>input_sequence_46062
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---------------------------------------------------------------ATGAGCACGAAATTGCT
CAACAGCTTGAGCCTGACGAGGCTCTTAGGACTGCGAAGAAACCCAATTGGTGGGTACAGCGTATTTATTTTGTCTTATT
TGATCATGGAAGGTGCTCATCACATATATGACTCCTTGCTTGTGTATTTTTTT--CTTGCTAGACTTATACACAGCATCG
CGAGCATGGATCTCTAGCACATCATTTTCTGGTGTTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGC
AGATTCTTGGAAAGATGCTGACTTCCGTGGTGTTTATCGGGTACTTGCTTGATATATCCTATTAGAATAACTACCCGTAT
TTTGGTTCTCATG----------------TTGACACTCGGTTGACTTGTTTGTTTTGTTAGGCCATTATTTGTGGCAGCG
TTGGACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGGGGCATGTTT
GACCAGAGGAGAGTAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGCGCAGCTTGG
TGCATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTCCTTTCTACTCTATAGCACGTGATTCTGTTTTTTT-CCTTGTGA
TGTGAAGTGAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTAT-----TATGTCTTATT-CAG
TGCTGCAGTGTATGTTGAGGGTGAGATTGAGACTAGAGTCTACAATGATGACATCAATAATCTAGTGAAAA-TCGTACCT
GAGATCTGTGTGCGGTATGATGGTAAGTTAATCTGAGGTTCAAGTATTTTC--TCTTTCCTTTGGCAATCTGTTTTGTTG
T--AAACATTCGTTAGCCAAATAAACTAATGCAAATGTCTTAGCTGAGCACAAGCTACCTGAGTTATTTCTTGAAGAATT
CCCTGCTGATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAATGCAGCTTTTGGTCA
GAAAACAGACCTACCTAAAGGGAGTGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT-----CTGCCT
GTGGAAACAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCGCTCTCAGTATATTGTGCTATCAT
CTCTGAATTCATGTCATTTTCATTATTTACAGAATTTTTGGTTTTGTTCATTTC-CATTTGTATGATTTTGATGTATGGG
AAATTTAATCTTCTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAGTA
AGTGCAGTCTGTATCTCATTTTTTTT-TCTTATATAAGGGAAGGCATCATGGCATATACTCCCTCCGTTCGGAATTACTT
GTCGCAGAAATGGATGTATGTAGACGTATTTTAGTTCTAGACACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGA
GTAGTAAATAAGTGCAGACCATCGGACAGGCCGTGTTGTTGTTCTTTTCAGTGCTCTTCGCTATGTCCGTGAACAGACTT
GTGTGCATAAAGAATCACATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGGGG
AGGGGCTATTTTAG------------------------------------------------------------------
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-----------------------------------------------------------
>chr3A_1_TraesCS3A01G322900
ATCTCGTGGGATTCGGTCGGCGC-TTGTCTTTGGTGGATCCGGTCTTCTTTCGTGTGCGTCCGTGTGTCTGCAGATTAGA
TCTTTCCGATCAT-GCTTCTCTTCATCGTTGGCGGTTGCTGTTTTGGTGCGCTAATTCTATGAAGTCTTAGCACAACGGC
TTCCCGATTGTCGACTACAACAATGTTTGTACGGCTCTGATGAGAGAGGTGCGATGATGGCGGCGCGTCTTTGCCTCGCC
CTAGGTAGTCTAGACACCTGAATGTAATTTTTATTTTTGATGTTCTATAAGATATTATTACATCTATCTTATACAGTATA
TATGTTTAAAAAGAAGGTAAAATCAAACCTTTACTTTCCATCCGCGAAAATCCATTTCATCCACCCCGATTTTCTCTCTT
