAACAAGAGTGAGGGTCTGAGCAGGGGATAAGGAGAGGGGTTTGAGAG
GCTCACGAGAAAGCACTCGAATTGGTCCTCGAGGTCCTCGAGCGCGGCGCGGATAGCGTGGAGGCTCCTGGCCTCCTCGG
CCACCGCATTCAGGTCGGCCGCCTCGTCGCCGTCCGCGGGGACCCCCTTGATGTGGACGACGCCCGCGGGCTTGCCCCCG
GCGCGGCGGCGCACGGTGCGCAGGAAATGGGCGCGCGAGAGGGCGTGTATGGCGTCGCTGACCTTGTCGTGGAGGTCCCA
GATGGTCTCCAGCACGGCCTCCGCCTCCTCGGGCTCCATCCGAAACCCTAGCGCCGCCCCGGAAAATTCCAGACGGCGCT
GGCCGCTTTGCTTGGGTTGTTGCGGGGTTTCCGAACTGCTTGGAGGGAG-----GAGAGAGGTAGGTAGAATTTTGCTGA
GCAATGATGATGATGCTGACAGTGAC-AAGACATGGGCCATCGGTCGTCTGCAACATTCATAA-----CGGGCCTCTTAA
ATTCTGGGCCTCATTTTCTA-----------------CTTGGATCTGGGCTCTAGCGGGTCGGGCTTCGGAAAGGGGAAA
ACTCGAGAGCTTTCCAAATCCTTCCTTCTATGCCATCAGCGGCCGCCGGAGCGCCGCTGGTTTTCTTTCTTCTCGCCCAA
GCCGCCGCCG---ACACACCAAACCGGCAGCTGCTTGGTCGCCGGGGCCGACCCTAGAATAAATTACGAAGCAGCGCCAC
GGTCTCCAGGTAGTAGCAGCTCCCCTCGAGC---CACATCTCTCCCGCGTGCTGTTGGTTCGGTGGATTGGATCGGCATG
GAGAAGGAAGCGACGACGCCGCGGCCGGTGTGCGCGCAGGAGGCGCTCGCGCTGCTCAACTGCGCCGCCGAGAACCCCTA
CGACCGCGACAAGTGCCTCGCCCTCCTCGACGCGCTCCGGGAGTGCATCGCCCAAAAGGTAATTATAGGCTCAAGCGCCG
CCTTGCGTTTGGTGGACCCTTTGCTCATTCTTGCCGATACAACT----------------ATGATTTGTGATCCTGTACT
GAAGGTCTTACATCTTAATAATTCCTTGGAAGG--AAGATATCACCCACCACTGAGTAATCTTATCTTTGTGCCTACCTG
TTTTCTGGATGGACAATTGTGGTGGGACTCCATAGCTCTCAAACATGTGTATCTCACATCATGTGCTTCCGTGTAATTTC
CAGCAAAATGAGCACCATGTCACATGATTCCTTGTCCAGTTGGAACAATCCTGCATGCTAAAGGAATACATACTTTTGTT
GGTTGGCAGAGATATCAACTTGCCGATCAAAGCCTGGTTAAGTGTGAGAAGTTAGAAACGCTTAGTTAAATCACTTGTTT
GTACTCGGAGTTACAAGGCTGAAACTACTTGTCTGTACCACTTAGCTAGTAGTACCAATTTATTAGTACCCGAGGTAATT
CCCCTTTGAAA-ATCAAAGTGGAAATAC-CAAAGTCTTTTAATAGTTTGTCTCCTTTGAGGATTGTGTGATATTCGGTAC
CGCTAGTTAAATGACGCCATATTATTGGAGAGCAACTTGTCTAAAATATGTTTGTCAGGTGGATATGTGTTATCTAAACT
AGCAGAATGACTACTCCAAAAAGTTATG------AACAACAACAACAAAGCCTTTAGTCCCGAACAAGTTGGGGTAGGCT
AGAGCCGAAACTCATAAC-TCTTTCTTTTGGGTTTCATCTCCATAAGAGTGGCTGAGTTTTGACGTTGGCTCGCCAAGCC
TATCACAACCCTCCTCCTTTACCCGGGCTTGGGACTGGCTATGTCGAGAAAACATAGGCGGAGTTCCAAAAAGTTATCAA
AACATGCAAAATAAATTGACAACACAAGATGCACCTATTATGTCATGACATTTTTAAATCAGAAGTCG------------
----ATCTATACATTGAGAGAAAAAAAACAATGATGCAATCAATGGTAGCTGAACAACCGGAACCGAATCCTCTGCAAAC
CTTTAACGCCTCCTGTTTTTCTCGCCTCTCAGCTCCTCTTGTCCACTTTCTTGGTCCCACAGTTAGTCTAACCCTAGGTC
GCCATTCTCTTT---AAAAAAACTAGGTAGGTGTCATTCACAACAACAAAAATCAGTTTCAGTTTCTCAATGTATATATG
ACCGATTTTGATATGAAAATT-GTCACATTATCCATCTGCCTACATTGTATGGAATGCACCTTTCGATTTTCC-------
----------------------------------CCCC------------TGTGGCCATGAGAAGTTACTACATCACAAT
GTAGCTAGACTCTCTGCAGAAATTGGGTGCTAACAGAAATAATTATATTAGTCACGATCAGTTTGTTTCATAAAGAAGAT
GCAACTGGTCTTTGTGTGGATGTATTTTTGCTGTTATTATCCAACTAAATTTGTCTTTTCCTGTCTCATGTTCTCCTCCA
GGCAAGTCATTGCGAAGTATATTTCTGTCTTATAAGATGTATTGTCTTGTTCAAATTTCTCTAAATCCCCCTCATTTTGT
TGAAATGCAGAAAGTGAAGAAATTTTCGTTGGCTGAAGCAGGCTCCACCAGCACCACGGAAGCTCCAAAAAGCAAATAGA
AGCCCGCAATATTTCAGTGCCACTTACATAACATGTTCTAGGCCAGTCATACTGGTTTGGTTTAGAGTTGGATTCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACAACAAAATCCAATATGTTATGTCGAGTTGTCGA
CTGGAGATTATATGTAATTTTTACGCAGTTTGAGCAGAC-----------AAGGATGAATGTACTTTCGCTAGATTTGCT
GCTGCCGTTCCTATCCAGTTTCATGATCGCAGGTGTCTGAAATAGTCGCATGAACAGTTGCCACCTCTTCACAGATTTAT
GTTTGTAGTTGTTCTCTGCCGAATCGTCGATAGAAGGGGAACTTGATGGTTTCGAAGGTAATTTTTGTCCTGTTTAG---
--------------------------------------------------------------------------------
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-------------------------------------------------------
>SNPs
------------S------------------------------S------------------------------------
