>input_sequence_46192
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-----------------------------------------------CG--------------------TCTCGCCGAGA
TTATATATAGGCCCGCGAGCTCCACGAAGATCCCCCGTCATTGCGGCGGCGTCCAATCCAAATCCAAAGAGAACTCATGA
GAGGGGATCGATCGGCCATGAGGGTCACCCGAGGTATGCACCTGGAGGCCGAGGTCGCCCGGG-----------------
-ACGTGTGGCGCGCCGGCGAGGTGGTCTGGGGCAACGGACACTCGTACGTCCTGCGGTGGTTCGACGGCGGCCCAGACTC
CGGGCGCATCCCGAGGGCGGGCGTCCGGCCGCTCCCGGATCCAGCCGTCAAGCTGCCGGCGGACCTCGCCGCCGGCGACG
ACGTTGATGTGTTCCACAGCAACCTGTGGAAGCGCGCCAAGGTCGTGGGCGCCGCCGGCCACGGTCAGTTCGAGGTCAAG
ATCGCCGACTCGACCGAGGTCGTTGAGGCCGACCTGAGCGTGCTACGGCCCTGTATGGTGTATGGCGGAGGGGAGAAAGG
CTGGGCTGTGATCCAGAAGGTAACGCCATCGTTGTCCCCTTCATCTTCTCCCCACTCGTGGCCTCCTC---CTCTTAGAT
TCAGTA----ACGTCTGCAGATCC-TTGTTTCGCTGACGGCGTCTTGCCCTGTTTCTTCTTCTTTCTCTTCGCACCAGGG
TGACAAAATCCCCGTCGCAAGCGCCCAGCCATGGCGCCCCGTCGCTGGCAAGAACATCAAAAGCAAAGCCAATATCAAT-
-----GGAGGCGGCAAGTTCGCCGCGCATGCCACCAATCTCAATCTGGGCGGCAAGACGAAGCG---GAGCAACTACG--
----------CGGTGGACGCCGACA---TTGTCCAGGACGTCAAGAGATTTCAGG---------G---CAACGTCTTCTT
GGCCAAGAGAGAACCCGCAGCAAGGTACGGTGACAGCAACATAGAGGTGATGGATGTAC---------ACCCAAGCCATT
ACCTC------AAGAAACGGGAGCAGGAGACCAGCAAC------AAACCC---AACGATGAAGAAATTGATGTGGTCGGA
GGAGGAACGGA---------CAGCGACAGCGACGATGATTCCAAC---AGTAGCAAGTCTGATCCA---TCGTCATCTGC
TGACAGCAGTGACGGAGAC---AGCAGCAGCAGCAGTGGCGGAAGCAACAGCAACGGC------GGC---CGCGCAGTTC
CTGTCACCGGCGAGCATTGCCAAGAAAATCAAGAAGCTGCGACTCCAAGCTGCGAG---------GAAGAAGAGGAGCAA
GATTCCGAGGAGAGGACAGAGTCCCATGCCAGCGCGGGAATGCACCACCGCCTGGCCGATGAGGAACAG------GTGGT
GATGGTGAAGCAAGATCAGCAG---GTAGAGGAGCATGATCA---------CCGCGTCCATGGCCTGGAGCTGGAGGCCT
ACGTGAGCGTCATGAAGGCCTTCTACTTCACGGGGCCGCTGACCTGGGCCAAGGAGGAGCTGCTGTCCGACCTCCGCCTG
CAGCTCCACGTCTCCAGCGACGAGCACCTGCGAGCGATATGGCGTCTCAAGGGGAAGAAGTAAAGAAACTGCAGGCAGGC
GTTTCAGTTCAACGGCGGCTATTGCTGATTGCTCTAGTTTGTAACCTGTCAATCTGTGATAG---AT---TACTGTACGT
AGTTGGGAGTGTCAAGTCAGTCATCAGTTGACTGGATTTGATTTGGATCTCAGCCAAAGTTTGATTATGATCATTTTGGG
TCCCAGTCAAATTTTGATTTTG----------------------------------------------------------
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>chr1A_1_TraesCS1A01G043500
AATTTGGGATGTTATAAGCAAGCAATGTGGAGGCACGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCCGCGGTC
GGCTCCGATTAGGGTTTTGGGAGGGGAGGGGGGCGTCGACGCCGAGGATTTATACGGGTCCAATAGGGGGTAGAGGAGA-
GGAAATAGGATTCAGGGAGGATTCGAGTGATTGTTCGAATTGGAGGAGAAAAGGGCATTTTTTTAGGCTTAACCCCTCAA
TTTTTTGACAAGTTTCTTTAGGGGTGGTTTAGTCAGGGTACAACTCCTCAAAAGGTTCCTTCT-GAGAAGTTACACGATT
GGTTTCCAGGGATAGAGACTAGAGATGCCCTAAGTTTGGGCCGCCGCCGGCGGTTCCTCCCGCCGAACCCTACTCCGCTC
TGGATCCTCCCCAACACCATCCCGCCGCCCCTCCCGCCGGCGCGATCAGACCAATCCATGGTCGG----TTAGATTCCGC
GTGAGGTTTTCGCCGGGGGTCGTC-TTGGATTCCGCGTCGGTTCCGAGTCGATCGAGGAGCCCTTTCCATATCCAACACG
