>input_sequence_46232
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGAGCGTGACCAA
GTTCATCAAGTGCGTCACGGTGGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAGGTTCC
CCAGCGTACGTCCCTCCCCCAACCCTC--------------------------------CCCTTCCTCTTCT--------
---------------------TCTTCCTCCTCCCGGCCTGCTTGCT-GCTCACTCGGTCGCCGATCTGTTTCTTCCTTG-
----------------------------------G-----------------------------CAGGATTACATCCCCA
CCGTGTTCGACAACTTCAGCGCCAACGTCTCCGTCGACGGCAACATCGTCAACCTCGGCCTGTGGGACACCGCCGGTACT
TGCCCCA------TCCCTCTTCATTTCCACCACTGCTACTGCTACTGGTGTTCAGAGCCGCAAGTTCT------------
----------GAACCTGAAGGTTTGTGCTGTGTTTGCTTCGTT--------------------------------CAGGG
CAAGAGGACTACAGCAGGCTGAGGCCGCTGAGCTACAGAGGCGCCGACGTCTTCGTGCTCGCCTTCTCCCTCATCAGCAG
CGCAAGCTACGAGAATGTCCTCAAGAAGGTATATACATACATACTACGTTTCTAGCAAAAGTTACTGGCACATTAGTTCA
GAAATTACTTG--TTCCAGATTTGAGTGTGCTTGAGATTTCACCTGAA-----TGTTCCCAACTGATGATAATTGGGTCT
CTGCCTCTCTGGTCAAGCAGTGGATGCCAGAGCTCCGCCGGTTCGCGCCCAACGTCCCCATTGTTCTAGTTGGGACCAAG
CTAGGTGAGGAACCTGCACCCAACATGGCATTACTCCTTTCCATGAAGTTTCTGCAACGGCACTGGTTGCTCTGCATTTT
TGTCCCGATAGTTAATAATGGCGTTTCCGTTGTCCAGATCTGCGTGACCACAGAGCCTACCTCGCCGACCATCCCGGTGC
CTCGGCAATCACAACCGCACAGGTTTGCT--CCCCCACTTTCTGAACTTCTTTTCAACAACCAGGAGCGTAGACGGATGG
CTAATGTGCCATCTTCTTCCCCATTGTTGTTGTTGTTCAGGGTGAAGAACTCAGGAAGCAGATCGGCGCCGCAGCGTACA
TCGAGTGTAGCTCAAAGACACAGCAGGTAGTGCAACCGAGACCAGAGGCCGCGTT---GGAATTAAGAAGAATTTGTTGT
TGTCTGCTCTATTTCAGATAGGCACACGCACACA--CTGCATCATTCATTTCTATCTTAAATGACTTGGTGATTCTGTTG
GCCGTGCCAGAACGTCAAGGCTGTCTTCGACACCGCCATCAAGGTGGTCCTTCAGCCGCCGAGGAGGAGGGAGGTGATGG
CGGCCAGGAAGAAAACTAGGCGAAGCTCTGGATGCTCCATCATGTAAGCACT---CCACCTCTTGTCATTCACTCGCTTC
ATTGGTACTGTAAATTGTAATGGTGTGAGCAAACTATTCCCCAGATTTGCTCCATGAAAAATCTTGCTCACCGGTCACC-
--TTACCTCAAAATTGGCACGT---TCAGTTCGATTATGACCTATGAAATGCTGCTGCTGCTGCTGCTGCTGCTTAGATC
AGATTTTAGAGGTTAACTATAAC---CGATGCAAACAGCTGATTTTCCAAAATTTCAAATTCGCGTTGATTGCAGTGTTT
TTTGCTCAACACAGGAGTCCTGATCATGTCATTCTCTTTTTGAATCCACAGGCACTTGATGTGTGGCAGCACGTGTGCTG
CCTGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr1A_1_TraesCS1A01G333600
AGACTATTGCTATTGTAGTGCTCACACCTGCTAATAGTAACCGGTTAGGACTGTACTGCTGCGGTTTGCCCCCTGGAGAG
CACTAGCAGTGGTAAAGCGGGCACGTACTACTAACGGTACATGCCAGGAGATCGTTTCTTTTTCCTGATAGATATATGCT
TCTTGGAGAGCGTAAGCCAAAGTCCTCATTGCTTGCTCGAATTCGAAATCAAAGTGTACAACCACGAGGGCCGCCGTACT
