>input_sequence_46131
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---------------------------------------------------------ATGGCGGCCATCTTGGGAATGGG
AGCTCCCGTGCTACTGGCCGCTGCCTTGGGGGCGGCCTGCGGGCTCCTGTTCTGGCTCCGGGTGGCCCGGAGGAGGCCGG
CCGACGATCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCGGTGGTGGGCGAGACCTTCGCCTTCATCGCCGCCTTC
TCCAACCCGGCCGGCATCCTGAGCTTCATGCGGGAGCGGCAGGCGAGGTACGGCAAGGTGTTCAAGACGTACGTGCTGGG
GCGGACGACGGTGTTCATGACGGGGCGGGAGGCAGCCAAGATCCTGCTCTCCGGCAAGGACGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGACGAGCACCGGCGGCTGCGCCGG
CTCATCGCGCAGCCCCTCTCCGTGGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCTGGGCCGGCCGCGGCCGCG------TGCTCGTCCTCGACGAGGCCTCGCAGTTCACGCTCAAGGTCATCGCCAACA
TGCTCGTCAGCCTGGAGCCGGAGGGCCCCGAGCAGGAGGAGTTCCGGGCCAACTTCAAGGCCAT---CTCCTCCTCCTTC
GCGTCGCTGCCGCTCAAGCTCCCCGGCACGGCCTTCCACCGCGGCCTCGGCGGCCGGAACCGGATGTACGCCATGCTGGA
CGAGGTGATCGCGCGCCGCAGGGCCGGCGAGGTCCGCGAGGACTTCCTCCAGACGCTGCTCATGAAGCACGCCCGCGGCC
AGCAAGCCGGCGCCGCCGCGGCGTCGGACCCGGCGGAGGAGGAGAAGCTGACGGACGCGCAGCTCAAGGACAACATCCTG
ACCCTGCTGGTGGCCGGCCACGACACCACCACGGCGGGCCTGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCCGACGT
GCTAGCCAAGCTGAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGACGACACACAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCGTACACGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGCCGCGCAGGACTTCAGCATCGACGGCTTCGAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTCGTGTCCATCCA
CCACGACGCCGCCGTCTTCGCCGACCCCGAGCGCTTCGACCCAGACAGATTCGATGTGCGTCTC------------CTTT
CTTTCTTCCTTGTCTCCGGCGAGCGGCCCGGCTAGCTGACGACTCGACTGACTTTGTGCAATGCACGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCGCGGATGTGCCCCGGGATGAGCCTCGCCAAGCTCGAGATC
TTCGTCTTCGCCCACCACCTAGTCTGCACATACGAGTGAGTCGCTGTGCCCCC-----------GCCGGCAAACTCTGCC
GCCGGCCACCGTGTCCAATGTCTAGCTCTGACGTTTGT------------------------TTTCTGTGCAGCTGGAAG
GCGCTGGAGGATGACGCCTCGGTGCAGCCGACGCTGGTGCGCATGCCCAAGAACAAGTACCCCATCCTCGCCACCGCGCT
CCCCTGA-------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G355800
CATCACCGCCAGAGCCTCACACACTGCCACCCCATGTCTCATCCTACCCAGGCAAGCCCCACCA-TATGGAACGGGGAGT
CTGCCCGTATCGCCTGAGAGAGTCACCGACGCGTCAAACAGCCGTCTCGTACGCACCCTC----------------CGTC
CCGCACCTAGCATCGCAACCCTGACAGTCGACTGCATCCTGCGCCACCGTCGCCGTTGACATAGGCCGAGCTTCGCCCGA
CAACACCTTCTGGCGACTGAGGTGGAGAGGGGGAGGGGTGAAGGAGGTGGAGGATTGTCCAGCTGTCGTGGGGGCAACAC
GAACAAGATGAAGGTGTCAACTCGTCAGCCATACACACACATTCATGCAACGGCTAAGATACAACCATCTAGTTAACCAT
TCAACCATAGGCTGGTTCTCACGCTTCATCAACTTTTGTAAATGAACATAGACCTATACCACAGGTAGGTACCTGTGAGT
AGAAAACGAATCCTGCCTACGTGGCTACGTTAACCTCAAGAATAATACGTTTGTGGGCATGTCATAGTTGATAGTCCTTA
TCAAAGCCTGTCCACGAGCTTCGTGGCACAAGTTAAAACAAAGCTTATCTCCATGCACATGGCCGGCACACTCTTCTACA
AGTCACACAAATACTTCTTTGGTTTTGGGAGCCGTTATAACAACTTCTATATAATCTAAGAAAAATGATATGTTCAGTTT
ACAAGGAAACTGTGTGAACAAGACAAGGGCTAAAGCAGAGCACGTAATCATGGATGTATGCATGGTGTATATAATCTAAA
GGAAAAAGGACAACCAAATCGGCACCAAAGACAAAGGCTAAAGCTAGCTGAGCCGATCACAATGGAACTCGAGTGAACCC