CGGCAACTCGATCGATCGAGTTCGCGTCCCCCAAGAACTCGGCGCCCCG--------------------TCTCGCCGAGA
TTATATATAGGCCCGCGAGCTCCACGAAGATCCCCCGTCATTGCGGCGGCGTCCAATCCAAATCCAAAGAGAACTCATGA
GAGGGGATCGATCGGCCATGAGGGTCACCCGAGGTATGCACCTGGAGGCCGAGGTCGCCCGGG-----------------
-ACGTGTGGCGCGCCGGCGAGGTGGTCTGGGGCAACGGACACTCGTACGTCCTGCGGTGGTTCGACGGCGGCCCAGACTC
CGGGCGCATCCCGAGGGCGGGCGTCCGGCCGCTCCCGGATCCAGCCGTCAAGCTGCCGGCGGACCTCGCCGCCGGCGACG
ACGTTGATGTGTTCCACAGCAACCTGTGGAAGCGCGCCAAGGTCGTGGGCGCCGCCGGCCACGGTCAGTTCGAGGTCAAG
ATCGCCGACTCGACCGAGGTCGTTGAGGCCGACCTGAGCGTGCTACGGCCCTGTATGGTGTATGGCGGAGGGGAGAAAGG
CTGGGCTGTGATCCAGAAGGTAACGCCATCGTTGTCCCCTTCATCTTCTCCCCACTCGTGGCCTCCTC---CTCTTAGAT
TCAGTA----ACGTCTGCAGATCC-TTGTTTCGCTGACGGCGTCTTGCCCTGTTTCTTCTTCTTTCTCTTCGCACCAGGG
TGACAAAATCCCCGTCGCAAGCGCCCAGCCATGGCGCCCCGTCGCTGGCAAGAACATCAAAAGCAAAGCCAATATCAAT-
-----GGAGGCGGCAAGTTCGCCGCGCATGCCACCAATCTCAATCTGGGCGGCAAGACGAAGCG---GAGCAACTACG--
----------CGGTGGACGCCGACA---TTGTCCAGGACGTCAAGAGATTTCAGG---------G---CAACGTCTTCTT
GGCCAAGAGAGAACCCGCAGCAAGGTACGGTGACAGCAACATAGAGGTGATGGATGTAC---------ACCCAAGCCATT
ACCTC------AAGAAACGGGAGCAGGAGACCAGCAAC------AAACCC---AACGATGAAGAAATTGATGTGGTCGGA
GGAGGAACGGA---------CAGCGACAGCGACGATGATTCCAAC---AGTAGCAAGTCTGATCCA---TCGTCATCTGC
TGACAGCAGTGACGGAGAC---AGCAGCAGCAGCAGTGGCGGAAGCAACAGCAACGGC------GGC---CGCGCAGTTC
CTGTCACCGGCGAGCATTGCCAAGAAAATCAAGAAGCTGCGACTCCAAGCTGCGAG---------GAAGAAGAGGAGCAA
GATTCCGAGGAGAGGACAGAGTCCCATGCCAGCGCGGGAATGCACCACCGCCTGGCCGATGAGGAACAG------GTGGT
GATGGTGAAGCAAGATCAGCAG---GTAGAGGAGCATGATCA---------CCGCGTCCATGGCCTGGAGCTGGAGGCCT
ACGTGAGCGTCATGAAGGCCTTCTACTTCACGGGGCCGCTGACCTGGGCCAAGGAGGAGCTGCTGTCCGACCTCCGCCTG
CAGCTCCACGTCTCCAGCGACGAGCACCTGCGAGCGATATGGCGTCTCAAGGGGAAGAAGTAAAGAAACTGCAGGCAGGC
GTTTCAGTTCAACGGCGGCTATTGCTGATTGCTCTAGTTTGTAACCTGTCAATCTGTGATAG---AT---TACTGTACGT
AGTTGGGAGTGTCAAGTCAGTCATCAGTTGACTGGATTTGATTTGGATCTCAGCCAAAGTTTGATTATGATCATTTTGGG
TCCCAGTCAAATTTTGATTTTGAAATTTGGGCCTGGATCATCG-------------------------------------
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----------------------------------------------------------------GTTCCAACTTCCAAAA
TTATTGCTGATTGCTAATTTGTCACCGGTGATAATTCATTGTAGTTGGGACTTGGGAGTGTCTAATGATC----ATTGGA
CTGAAATTGATTTGGGTCTCAGTCAAATTTTGAT-----TTTGATTGCTAACTTGTAACCTGTCAATCTGTGAGAGATTA
GTGTACGTAGTTGAGAGTGTCAGTCATCAGTTGACTGAATTTGATTTGGATCTCAGTGGAAGTTTGATTTTGATTTTGGG
TCTCAGTCAAATTTTGATTTTGAATTTGGGTCCCAGTCGTAGGTTCCAACTTCCAAACTTATTGCTGATTGCTAATCTGT
CACCGGTGATAGATCATTGTAGTTGGAGTGTCTAACGATCATTACACTGAAATTGATTTGGGTCTCAAGTCAAATTTTGA
TTTTCATTGCTAGTTTGTCACCTGTGAATCTGTGATAGATTACTGTAGTTGGGAGTTTCAGTCATCAGTTGACTGAATTT
GATTTGGATCTCCGTCAAAGTTTGATTTTGATCATTTTGGGCCCCATTCAAAATTTGATTTTGAATTTGGGTCTCAGTCA