GACTTACTCAGCCCGTCCCTTCTTCGATCTTCCTCGCCTGACCTAATGCTTTGACCTAACGAAGTTTCAACCGGGCCAAT
TG----CGGA-GTAAACCCACCCTAAAATCTTCCGCCGGTGCCCCTGAGCT------GCCGCCGCCGTAGCTTGGCGTCA
GCGCGGAGG------CCCGCTCCCGCTCGCCCACCCAACCCCT---CCGCCTCTCACGCGCGTCGCCGCCGTCGCCGTTT
CCGTTCTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCATTTTTGAGGTATGACCGCCGC
ATAGTCACCCACCCAGTGATCAATTGAACCGACCTCTACAAGTTCCAGGATGAGATTAGTACATCTAGATCCGACCCTGT
CAACAGAGGATTAGATTTTGAGAGATATATAGTGCCCCCTAAGGGCAAATCAAGCAATAAGTAGTTAACATTTTGCTGTG
CGTTCGTGCTACATCACTGGCTTTCCGATGAGAAGCTTTTAGGAATTACACACAAG-CTAGCCGCATTCCTTTGTTATTG
AGGTTGTTTAATTATGTGATTATGTCATTTCACCCCTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCT
CAACAGCTTGAGCCTGACGAGGCTCTTAGGACTGCGAAGAAACCCAATTGGTGGGTACAGCGTATTTATTTTGTCTTATT
TGATCATGGAAGGTGCTCATCACATATATGACTCCTTGCTTGTGTATTTTTTT--CTTGCTAGACTTATACACAGCATCG
CGAGCATGGATCTCTAGCACATCATTTTCTGGTGTTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGC
AGATTCTTGGAAAGATGCTGACTTCCGTGGTGTTTATCGGGTACTTGCTTGATATATCCTATTAGAATAACTACCCGTAT
TTTGGTTCTCATG----------------TTGACACTCGGTTGACTTGTTTGTTTTGTTAGGCCATTATTTGTGGCAGCG
TTGGACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGGGGCATGTTT
GACCAGAGGAGAGTAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGCGCAGCTTGG
TGCATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTCCTTTCTACTCTATAGCACGTGATTCTGTTTTTTT-CCTTGTGA
TGTGAAGTGAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTAT-----TATGTCTTATT-CAG
TGCTGCAGTGTATGTTGAGGGTGAGATTGAGACTAGAGTCTACAATGATGACATCAATAATCTAGTGAAAA-TCGTACCT
GAGATCTGTGTGCGGTATGATGGTAAGTTAATCTGAGGTTCAAGTATTTTC--TCTTTCCTTTGGCAATCTGTTTTGTTG
T--AAACATTCGTTAGCCAAATAAACTAATGCAAATGTCTTAGCTGAGCACAAGCTACCTGAGTTATTTCTTGAAGAATT
CCCTGCTGATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAATGCAGCTTTTGGTCA
GAAAACAGACCTACCTAAAGGGAGTGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT-----CTGCCT
GTGGAAACAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCGCTCTCAGTATATTGTGCTATCAT
CTCTGAATTCATGTCATTTTCATTATTTACAGAATTTTTGGTTTTGTTCATTTC-CATTTGTATGATTTTGATGTATGGG
AAATTTAATCTTCTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAGTA
AGTGCAGTCTGTATCTCATTTTTTTT-TCTTATATAAGGGAAGGCATCATGGCATATACTCCCTCCGTTCGGAATTACTT
GTCGCAGAAATGGATGTATGTAGACGTATTTTAGTTCTAGACACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGA
GTAGTAAATAAGTGCAGACCATCGGACAGGCCGTGTTGTTGTTCTTTTCAGTGCTCTTCGCTATGTCCGTGAACAGACTT
GTGTGCATAAAGAATCACATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGGGG
AGGGGCTATTTTAGTTGCGACCTGAGGAACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCAGGGCAAC
TTTGCCAAAGCACTTTTATTAGGTCCATTGATAATAACTGGACTGGAGAACTGAAAGCCCTTGTAGATGCAAGCGGTGCT
TTCTCTGCCTTTTTGAGCGTATGGGGGCCTCTTCTGGTTGTTGAAATCGAGTTTGTATTGAGCTGCAGGAGAGAAACG--
-GTCTATTGAGACCTCTGAAGATGCTTTTATTTTTCACAGCTACTAGTACTGATGCCCCGTGCTCGTAACAATGACCAGT
CTCAGTGTCTATTCATAA-ACTTGGCATCTTTGTTTCAAGCCCTACGTGCTAGCATACCATATCGAAGTTAGTTCGCTCA
TATCTGAATTTACTTCTCTGCTGCAAAAATACAGATCCTGATGCTCCTGTCTCTTTTTGTGTTGGTCTGACTGGCCTGTC
TAGAGCGTTTCCATTTTCTGGTTGCTCTATCTTC-TATTTTCATTTTTCTATGAGGTAAATACACTAGGAGTCATACAAC
TTACACGCGACAGTCAGTTTGGTGTATAAATTTATAAAATACGTGATTGCAGTCATTAAACTTGCGTGGACGTGCAAATA
CGATTACATTTGCTTGAGTTGCATGCCAAGGCCCACTGTCAGTGACAAAACCCTCAGATTTTCTTTCAACTACGAACAAA
AGCCCATGGGGCCCACATGTCAGTGTACAGTATAAATAAATTTCGTTGGAAAAATATGAAGAGCGGGAGTTTTCTTTTAA
CTACGCAGAAAAGCCATGGGGCCCACATGTCAGTGTACAGTATAAATAAATTTCGCTGGAAAATGTAAAGAGCGGGAGTT
CAAACCCACGACCAGATGCAGAAATGCGGCCGTCCTTGCCACCGAACCTGATGATTCTTGATGCCAGGACTGCTAAATTA
TATATATCCTTTAGTTTAAGATCACTTTTTTTTGAATCCAAGTACACATTTAAGATGGG
>chr3D_1
ATCTCGTGGGAT-CGGTCGGCGTTTTGTCCTCAGTGGATCCGGTCTTTGTTCGCC--------TGTGTCTGAATATTAGA
TCCTTTCGATCTACGCTTCTCTTCATCGTCGCAGTTGCTGTTTCTGGTGCGCTAGTCCTATGCGGCCTTAGCATGACGAC
TTTCTGACTGTCGACTACACCAAGGTTTGTCCGGCTCCAATGAGGAAGGGGTGATGACGGCGAAGCGTGGTCTACGG---
---------------ACCTGAATGTAATTTTTATTTTTGATGTTCTTTGTACTATCTTG--ATATTTGATGAATAGTTTG
GAAGTTAAAAAAAAAAGGGTTCGTGGTCCCTTG----------------------------CACCGCGATTTTTCCTCTC
GACTCACTCAGCC--------CTTCGATCTTCCTCGCATGAGCTAATGCTTTGACCTAACGAAGCTTCAACCGGGCCAAT
TG----CGGATGTAAAACCACCCTAAAATCTTCCGCCGGTGCCCCTGAGCTGCCGTCGCCGTCGCCGTAGCTTGGCGTCA
GCGCGGAGGCCCGCTCCCGCTCCCGCTCGCCCACCCAACCCCT---CC---TCTCACGCGCGTCGCCGCCGTCGCCGTTT
CCGTTCTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCATTTTTGAGGTATGGCCGCCGC
ATAGTCACCCACCCAGTGATCAATTGAACCGGCCTCTACAAGTTCCAGGATGAGATTGGTACATCTAGATCCGACCCTGT
CAACAGAGGATGAGATTTTGAGAGATATATGGTGCCCCTTAAGGGCAAATCAAGCCATAAGTAGTTAACATTTTGCTGTG
CGTTCGTGCTACATCACTGGCTTTCTGATGAGAAGCTTTTAGGAATTACACACAAG-CTAGCCGCATTCCTTTGTTATTG
AGGTTGTTTAATTTTGTGACTATGTCATTTCACCCTTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCT
CAACAGCTTGAGCCTGAGGAGGCTCCTAGGACAGCAAAGAAACCCAATCGGTGGGTACAGCGTATTTATTTTGTCTTATT
TGATCATGGAAGGTGCTCATCACATATATGACTCCTTGCCTGTGTATTTTTTTTTCTTGGTAGACTTATACACAGCATCG
CGAGCATGGAGCTCTAGCACTTCATTTTCTGGTGCTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATCTTGC
AGATTCTTGGAAAGATGCTGACTTCCGTGGTGTTTACCGGGTACTTGCTTGATATATCCTATTAGAATAACTACTCGTAT
TTTGGTTCTCATG----------------TTGTTTGT---------------TTTTGTTAGGCCATTATTTGTGGCAGCG
TTGGACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATACTGTGACTGTATTTACTGTCGGGACTGGAGGCATGTTT
GACCAGAGGAGGGCAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGAGCAGCTTGG
TACATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTGCTTTCTACTCTATAGCACGTGATTCTGTTTTTTTGCCTTTTGA
TGTGAAATCAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTAT-----TATGTCTTATTTCAG
TGCTGCAGTATATGTTGAGGGTGATATTGAGACTAGAGCCTACAATGATAACATCAATAATCAAGTGAAAA-TCGTACCT
GAGATCTGTGTGCGGTTTGATGGTAAGTTAATCTGAGGTTCAAGTAATTTT--TCTTTCCCTTGGCAATCTGTTTTGTTG
T--AAATATTCGTTAGCCAAATAAACTAATGCAAATGTG--------GCACAAGCTACCTGAGTTATTTCTTGAAGAATG
CCCTGCTGATTTTTGTTCTCTTGCGGTACCCCACCCATCC-----------------CTACCAAA-GCAGC--TTAGTTA
GAAAACAGACCTACCTAAGGGGAGCGGGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT-----CTGCCT
GTGGAGTCAAGGACTAGAT--GTAGTTCTTCATGCAGCTTAATTTGGACTCCCCTCACTCTCAGTATATTGTACTATCAT
CTCTGAATTCATGTCATTTTCATTATTTACAGAAATTTTGCTTTTGTTCATTTC-CATTTGTATGTTTTTGATGTATGGG
AAATTTAATCTTTTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAGTA
AGTGCGGTCTGTATCTCATTTTTTTTTTCTTATATAAGGGAAGGCATCATGGCATATACTCTCTCCGTCCCACAATATAA
GAAGTTTTTTGACACTACACTAATGTCAAAAAATGTCTTACATTGTGGG----------------------ACGGAGGGA
GTAGTAAATAAGTGCAGATCATCGGACAGGCAGCGTTGTTGTTCTTTTCAGTGCTCTCCGCTATGTCCGTGAACAGACTT
GTGTGCATAAAGAATCGCATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGGGG
AAGGGCTATTTTAGTTGCGACCTGAGGGACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCA-GGCAAC
TTTGCCAAAGCACTTTTATTAGGTCCATTGATAGTAACTGGACTGGAGAACTGAAAGCCCTTGTATATGCAAGCGGTGCT
CTCTCTGCCTTTTTGAGCGTATGGGGG-CTCTTCTGGCTGTTGAAATCGAGTTTATATTGAGCTGCAGGAGAGAAACGGC
GGTCTATTGAGATCTCTGAAGATGCTTTTATTTTTCACAGC---TAGTACTGATGCCCCGTGCTCGTAACAATGACCAGT
CTCAGTGTCTATTCATAATACTTG-CATCTTTGTTTTAAGCCCTACGTGCTAGCATACCATATCGCAGTTAGTTGGCTCA
AATCTGAATTTACTTATCTGCTGCAGAAATACAGCTCCTGATGCTCATGTCTCTTTGTCTGCTGGTCTGACTGGCCTGTC
TAGAGTGTTTTCATTTTCTGGTTGCTCTATCTTTTTATTTTCATTTTTCTATG---------------------------
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>chr3B_420
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---------------------CTTCGATCTTCCTCGCGTGACCTAATGCTTTGACCTAACGAAGCTTCAACCGGGCCAAT
TGGATGCGGATGTAAAACCACCCTAAAATCTTCCGCAGGTGCCCCTGAGCT------GCCGCCGCCGTAGCTTGGCGTCA
GCGCGGAGGCCCGCTCCCGCTCCCGCTCGCCCACCCAATCCCTCCGCC---TCTCACGCGCGTCGCCGCCGTCGCCGTTT
CCGTTGTAGCCCGTCGCGTCCCTGCTGTCTCCACCCCCGTCCGCAGTCCTCGACATCCGTTTTCGAGGTATGGCCGCCGC
ATAGTCACCCACCCAGTGATCAATTGAACGGACCTCTACAAGTTCCAGGATGAGATTAGTACATCTAGATCCGACCCTGT
CAACAGAGGATGAGATTCTGAGAGATATATAGTGCCCCTTAAGGGCAAATCAAGCAATAAGTAGTTAACATTTTCCTGTG