ACCACTAGCAAGCATGTACTACGAGGTGCTAGTGCTACTCGTGCTCGTGTTGAGTTGATTGGAAGCTGTACTACATTTAC
TGTCAGCGCATTGCCCCCGTTGGGACTGCAAACAAGGCCGGTCTCGTTTAACCCGTTGCTCTACTAGAGAATCATTACAT
TATGCCATGTCCCCGACGTTTCGGCCGACTGTCTGTTTGGCGTTTGTGGCCAGGTCGTCCGTCCGTGTAGGCCC------
-----CAGCTTCACATGA----------GAGAGCGACCTG------CCCGCGCAGTGCT----TTCATTCATGGCCGTCC
ATCCACCGCC---------GTGATG----GTCTGCCGACGGTGGCTTTGCTG-ATGACTTGACAGTGGCAGCAGCCAGCA
CCAGCAGAGCATGCCGTTGCAGATCA-GCTGCACGTCCAAA------------ACAAAACAAAACCCCTCGTAGTAGTAG
CGGCGT--GCGTCGCGCCCCGTCCCAGGCGAGGCGA-----GGCCCCGCATTCACGCCACGCTCCCCGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGCAGCAGCAGCAGCAGTAAACGCAGCCAGAGGCCGGTTGTTTCTTGCTTTTGCTTTCAAGGAGG-
-CAGACCGGAGCAGAGCTGCGGCACGGCTCCCCTCGCTTTGGCCTCCCACGGAAGACAAGTATCCTTGTCTCTGGCTCGT
GGCTCCTTCCCCTTCTTCCCCGCGCTTGTTCTTCTC---CCCCCGTGA-------------------------GCTCCAG
CCGCTCTTGCTGTGCGGTGGAACTC---AAGCGAGCAGCCGATAGCGG--------CGGAGGAGAGATGAGCGTGACCAA
GTTCATCAAGTGCGTCACGGTGGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAGGTTCC
CCAGCGTACGTCCCTCCCCCAACCCTC--------------------------------CCCTTCCTCTTCT--------
---------------------TCTTCCTCCTCCCGGCCTGCTTGCT-GCTCACTCGGTCGCCGATCTGTTTCTTCCTTG-
----------------------------------G-----------------------------CAGGATTACATCCCCA
CCGTGTTCGACAACTTCAGCGCCAACGTCTCCGTCGACGGCAACATCGTCAACCTCGGCCTGTGGGACACCGCCGGTACT
TGCCCCA------TCCCTCTTCATTTCCACCACTGCTACTGCTACTGGTGTTCAGAGCCGCAAGTTCT------------
----------GAACCTGAAGGTTTGTGCTGTGTTTGCTTCGTT--------------------------------CAGGG
CAAGAGGACTACAGCAGGCTGAGGCCGCTGAGCTACAGAGGCGCCGACGTCTTCGTGCTCGCCTTCTCCCTCATCAGCAG
CGCAAGCTACGAGAATGTCCTCAAGAAGGTATATACATACATACTACGTTTCTAGCAAAAGTTACTGGCACATTAGTTCA
GAAATTACTTG--TTCCAGATTTGAGTGTGCTTGAGATTTCACCTGAA-----TGTTCCCAACTGATGATAATTGGGTCT
CTGCCTCTCTGGTCAAGCAGTGGATGCCAGAGCTCCGCCGGTTCGCGCCCAACGTCCCCATTGTTCTAGTTGGGACCAAG
CTAGGTGAGGAACCTGCACCCAACATGGCATTACTCCTTTCCATGAAGTTTCTGCAACGGCACTGGTTGCTCTGCATTTT
TGTCCCGATAGTTAATAATGGCGTTTCCGTTGTCCAGATCTGCGTGACCACAGAGCCTACCTCGCCGACCATCCCGGTGC
CTCGGCAATCACAACCGCACAGGTTTGCT--CCCCCACTTTCTGAACTTCTTTTCAACAACCAGGAGCGTAGACGGATGG
CTAATGTGCCATCTTCTTCCCCATTGTTGTTGTTGTTCAGGGTGAAGAACTCAGGAAGCAGATCGGCGCCGCAGCGTACA
TCGAGTGTAGCTCAAAGACACAGCAGGTAGTGCAACCGAGACCAGAGGCCGCGTT---GGAATTAAGAAGAATTTGTTGT
TGTCTGCTCTATTTCAGATAGGCACACGCACACA--CTGCATCATTCATTTCTATCTTAAATGACTTGGTGATTCTGTTG