CTGGCATGGCACCAAATGGCTCCCTCTCGGGCGTAACGACGACGAGGCATCAGAGGACAAGAGACAAGGATATATAAGGC
CAAGAATGGCGATGGTGATACGTACGGCTCTGTCAAGCTTTCTCTCGGACACCATCAATGGCGGCCATCTTGGGAATGGG
AGCTCCCGTGCTACTGGCCGCTGCCTTGGGGGCGGCCTGCGGGCTCCTGTTCTGGCTCCGGGTGGCCCGGAGGAGGCCGG
CCGACGATCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCGGTGGTGGGCGAGACCTTCGCCTTCATCGCCGCCTTC
TCCAACCCGGCCGGCATCCTGAGCTTCATGCGGGAGCGGCAGGCGAGGTACGGCAAGGTGTTCAAGACGTACGTGCTGGG
GCGGACGACGGTGTTCATGACGGGGCGGGAGGCAGCCAAGATCCTGCTCTCCGGCAAGGACGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGACGAGCACCGGCGGCTGCGCCGG
CTCATCGCGCAGCCCCTCTCCGTGGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCTGGGCCGGCCGCGGCCGCG------TGCTCGTCCTCGACGAGGCCTCGCAGTTCACGCTCAAGGTCATCGCCAACA
TGCTCGTCAGCCTGGAGCCGGAGGGCCCCGAGCAGGAGGAGTTCCGGGCCAACTTCAAGGCCAT---CTCCTCCTCCTTC
GCGTCGCTGCCGCTCAAGCTCCCCGGCACGGCCTTCCACCGCGGCCTCGGCGGCCGGAACCGGATGTACGCCATGCTGGA
CGAGGTGATCGCGCGCCGCAGGGCCGGCGAGGTCCGCGAGGACTTCCTCCAGACGCTGCTCATGAAGCACGCCCGCGGCC
AGCAAGCCGGCGCCGCCGCGGCGTCGGACCCGGCGGAGGAGGAGAAGCTGACGGACGCGCAGCTCAAGGACAACATCCTG
ACCCTGCTGGTGGCCGGCCACGACACCACCACGGCGGGCCTGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCCGACGT
GCTAGCCAAGCTGAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGACGACACACAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCGTACACGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGCCGCGCAGGACTTCAGCATCGACGGCTTCGAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTCGTGTCCATCCA
CCACGACGCCGCCGTCTTCGCCGACCCCGAGCGCTTCGACCCAGACAGATTCGATGTGCGTCTC------------CTTT
CTTTCTTCCTTGTCTCCGGCGAGCGGCCCGGCTAGCTGACGACTCGACTGACTTTGTGCAATGCACGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCGCGGATGTGCCCCGGGATGAGCCTCGCCAAGCTCGAGATC
TTCGTCTTCGCCCACCACCTAGTCTGCACATACGAGTGAGT-----------CGCTGTGCCCCCGCCGGCAAACTCTGCC
GCCGGCCACCGTGTCCAATGTCTAGCTCTGACGTTTGT------------------------TTTCTGTGCAGCTGGAAG
GCGCTGGAGGATGACGCCTCGGTGCAGCCGACGCTGGTGCGCATGCCCAAGAACAAGTACCCCATCCTCGCCACCGCGCT
CCCCTGAACCCCAGCTGT----------------------TCGCTCTGACCCCAGCTCCGGCGA----------------
-------TGGCGAGGTGGCGACATTTGTTTTCAGCATGTGACAGACCGACACGCACTCTACTGATGCTGTCATCGGCATG
GTCAGATTATATGGTATCCTGAGGCTACTTGTATTGTATGGACCAACTATATGCAAACTTTACTTGTATTAGCAAGTGAA
ACCAGCAATCATTTTTCTTAGTACAACAATTCCATACACATGAC-ATGAACAGCTCATGAATTTAAACAAGGAAAAACAA
GTAAAGTGAACAAAACATTCTTTAGACACCACC-AAACATGTAAAACTTGCAATGCCATGTAAACTTAATTTAAACAAGG
AAAAACTCTTTAGATGACCTATCTGATGGCCATGTAAACTTGCAATGCCACACTATAATACACTACATACTAACGGAACC
TGCTACTCCGGTGGTGCATTGCCAAAGAAGAATAGCCAGGCAGAGCTCAGCATTACTCTGATGCGCATCTCTCGCGACGA
ACACGGCCCAATGATGCATCTCTAGCGACCAACGGCACAGCTCAACGAAACAAGGAAGCAACAGCTAGCAAACTCCAGCG
ACCAGGTAGCAAGGCCGACCAACTGGGACAAACTCCAGTGACCAGGTAGCAAAGCCGAGCAACAGCGGCAAAGGCACAGA
CCAACATTTTTAGGCAGGCTGCAGAGAAGTAGGGGACCTCCAATGGCTATGGTATACTGGCACAGATTGGAATCAACCAA
CATGACCTCAGTCATTATTAGACAACAACGGAAGGAAGAACCCAACGAAACCGATCCAGAACAAAATAAGCAACCCAAAA
