>input_sequence_46034
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-------------------------------------------------------ATGGCGGAAGATGCTGGTAGTCGGA
TTGAGGTGGCCAACCTCCTTTCCCTCGGCGAGGACCTCGTCGGGGTGCTCCTGGGCAGCAAGGACGGCGAAGCCCTTGCG
CAGGCCTGCGACGGGGCACGGATGCTGCGCTCCGCCTGCTGCTCCGACTCCGGGGACCTCGAGCTCCAAGTCAAAGGTCC
GTTCTCTCCTGCTCTGTTGAGATTCCGATTCATGTCGTGTATAGGAGTCCTCGTGTGGTGAAGACGA-TTTGGTGCTCAA
GTTCAGTGGGGGAAATTTAGA----CTGGCAATTTTTGAGTACGTGTGGTTGAAAATCCTGCTTAAAAGGGCCTGATTTT
GAAACAAAAACTAGCATATCTAATTTACCTAGCATTCCAGCACTTGCATACCAAAGGATTCAAGGAACACTTTACATCCA
TTAATTCAAGC----------------------------------ACCTTT-----------------------------
-----GAAATAATTAGAGATGTGGTGATGGTTGACTATTTGAGAATTTGACAATAGAAGTGGCATGCTTCTTTTTGTGCA
ACAGAGTATCAGGAAAAATTAAACTCCTTCAAGGAAAAGTTAGACAAAGCAAAAGCTGAAACAGTTACTGATGAAGAACT
GAACACGCTGCGAAATGAGATGGAGGAGAAACTCCGGGGGGAGCAACAGCTTCGCCAAGACTTAAGATAAGTTCTTATTT
CAACATCTGTATCATTATCATCTGAATTGCTACCTTAAGTTGGATTGCTGATACAGTTTATGTTGTCAACACAGCGGTGA
GTGCTGAGCTTGATAACCTAGACCGCCAAAGGGCTTCTATAGAAGAAAGAAAGGACGCTGTCAAGAAGAAGGAGAAAGAC
ATGCTGAAGGCACAGTAAGTCCAGATTTGT-------ATCACCGAGTACATGTATGTACATTTTGCTTTCGTAACTGCAC
ACATGCCATCAGTGGGAAACTATTTGGATGGTCAAGCTAGCTAGAAAATCTCATCTGGGCTGTATAACTAGCAGCACCAT
TACGTTGTCCATCCCAACAGTAAGTTATATGTAGTGGCCTGTTTGATATTCACCGTTATATAAGAACTAGGATTGAAGTT
CAAATCGGTATTTGTAGTTCATTACTAAATTATGAATTTGGATAATGCTACCGCTCCCTTATCTTCCCCCTGACATATTT
TGCCATTGCATTTCAT----------TGCACACAAGATTGTCGAGCAAAGTTTGGTGATTTTTCTAAACACTGGTTGGAA
TGTAAATGACTGGTTCCTCCTAATTCAGTATGAGTTGAGTTTCAGGACTGTTGCTTGTACCGGTTATCCTATTTCGCAGT
TAAATTGACCAACTACATTTTTGTGCAGAAGTATGCTCTCCATGTGTGTGTCAGTTACAAATATCATGCCAGATTTCGAA
GATCAGGAGAAGATTTCTGGATGTATCCTTTCAATATGTTACTGTTTTGGCTTCTTTTCTTGTACTGAAGGACATCAGTT
TCTACCTATGGACGTCAAATAAACT-------------------------------------------------------
----------------------------------------ACTATTCTGCATTTTGTCACTATATTATTTATATCTACAG
CAAACAAAACTTGTGTGCAATCCTTAGCTTTTTATCAGATATTGTTGACAAGAATAGGAAGAAGCTAGATAAGTTCGAAT
TTGAGAAGACAATGTCACCAGTTGAGATCGGCGACAAGCTTTGGAAAATGATTTAG------------------------
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>chr2D_1_TraesCS2D01G311700
TCTACGGCTGCTAGAGCCCTAAA--ATCCACATGCGGATTACTCACCCTCATCCCACCTATCTACCATACATGTGACTGA