TCAGTTCCAACTTCCAAAC---A--CTTAGATTCTGTGT-GTTTGGGATAGTCCTGACGGTGGACTCAACCACTGAAATC
TGAAAAATGAAAAACCT--CTGCTCTGTTTTTATAAGCAGCT-CTCCAAATTGGAAGGCTCCAAATAATTGACAAAATCC
AAAAGTCT-----CCACAAATATGAATGGAAAACTAAAGAAAAGATTAGTAGACCAGCAAGAAAATAGTG-AAAAATAGT
GGAAACTGAAGATTCATCTGCTGATGGAGAAAAGAGCTGACATATATTGTGATGTGAGTATGTGACAAAGACCTGACGTA
TATTGTGATGCAAAATTCTTCAATAAAGAGAATGATCAAAAGATAAAGACCGAAGAAAGAGAATGAAAAACAAGCCCATG
ACAAGGGAAAAAGAATGAGAAAATCAA-----------------------------------------------------
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>chr1D_474
CGCGAC--------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
GGCTCGAGTTAGGGTTTGGGGAGGGGAGGGGGGCGTCGACGCCGAGGATTTATACGGGTCCAATCGGGGCAAGAGGAGGG
GGAAATAGGATTTAGGGAGGATTCGAGTGATTGTTCGAATTGGAGTAGAAAAGGGCATCTTTTGAGGTTTAACCCCTCAA
TTTTTTGACAAGTTTCTTTAGGGGTGGTTTAGTCAGGGTACAACTCCTCAAAAGGTTCCTTCTTGAGAAGTTAAACGATT
GGTTTCCAGGGATAGAGACTAGAGATGCCCTAAGTTTGGGCCGCCGCCGGCGGTTCCTTCCGCCGAACCCTACTCCGCTC
CGGATCCTCCCCAACACCATCCCGCCGCCCCTCCCGCCGGCGCAC--------ATCCATGGTCGGTTAATTAGATTCCGC
GTGAGGTTTTCGCCGGGGGTCGGCGTTGGATTCCGCGTCGGTTCCGAGTCGATCGAGGAGCCCTTTCCATATCGAACACG
CCGCAACTCGATCGGCCGAGTTCGCGTCCCCCAAGAACTCGGCGTCCCG--------------------TCTCGCCGAGA
TTATATATAGGGCCGCGAGCTCCACGAA-ATCCCCCGTGATTTCGGCGGCG-----TCCAAATCCAAAGAGAACTCATGA
GGGGGGATCGATCGGCCATGAGGGTCACCCGAGGTATGCACCTGGAGGCGAAGATGGGCGAGA-----------------
-ACGCGTGGCGCGCCGGCGAGGTGGTCTGGGGCAACGGACACTCGTACGTCCTGCGGTGGTTCGATGGCGGCCCAGACTC
TGAGCGCATCCGGAGGACGGATGTCCGGCCGCTCCCGGATCCCGCCGTCAAGCTGCCGGCGGACCTTGCCACCGGCGACG
AGGTTGAGGTGTTTCACAGCAACCTGTGGAAGCGCGCCGTGGTCGTGGGAGCCGCCGGCCACGGTCAGTTTGATGTCAAG
ATCGCCCGCTCGACCGAGGTTCTTACGGCGGACACGAGCGTGCTGCGGCCCCTTATGGCGTATCGGGGAGGGGAGAAAGG
CTGGGTCTTGATCCACAAGGTAACGCCATCGCCGTCCCCTTCATCTTTTCCTCAT-------------------------
------------GTCTGCAGATTTTTTCTTTTGCTGACGGCGTCTTGCCCTGTTTCTCAACCTTCTTCCTCGCTACAGGA
TAACGAAATCCCCGCCGAGAGCGCCGTGCCATGGCGCCCCGTGGCCGTTAAGAACATCAAAAGCAAAGCCAATGACAAT-
-----GGAGGCGGCAAGTTCGCCGCGCATTCCACCAATCTGGGTCT---GGGCAAGACGAAGAG---GAGCAATTACG--
----------CGGTGGACGCCGACA---TTGTCAGGGATGTCAAGAGATTTCAGG---------GCAACAACGTCTTCTT
GGCCAAGAGAGAACCCGCAGCAAGGTACCACGACAACAACATAGAGGTGATGGATGTAC---------ACCCAAGCCATT
ACCTC------AAGAAACGGGAGCAGGAGACGAGCAATCATACTAAACCC---AACGATGAGGAAATTGATGTGATCGGA
GGAGGAACGGA---------CAGCGACAACGACGACGATTCCAAC---AGTAGCAAGTCTGATCCA---TCGTCGTCGGA
CGGAGA------------------CAGCAGCAGCAGTGGGGGAAGCAACAGCAACAGCAACGCCGGCGCTCGTGCAGTTC
CCCCGACCGCCGAGCATTGCCAAGAAAATCAAGAAGTC---------CAGTCGCCGCCGAGCTGCAAGGAAGAGGAGCAA
GATTCTGAGGAGAGGACCGAGTCCCGTGGCAGCGCGAGAATGCGCCACCGACCGGCGGACGAGGAAGAG------G----
--------AACAGAATGAGCAAGAAGTAGAGGAGCATGATCA---------CCGCGTCCATGGCCTGGAGCTGGAGGCCT
ACGTGAGCGTCATGAAGGCCTTCTACTTCACGGGACCGCTGACCTGGGCCAAGGAGGAGCTGCTGTCCGACCTCCGCCTG
