>input_sequence_46161
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----------------------------------------------------ATGGCAACACAGAAGCTAGCCATCTCCG
TGGCCATTTCGGCTGCGGTCCTGGTCGCCGCGCTCGCCCAGAACTCCCCGGAGGACTACGTCGGGCTCCACAACGCGGCG
CGCAGTGCGGCCGGCGCGCGACCGGTGGCGTGGGACGACGAGATGGCGCGGGAAGCAGGGAAGCGCACTGAGCGCGGCTG
TGGGCTACGTAGCCCGGACGGCGCCGGCTACGTCAACGTACCCGGCCACCACAGGTATGGCGAGAATCTCTTCCAGTTCC
ATGGCTCGCCGGAAAAGGCATGGAACGCGGGGGATGCTTTGGATGCGTGGACGGCGCCGGCGGCGAGGGAGTACGTTCAG
GTCGTGTGGCCGGACTCAACCAAGATCGGCTGCGCACGTGCCATCTGCGACCACGGTCGCGGCGTCTTCATAAGTTGCAA
CTACGAGCCTGCTGGTATGTACTAATGATACGGCTTTTGCTTTTCTTCTTATTATTTATTTCTTGATTAGACACTAGCTT
TTGTGTGGATGCATGTCGACGACAATCGTGCTGTTAGCCTCACTAACAAGTCGCTCGTTTGAGTTTAGTCATTTTGCGTA
TAATTTTAAGACATAGGCTTTTTATGTCAACTCTGTTGCAAAAGTTAAAGATAAAAAACGCCAAGTATTTGTGTTCTTTG
GTTCAAAGTTCAAACACCAAATCGACATGAATAGTTTCCATTATGACTTGTGAGTCATAGTTCATGTTTTTTTCAGACGC
GAGAGAGCACCGCCGGCCTCTTGCGTCGAGAGATGGACGCAACACATTTATTATAAGGAGTAGTTTTACCCGGTATCTAT
TTCGGTTCCCGAGCTTATCTGATCTCGGTGAACAATAAAACCAAAAAAAATAAAAAATATGTCTTTTCTATGAAAGATAT
TTTAGTGCATGAGGTCCGTGCCAAATTTCAGTGCATTTGTACATCTGAACAATTCTCAGCAAAAAAAAAACGGTCCCAAG
TAGTGCACGAACGATAAGTTTTCTCACAAACCCCAATTTTTTTGCTGAGAGCTGCTCAGATGTCGAAATGAGCTAAAATT
TGGCACAGACCCCAATGCACTAAAACATCTTCCATACAACCCCCACCCCGGATATTTTTGAATTTTTCTAGTATTTCTTT
TGATTTTCTATTCATGCATAGGAGCGGATGAGCTTGGGAGCCATTTAGCCGCTCTCTTGGAGTTCCTACATTGTATCAAG
TCCTCAAAAAGACCACACCAGTATGAATTAAAATGGCATAACTCATGCATCACATACCCCACTAGTAACATTGTCCTTAT
CAGTTGAATATAGCTCATGGTAGCATCTCCAAGTTGATCCATCCAGAAACTGAAGTATCCCGCGTCTCCACATGCTAGTC
GTAAACATTTCTTAGAAAATTCAAGGAAGCAAATATAAAATAAATATTGTGAATCCAAGTCAAAAAAAATCGAAATGGAA
ATTTTCACATGATTGATTGCAAGTTTTTCTTTTTCTTCTTTTGTGTGCTGGCAAAGTGGCAATTGTCCTAACCAATTCCT
TGGCTCTACTTTTGGTACAGTGAATGAGAACTTCGGAAGGGCGGCACTTCCTTACATGTGTAGGTTCAACATTAGTCGTT
GCTTCAATTGTACCATATGCTAG---------------------------------------------------------
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>chr7A_1_TraesCS7A01G152200
AACCAATAACTGAAAA-TAGTAAATGGAGAATGAAATACAGACAATGAAAAGCACAAGAAAATGTTCTTGTAATTTTAGA
AAGTATTTACCATTTTCTATTAGTTCATGTAACTGAACAATCTCACATTTTAAAAATGTGTTAATGTATTTAGTCAAAAA
AATGTTATGTGCTTTTAAAATTAGAAAAAGAAAAATGGAAAATGTAAAAGAAAGAAAACCAAGACAAGTAGAAGAAAAAG
TATAAACCCCCTAACAAACCCTTCCCTACCGCAAGAAAACTAATCCCTGAAAAAATCCAATGAAGAAAACAGTGCCAAAC