GCCGTGCCAGAACGTCAAGGCTGTCTTCGACACCGCCATCAAGGTGGTCCTTCAGCCGCCGAGGAGGAGGGAGGTGATGG
CGGCCAGGAAGAAAACTAGGCGAAGCTCTGGATGCTCCATCATGTAAGCACT---CCACCTCTTGTCATTCACTCGCTTC
ATTGGTACTGTAAATTGTAATGGTGTGAGCAAACTATTCCCCAGATTTGCTCCATGAAAAATCTTGCTCACCGGTCACC-
--TTACCTCAAAATTGGCACGT---TCAGTTCGATTATGACCTATGAAATGCTGCTGCTGCTGCTGCTGCTGCTTAGATC
AGATTTTAGAGGTTAACTATAAC---CGATGCAAACAGCTGATTTTCCAAAATTTCAAATTCGCGTTGATTGCAGTGTTT
TTTGCTCAACACAGGAGTCCTGATCATGTCATTCTCTTTTTGAATCCACAGGCACTTGATGTGTGGCAGCACGTGTGCTG
CCTGAATTAGCACCCTGGACTGACTCTGGAGACGAAGCATGGTGTAGT-GGCAAGTCGATTTGCTGACATAGCGCGGGCG
TCTTTCTAATGCTTCGGTTCTGTTTAGCTACT---ACTATATGTTGCGTGTTTCGGTTTCTACTTCCCAATCCTGGAGCT
GT---------CTAGGATCGACTATTCGGATTGTAGGTGTAATGTTATGTAAGCAAGGTTGTGTAACAACTAGATACAGG
CAAGCTATAA-------------GTTTATGGTTAGCATCTCGTAGGGATTCGCTTCGATTCGCAGCAATTTGGGTGCAGA
TTGAAAAGTACAAACGTAAGTGTGCTGAAAATTAAACAACAAGAAGGCAGAGGGAATGCAGCCGGTGGCTGTTCCTGCTG
GATGTCTTTGCTAGCTGCCTCG-TTTCTGTGTTTGTAGCCATTGGTGAAGTCATTGTTGAGGAAATCATTAACTGGTAGC
TGCTCGGTCGGCTGATGAGTAGGGAATTAATAGGCTAATTGGCCATTTAATCAATTAATCGGATGATTTATCGGGTAATC
GGCTACTCGGGGACCCTATGAGTAGGGACTAATCGGCATGTTAACTGGTTAATCGGATGAATTCTTAAACAGGGGGTGAA
GTAGACTTGAGC-AATGTCGAAGAAGGGGGCATCGTCAAGTAGTAGTCGTCGTCACAGTGGAGGTATAACCTGTGGTCGA
CCGGGACTTGCTGGAAGGAGCAAGTGAGGTTGTAGCAGAAAAACCGGTCGATGCAGGCT---GTGGACTTGATGATTCTC
CCTCCTTTAGCTTCAGTCTGCATGAAGTACTTGCCAAATCCTGGTGGCACCAAAAGTCCACAATGACATCTCCAGAACAA
AGTAGCAACATGAAAATTGGAGGAAGAGACGTTTCCCTGAAAATGTCACCTTGTCCTTTG----CATTGGAATAACCCCT
GAAGCCGACTAGGCTGTGACTCGC------TCGTAGCAGCATGGATCAACAATGTCCATACTGTCATGTGCAAGCAAATT
CTGCAC
>chr1B_18
-----------------GTACTCACTCCTGCTAATAGTAACCGTTTACGACTCTACTGCTGCTGTTTGCTTCTTGGAGAG
GAGTGGTAAATCGGAAGCGGGCGCGTACTACTCCTGGTACACGCCAGGAGATCTTTCTTTCCCGGATAG----ATATGCT
TCTCGGAGAGCGTAAGCCAAAGTCCTCATTGCTTGCTCGAATTCGAAATCAG-GTGTACAGCCACGAGGGCCGCCGTACT
ACCGCTAGCACTACATA--TACGAGGTGCTAGTACTACTCGTACTCGCGTTTAGGATATTGGGAGCTGTACATT-TTTAC
TGTCAGACGTCGCGCA---TTGGGACTCTAAACAAGGTCCGTCTCGTTTAACCCGTTGTACCACTAGAGAATCATTACGA
GGTGGGAGAAAAAGAAAATCCTCTTGAAAGAAAAAGAAGGCTTGAAACGAGCCGCAAGCTGCGGCTCCTGGTCTGCTGCC
TCACTCAGCTTCACATGCGAGAACGAGCGAGAGAGAGAGAGAGAGACCTGCGCAGTGCTTTCATTCATTCATGGCCGTCC
ATCCACCGCCTGTGCGCCTGTGATTGTCTGTCTGCCCACAGTGGCTTTGCTG-ATGACTTGACAGTGGCAGCAG------
CCAGCAGAGCATGCCGTTGCAGATCAAGCTGCACGTC-------------------AAACAAAACCCCTCGTAGTAGTAG