CAGCTCCACGTCTCCAGCGACGAGCACCTGCAGGCGATATGGCGTCTCAAGGGGAAGAAGTAAAAAAACC----GCAGGC
GTTTCAGTTCAACGGCGGGTATTGCTGATTGCTGTAGTTTGTAACCTGTCAATCTGTGATAGTAGAT---TACTGTACGT
AGTTGGGAGTGTCAAGTCAGTCATCAGTTGACTGAATTTGATTTGGATCTCAGTCAAAGTTTGATTTTGATCATTTTGGG
TCTTAATCAAATTTTGATTCTGAATTTGGGTCTCAGTC----ATCAGTTCCAACTTAATTCCAAACTTATTGGC------
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-------------------TGATTGATAGTTTGTCACCTGTGAATCTGTGATGCATTGCTCTAG----------------
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-------TGATTGCTAGTTTGTCACCGGTGATA---CATTGTAG-------TTGGGAGTGTCTAATGATC----ATTAGA
CCGAGTTAGATTTGGGTCTCAGTCAAATTTTGAT-----TTTG-------------------------------------
------------------------------------------------------------------------------GG
TCTCAGCCAAATTTTGAT--------------------------------------------------------------
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-----------------------------------------------------------TTTTAATTTGGCTCTCAGTCA
TCAGTTCCAACTTCCAAACTTAA--CTTAGATTCTGTGT-GTTTGGGATATAGGTTGA--------CAACCACTGAAAAC
TGAGAAGCCACTGGTCTCGCTGCTCTGTTTATATGAAGAGAAGCACCAAATCAGAAGACCGCAAAAAACCAAACAAAAAC
GTGAATTGAAGTCCCACAAAAATGTAATGAAAACTAAAGAAAAGATTAATAAACCACAAAGCAGATACTG-AAAAATAGT
GGAAATTGAAA---------CTGATGGGGAAAAGAGCTGACATATACTTGTAATAAATGAGTACGACAAGGA-TGACATA
TATTGTGATG----------------------------------------------------------------------
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>chr1B_547
GGGGAGAGGA----------------------------------------------------------------------
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------------------------------------------------------------------------------GG
GGAAATAGGATTTAGGGAGGACTCGAGTGATTGTCCGAATTGGAGCAGAAAAGGGCATCTTTTGAGGCTTAACCCCTCAA
TTTTTTGAGAAGTTTCTTTAGGGGTGGTTTAGTCAGGGTACAACTCCTCAAAAGGTTCCTTATTGAGAAGTTAAACGATT
GGTTTCCAGGGATAGAGACTAGAGATGCCCTAAGTTTGGGCCGCCGCCGGCGGTTCCTTCCGCCGAACCCTACTCCGC--
----TCCTTCCCAACACCATCCCGCCG------------GCGCGAGCAGGTTAATCCATGGTCGGTTAATTAGATTCCGC
GTGAGGTTTTCGTCGGGGGTCGT-GTTGGATTCCGCGTCGGTTCCGAGTCGATCGAGGAGCCCTTTCCATATCGAACACG
CCGCAACTCGATCGGCCGAGTTCGCGTCGCCCAAGAACTCGGCGCCCCGACTCGCATCGGATCGATCCCTCTCGCCGAGA
TTATATATACGGCCGCGAGCTCCAGGAA-ATCCCCCGTGATTGCGGCGGCGCA-----CAAATCCAGAGAGAACTCATGA
GAGGGGATCGATCGGCCATGAGGGTCACCCGAGGTATGCACCTGGAGGCGAAGATCTTCATCGACGCGGCGGGTGAGGTG
TACGCGTGGCGTGCCGGCGAGGTGATCTGGGGCAACGGACACTCGTACGTGCTGCGGTGGTTCGATGGCGGCCCAGACTC
CGAGCGCATCCGGAGGACGGACGTCCGGCCGCTTCCGGATCCATCCGTCAAGCTGCCGGCGGACCTTGCCGCCGGCGACT
CCGTTGAGGTGTTGCACAGCAACCTGTGGAAGCGCGCCAAGGTCGTGGGCGCCGCCGGCCACGGTCAGTTCGAGGTCAAG
ATCGCCGGCTCGACCGAGGTCCTTGCGGCGGACCTGAGCGTGCTACGCCCCCGTATGGCATACGAGGGAGGGGAGAAAGG