GGGGGCCTGCCAAAACAGAAGATCATTTAAGATTGATAGCTAAACTCAATCTCGAAAACAGAGCATTGAAAGAGATTACC
GGTTTGCTTTTCCTTTTACGGACCGATGATTGTCACCTCCCCCTTTTTCTTGCGATGAAATTTTCAAGCAAAGTTTAGCT
GACCGTTTCCTTCC
>chr5D_12
-----------GAGCCTCACGCACTACCACCCCATGTTTCTGCCTACCCAGGCAAGCCCCTGCCCTATGGAACGGGGAGT
CTGCCCGTATCGCTTGAGAGAATCATCGACGCATC--ACAGTCGTCTCGCACGCACCCTCCGCCACACAGCTGTCACGTC
CCGCACCTAGCATCGCAACCCTGACAACCGACCGCATCCCGCGCCACCGTCGACGTTGACATAGGTCGAGCTTCGCCCGA
CAACACCTTCTGGCGGCAACGA--------------GGTGGAGGAGGTGGGGGATTGTCCGGCTGTCGCGGGGGCAGCGC
GAACAAGATGAAGGTGTCAGGTCGTCAGCCATATACACGCATTCATGCAACGGCTAAGGTACAACCATCCTGTTAACCAT
TCAACCATAAGTTGGTTCTCACGCTTCATCAACTTTTGTAAATGAACATAGACCTGTACCACAGGTAGGTACCTGTGAGT
AGAAAACAAATCCTGCCTACGTGGCTACGTTAACCTCAAGAATAATACGTTTGTGGGCATC---------ATAGTCCTTA
TCAAAGCCTGTCCATGAGCTTCGTGGCACAAGTTAAAACAAAGCTTATCTCCATGCACATGGCCGGCACAC---TCTACA
GGTCACACAAATACTAGTACTTCTTT-GGAGCTGTTATAGCAACTTCTATATAACCTAAGAAAAACGATATGTTCAGTTT
ACAAGGAAACTGTGTGAACAAGACAAGGGCTAAAGCAGAGCACGTAATCATAGATGTATGCATGGTGTA--TAATCTAAA
AGAAAAAAGACAACCAAATCGGCACCAAAGACAAAGGCTAGAGCTAGCTGAGCCGATCACAATGGAACTCGAGTGAACCT
CTGGCATGGCACCAAATGGCTCCCTCTCGGGCGTAACGACGACGAGGCAACAGAGGACAAGAGACAACGATATATAAGGC
CAAGAATGGCGATGGTGATACGTACAGCTCTGTCAACCTTC--CTCCGACACCATCAATGGCGGCCATCTTGGGAACGGG
AGCTCCCGTGCTGCTGGCCGCTGCCTTGGGGGCGGCCTGCGGGCTCCTCTTCTGGCTCCGGGCG---TTGAGGCGGCCGG
CCGACGACCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCGGTGGTGGGCGAGACCTTCGCCTTCATCGCCGCCTTC
TCCAACCCGGCCGGCATCCTGAGCTTCATGCGCGAGCGGCAGGCGAGGTACGGCAAGGTGTTCAAGACGTACGTGCTGGG
GCGGACGACGGTGTTCATGACGGGGCGGGAGGCGGCCAAGATCCTGCTGTCCGGCAAGGACGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGACGAGCACCGGCGGCTGCGCCGG
CTCATCGCGCAGCCCCTCTCCGTGGACGCTTTACGGAAGCATTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCTGGGCCGGCCGCGGCCGCG------TGCTCGTCCTCGACGAGGCCTCCCAGTTCACGCTCAAGGTCATCGCCAACA
TGCTCGTCAGCCTGGAGCCGGAGGGGCCGGAGCAGGAGGAGTTCCGGGCCAACTTCAAGGCCAT---CTCCTCCTCCTTC
GCGTCGCTGCCGCTCAAGCTCCCCGGCACGGCCTTCCACCGCGGCCTCGGCGGCCGGAACCGGATGTACGCCATGCTGGA
CGCGGTGATCGCGCGCCGCAGGGCCGGCGAGGTCCGCGAGGACTTCCTCCAGACGCTCCTCATGAAGCACGCCCGCGGCC
AGCAAGGAT------------CGTCGGACCCGGCGGAGGAGGAGAAGCTGACGGACGCGCAGCTCAAGGACAACATCCTG
ACGCTGCTGGTGGCCGGCCACGACACCACCACGGCGGGCCTGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCGGACGT
GCTCGCCAGGCTCAGGGAGGAGCACATGGGGATCCGGGCGGCGCACGACGGCGACGACACGCAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCGTACACGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGCCGCGCAGGACTTCAACATCGACGGCTTCCAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTGGTGTCCATCCA
CCACGACGCCGCCGTCTTCGCCGACCCCGAGCGCTTCGACCCGGACAGATTCGACGTGCGTGCCTAG----CCTAGCTTC
CTTTCTTCCTCGTCTCCGGCGAGCAGCCGAGCTAGCTAACGACTCGACTGACTTTGTGCAATGCACGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCGCGGATGTGCCCGGGGATGAGCCTCGCCAAGCTCGAGATC
TGCGTCTTCGCACACCACCTCGTCTGCACATACGAGTGAGTCGCTGTCCCCCC-----------GCCGGCGAACTCTGCC
GCCGGCCACCGTGTCCAGTCACTAGCTCTGAAACGGCCGGCTAACGGTAATAATGGTGTTTGTTTCTGTGCAGCTGGAAG