TAGTAGCGGCGTCGCGCCCCGTCCCAGGCGAGGCGACGGACGGCCCCGCATTCACGCCACGCTCACCGAGG---------
------------------------GCAGCAGTAAACGCAGCCAGAGGCCGGTCGTTTCTTTCTTTTAAGGAGGCA---G-
-CAGACCGGAGCAGAGCAGCGGCACGGCTCCCCTTGCTTTCCCTTCCCACGGAAGACAAGTATCCTTGTCTCTGGCTCCC
-------TCCCCTTCTTCCCCACGCTTGTTCTTCTC---CCCCCCGTGAGCAGTAGCAAAGGGAGCG--AGCTGCTGCTG
CTGCTCTTGCTGTGAGGTGGAACCGTGGAAGTGAAGTGAGGAGGCGCGGCGGGAGCGTC---AGAGATGAGCGTGACCAA
GTTTATCAAGTGCGTCACGGTGGGCGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAGGTTCC
CCAGCGTACGTCCCTCCCCCAACCCTC--------------------------------TCCTTCCTCTTCTCCTCCTAC
CTACGGGCTAGGTAGTTCCCATCTTCCTCCTCTCGACCTCCTTTACCGCTCACTCGGTCGCCGATCTGTTTCTTTCTTG-
----------------------------------GGCTCACTCTGCTGGCTCTACATATATATGCAGGACTACATCCCCA
CGGTGTTCGACAACTTCAGCGCCAACGTCTCCGTGGACGGCAACATCGTCAACCTCGGCCTATGGGACACCGCCGGTACT
CACTCCA------TCCCTCCTCATTTCCACCACAGCTACTACTACTGGTGTTCACAACCGCAAGTTCT------------
----------GAACCTGAAGGTCTGTGCTGTGTTTGCTCCGTT--------------------------------CAGGG
CAAGAGGACTACAGCAGGCTGAGGCCGCTGAGCTACAGAGGCGCCGACGTCTTCGTGCTCGCCTTCTCCCTCATCAGCAG
CGCAAGCTACGAGAATGTCCTCAAGAAGGTATATACATAT-------GTTTCTAGCAAAAGTTACTGGCACATTAGTTCA
GAAATTACTTG--CTCCAGATTTGATTGTGCTTGAGGTTTCACCTGAACTGAATGTTTTGAACTGATGATAATTCGGTCT
C--------TGGTCGAGCAGTGGATGCCAGAGCTCCGCCGGTTCGCGCCGAACGTTCCCATTGTTCTTGTTGGGACCAAG
CTAGGTGAGAAACCTGCACCCAACGCGGCACTG----TTTCGATGAACTTTCCGCAATGTCACGGGTTGCTCTGCATCTT
TGTCCCGATAGTTAACGGCGT-TTTCCA-TTGTTCAGATCTGCGTGACCACAGAGCCTACCTCGCCGACCATCCCGGTGC
CTCAGCAATCACAACTGCACAGGTTTGCT--CCCCCTCTTTCTCAACTTCTTTTCAACAACCAGGAGCATCCACGGATGG
CTAATGTGCCATCTTCTTCCCCATTGTTATTC---TTCAGGGTGAAGAACTCAGGAAGCAGATCGGCGCCGCAGCTTACA
TCGAGTGCAGCTCGAAGACGCAGCAGGTAGTGCAACCGAGACCAGAAGCCGCGTAG--GGAATTAAGAAGAATTTGTTGT
TGTCTGGTCAATTTCAGATAGACACACGCACACA--CTGCATCATTCATTCTC-TCTTAAATGACTTGGTGATTCTGTTG
GCCGTGCCAGAACGTCAAGGCTGTCTTCGACACCGCCATCAAGGTTGTCCTTCAACCGCCGAGGAGGAGGGAGGTGATGG
CGGCCAGGAAGAAAACTAGGCGAAGCTCTGGATGCTCCATCATGTAAGCACACC-CCACCTCTTCTCATTCACTAGCTCC
ACTGGTACTGTA-----TAATGGTGTGAGCAAACCATTCTCCAGATTTGCTCCATGAAAAGTCTTGCTCACTGGTCACCT
TATTACCTCAAAATTGGCACATTCATCAGTTCGATTATGATCTATGAAATGCTGCTGCT---------------TAGATC
AGATTTTAGAGGTCAACTCGAAC---CGATGCAAACAGCTGATTTTCCAAAATTTCAAATTCGCACTGCTTGCAGTGTTC
-TTGCACAGTATAGGAGTCCTGATCCTGTCGTTCTCCTTTTGAATCCACAGGCACTTGATGTGTGGCAGCACGTGTGCTG