CTGGGTTGTCATTCAGAAGGTAACGCCATCGTCGTCCCCTTCATCTTCTCCACACGCGCGCGCGGCCTCCTCTCTTAGAT
TCAGTTACGTACGTCTGCAGATTCTTGTTTTCACTGACGGCGTCTTGCCCT----CTTCTTCTTTCTCTTCGCTCCAGGG
TGAGAAAATCCCCGTCGAGAGCGCCCAGCCATGGCGCCCCGTCGCCGGCAAGAACATCAAAAGCAAAGCCAATATCAAT-
-----GGAGGCGGCAAGTTCGCCGCGCATGCCACCAATCTCAATCT---GGGCAAGACAAAGAG---GAGCAACTACG--
----------CGGTGGACGCCGACA---TAGTCAGGGACGTCAAGAGATTTCAGG---------G---CAACGTCTTCTT
GGCCAAGAGAGAGCCCGCAGCAAGGTACCATGACAACAACATAGAGGTGATGGATGAAC---------ACCCAAGCCATT
ACCTC------AAGAAACGGGAGCAGGAGACTAGCAATCATGATAAACCC---AACAATGAAGAAATTGACGTGGTCGGA
GGAGGAACGGA---------CAGCGACAGCGACGACGATTCCAAC---AGTAGCAAGTCTGATCCGTCGTCGTCGTCGGA
CGGAGA------------------CAGCAGCAGCAGTGGGGGAAGCAACAGCAACAGCAACGGCGGCGCTCGTGCAGTTC
CCCCGACCGCCGAGCATTGCCAAGAAAATCAAGAAGT---------GCAGTCGCCGCCGAGCTGCAAGGAAGAGGAGCAA
GATTCCGAGGAGAGGACCGAGTCCCGTGGCAGCGCGGGAATGCGCCACCGCCCGGCGGC---GGACGAGGAAGAGG----
--------AGCAGAATGAGCAAGTG---GAGGAGCATGATCA---------CCGCGTCCATGGCCTGGAGCTGGAGGCCT
ACGTGAGCGTCATGAAGGCCTTCTACTTCACGGGGCCGCTGACCTGGGCCAAGGAGGAGCTGCTGTCCGACCTCCGCCTG
CAGCTCCACGTCTCCAGCGACGAGCACCTGCAGGCGATTTGGCGTCTCAAGGGGAAGAAGTAAAAAAAACT---GCAGGC
GTTTCAATTCAACGGCGGCTATTGCTGATTGCTGTAGTTTGTAACCTGTCAATCTGTGATAG---ATTACTACTGTACGT
AGTTGTGAGTGTCAAGTCAGTCATCAGTTGACTGAATTTGATTTGGATCTCAGTCAAAGTTTGATTTTGATT--------
---CAGTCAAATTTTGATTCTGAATTTGGGTCCCAGCCATCGATCAGTTCCAGCTTAATTTCAAACTTATTGCCGATTGC
TATATAATTTGTCACCGGTGATATATAGATCATTGTAGTTGGGAGTGTCTAATGATCATTAGACTGAAATTGATTTGGGT
CTCAGTCAAATTGTGATTTTGATTGCTAGTTTGTCACCCGTGAATCTGTGATAGATTACTATAGTTGGGAGTGTCAGTCA
TCAGTTGACTGAATTTGATTTGGATCTCAGTCATATTTTGACTTTGATTTTGGGTCTCTGTCATGTTTTAACTTCCAAAC
TTATTATTGATTGCTAGTTTGTCACCGGTGATAGATCATTGTAG-------TTGGGAGTGTCTAATGTAAACTTATTAGA
CCAAGTTAGATTTGGGTCTCAATAAAATTTTGATTTTGATTTG-------------------------------------
------------------------------------------------------------------------------GA
TCTCAGCCAAATTTTGAT--------------------------------------------------------------
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-----------------------------------------------------------TTTGAATTTGGCTCTCACTCA
TCAGTTCCAACTTCCAAACTTATATCTTAGATTCTGTGGCGTTTGGGATAGCCCTGACGGTGGACTCAACCACTGAGATC
---------------------------TTTATATTAGCAGCT-CACCAAATTGGAAGGCTCCAAATAATAGACAAAATCC
AAAAGTCT-----CCACAAAAATGTATGGAAAACTAAAGAAAAGATTAGTAGAGCAGCAAGAAAATAGTGAAAAAATAGT
GGAAACTGAAGATTCATCTGCTGATGGAGAAGATAGTTGACATATATTGTGATGTGAGTATGTGACAAAGACCTGAC--A
TATTGTGATGCAAAATTCTTCAATAAAGAGAATGATCAAAAGATAAAGACCGAAGAAAGAGAATGAAAAACAAACCCATG
ACAAGGGAAAAAGAATGAGAAAATCAACTGAAGGTCTGATGACTGGTAACATAAGTAGACTGTCTAGGCTGATACACTGC
ATCCTACCATAACTACAGCTGAATAATACACATCCAATCCAATCCTATTAACTTAGAAATTTATCTTCAAGTCAATAGAG