GCCACGTTCTCAAAGTAGGCCAGCCGCCCTCCAGTTCTGCGCCTCTAACTCAATCTTTACAAGCACGTCGTCCACCGATG
GCGATGCCCCATTGAAGACAATGCCGTTCCGGTGTTTCCACAACATCCATAGCACCAGTGTTATCCCTGTCCACGCCTCC
TTCCGAAAGTGCTTTTGGGGATTGAGTGTTGTCCACCATTCGACAAGGTTTGAATCTGTGGATGGCGTCCAATCCGGTCT
TCCCCATGTGTTCATGATCTTGGCCCATACCTGTCGTGCTAGAACGCATCCGAGAAGCAAGTGATCCAACGTCTCCGGCG
CTTGGTCACAGAAGGGACACGCCGGCGGGTGCGCCAGCTGTCGTCGTTGAAGCATATCCGCTGTCCAACATCTGTTCCTC
GCCGCAAGCCATATGAAAAACTTACATGTGGGGGGTGCC-------------CGACATCTCCAAATCTGCACAGCTCCCG
CGTTCTCCGTTCTTCCCGCAAAGTGGGCACGGTACGCCGACTGCGCTGAGAATTGTCGTGTGCTCTCCCAGCTCCATGTT
ATGGCGTCATCTATGCCCAGCCGCAGCTCCACGTGCCGGGTCACGTCCACCAGCGCAATGAACTCGAGCAGAGCCTGCGC
GCCCATGTGCGGGGACATATCTTGCCACCAATCCCGCCTGGGCCTGATTGGGCTGTATACAGCCTACCAAGGTCTATTAG
GAAAATTGGAGCCCAAATCTGCCATTCTCCCTACGCTCCATTGTTGGAGAAAGTAGTCCGCCCAAATCGATCAAAAATCC
ATCGCGCCGTTCTCTCGGAAGTCACCGGCGGCGCCTAAACGCCGGTGTCCCACGGAGCCCAATCCATCTCTCTTCACCGG
TTCGCGGCCTGTGGAAAGCGAAAGTGGTTGTTAGGGTTTTGCCGGCGCCTCTCCGATGGCGGAAGATGCTGGTAGTCGGA
TTGAGGTGGCCAACCTCCTTTCCCTCGGCGAGGACCTCGTCGGGGTGCTCCTGGGCAGCAAGGACGGCGAAGCCCTTGCG
CAGGCCTGCGACGGGGCACGGATGCTGCGCTCCGCCTGCTGCTCCGACTCCGGGGACCTCGAGCTCCAAGTCAAAGGTCC
GTTCTCTCCTGCTCTGTTGAGATTCCGATTCATGTCGTGTATAGGAGTCCTCGTGTGGTGAAGACGA-TTTGGTGCTCAA
GTTCAGTGGGGGAAATTTAGA----CTGGCAATTTTTGAGTACGTGTGGTTGAAAATCCTGCTTAAAAGGGCCTGATTTT
GAAACAAAAACTAGCATATCTAATTTACCTAGCATTCCAGCACTTGCATACCAAAGGATTCAAGGAACACTTTACATCCA
TTAATTCAAGC----------------------------------ACCTTT-----------------------------
-----GAAATAATTAGAGATGTGGTGATGGTTGACTATTTGAGAATTTGACAATAGAAGTGGCATGCTTCTTTTTGTGCA
ACAGAGTATCAGGAAAAATTAAACTCCTTCAAGGAAAAGTTAGACAAAGCAAAAGCTGAAACAGTTACTGATGAAGAACT
GAACACGCTGCGAAATGAGATGGAGGAGAAACTCCGGGGGGAGCAACAGCTTCGCCAAGACTTAAGATAAGTTCTTATTT
CAACATCTGTATCATTATCATCTGAATTGCTACCTTAAGTTGGATTGCTGATACAGTTTATGTTGTCAACACAGCGGTGA
GTGCTGAGCTTGATAACCTAGACCGCCAAAGGGCTTCTATAGAAGAAAGAAAGGACGCTGTCAAGAAGAAGGAGAAAGAC
ATGCTGAAGGCACAGTAAGTCCAGATTTGT-------ATCACCGAGTACATGTATGTACATTTTGCTTTCGTAACTGCAC
ACATGCCATCAGTGGGAAACTATTTGGATGGTCAAGCTAGCTAGAAAATCTCATCTGGGCTGTATAACTAGCAGCACCAT
TACGTTGTCCATCCCAACAGTAAGTTATATGTAGTGGCCTGTTTGATATTCACCGTTATATAAGAACTAGGATTGAAGTT
CAAATCGGTATTTGTAGTTCATTACTAAATTATGAATTTGGATAATGCTACCGCTCCCTTATCTTCCCCCTGACATATTT