CTTGAATCAGCACCCCGGACTGACTCTGGAGACGAAGCATGGTGTAGTAGGCAAGTCAATTTGCTGACATAGCGCGGGCG
TCTTTCTAATGCTTCTGTTCTGTTTAGCTACTAGCACTATATGTTGCGTGTTTTGGTTTCTACTTCCAATCCAATCCTAG
AGCGTCAGGCGCTAGGATCGACTATTCGGATTGTTGGTGTAATGTTATGTAAGCAAGGTTGTGGAACAGCTAGATACAGG
CAAGCTATAA-------------GTTTATTGTTAGCATTTCGTAGGGATTCGCTTCGATTCGCGGCAATTGGTG-GCAGA
TTGAAAGGTACCAGCACAAGTGTGCTGAATATCAAACGGCAAGAAGGGAGGGGGAATGCCGCCGGTGCCTGTTCCTGCTG
GATGTCTT-GCTAGCTGCCTCCTTTCCTGTGTTTGTAGCCATTGGTGAAGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGACTTGAGCAAATGTTGAACAAGGGGGCATCTGTCAA-AGTAGTCGTCGTCACAGTCAGAGTATA-----TGGTCGA
CCGGGACTTGCTGGAAGGAGCAAGTGAGGGTGTAGCAGAAAAACAGGTCGACGGAATTGGCCGTCGACTTGTTGTTTCTC
CCTCCTTTAGCTTCAGTCTGGTTGAAGTGCTCATCAAATACCTTGCCACCAGGATGG-CACAATGGCATCTCCAGAACAA
GTGGT-AACATGAAAATTGGAGGAAGCGAGGTTTCCCTGAAAATGTCACCTTGCCTGCTCTTCCCATTGGAATAACTCCT
GAAACCGACAAGGCAGCGTCTCAAAGGTTTTCGTAGCAGCATGGATCAACAGTGTCCATACTGTTATGTGCA--------
------
>chr1D_471
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GCCC------
-----CAGCTTCACACGA----------GAGAGCAAGAGAGAGAGACCTGCGTAGTGCG----TTCATTCATGGCCGTCC
ATCCACCGCCTGTGCGCCTGTGATG----GTCTGCCCACAGTGGCTTTGCTGGATGACTTGACAGTGGCAGCAG------
CCAGCAGAGCATGCCGTTGCAGATCA-GCTGCACGTCCAAAACAATCAAACAAACAAAACAAAACCCCTCGTAGTAGTAG
TACTAGCGGCGTCGCGCCCCGTCCCAGGCGAGGC----------CCCGCATTCACGCCACGCTCCCCGAGAGAGA-----
------------------------GCAGCAGTAAACGCAGCCAGAGGCCGGTTGTTTCTTGCTTTTAAGGAGGCA---GA
CCAGACCAGAGCAGAGCAGCGGCACGGCTCCCCTTGCTTTGGCCTCCCACGGAAGACAAGTATCCTTGTCTCTGGCTT--
-----------CTTCTTCCCCACACTTGCTTGTTCTTCTCCCCCCGTGAGCAGTAGCAAAGGGAGCGCCAGCTGCTGTTG
CTGCTCTTGCT-TGCGGTGGAACTC---AAGTGAAGTGAGGGTGAGAGGGTTCAGCCGGAGGAGAGATGAGCGTGACCAA
GTTCATCAAGTGCGTCACGGTGGGCGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAGGTTCC
CCAGCGTACGTCCCTCCCCTCCCTCCTTTCCCTTTCTCCTCCTACCTACAGCAGTTGTTCCCTTCCTCTTCT--------
---------------------TCTCCAG---------CTGCTCTCT-GCTCACTCGGTCGCCGATCTGTTTTCTTTCTTG
GGCTCACTCTGCTGGGTCTACATATAT-----ATG-----------------------------CAGGACTACATCCCCA
CGGTGTTCGACAACTTCAGCGCCAACGTCTCCGTCGACGGCAACATCGTCAACCTCGGCCTATGGGACACCGCCGGTGCT
TACTCCA------CCCCTCTTCATTTCCACCACTGCTACTGCTACTGGTGTTCACAACCTCAAGTTCTACTGCTTGAAAC
AGCGGGTTCTGAGCCTGAAGGTTTGTGTTGTTTTCCTGTCCTT--------------------------------CAGGG