CAAGTTGGGTTAAAAAATAGAGCCATGGGTCATAGAAAATCATGAAAGACAGATACTCCGATACAAGTGATGGACTGAAC
AACGACTGAAGTAATAAACTGATGGAATGAACAAAATATTCGAGCATTGACTAGAACATTTCCAGTAAATCAGAAGTTCA
AAAAGATTATCAAATTCATGATGCAAACATGAAAAACATCTATCAATCAAGAGCAACGAGTGGGTCAAGATTTGTGCTAT
TTAAACATAATTGGCGCAATTTGCAAATATTACAAATGATTTGCATGGCATTGTTTAGTTTCTCAATATTTACTGCATTG
ACAATACATGCACAGATGTTATTACAGCCTTACAGGAAAAAAAGCAGAAAATCTCATTCACTTACAAGTTACACCAGGTT
AAGAAAAGTTAGGGCCTCCAGACCGACGCCACTTACTGAGTTGCTGAGCTGATAACATCCTCAGAACCCAACATGCACAG
GACTGGCTAGCACATATTGTCTCAACTTGTGTCTCTAAAACTACAAAGATCTGATGGAGTTCCTCAGATTCTCAGCAACT
CTGGTATGTCCTAGACAGTATGACTTATTCAGGTATTGACGAAAGAACACCGGTATTTTGTCAACCAATTGAAAGGTCAG
AAAGGAAAACAATCAGACAAAGCATACCATATAATCATTTTGTTCTTTAGTCTACCTACATTTTTCTCGGCTAATGTATT
GATGCTACCACAAACATGAGCAAAAATGGCCTTTAGCTTCAAGAAAAGGGATTAATGCCGCAAAGTGCAATATGCAGGTG
AGCATCAGCAAAGTGAGGAGCATGAGCACCGCATCCATGGTCTGGAGCTGGAGGCCTACGTGAGCGTCATCAAGGCGTTC
CACGCCAAGGGGCCGCTGACCTGGGCCAGGCAGGAGCTGCTGTCCGACCTCCGCCTGCACCTCCACGTCTCCGGCGACGA
CCACCTGCAGCTGCAGGTGATATGCCGTCTCAACAGCAAGAAGTAAACTGCAGCCGTTTCAACTGCAGTCTGTAACCAGT
GAATCTGCGACAGATTACTGTAGTTGGGAGTGTCAGTCAGTCATCAGTTGACTGGATTTGATTTTGATCTCAGTCAAAGC
TTGATGTTGATTTTGGGTCTCGGTCAAATTTTGATTCTGAACTTGGGTCTCACTCATCAGTTCCAACTTCCAAACTTATT
GGCTGATTGCTAGTTTGTCACCGGTGATAGATCATTGTAGTTGGGCGTGTCTAACGATCATTAGACTGAATTTGATTTGG
GTCTCAGTCAAATTTTGATTTTGATTATTGTAGGCCTGCTCTGGTTCCAAATCCCAAACTTA
>chr3A_1162
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------TGGCGCGCCGGCGAGGTGGTCTGGGGCAACGGCCACTCCTACGTCATGCGCTGGTTCGACGGCGGCCCGGACTC
GGGCCGCATCCTGAGGAAGTTCGTCCGCCCGCTCCCGGACCCCGCCGTCAAGCTCCCCGCGGACCTCGTCCCCGGCGACA
ACGTCGAGGTGCTGGACGGCAGCCTGTGGAAGTGGGCCGAGGTCGTGGCCGCCGCCGGCGAC---CGGTTCGAGGTCAAG
ATCGTCGGCTCGTCCCAGGTCCTCACGGCGGACCGCGGCGCGCTCCGGCCCCGGCAGGTGTAC------GGGGAGAAGGG
CTGGGTCGTGCTCCACAAGGGC----------------------------------------------------------
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-AACAAGATCCCCGTCGAGAGTGTCGTGCCGTCGCGCCCCATCCCCGGCAAGAACATCAACGGCAAGGCCAAAAATGGCA
ACCTCGGAGGCGGCAAGTACGCCGATCCCCATGCCG---TCAAGCTCGGGGGCAAGACGACGAT---GAAGAGGAGCAGC
CCCACGGTGACGGCGGACGGCGACGACGTAGTCCCGGATGCCAAGAGGTTTCATTTTCATAGTAG---CAGCAAGTTGTT
CCCCAAGGAAGCACCGGATGGCAAGAGGTTGCATAGTAGCAGCAAGTTGTTCCCCAAGGATGCAAGATACCCAAGCCATT
GTTATCTGATGAAGAAACGGCGGCAGGAGACGAGCAATGATAAATCCTACTATCATGAAGAGTCATGTGATGCGGTTGGA
GGAACAGTAAGAGATAGCAGCAGCGACACCGACGGCGGTTCTAGTAGTAGTAGCACGTCTGATCGATCGTCGTCATCGGC
GGATGGCAGCGAGGGAGACAATAGCAGCAGCAGCAGCAGCGGAAGCAACAGCAACGGC------GGAGTTCCTGAAGTTC
CCGCCGCCGGCGAGCGTTGCCAAGAAAATCGAGAAGCGTCGATCCCGCCGCCGCCGCTGAGCCGCGAGGAAGAGGAGCAA
GATTCTTCCGACGACGGT------CGCGCCAGCGTGACAATGCACCGCCGCCCGGCGGACGTGGACGAGGAAGAGGCGGT
GGCGATGAAACGAAATCGGCAAGCGGCAGAGGGACATCAGGAGGACCACGGCCGCGTCCATGGCCTGGAGCTGGAGGCGT