--------------S------------------------S----------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------S----------------------------------------------------------S--S----------
--------S-----------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------S----------------------
-----------------------------------------------------------------S--------------
--S--S----------------------------------------------S---------------------------
--------S---------------------------------------------------------S-------------
---------------------S----------S-----------------------------------------------
----S----------S-------------------------S--------SS----------------------------
-------------------------------S-SS---------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------SSSS-SS-------------------S--S-SS-------S----S---------
-----------S-------S-------SS----S--------------S-------------------------------
S---------S---S--------S----S---S----------S---S--SS-S-S-------------S-------SSS
SSSSSSSSSSSSSSSS-SSS-S-SSS-SSS-SS-S--S-SSSS-SSSS-SS-SS-SSSS----S-S-SS-SSSSSSS-SS
S-S-S-S-SSSS-SSSS-S-SSSS-SSS---SSS-S-SSSSSS-SSSSSSSSS-SS-S-S-SSSS--SSSSSSSS-SSS-
SSSS-S--SSSS--S-S--SSSSSS-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S----SSSS---------------------
-S-S-S----------------S--------------------------------------------------S------
S-----------SSS----S--S---S-----SS-------SS-S-SSSSSS---S-----------------------S
S---------S--------------------S---S---S---S--------------------S-----------S---
-----S--S------------S-----S-S--SSSSSSSSSSSSSSSSSS----SS------------S-S---S-----
------S---------S-S--------------------S---S----------SS---S------------------S-
---S---S--------------------S-------S-------------------------------------------
--------------------------------S-----------------------------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------------------------S------
---SSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---SS---------------------------------------------------------------------------
-------------S--------------S----------------SS----------S---------------------S
-------------------------------S------------------------------------------------
-S-------------------------------------S------------S---S--------------S--------
----------S---------------------------------------------------------------------
--S----S------S----S------S---SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_44
------------------------GCTTCAATAGCCAGTCGGTC------------------------------------
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-------------------------------------------------------
>reverse_1995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------AAGCGC
CTAGATAAGTGCCC------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1049
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGATCGGCATG
GAGAAGGAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2477
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGTT
GCTCCGTACTGTTGCA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1880
--------------------------------------------------------------------------------
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--------------------ATGCCCTTTTCCTCCACGAG----------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------TGCATGAACAGGTGCCATCT--------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