GCGCTGGAGGATGACGCCTCGGTGCAGCCGACGCTGGTGCGCATGCCCAAGAACAAGTACCCCATCCTCGCCACCGCGCT
CCCCTGAACTCCATCTCCGGCGATTTGCGCCGATGCTGGCTCGCTCTGACCCCAGCTCCTGAATTATTTACTTGTTATTA
GTTTAATTGGCGAGGTGGCGGCATTTGTTTTCGGCATGTGACAGACCGACACGCACTCTACAGATGCTGTCATCGGCATG
GTCAGAT--TATGGTATTTTGAGGCTACATGTATTGTATGGACCAACTATATGCAAACTTTGCTTGTATTAGCAACTGAA
ACCAGCAATCACTTTTCTTAGTACAACAATTCCACACACATAAGGATGAACAGCTCATGAATTTAAACAAGGAAAAACAA
ATAAAGTGAACAAAACATTCTTTAGACG--ATTAAAACATGTAAAACTTGCAATGCCATGTAAACTAAATTTAAACAAGG
AAAAACTCTTTAGATGACCTATCTGATGGCCATGTAAACTTGCAATGGCACACTATAATACACTACATACTAACGGAACC
TGCTACTCCGGTGGTGCATTGCCAAAGAAGAATAGCCAGGT--AGCTCAGCATTATTCTCATGCGCATCTCTCGCGACGA
ACACGGCCCAGTGATGCATCTCTAGCGACGAACGGCACAGCTCAACGAAACAAGGAAACAACAGCTAGCAAACTCCAGCG
ACCAGGTAGCAAGGCCGACCAACAGGGACAAACTCCAGTGACCAGGTACCAAAGCCGACCAACAGCGGCAAAGGCACAGA
CCAACATTTTTAGGCAGGCTGCAGAGAAGCAGGGGTCCTCCAATGGCTATGGTATACTGGCACGGATTGGAATCAGCCAA
CATGACCTCAGTCATTATTAGACAA-----------------CAACGAAACCGATCCAGAACAAAATAAGCAACCCAAAA
GGGGGCCTGCCAAAACAGAAGATCATTTAAGATTGATAGGTCAACTCAATCTCAAAAACAGAGCATTGAAAGAGATTACC
GGTTTGCTTTTCCTTTTACGGACCGATGATTGTCATCTCCCCC-TTTTCTTGCGATGAATTTTTCAAGCAAAGTTTAGTT
CACCGTTTCCTTCC
>chr5B_668
TTCTATATG-----------------------------------------------------------------------
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---------------------------------------------------TAACCTAAGAAAAGTGATGTGTTCAGTTT
ACAAGGAAACTGTGTGAAGAAGACAAGG-CTAAAACAGAGCACGTAAACATCCATGTATGCATGGTGTA--TAATATAC-
GGAAAAAGGACAACCAAATGAGCACCAAAGACAAAGGCTAAAGCTAGCTGAGCCGAACACAATGGAACTCGAGTGAACCC
CTGGCATGGCACCAAATGGCTCCCTCTCGGGCGTAACGACGACGAGGCATCGGAGGACAAGAGACAACGATATATAAGGC
CAAGAATGGCGATGGTGATACGTACAGCTCTGTCAAGCTTTCTCTCGGACACCATCAATGGCGTCCATCTTTGGATCTCC
TGCGGTGCAGGTGCTGGCTGCTGTCGTGGGGGCGGCCTGCGGGCTGCTGT---GGCTCCGAGCG---CGGAGGAGGCCGG
CCGACGACCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCGGTGGTGGGCGAGACCTTCGCCTTCATCGCCGCCTTC
TCCAACCCGGCCGGCATCCTGAGCTTCATGCGGGAGCGGCAGGCGAGGTACGGCAAGGTGTTCAAGACGTACGTGCTGGG
GCGGACGACGGTGTTCATGACGGGGCGGGAGGCGGCCAAGATCCTGCTGTCCGGCAAGGACGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGACGAGCACCGGCGGCTGCGCCGG
CTCATCGCGCAGCCCCTCTCCGTCGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCTGGGCCGGCCGCGCCCGCG------TGCTCGTCCTCGACGAGGCCTCGCAGTTCACGCTCAAGGTCATCGCCAACA
TGCTCGTCAGCCTGGAGCCGGAGGGCCCCGAGCAGGAGGAGTTCCGGGCCAACTTCAAGGCCAT---CTCCTCCTCCTTC
GCGTCGCTGCCGCTCAAGCTCCCCGGCACGGCCTTCCACCGCGGCCTCGGCGGCCGGAACCGGATGTACGCCATGCTGGA
CGCGGTGATCGCGCGCCGCAGGGCCGGCGAGGTCCGCGAGGACTTCCTCCAGACGCTCCTCATGAAGCACGCCCGCGGCC
AGCAAGCCAGCGACGCCG---CGCCGGACCCGGCGGAGGAGGAGAAGCTGACGGACGCGCAGCTCAAGGACAACATCCTG
ACGCTGCTGGTGGCCGGTCACGACACCACCACGGCGGGGCTGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCCGACGT
GCTCGCCAGGCTGAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGACGACACGCAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCGTACACGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGCCGCGCAGGACTTCAGCATCGACGGCTTCGAGGTGGCCAAGGGCGCGTCCGTGAACCTGGACGTGGTGTCCATCCA