CAAGAGGACTACAGCAGGCTGAGGCCGCTGAGCTACAGAGGCGCCGACGTGTTCGTGCTCGCCTTCTCCCTCATCAGCAG
CGCAAGCTACGAGAATGTCCTCAAGAAGGTATATACATATAT-----GTTTCTAGCAAAAGTTACTGGCACATTAGTTCA
GAAATTACTTCAATTCCAGATTTGAGTGTGCTTGAGATTTCACCTCAA-----TGTTCTCAACTGATGATAATTCGGTCT
CTGCCTCTCTGGTCAAGCAGTGGATGCCAGAGCTCCGCCGGTTCGCGCCCAATGTCCCCATTGTTCTGGTTGGCACCAAG
CTAGGTGAGCAACCTGTACCGAACGCGGCAATG----TTTCGATGAACTTTCCGCAGTGCCACGGGCTGCTCTGCATCTT
TGTCCCGATAGTTAATAACGCGTTTCCA-TTGTTCAGATCTGCGTGACCACAGAGCCTACCTCGCCGACCATCCCGGTGC
CTCGGCAATCACAACCGCACAGGTTTGGCGGCCCCCTCTTACCCATCGTCTTCTCAACAATCACGAGCATCGACGGATGA
ATGATGTGCCATCATCTTCCCCATTGTTGTT---GTTCAGGGTGAAGAACTTAGGAAGCAGATCGGCGCCGCAGCTTACA
TCGAATGCAGCTCGAAGACGCAGCAGGTAGTACATCCGAGACCAGAAGCCGCGTAGTAGGAATTAAGAAGAATCTGTTGT
TGTCTGGTCAATTTCAGATAGACACACGCACACACACTGCATCATTCATTCTC-TCTTAAATGACTTGGTGATTCTGTTG
GCCGTGCCAGAACGTCAAGGCCGTCTTCGACACCGCCATCAAGGTGGTCCTCCAGCCGCCGAGGAGGAGGGAGGTGATGG
CCGCCAGGAAGAAAACCAGGCGCAGCTCTGGATGCTCCATCATGTAAGCATCCCGCCACCTCTTGCCATTCACTCGCTCC
ATTGGTACTGTG-------ATGGTGTGAGCAAACTGTTCTCCAGATTTGCTCCATGAAAAATCTTGCTCACTGGTCACC-
--TCACCTCAAAATTGGCACAT---TCAGTTCGATTATGACCTATCAAATGCTGCTGCT---------------TAGATC
AGATTTTAGAGATTAACTATGTAGAACGGTGCAAACAGCTGGTTCTCCAAAATTTCAAATTCGCGCTGCTTGCAGTGTTC
-TTGCACAGTAAAGGAGTCCTGACCCTGTCATTCTCTTGTTAAATCCACAGGCACTTGATGTGTGGCAGCACGTGTGCTG
CTTGAATTAGCACACCGGACTGACTCTGGAGACGAAGCATGGTGTAGTAGGCAAGTCGATTTGCTGACATAGCGTCGACG
TCTTTCTAATGCTTCTGTTCTGTTTAGCTACTA---CTATATGTTGCGTGTTTTGGTTTCTACTTCCAATCCAATCCTAC
AGCGTCAGGCGCTAGGATCGACTATTCGGATTGTTGGTGTAATGTTATGTAAGCAAGGTTGTGGAACAGCTAGATACAGT
CTAGGATCAACTATATGTTGCTTGTTTATGGTTAGCATCTCGTAGGAATTCACTTCGATTCACAGCAATTGGTG-GCAGA
TTGAAAAGTACAAGCACAAGTGTGCTAAAAATCAAACAGCAACAAGGGAGAGGGAATGCCGCCGGTGCCTGTTCCTGCTG
AATGTCTT-GCTAGCTGCCTCCTTTTCTGTGTTTGTAGCCATTGCTGAAGT-----------------------------
--------------------------------------------------------------------------------
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------
>chr3A_1007
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGAGCAG
GTTCATCAAGTGCGTGGCCGTGGGCGACGGCGCCGTGGGCAAGACCTGCATGCTCATCTGCTACACCTGCAACAAGTTCC
CCACCGTTGAGTA-----CCACCCCTC--------------------------------TCCCTCTCCCTCTCCCTTCTT
GGCCTGGCTAGCTT------------------------------------------------GATCTGGTTTCATTCTGA
CGAAATGGCTGCTCCTGTTGATGCGGGGGTGGATG-----------------------------CAGGACTACATCCCCA
CCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGCAGCATCGTCAACCTCGGCCTCTGGGACACCGCAGGTCGG
GCTCCCGTCCGGCTCCCTCTCTTTTTCCTCCACTCCCCGTACCCGATGCGGAG---------------------------
----------------------------TGTTTTCCTTCCCGTAATGCCATGTAATGGTGGTCCGTCCTGGGTTGCAGGT
CAGGAGGATTACAGCAGGCTGAGGCCTCTGAGCTACAGGGGAGCCGATGTCTTCATCCTCTCCTTCTCCCTCACCAGCAG
AGCAAGCTATGAGAATGTGCACAAGAAGGTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>SNPs
SSSSSSSSSSSSSSSSS--S-----S-----------------S---S----S---------S------SS-S-------
S-S-S-S-SSSSSS--------S---------SSS------S-----------S--SS--SSSSSSS-SSSSS-------
---S-----------------------------------------------SS-------S-------------------
---S------SSSSSSSSS--------------S--------S----S---S--SSS-----S--------SSSS-----
------SSSSSSSS-SSSS--------SS--------S-S------------------SS-S----------------SS
SS--SS-SSSSSSSS-SS-SSSSSSSS-SSSSSSSSSS---S-SSSSS-SSSS-SSSS-S-SSSS-SSS-----------
------------------------------------SSSS--------S-------------------------------
------------------------------------S--S----------------------------------SSSSSS
--------------------------------------------------------------------------------
SS-SSS---------------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------SSSSSSSSSSSS--
-----------------S----------------S-------------------------------------------SS
SSSSSSS--------------S----------------------SSSS----------------------------S-S-
-S-----------------------------S--SSS-SS---SSSS---------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--S-------S------------------------------S-----
---------------------------------------------------------------------S----------
-------------------------------------------------------------S------------------
-S----------------------------------------------------S-S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--SSSSS---------------------------------
----------------------------------------------------------S---------------S-----
-------------------------------------------------------------------S------------
---------S--------------SS----S-SSSSS----S-----S----S----S-S---S-------------S--
------------------S-SSS--S-SS----S----------------------------------------------
------------------------------------S------S------------------------S-S---------