ACGTGAGCGTGATGAAGGCGTTCCGCGCCACGGGGCCGCTGAGCTGGGCCAAGGAGGAGCTGCTGTCCGACCTCCGCCTG
CACCTCCACGTCTCCGGCGACGAGCACCTGCAGC----------------------------------------------
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>chr3D_1162
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------TGGCGCGCCGGCGAGGTGGTCTGGGGCAACGGCCACTCCTACGTCATGCGCTGGTTCGACGGCGGCTCCGACTC
GGGCCGCATCCTGAGGAAGTTCGTCCGCCCGCTCCCGGACCCCGCCGTCAAGCTCCCCGCGGACCTCGTCCCCGGCGACA
ACGTCGAGGTGCTGGACGGCAGCCTGTGGAAGTGGGCCGAGGTCGTGGCCGCCGCCGCCGAC---CGGTTCGAGGTCAAG
ATCGTCGGCTCTTCCCAGGTCCTCACGGCGGACCGCAGCGCGCTCCGGCCCCGGCAGGTGTAC------GGGGAGAAGGG
CTGGGTCGTGCTCCACAAGGGC----------------------------------------------------------
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-AACAAGATCCCCGTCGAGAGCGTCGTGCCGTCGCGCCCCATCCCCGGCAAGAACATCAAGCTTAAGGCCAACAATGGCA
ACCTCGGAGGCGGCAAGTTCGCCGCGCCCCATGCCG---TCAAGCTCGGGGGCACGACGACGACGACGAAGAGGAGCAGC
CACACGGTGACGGTGGACGGCGACG---TAGCCCCGGATGCCAAGAGGTTTCATTTTCATAGTAG---CAGCAAGTTGTT
CCCCAAGGAAGCACCGGATGGCAACAGGTTGCATAGTAGCATCAAGTTGTTCCCCAAGGATGCAAGATACCCAAGCCATT
GTTATCTGATGAAGAAACGGCGGCAAGAGACGAGCAATGATGATAAATCCTATAACGAAGAGTCGTGTGATGCGGTCGGA
GGAACAGCAAGAGA---CAGCAGCGACACCGACGACGGTTCTAGTAGTAGTAGCACGTCTGATCGATCGTCGTCATCGGC
GGATGGCAGCGACGGAGAC---AGCAGCAGCAGCAGCAGCGGAAGCAACAGCAACGGA------GGCGTTCCTGAAGTTC
CCGCCGCCGGCGAGCGTTGCCAAGAAAATCGAGAGGCGTCGATCCCGCCGCCGCCGCGGAGCCGCGAGGAAGAGGAACAC
GATTCTTCCGACG---GT------CGTGCCAGCGCGACAATGCAGCACCGCCCGGCGGACGAGGACGAGGAAGAGGCGGT
GGCGATGAAACGAAATCGGCAAGCGGCAGAGGTACAT---GAGGACCACGGCCGCGTCCATGGTCTGGAGCTGGAGGCGT
ACGTGAGCGTGATGAAGGCGTTCCGCGCCACGGGGCCGCTGAGCTGGGCCAGGGAGGAGCTGCTGTCCGACCTCCGCCTG
CACCTCCACGTCTCCGGCGACGAGCACCTGCAGC----------------------------------------------
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>SNPs
SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----SSS---------S----------------------------------------------S----SS-------S-
------------S--------------------------------S------------S----S----------------
-------------------------------------------------------------------------S------
----------------------------------------------------------S---------------------
S--------------------------------------------S---SSS----------------------------
-------------------------------------------------------------------------S------
-S------------SS----------------------------------------------------------------
-----------S----------------S---------S------------SSSSS------------------------
-------------------------------------------------SS--S---S-SS-------------------
----S---------------------------------------------------------------------------
-----------S----S---S-----------------------------------------------------------