CCACGACGCCGGCGTCTTCCCCGACCCCGAGCGCTTCGACCCCGACAGATTCGACGTGCGTCTC------------CTTT
CTTTCTTCCTCGTCTCCGGCGAGCAGCCTGGCTAGCTGACGGCTCGACTGACTTTGTGCAATGCACATATATGCAGGGGA
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCCCGGATGTGCCCAGGGATGAGCCTCGCCAAGCTCGAGATC
TGCGTCTTCGCCCACCACCTTGTCTGCACATACGAGTAAGT-----------C-----------GCCGGCGAACTCTACC
GCCGGCCACCGTGTCCAATGTCTAGCTCTGACGTCTGT------------------------TTTCTGTGCAGCTGGAAG
GCGCTGGAGGATGACGCCTCGGTGCAGCCGACGCTGGTGCGCATGCCCAAGAACAAGTACCCCATCCTCGCCACCGCGCT
CCCCTGAACTCCAGCTCCGGCGATTTGTGCCGACGCGGACTCGCTCTGACCCCAGCTCCGGCCA----------------
-------TGGCGAGGGGCCGACATTTGTTTTCAGCATGTGACAGACCGACAGGCACTCTACTGATGCTGTCATCGGCATG
GTCAGAT--CATGGTATCTTGAGGCTACTTGTATTGTATGGGCCAACTATATGCAAACTTTACTTGTACTAGCAAGTGAA
ACCAGCAATCACTTTTTTTAGCACAACAATTCCACACACATAAGGATGAACAGCTCATGAATTTAAACAAGGAAAAACAA
GTAAAGTGAACAAAACATTCTTTAGACG--ACC-AAACATGT-AAACTTGCAATGCAATGTAAACTAAATTTAAACAAGG
AAAAACTCTTTAGATGAGCTATCTGATGGCCATGTAAACTTGCAATGCCACACTATAACACACTACATACTAACGGAACC
TGCTACTCCGGTGGCGCATTGCCAAAGAAGGATAGCCATGT--AGCTGAGCATTATTCCGATGTGCATCTCTCGCGACGA
ACACAGCCCAACGATGCATCTCTAGCGACGAACGGCACAGCTCAACGAAACAAGGAAGCAACAGCTAGCAAACTCCAGCG
ACCAGGTAGCAAGGCCGACCAACAGGGACAAACTCCAGTGACCAGGTAACAAAGCCGGCGAACAGGGGCAAAGGCACAAG
CAT-CATTTTTAGGCAGGCTGCAGAGAAGCAGGGGACCTCCAATGGCTATGGTATACTGCCACAGATTGGAATCAACCAA
CATGCCCTCGGTTATTATTAGACAACAACGGAAGGAAGAACCGAACGAAACCGATCCGGAACAAAATAAGCAACCCAAAA
GGGGGCCTGCCAAAACAGAAGATCATTTAAGATTGATAGCTTAACTCAATCCCAAAAACAGAGCATTGAAAGAGATTACC
GGTTTGCTTTTCCTTTTACGGACCGATGATTGTCACCTCCCCC-TTTTCTTGTGATGAATTTTTCAAGCAAAGTTTAGTT
CACCGTTTCCTTCC
>chr2D_1040
GCCA----------------------------------------------------------------------------
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--------------------CTGCCTTGGGGGCGGCCTGCGGGCTCCTCTTCTGGCTCTGGGTG---TTGAGGCGGCCGG
CCGACGACCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCTGTGGTGGGCGATACCTTCGCCTTCATCGCCGCCTTC
TCGAACCCGGCCGGCATCCTGAGCTTCTTGCGCGAGAGGCAGGCGAGGTACGACAAGGTGTTCAAGACATACGTGCTGGG
GCGGATGACAGTGTTCATGACGGGGCGGGAGGCGGCCAAGATCCTGCTATCCGGCAAGGACGACGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGACGAGCACCAGCGGCTGCGCCGG
CTCATCGCGCAGCCCCTCTCCATGGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCAGGGCCA------GCCGCG------TGCTCGTCCTCGACGAGGCCTCGCAGTTCATGCTCAAGGTCATCGCCAACA
TGCTCGTCAGCCTGGAGCCGGAGGGCCCCGAGCAGGAGGAGTTCCGGGCAAACTTCAAGGCCATGATCTCCTCCTCCTTC
ACGTCGCTGCCGCTCAAGCTCCCCGGCACAACCTTCCATCGCGGCCTCGGCGGCCGGAACTGGATGTACGCCATGCTGGA
CGCGGTGATCGCGTGCCGCAGGGCCGGCGAGGTCCGCGAGTACTTCCTCTAGACGCTCCTCATGAAGTACACCCGCGGCC
AGCAAGCCGG---CGCCG---CGTCCGACCCAGCGGAGGAGGAGAAGCTGGCCGACGCGCAGCTCAAGGACAACATCCTG
ACGCTGCTGGTGGCTGGCCACGACTCCACCACGGTGGGCCAGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCCGAGGT
GCTCGCCAAGCTCAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGATGACACGCAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGTCGTACACGACCAAGGTGATGAACGAGACGCTGCAGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGCCTCGCAGGACTTCAGCATCGACGGGTTCTAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTGGTGTCCATCCA
CCACGACGCCACCGTCTTCGCCGACCCCGAGCGCTTCGACCCAGACAGATTCCACGTGCGTGCGCCGTGACCCTGGCTTC
CTTTCTTCCTCGTCTCCGGAGAGCAGCCCAGCTAGCTGACGGCTCGACTGACTTTGTGCAATGCATGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCGCGGATGTGCCCAGGGATGAGCCTCGCCAAGCTCGAGATC
TGCGTCTTTGCCCATCACCTAGTCTGCACATACGAGTGAGTCGCTGTCCCCT------------GCCGGCGAACTCTGCC
GCCGGCCACCGTGTCCAATGTCTAGCTCCGACGTTTGT------------------------TTTCTATGCAGCTGGAAG
GCACTGGAGGATGACGCCTCGGTGTAGCCGAGGCTGGTGCGCATGCCCAATAACAAGTACCCCATCCTCGCCACCGCCCT
CCCCTGA------------------------------------CTCCGACCCCAACTCCGACGA----------------
-------TGGCGAGGCGGCGACATCTGCTTTCAGCCTGTG----------------------------------------
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>chr2D_1044
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--------------------CTGCCTTGGGGGCGGCCTGCGGGCTCCTCTTCTGGCTCTGGGCG---TTGAGGCGGCCGG
CCGACGACCCGATGCGTGGCATCCCGGGGAACATGGGGTGGCCGGTGGTGGGCGATACCTTCGCCTTCATCGCCGCCTTC
TCGAACCCGGCCGGCATCCTGAGCTTCTTGCGCGAGAGGCAGGCGAGGTACGACAAGGTGTTCAAGACATACGTGCTGGG
GCGGACGACAGTGTTCATGACGGGGCGGGAGGTGGCCAAGATCCTGCTGTCCGGCAAGGACGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGTCTTCTCACCACCAACGGCGACGAGCACCGGCAGCTGCGCCGG
CTCATCGCGTAGCCCCTCTTCGTGGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCTGTGCAGATCCTCGG
CTCCAGGGCCA------GCCGCG------TGCTCGTCCTGGACGAGGCCTCGCAGTTCATGCTCAAGGTCATCGCCAACA
TGTTCGTCAGCCTGGATCCGGAGGGCCCCGAGCAGGAGGAGTTCCGGGCAAACTTCAAGGCCATGATCTCCTCCTCCTTC
ACATCGCTGCCGCTCAAGCTCCCCGGCACAGCTTTCCATCGCGGCCTCGGCGGCCGGAACCGGATGTACGCCATGCTGGA
CGCGGTGATCGTGTGCCGCAGGCCCGGCGAGGTCCGCGAGTACTTCCTCCAGACGCTCCTCATGAAGTACACCCGCGGCC
AGCAAGCCGG---CGCCG---CGTCTGACCCAGCGGAGGAGGAGAAGCTGACCGACGCGCAGCTCAAGGACAACATCCTG
ACGCTGCTGGTGGCTGGCCACGACACCACCACGGCGGGCCAGACCTGGCTCGTCAAGTTCCTCGGCGAGAACCCCGAGGT
GCTCGCCAAGCTCAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGATGACACGCAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCATACGCGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCCTGCCGTGGTACTCGCGC
AAGGTCTCGCAGGACTTTAGCATCGATGGGTTCCAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTGGTGTCCATCCA
CCACGACGCCGCCGTCTTCGCCGACCCCGAGCGCTTCCACCCAGACAGATTCGACGTGCGTGCGCCGTGACCCTGGCTTC
CTTTCTTCCTCGTCTTCGGAGAGCAGCCCAGCTAGCTGACGGCTCGACTGACTTTGTGCAATGCATGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCTGGGGTTCGGCAGCGGGCCGCGGATGTGCCCAGGGATGAGCCTCGCCAAGCTCGAGATC
TGCGTCTTTGCCCATCACCTAGTCTGCACATACGAGTGAGTCGCTGTCCCG-C-----------GCCGGCGAACTCTGCC
GCCGGCCACCGTGTCCAATGTCTAGCTCTGACGTTTGT------------------------TTTCTGTGCAGCTGGAAG
GCACTGGAGGATGACGCCTTGGTGCAGCCGACGCTGGTGCGCATGCCCAATAACAAGTACCCCATCCTCGCCACCGCCCT