CTTTCGTGCTACATCACTGGCTTTCTGA--AGAAGCTTTTAGGAATTACACACAACCCTAGCCGCATTCCTTTGTTATTG
AGGCTGTTTAATTATGTGGTTATGCCATTTCACCCTTTTCCCCTTTATGTATGTAGACCTACCATGAGCACGAAATTGCT
CAACAGCTTGAGCCTGAGGAGGCTCTTAGGACAGCAAAGAAACCCAATTGGTGGGTACAACGTATTTATTTTGTCTTATT
TGATCATGGAAGGGGCTCATCACATATATGACTCCTTGCTTGTGTATTTTTTTTTCTTGGTAGACTTATACACAGCATCG
AGAGCATGGAGCTCTAGCACTTCATTTTCTGGTGTTCATGAGAAGAATGGCATGGGCGTCGAGGCAGATGGTGATGTTGC
AGATTCTTGGAAAGATGCTGACTTCCGTGGTGTTTACCGGGTACTTGCTTGATATATCCTATTAGAATAACTACTCATAT
TTTGGTTCTCATGTTGACACTCGGTTGGCTTGTTTGT---------------TTTTGTTAGGCCATTATTTGTGGCAGCG
TTGGACAAGTGCCTGTGCAGAAAAAATTGAGGAACGGGCATATTGTGACTGTATTTACTGTCGGGACTGGAGGCATGTTT
GACCAGAGGAGGGCAGGTGCTGAAAACTTGCCAATGCCAGCTCAGTGGCATCGCATAGCTGTTCATAATGAGCAGCTTGG
TACATATGCTGTTCAAAAGTTGGTTAAGAAGTATGTGCTTTCTACTCTATAGCACATGATTCTGTTTTTTTGCCTTTTGA
TGTGAAATCAAAACTAAAGTTCAGATTCTTAATTCACCAAGGATATACCGTGCTTATTAT-----TATGTCTTATTTCAG
TGCTGCAGTATATGTTGAGGGTGATATTGAGACTAGAGTCTACAATGATGACATCAATAATCTAGTGAAAA-TCGTACCT
GAGATCTGTGTGCGGTTTGATGGTAAGTTAATCTGAGGTTCAAGTATTTTTTTTCTTTCCTTTGGCAATCTGTTTTGTTG
T--AAACATTCGTTAGTCAAATAAACTAATGCAAATGTGTTAGCTGAGCACAAGCTAACTGAGTTATTTCTTGAAGAATT
CCCTGCTGATTTTTGTTCTCTTGTGGTACCCCATCCATCC-----------------CTACCAAA-GCAGC--TTAGTTA
GAAAACAGACCTACCTAAAGGGAGTGAGACTAGCTCTCCTGTTGCTTTTCAATAAAAGGAGAGACAACT-----CTG--T
GTGGACTCAAGGACTAGAT--GTAGTTCTTCATGCAGCTTCATTTGGACTCCCCTCACTCTCAGTATATTGTGCTATCAT
ATCTGAATTCATGTCATTTTCATTACTTACAGAATTTTTGGTTTTGTTCATTTC-CATTTGTATGATTTTGATGT-TGGG
AAATTTAATATTTTCAGGCAAGATACACTTGGTTCAATCTGGGGGCAGTGATGTCAGCAAATCATTGGAAGAGTTAAGTA
AGTGCGGTCTGTATCTCTTTTTTTTT--CTTATATAAGGGAAGGCATCATAGCATATACTCCCTCCGTCCCACAATATAA
GATGTTTTTTGACACTATACTAATGTCAAAAAATGTCTTACATTGTGGG----------------------ACGGAGGGA
GTAGTAAATAAGTGCAGACCATCGGACAGGCAGTGTTGTTGTTCTTTTCAGTGCTCTCCGCTATGTCCGTGAACAGACTT
GTGTGCATAAAGAATCACATTAACCTGTAACATGTGTTCATCACATAAGATCGTCATAACAGCCTTCCTTTTGGCAGGGG
AGGGGCTATTTTAGTTGCGACCTGAGGGACAATGAGCAGCAGGAGGAGTTGGCCAACTGGAGTGTTAGATTCAGGGCAAC
TTTGCCAAAGCACTTTTATTAGGTCCATTGATAATAACTGGACTGGAGAACTGAAAGCCCTTGTAGATGCAAGCGGTGCT
CTCTCTGCCTTTTTGAGCGTATGGGGGCA-CTTCTGGTTGTTGAAATCGAGTTTATATTGAGCTGCAGGA--GAAACGGC
GGTCTATTGAGATCTCTGAAGATGCTTTTATTTTTCACAGC---TAGTAATGATGCCCCGTGCTCGTAACAATGACCAGT
CTCAGTGTCTATTCATAATACTTGGCGTCTTTGTTTTAAGCCCTACGTGCTAGCATACCATATCGCAGTTAGTTCGCTCA
AATCTGAATTTACTTATCTGCTGCAGAAATACAGCTCCTGATGCTCATGTCTCTTTGTCTGCTGGTCTGACTGGCCTGCC
TAGAGTGTTTTCATTTTCTGGTTGCTCTATCTTTTTATTTTCATTTTTCTATG---------------------------
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>chr6D_1590