TGCCATTGCATTTCAT----------TGCACACAAGATTGTCGAGCAAAGTTTGGTGATTTTTCTAAACACTGGTTGGAA
TGTAAATGACTGGTTCCTCCTAATTCAGTATGAGTTGAGTTTCAGGACTGTTGCTTGTACCGGTTATCCTATTTCGCAGT
TAAATTGACCAACTACATTTTTGTGCAGAAGTATGCTCTCCATGTGTGTGTCAGTTACAAATATCATGCCAGATTTCGAA
GATCAGGAGAAGATTTCTGGATGTATCCTTTCAATATGTTACTGTTTTGGCTTCTTTTCTTGTACTGAAGGACATCAGTT
TCTACCTATGGACGTCAAATAAACT-------------------------------------------------------
----------------------------------------ACTATTCTGCATTTTGTCACTATATTATTTATATCTACAG
CAAACAAAACTTGTGTGCAATCCTTAGCTTTTTATCAGATATTGTTGACAAGAATAGGAAGAAGCTAGATAAGTTCGAAT
TTGAGAAGACAATGTCACCAGTTGAGATCGGCGACAAGCTTTGGAAAATGATTTAGGGCCTGGTACCTGCAGATTGTAGT
CATTGTACATTAGCAGCAATTGCATTTGTAGGCTGTTGTGCAAGGTAACCGCCCACCAATCGGAAGAATGCAACTCTCCC
AGTTGCTTCAGATGACCTAGTTGTATGGCATCCTGTTATTCATATCTTGGCAAATATACTAGCTCAGCTCTGTTGTCGAT
CTGGATTTGATTTCCTGCACTGGCATTTCACTCACTTTTAGTTTGAGAAGCCAAATCTCCCTTATATCAGCACCTGCTAC
TCCATACCTCTTAGGCCTGTACGATGTGTAAAATGTAATGTTTGCCCTGTTTCTTTTTGTTGGATGTTTTTGTCACTTTT
ACTTTATGTTGCTCACCTGTATTGTTTAATTTTTTTTCCGAGAAAACGCAAGAGACTTTGCGTTTCATTTCATTGAACAA
GAAGAAATCGGGGGTACAACTTCCAGAAAGGAGGGACACACACACATA----CACGACC----------GTCGTCACCAA
GCGACTACAACTAGGTGAGGAGGTGCCCTCAACTACAGACATGCAACGACATTAGGCCTCGCCCAGC-------------
-------------------------------AGGGCAACGTCAGTGCCATTGCCAAACGCCTCTAGGGGCAGCGTCAGCG
TCAGCGCCATTGCCAAACGCCTCCAGGGACGATTGCAGCCCCATGACTGCCCAGGCCAACGTACCTCGCACCCATGTGCC
TAGAGAGTCGGCGGGCGAAGGGCAGGGCCTGACATGAACAGGTGAAACAATCGTTGGGGAAGCATGGGCGCTGGCATACG
TTGCGATCTGCTCCCTGTGTAGCAGTCTATGCCAGCGCGATGCATCACCAGCCTCCATCTGCCGCATCA--A--ACTCCA
CTTGCAGCCAAAGCAGCGCCTTCAAGAGGGGAACGGCGCTGAGACGCCGCCGCTGCCCGGACCGGGAGACCGGACCTGGG
ATTTCTCCTGGTGCTCGAGGAGGAGATCTGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGACACCCTCGGGCG
>chr2A_1
TCTACGGCTGCTAGAGCCCTAAAGAATCCACATGCAAATTACTCGCTCTCGTCCCACCTATCTACCATACAAGTGACTGA
GCCACGTTCACGTAGTAGGCCAGCCGCCCTCTAGTCATGTGCCTCTAACTAAATCTCTACAAGCATGTCGTCCACCGATG
GCGATGCTCCATTGAAGACAATGTCATTTCGATGCTTCCACAACATCCATAGCACCAGTGTTATCACTGTCCATGCCTCC
GTCTGAAAGTGCTTTTGGGGATTGAGTGATGTCCACCATTCAACAAGCTTTGAATCTGCGGATGGCGTCCAGTCCGGCCT
TCCCCAAGTGTTCATGGTCTTGGCCCATACCTGTCGTGCTAGAACACATCCGAGAAGCAAGTGATTTAACGTTTCTGACA
CTTGGTCACAAAAGGGACATGCCGACGGGTGCGGCAGCTGCCGCCGCTGAAGCCTATCCACCGTCCAGCATCTGTTCCTT