CCCCTGA------------------------------------CTCCGACCCCAACTCCGACGA----------------
-------TGGCGAGGCGGCGACATCTGCTTTCAGCCTGTG----------------------------------------
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>chr2D_1044
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--------------------CTGCCTTGGGGGCGGCCTGCGGGCTCCTCTTCTGGCTCTGGGCG---TTGAGGCGGCCGA
CCGACGACCCGATGCGTGGCATCCCAGGGAACATGGGGTGGCTGGTGGTGGGCGATACCTTCGCCTTCATCGCCGCCTTC
TCGAACCCGGCCGGCATCCCAAGCTTCTTGCGCGAGAGGCAGGCGAGGTACGACAAGGTGTTCAAGACATACGTGCTAGG
GCAGACGACAGTGTTCATGATGGGGCGGGAGGCGGCCAAGATCCTGCTGTCCGGCAAGGATGGCGTGGTGAGCCTCAACC
TCTTCTACACCGGCAAGCAGGTGCTGGGCCCCACCAGCCTGCTCACCACCAACGGCGATGAGCACCGGCGGCTGCGCTGG
CTCATCGCGCAGCCCCTCTCCGCGGACGCTTTACGGAAGCACTTCGCCTTCATCGACGGCCTCGCCGTGCAGATCCTCGG
CTCCAGGGCCA------GCCGCGGCCGCGTGCTCGTCCTCGATGAGGCCTCGCAGTTCATGCTCAAGGTCATTGCCAACA
TGATCGTCAGCCTGGAGCCGGAGCGCCCCGAGCAGGAGGAGTTCCGGGTAAACTTCAAGGCCAT---CTCCTCCTCCTTC
ACGTCGCTGCCGCTCAAGCTCCCCGGCACAACCTTCCATCGCGGCCTCAGCGGTCGGAACCGGATGTACGCCATGCTGGA
CACGGTGATCGCGTGCCGCATGGCCGGCGAGGTCCGCGAGGACTTCCTCCAGACGCTCCTCATGAAGTACACCCGCGGCC
AGCAAGCCGG---CGCCG---CGTCCGACCCAGCGGAGGAGGAGAAGCTGGCCGACGCGCAGCTCAAGGACAACATCCTG
ACGCTACTGGTGGTCGGCCACGACACCACCATGGCGGGCCAGACCTAGCTCGTCAAGTTCCTCGGCGAGAACCCCGAGGT
GCTCGCCAAGCTCAGGGAGGAGCACATGGCGATCCGGGCGGCGCACGACGGCGATGACACGCAGCACCTGTGGTGGTCGG
ACCTGAGCAGCATGCCGTACACGACCAAGGTGATGAACGAGACGCTGCGGCGGGCCACCATCATGCCGTGGTACTCGCGC
AAGGCCTCGCAGGACTTCAGCATCGACGGGTTCCAGGTGGCCAAGGGCGCGTCGGTGAACCTGGACGTGGTGTCCATCCA
CCACGACGCCGCCGTCTTCGCCGACCCCGAGCGCTTCGACCCAGACAGATTCGACGTGCGTGCGCCGTGACCCTGGCTTC
CTTTCTTCCTCGTCTCCGGAGAGCAGCCCAGCTAGCTGACGGCTCGACTAACTTTGTGCAATGCATGTAT--GCAGGGGT
CGCTGAAGCCGTACAGCTTCCAGGGGTTCGGCAGCGGGCCGCGGATGTGCCCAGGGATGAGCCTCGCCAAGCTCGAGATC
TGCGTCTTTGCCCATCACCTAGTCTGCACATACGAGTGAGTCGCTGTCCCC-C-----------GTCGGCGAACTTTGCC
ACCGGCCACCGTGTCCAATGTCTAGCTCTGACGTTTGT------------------------TTTCTGTGCAGCTGGAAG
GCACTGGAGGATGACGCCTCGGTGCAGCCGATGCTGGTGCGCATGCCCAATAACATGTACCCCATCCTCGCCACCGCCCT
CCCCTGA------------------------------------CTCCGACCCCAACTCCGACGA----------------
-------TGGCGAGGCGGCGACATCTGCTTTCAGCCTGTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>SNPs
SSSS-SSSSSS---------S----S-----------S--SS------------------SS-S----------------
-------------S-------S---S------S--SS----S-------S------------------------------
--------------------------SS----S------S------------S------------S--------------
---------------S-SSS-SSSSSSSSSSSSSSS----S---------S---------S-------S-------S-S-
-------------------SS------------S----S-------------------S----------SS---------
---------S-S-------------------------------------------S------------------------
-------S----------------------------------------------------SSSSSSSSSS----------
--------------S--------------------------------------------------------SSS------
S--------------SS-SSSSS---S-----S------S--------------S-------------------------