CCTAACTCAGGCAAAGGGTATATCC-TATTTGGCGCTTATACAGCCAAATATAGTGTATGATTTGATAAAATCTCAAAGA
CAAGTCTTGTGGGTAGTTTAGTCTGTTTCAAACCTTGGTATGTGTGCAAGACAAAGTATTGCGCAGTTTTTGATTGAATG
GGTTCTTTTTTCTTAGTTTGCCACTAGCATTTTGGATGTTTCTGCTTATTTTACGGTGACAAATTTAATCTTTGCATCAT
GGTAGTGCTTGACCCTAGCTAGTCATGATAAACTCAGGTTTCAAGTTTGTTTGCACATGAGGCCTAGTGACCTAGTGTAC
TCTTCTCAAAAAAAAAAGGGGGGGCCTAGTGTACCCGAGGGGATGAACGATGCATGTGGCCGACTGGTAGTTTCTTGTCC
GCTTCTCCTAAATTTGAATGATCAGTTGCTAAACCGAGGTCAAGTCTTCTAAGTTCAAGAGGAGATATTTAGAGTTTGAG
CAAACAGCTCAAGTGGAGGCTTAATAAAAGTGTTTTCTACGTCGATAGGGGCCTATACAAAGTTGGTAAGACGTGCCTGT
TAGCTCGATCGATATCAAAGCTCGAG---------GAAGACCTC-AGTTAATCTGCAAAGACACAATCACACAACCACAC
ACGTCAGTCAGTTACAATAGTGTGTCCGGCGACCTGGGGTGGTACGGTCATCATGGCAACACAGAAGCTAGCCATCTCCG
TGGCCATTTCGGCTGCGGTCCTGGTCGCCGCGCTCGCCCAGAACTCCCCGGAGGACTACGTCGGGCTCCACAACGCGGCG
CGCAGTGCGGCCGGCGCGCGACCGGTGGCGTGGGACGACGAGATGGCGCGGGAAGCAGGGAAGCGCACTGAGCGCGGCTG
TGGGCTACGTAGCCCGGACGGCGCCGGCTACGTCAACGTACCCGGCCACCACAGGTATGGCGAGAATCTCTTCCAGTTCC
ATGGCTCGCCGGAAAAGGCATGGAACGCGGGGGATGCTTTGGATGCGTGGACGGCGCCGGCGGCGAGGGAGTACGTTCAG
GTCGTGTGGCCGGACTCAACCAAGATCGGCTGCGCACGTGCCATCTGCGACCACGGTCGCGGCGTCTTCATAAGTTGCAA
CTACGAGCCTGCTGGTATGTACTAATGATACGGCTTTTGCTTTTCTTCTTATTATTTATTTCTTGATTAGACACTAGCTT
TTGTGTGGATGCATGTCGACGACAATCGTGCTGTTAGCCTCACTAACAAGTCGCTCGTTTGAGTTTAGTCATTTTGCGTA
TAATTTTAAGACATAGGCTTTTTATGTCAACTCTGTTGCAAAAGTTAAAGATAAAAAACGCCAAGTATTTGTGTTCTTTG
GTTCAAAGTTCAAACACCAAATCGACATGAATAGTTTCCATTATGACTTGTGAGTCATAGTTCATGTTTTTTTCAGACGC
GAGAGAGCACCGCCGGCCTCTTGCGTCGAGAGATGGACGCAACACATTTATTATAAGGAGTAGTTTTACCCGGTATCTAT
TTCGGTTCCCGAGCTTATCTGATCTCGGTGAACAATAAAACCAAAAAAAATAAAAAATATGTCTTTTCTATGAAAGATAT
TTTAGTGCATGAGGTCCGTGCCAAATTTCAGTGCATTTGTACATCTGAACAATTCTCAGCAAAAAAAAAACGGTCCCAAG
TAGTGCACGAACGATAAGTTTTCTCACAAACCCCAATTTTTTTGCTGAGAGCTGCTCAGATGTCGAAATGAGCTAAAATT
TGGCACAGACCCCAATGCACTAAAACATCTTCCATACAACCCCCACCCCGGATATTTTTGAATTTTTCTAGTATTTCTTT
TGATTTTCTATTCATGCATAGGAGCGGATGAGCTTGGGAGCCATTTAGCCGCTCTCTTGGAGTTCCTACATTGTATCAAG
TCCTCAAAAAGACCACACCAGTATGAATTAAAATGGCATAACTCATGCATCACATACCCCACTAGTAACATTGTCCTTAT
CAGTTGAATATAGCTCATGGTAGCATCTCCAAGTTGATCCATCCAGAAACTGAAGTATCCCGCGTCTCCACATGCTAGTC
GTAAACATTTCTTAGAAAATTCAAGGAAGCAAATATAAAATAAATATTGTGAATCCAAGTCAAAAAAAATCGAAATGGAA
ATTTTCACATGATTGATTGCAAGTTTTTCTTTTTCTTCTTTTGTGTGCTGGCAAAGTGGCAATTGTCCTAACCAATTCCT
TGGCTCTACTTTTGGTACAGTGAATGAGAACTTCGGAAGGGCGGCACTTCCTTACATGTGTAGGTTCAACATTAGTCGTT