GCCGCCATCCATGTGAAAATCTTGCATGTGGGAGG-----------------CGACATCTCCATATCTGCACCACTCCCA
TGCT-TCTGTTCTTCCCGCAAAGTGGGCACGGTACGCCGATTGCGCCAAGAATTGCCCTGTGCTCTCCCAGGTCCATGCT
ATGGCATCATCAATGCCCAACTGCAACTCCACATGTTGGGTCACGTCCACCAGCGCGATGAACTCGAGCAGGGCCTGGGC
GCCCATGTCCGGGGACACATATTGCCACCATCC-----------------------------------------------
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>chr3D_1
TCTACGGCTGCTAGAGCCCTAA--------CATGCGGATTACTCACCATCATCCCACCTATCTACCATAGATGTGACAGA
GCCATGTTCCCGAAGTAGGCCAGCCGCCCTCCAGTCTTGCGCCTCCAATTCGATCTTTGCAAGCACGTCGTCCACCAATG
GCGAGGCTCCATTGAACACTATGTCGTTTTGGTGTTTCCACAACATCAAGAGCACCAATGATACCACTTTCCACGCCTCC
TCCCGAAAATGCTTTTGTGGGTTGAGTGTTATCCACCATTTCACGAGGTTTGAATCTGTCGATGGCGTCCAATCCGGTCT
TCCCCGGGTGTTCATGATCTTGTCCCATACTTGTCATGCTAGAACGCACCCGAGTAGTAAGTGGTCCAAAGTCTCCGGTG
CTTGGTCGCAGAAAGGACACGCCGACGGGTGTGGCAGTTGTCGTCGTTGAAGTTTATCCGCCGTCCAACATATGTTCCTC
GCGGCAAGCCACGTGAAAAACTTACAAGTGGG-GGTGCC-------------CGTGATCTCCAAATCTACACGGCTCCAG
CGTTCTCTATTCTTCCCGCAAAGTTAGCACGATTTGCCGATCGCGCGGAGAATTCTCCCGTGCTCTCCAAGCTCCATGTT
ATCACGTCGTCCATGCCTTGTCGTAGCTCAACCTGCTGGGTCACATCCACCAGCGCAATGAACTCGAGCAGAGCCTGCGC
GCACATGTCCGGGGATACGTCCTGCCACCATCC-----------------------------------------------
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>chr2A_2
-CTACGGCTGCTAGAGCTCTAAAGAATCCACATGCGGATTACTCGCTCTCGTCCCACCTATCTACCATACAAATGACTGA
GCCACGTTCACGTAGTAGGCCAGCCGCCCTCCAATCCTGTGCCTCTAACTCAATCTTAACAAGCACGCCGTTCACCGATG
GCGATGCTCCATTGAAGACAATGTCGTTTCGGTGCTTCCACAATATCCATAGCATCAGTGTTATCATCGTCCACGCCTCC
TTCCGGGATTGCTTTTGAGGATTGAGTGTTGTCCACCATTCAACTAGCTTTGAATCAGCGGATGGCGTCCACTCCGGTCT
ACCCCAAGTGTTCATGATCTTGGCCCATACCAGTCGTGCTAGAACGCATCCGAGAAGCAAGTGATTCAATGTCTCCGGCA
GTTGATCACAGAAAGGGCATGCCGACGGGTGCGGCAGCTGCCGTCGCTGAAGCCTATCTACCGTCCAGCATCTCTTTCTT
GCCGCGAGCCACGTGAAAAACTTGCATGTGGA-GGGAGGGG------------GATATCTCCATATCTGCACCGCTCCCG
CGTTCTCTGTTCTTCCCGCAAAGTGGGCATGATATGCCGATTGCGCTGAGAATTGCCCTGTGCTCTCCCAAGTCCAAGCT
ATGTCATCATCAATGCCCTGCTGCAGGTCCACATGCTGAGTTATGTCCACCAGCGCAATGAACTCGAGAAGGGCTTGTGC
GCCCATGTCCGGGGACACATCTTGCCACCATCC-----------------------------------------------
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>chr3B_2
-CTACGGCTGCTACAGCCCTAAAGAATCTACATCCGGATTACTCACTCTCGTCCCACCTATCTACCATACAAATGACTAA