---------------------------------------------------S-----------------SS---------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-------------------------S--------------------------------------------------S---
------------S---------------------------------------------------SSS-------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S--------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S------------------------------------------------------S----------------------
------------S-----SSS-----------------------------------------------------------
--S-----------------------------------------------------------------------------
---S--------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------------------------------------S-------------------------
----------S-------------S-------------------------------------------------------
----------------------------------------------------S---------------------------
-S---------------------------------------------------SSSSSSSSSSS------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S------SS--------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS---------S-------------------------------------------------------------
-----------S----------------------S------S-S------------------------------------
---------------------------SSS------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------------------SSS------------S------------------------
-----------------------------S--------------------------------------------------
-----------------------S------------------------S---------S---------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S-----------S--------------------------
-------------------------------------------S---------------S------------------S-
S-------------
>forward_986
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TGGCGATGGTGATACGTACG------------------------------------------------------
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>reverse_2004
--------------------------------------------------------------------------------
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---AGCCAAGCTGAGGGAGGAG----------------------------------------------------------
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>forward_1818
--------------------------------------------------------------------------------
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---------------------------------------GGACTTCCTCCAGACGCTG----------------------
--------------------------------------------------------------------------------
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--------------
>reverse_3384
--------------------------------------------------------------------------------
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-----------------------TGGGACAAACTCCAGTGACC-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