GCTTCAATTGTACCATATGCTAGACATTGTTGAATGCGTATTTGATCACTACTAGCCAATGTACCTTGAGACCTAGAATT
TTCTTGTGGTGGCCTAGTTTCACCATCAACCCTCTCACAGAGATTTGTGCTGCAAGAATGGCTAAAGATTTGTCGCTTCA
GTTCATGCAAAAAGTTACAGTCGCTGATATTAAATGGTTTGGTATTTTAAGTTAAGTTCAGGCTCAAGTGTTATGAAAAA
ATTGCTTTAAGATGCGCAATACTCCCTCAGTTCCAAAATATAAGGTGTGTTAGTTTTTTCAAAAGTCAAATATGTGCATG
TTTGATCAAGCTTTTAGAAAAGAATATCAATATCTATAATACAAAAAATTTATCACTAGATCGATCTTGAAAAGTTTTTC
CATATTTATTTATTTTGTATTGTAGATGTTGATATTTTATTTTATAATCTTGATCAAACATACACAAGTTTGACTTGCAC
AGAAACGGAGGGAGTACTAATTTAAGGTGGTTGCTTGGATCGGTTGATGTACTTCTTCCTCTCCGGAAAGAAGCAAAACG
GCCAAGATTCTAACCAGGATCATTTTTAGTTTGGCAAACGAACTAGAATCTAATAAGAATCTAACCAGGCATGCCCTAGA
ATGTATATATATCGAATATACATCTCCACACTTTAGTAAAATCTCGAATGGTCCTAGAAAATATCAATTAACATGATTCG
TAAGGCCCTATTCGGTAAAGCCCTACTCCGGAAGACAATAAAGTTTCATCATTGTATAGCTTTCCATGGTAACTGTACTT
AGCCCGAGGTTTGCGTTTTTTGCATGGATAGCTAGCTTTACTGAGACATGAAACTCCGTAACATATTGTGGCGACAAAAC
AAAATTTAAGTTGGTGAGCAACCATGTTGAGTTAAGTGCCATTCTATGACACTAAACAGATTATTTATGACAAAAGTGAT
TTGTCGTAGAGAACAATTTAAACTGACAATTTGAAGAATAAACCTACATCTAATGAAAGCATT
>chr7B_1
AACCAATAACTGAAAAATAGTAAAAGGAGAATGAAATGCAAACAATGAAAAGCACAAGAAAATGTTCTTGTAATTTTAGA
AAGTATTCACCATTTTGTATTAGTTCATGTAACTGAAAAATCTCACATTTAAAAAATGATTTAATGTATTTAGTCCAAAA
AGTGTTAGATGTTTTCAAAAATTAA-----AAAAAGGAAAAACGGAAAAGAAACAAAACCAACA-AAGTAGAAGAAAAAG
TATAAAAACCCGAACAAACCCTTCCCTACCGCAAGAAAACTAATCCCTGAAAAAATCAAATGGAGAAAACGGTGCCAAAC
CCTACCTCAGCCAAAGGGTCATATCTTATTTGGCGCTTATACAGCCTAATATAGTGTATGATTTGATAAAATCTCAAAGA
CAAGTATCGTGGGTAGTCTAGTC-GTTTCAAACCTTGGTGTGTGTGCAAGACAAAGTATTGCGCAGTTTTTGATTGAATG
GGTTCTTTTTTCTTAGTTTGCCACTAGCATTTTGGATGTCTCTGCTTATTTTACGGTAACAAATTTCATCTTTGCATCAC
GGTAGCGCTTGACCCTAGCTAGTCATGATAAACTCAGGTTTCAAGTTTGTTTGCACATGAGG--------CCTAGTGTAC
TCTTCTAAAAAAAAAT---GGGGGCCTAGTGTACCCGAGGGGATGAACGATGCATGTGGCAGACTGGTAGTTTCTTGTCC
GCTTCTTCTTAATTTGAATGACCAGTTCCCAAACCGAGGTCAAGTCTTCTATGTTCAAGAAGAGATATTTAGAGTTTGAG
CAAGCAGCCCAAGTAGAGGCTTATAAAAAGTGTTTCCTACGTCGATAGGGGCCTATACAAAGTTGGTAAGCCGTGCCTGT
TAGCTCGATCGATATCAAAGCTCGAGGTCCTCGAGGAAGACCTTAAGTAAATCTGCAAAGACACAGTCAGTCAGTCACAC
AAGTCAATTACGAT--ATAGTGTGTTCGG---------------------TCATGGCAACACAGAAGCTAGCCATGGCTA
TGGCCATCTCCGCCGCGGTCCTGGCCGGTGCCCTCTCCCTGAACTCCCCGGAGGACTACGTCAGGCTCCACAACGCCGCT
CGCGGGGCGGCTGGCGCCCAACCGGTGGCATGGGACGACGAGGTGGCGCGGGAAGCCGGGAAGCGCACTGAGCGCGGCTG