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------------------------------GTATGTGCTTTGTAC-CTATGGCTTGTGATTCAGTTTTCCA-CCTTGAGA
TATGAAATCAAAACTTCAGCTCATATTCTAAATTCACCAAGGATATACTGTGGTTATTAT-----TATGTCTT-------
TGCTGCAGTCTACGTTGAGGGTGATACTGAGACTAGAGTCTATAACGACAACATCAATAATTAACTGAAAAAACATACCC
GAGATGTGTGTGCAACATGATGGTATGTTAATCTGAGGTTTGAGCATTTTTTT-C----CTATGGCGATCTGTTTTGTTT
TAGAAATATTCATTAGTCAAATTTACTAATGCAAATGTGTTAGCTGAGCACGAGCTACCTGAGTTATTTCTTGAAGAACT
CCCTGCTAATTTTTGTTCTCTTGAAATACCACACCCACCC-----------------CTATAAAACT-------------
------AGGCATACCAACAGG------GACTAG--CTCCTGTGGCTTTTCTAT-AAAGGAGAGACAACCGGGAGCTGCTT
GTGGAGTCAAGGGCTCTTAACGTAGTTCTTCATGCAGCTTAATTTGGACTCC------TCTCAGTATATCATGTTATCAT
TTCCGAATCCATGGCATTCTCATTCTTTACAGAATTTTAGGTTTTGTTCATTTTTC-----------GTTCATGTATGGG
AAATTTAATCTTTTCAGGCAAGCTTCACTTGGTTCAATCTGGGGATAGTGATGTCGACAAATCACTGGAACAGTTATGTA
AGTGCAGTATGTATCTCTTTTTT---------------------------------------------------------
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>chr6B_1590
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------------------------------GTATGTGCTTTGTACTCTATGGCTTATGATTCAGTTTTCCA-CCTTGAGA
TATGAAATCAAAACTTCAGATCATATTCTAAATTCACCAAGGATATACTGTGGTTATTAT-----TATGTCTT-------
TGCTGCGGTCTATGTTGAGGGTGATACTGAGACTAGAGTCTACAACAACAACATCAATAATTAACTG---A-ACATACCT
GAGATGTGTGGTCAACATGATGGTATGTTAATCCGAGGTTTGAGCATTTTTTT-C----CTATGGCGATCTGTTT-GTTT
TAGAAATATTCATTAGTCAAATTTACTAATGCAAATGTGTTAGCCGAGCACGAGCTACCTGAGTTATTTCTTGAAGAACT
CCCGGCTAATTTTTGTTCTCTTGAAATACCACACCCACCC-----------------CTATAAAACT-------------
------AGGCATACCAACAGG------GACTAG--CTCCTGTGGCTTTTCTGT-AAAGGAGAGACAACCGGGAGCTGCTT
GTGGAGTTAAGGGCTCTTAACGTAGTTCTTCATGCAGCTTAATTTGGACTCC------TCTCAGTATATCGTGTTATCAT
TTCCGAATCCATGGCATTCTCATTCTTTACAGAATTTTAGGTTTTGTTCATTTTTC-----------GTTCATGTATGGG
AAATTTAATCTTTTCAGGCAAGCTTCACTTGGTTCAATCTGGGGATAGTGATGTCAACAAATCACTGGAAGAGTTAAGTA
AGTGCAGTCTGTATCTCCTTTTTTT-------------------------------------------------------
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>chr6D_1610
--------------------------------------------------------------------------------
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--------------------------------------------------AGCATATGATTCAGTTTTCCA-CCTTGTGA
TATGAAATCAAAACTTCAGCTCAGATTCTTAATTCACCAAGGATATACTCTGGTTATTATTGTCTTATTTCAG-------
TGCTGCAGTCTATGATGAGGGTGCTAATGAGACAAGAGTCTACAATGACAAGATCCATAATCAACTGAAAA-ACATACCC
GAGATCTGTGTGCAACATGATAGTATGTTAACCTGTGGTTCGAGTATCTTTTTTC----CTTTGGTGACATGTTTGGTTG