-------S-----S------------------------------------------------------------------
-------S-------------S---S---S---------------------S-------------S--------------
-----S--------------------------S------------------S---S--S-SS-SS-SS------------
-----S----------------S----S---------------------------------------------S------
-----------------SS--------------------------S----------------------------------
----------------------------------------------S--S------------S-----------------
----------------------------------S---------------------------------------------
----------------------------SS--------------------------------------------------
-------------------------------S-----S------------------------------------------
-----------------------------------S-----------------------------------------S--
S--SS----S--------------------------------------------------------------S-------
-S-S---------------------------------SS---SS--SSSS-SSSS------------S------------
-----------------S-------S--------------------------S---S--S------S---------S---
-SS-S--------S-------S----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------SS-------------------------------S----SSSSS------
---------------------------------S----------------------------------------------
----------------------------------S------------------S------------S-------------
--S----------------S----S--S--S--SS-SSSSSSS-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------SS----------S
-----SS---------S----------------SS---------SSSSSSS--------------------------S--
-S--SS-S-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------
---------------------------------------------------S----------------------------
---S--SSS-SSSSS---------------S---S---------S------------------------S----------
--------------------S---S-------------------------------------------------------
-----------------------------------------------------------------------------S--
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
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--------------------------------------------------------------
>forward_551
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATACGGGTCCAATAGGGGGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_2593
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AGCGATATGGCGTCTCAAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>forward_1374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCGACG
ACGTTGATGTGTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_2831
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GCCTGGATCATCGGTTCCAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------