TGGGCTCCGTAGGCCGGACGGCGCCGGCTACGACGACGAACCCCGCCATCATAGGTATGGCGAGAATCTGTTCCGTGGCC
CGCCCGAG------AAGGCGTGGAACGCGGGCGACGCGTTGGACGCGTGGACGGCACCGGCGGCGAGGGAGTACGTTCAG
GTCGTGTGGCCGGACTCCACCAAGATCGGCTGTGCCCGTGCCGTCTGCGGCCACGGTCGCGGCGTCTTCATAAGTTGCAA
CTACGAGCCCGCTGGTAATGAACTAATCCGTGCAGAAATTGTCTACACATACTAGCTTTT-----------------CTT
TTGTGTGGATGCATGTCGACGACAATCGTAAAGTGAGCCTCAGCAACACGTCGCTCATTTGAGTTTAGTCACTTTGCGTA
TCATTTGAAGACATATGCTT------------------------------------------------------------
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>chr7D_365
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----------------------------------------------AAATATAGTGCATGAATTGATAAAATCTCAAAGA
CAAGTATTGTGGGTAGTCTAGTC-GTTTCAAACCTTGGTATGTGTGCAAGACAAAGTATTGCGCAGTTTTTGATTGAATG
GGTTCTTTTTTCGTAGTTTGCCACTAGCATTTTGGACGTTTCTGATTATTTTACGGTAACAAATTTAATCTTTGCATCAT
GGTAGCGCTTGACCCTAGCTAGTCATGATATACTCAGGTTTCAAGTTTGTTTGCACATGAGG--------CCTAGTGTAC
TCTTCTAAAAAAA-------GGGGCCTAGTGTACCCGAAGGGATGAACGATGCATGTGGCAGACTGGTAGTTTCTTGTCC
GCTTCTTCTTAATTTGAATGACCAGTTGCTAAACCGAGGTCAAGTCCTCTAAGTTCAAGAAGAGATATTTAGAGTT-GAG
CAAGCAGCCCAAGTGGAGGCTTAATCAAAGTGTTTTCTACGTCGATCGGGGCCTATACAAAGTTGGTAAGCCGTGCCTGT
TAGCTCGATCGATATCAAAGCTCGAG---------GAAGACCTC-AGTTAATCTGCAAAGACACAATCACACAG------
--GTCAGTCAGTTACAATAGTGTGTCTGGCGACCTGGGGTAG---GGTCATCATGGCAACACAGAAGCTAGCCATCGCCA
TGGCCATCTCCGCCGCGGGCCTGGCCGCCGTGCTCGCCCAGAACTCCCCGGAGGACTACGTCAGGCTCCACAACGCCGCT
CGCGGGGCGGCCGGCGCAAGACCGGTGGCGTGGGACGACGAGGTGGCGCGGGAAGCGGGGAAGCGCACTGAGCGCGGCTG
TGGGCTACGTAGCCCGGACGGCTCCGGCTACGACGACGGACCCCGCCACCACAGGTATGGCGAGAATCTGTTCCGTGGCC
CGCCCGAG------AAGGCGTGGAACGCGGGCGACGCGTTGGATGCGTGGACGGCACCGGCGGCGAGAGAGTACGTTCAG
GTCGTGTGGCCGGAGTCGACAAAGATCGGCTGCGCCCGTGCCGTCTGCAACGACGGTCGCGGCGTCTTCATAAGTTGCAA
CTACGAGCCCGCTGGTAATGAACTAATCCGTGCAGAAATTGTCTACACATACTAGCTTTT-----------------CTT
TTGTGTGGATGCATGTCGACGACAATCGTAAAGTGAGCCTCAGCAACACGTTGCTCATTTGAGTTTAGTCACTTTGCGTA
TCATTTGAAGACATATGCTT------------------------------------------------------------
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>SNPs
------------------------S------------S--S---------------------------------------
-------S--------S--------------------S------------S-------SS---------------S----
-S-----SS--S---S----S-SS-SSSSS-----S-S----S-S--------S--------S-S---------------