TAGAAATATTCGTTAGCAAAATAAACTAATGCAAATGTGTTAGCTGAGCATGAGCAACCTGAGTTATTTCTTGAAGAATT
CCCTGCTAATTTGTGTTCTCTTGAAATACCCCACCATCCCTACCAAATGCAGCTTAACTAGAAAACT-------------
------AGGCCTACCTACAGG------GACTAA--CTCTTGTGGCTTTTCTAT-AAAGGAGAGACAACTGGGACCTGCCT
GTGGAGTCAAGGACTC-TAACGTATTTCTTCATGCAGCTTAATTTTGACTCC------TCTCAGTATATGGTGCTATCAT
TTATGAATTCGTGGCATTCTCATTCTTTACAGATTTTTTGGTATTGTTCGTTTGTCATTTGTACGATGTTCATGCATCGA
AAAATTAATCTTTCCTCACAAGATTCACTTGTTTCAATCTGGGG------------------------------------
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>chr2D_1994
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---------------------------------------------------------------AATGCAGC--TTAGTTA
GAAAACAGACCTACCTACTGGGAGTCAGACTAG--CTCCTGTGGCTTTTCGATAAAAGGAGAGACAACTGGGAGCTGCCT
GTCAAGTCAAGGACT-TTAATGTAGCT-TTCATGCAGCTTAATTTAGACTCCCCTCATTCTCAGTAGATTGTGCTTTCAT
CTCTGAATTCATGACATTCTCATTATTTGCAGAATTTTTGGTTTTGTTCGTTTC-TATTTGTAAGATCTTGATGTATGGG
AAATGTAATATTTTCAGGCAAGATACACTTGGTTCAGTCTGGGGTCAGTGATGTCAGCAAATCATTGGAAGAGTTCAGTA
AGTGCAGTCTGTATTTCATTATTTTT--CTTAC--AAGGGAAGGCATCACGGCATA------------------------
--------------------------------------------------------------------------------
-TAGTAAATAAGTGAAGACCATCGGACAGGCAAC---GTTTTTCTTTTCAGTGCTCTCCGCTGTGTCCGTGATCAGATTT
GTGTGCATAAAGAAGTGGATGAACCTCTAACATGTGTTCATCACATAAGATCATCATAACAACCTTCCTTTTGGCAGGGG
AGGGGCTATTTTAGTTACGACCTGAGGCACAACGAG---CAGGAGGAGTTGGCCAACTGGAGTGCTAGATTCAGGGCAAG
TTTGCCTAAGCACTTTTATTAGTTCCGTTGATAATACCAGGACTGGAGAACTGAAAGCCCTTGTAGATGCTAGAGGTG--
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>SNPs
------------S---------S------S-SS--------------SS----SSSSSSSSSS--------S-S------
--S--S-----SS----------------S-SS-S-SSSSS--S----------S-S-----SS-S-------SS---S-
--S-S--S-----------S---S------S------SS-----SS---S-S-----S----SS----SS-SSS-SSSSS
SSSSSSSSSSSSSSS-------------------------------S-SSSS---SS-SSS--S-S-SS-SS-S---S-S
S-S---S-----S--S-SSSSSSSSSS--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------SS----S
----S--------SSSSSSSS----------------S--------------------------S---------------
----------------S---------------------------------------------------------------
------------------------------------------------SSS-----------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------S--------------------------S-----------------------------------------
-------------------------S------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------S--------------S--S--------------------------------------------