-------------------------------SSS-----------------------------------------S----
-------S-----S-----S--------------------------S-------S-------------------------
------S--S-----------S----------------------------SSSS--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--------------------------S-
------------SSSSS----------------------S-------------------------------S--------
--------------------S--------------------------------------SSSSSSSSSSSSSSS------
-----------------------------------------------------------------S--S----------S
S----S--SS-S-------------S------------------------------------------------------
-S-------------S----------------------------------------------------------------
---------------S-------------------------------------S-------------S-SS-SSSSSSSS
SS--------------------------------S----------------------------S----S-----------
----------------------------------------------------------------------S-S-S-----
-------------S-SS---------------S-----S--------S-----------S-------S------------
--------S------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------S---S-----------SSSS-SS------------------SSSS-----SSSSS-------
-----------------------------S--------------S------S-S-SSSS-----S------S--S-----
--------------------SS------S--SSS-----S-SSSSSSSS-SSS-S-SS-------S--------------
SSSSSS--------------------S--S-----------------------S-SSS-S----------------S---
---S-----S----S-S-S---SS---------------------------S------------S-------SSSSSSSS
SSSSSS
>forward_92
------------------------------------------------------------------------CTGGAGAG
CACTAGCAGTGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_1430
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTACATCCCCA
CCGTGTTCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTCGGCCGACTGTCTGTTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2108
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CGTTGTCCAGATCTGCGTGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_2026
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GAGGAACCTGCACCCAACAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_3522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GCTACTCGGGGACCCTATGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