------SS---S---------------------------------------------S----S-------S---------
----S-----S--------SSSSS--------------------------------------------------------
-----S-----------S-----S--------------------------------------------------------
---------------------------------------------------------S----------------------
-----S--------------------------------------------------------SSSSSSSS----------
------S--------SSSS-----------------------------------------S-------------------
------S--S-----------S--------------------------------------S-------------------
---S----S-------------------------------------------------------------S---------
-------------------------------------------------------------------------SS-----
-S--------------------------------------S-SSS-------------------------------S--S
-------S--S--S----------S-------------------------------------S-------------S--S
---S-S-----------S------------------------S-------------S-----------------------
--------------------------------S-S---S----S-------------------------S----SSSS--
SSSS-SS-SSSSSS-----S-----------S--S--S-----------------S------------------------
-----------------S-----------------S------S-------------------------------------
---------S-------SSS-SSS-SSSSSS-SSSSSSSSS-S-SSS-S--S--SS-S--SSSSSSSSSSSSSSSSS---
-----------------------------SSS--S-------SS----S-------S--------------S--------
-S----S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_701
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-----------------------------------------GATGAACGATGCATGTGGCC-------------------
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>reverse_2370
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-------------------------------------------------CTGAAGTATCCCGCGTCTCC-----------
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>forward_1955
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---------------CCGTGCCAAATTTCAGTGCA---------------------------------------------
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>reverse_3436
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---------------------------------------------------------------------------TACTT
AGCCCGAGGTTTGCG-----------------------------------------------------------------
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