-----------------------------------------------------------S--------------------
----------S---------S-----------------------------------------------------------
------------------------------------S-------------------------------------S-----
--------------------------------SSSS-SSSSSSSSSSSSSSS----------------------------
----------------------------------------------------------------------S---------
-----------S-S--------------------------------------------------------S---------
-S----------------------------------S-------------------------------------------
------S-S-----------------------------------------------------------------------
---------S--------------S-------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------------------------------SS--S--S-
--------------------------------------------------------------------------------
-----SS-------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------S-SSS-S--SSS
-SS-SSSSSSSSS-SSSSSS--SSSSS-SSSS-SS---SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS---------
-------------------------------S-------------------------S----------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------------------------S-------------------------
------------S----------------------------SSS------------------------------------
------------------------------------S----------------------------S--------------
S--------------S---------S--------S-----------S---------S-S--S------------------
-----S----S----------------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_248
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTTTGCCTCGCC
CTAGGTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_1511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GGGCATGTTT
GACCAGAGGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_252
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCCTCGCC
CTAGGTAGTCTA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_1591
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CGCAGCTTGG
TGCATATGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_497
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGG
CCAATTGCGGAGTAAAC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTCCGAACGGAGGGA
GTAGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1532
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGCATGTTT
GACCAGAGGAGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_3450
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GGCCCACATGTCAGTGTACA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