GCCACATTCACGCA----GCCAGCCGCTCTCCAGTCCTGAGCCTCTAACTTGATCTTAACAAGCATATCGTCCGCCGATG
CCGATGCTCCATTGAAAACAATGTCATTTCCGTGCTTCCACAGCATCCATAGCACCAGTGTTATCACCATCCATGCCTAC
TTTCGAAATTGCTTTTGGGGGTTGAGTGTTGTCCACCATTCAACTAGTTTTGAATCTGCAGATGGCGTCCACTCCATCCT
ACTCCAAGTGTTCATGATCTTGGCCCATACCTGTCGTGCTAGAATGCATCCGAGAAGCAAATGATCCAATGTCTCTCGCA
GTTGATCACAGAAGGGGCATGCCGACGGGTGCGGCAACTGCCGTCGCTGAAGCCTATCCGTTGTTCAGAATCGGTTCCTT
GTCATGATCCACATGAAGAACTTGCATGCGGGAGGGGGGGTGTGGGGAGGGGCGGCATCTCCATACCTGCACTGCTCCCG
CGCTCTCTATTCTTCCCGCAAAGTGGGCACGATATGCCAATCGCGCTGAGAATTGCCTCATGCTCTCCCAAGTCCTGGAA
ATGGCATCCTCAATGCCCCGCCGCAGTTCCACATGTTGGGTTAGGTCCACCAGTGCAAGGAACTCGAACAGGGCCTGCAT
GTCCATGTCCGGGGACATCTCATGCCATCATCC-----------------------------------------------
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>chr2A_776
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----------------------------------------------------------------------GGTCTAGGAA
GAAAATTGGAGCCCAAACCTGCCATTCTCCTAGT-CTCCATTGTTAGAGAAAGTTGTCCGCTCAAATCCATCAGAAATCC
ATCGCGACGTCCTCCCGGAAGCCACCGGCAGCGCCTGAACGCCGGTGTCCCACGGAGCCCAATCCATCTCTCTTCCCCGG
TTCGCGGCCTGTGGAAAGCGAAAGTGGTTGTTAGGGTTTTGCCGGCGCCTCTCCGATGGCGGAAGATGCTGGTAGTCGGA
TTGAGGTGGCCAACCTCCTTTCCCTCGGCGAGGACCTCGTCGGGGTGCTCCTGGGCAGCAAGGACGGCGAAGCCCTTGCG
CAGGCCTGCGACGGGGCACGGATGCTGCGCTCCGCCTGCTGCTCCGAGTCCGGGGACCTCGAGCTCCAAGTCAAAGGTCC
GTTCTCTCCGGCTCTGTTGAGATTCCGATTCATGTCGTGTTTAGAACTCCTCGTGTGGTGAAGACGATTTTGGTGCTCAA
GTTCAGTGGGGGAAATTTAGGGTCACTGGCAATTTTTGAGTACCTGTGGTTGAAAATCCTGCTTAAAAGGGCCTGATTTT
GAATAAAAAACTAGCATATCTAATTTACTTAGCATTCCAGCACCTGCATACCAAAGGATTCAAGGAACACTTTACATACA
TTAATTCAAGCACCTGTTATGGAAACAAAATAATAACAGTGGGTTACCTTT-----------------------------
-----GAAATAATTAGAGAAGTGGTGATGGTTGACTAGTTGAGAATTTGACAATAAAAGTGGCATGCTTCTTTT-GTGCA
ACAGAGTATGAGGAAAAATTGAACTCCTGCAAGGAAAAGGTTGACAAGTCAAAAGCTGAAACAGTTACTGATGAAGAACT
GAACACGCTACGAAATGAGATGGAGGAGAAACTCCGGGGGGAGCAACAGCTTCGCCAAGACTTAAGATAAGTTCTTATTT
CAACATCTGTATCATTATCATCTGAATTGCTACCTTAAGTTGGATTGCTGATACAGTTTATGTTGTCAACACAGCGGTGA
GTGATGAGCTTGATAACCTAGACCGTCAAAGGGCTTCTATAGAAGAAAGAAAGGATGCTGTCAAGAAGAAGGAGAAAGAC
ATGCTGAAGGCACAGTAAGTCTAGATTTGT-------ATCACCGAGTACATGTATGTACATTTTGCTTTCGTAACTGCTC
ACATGCCATTAGTGGGAAACTATTTGGATGGTCAAGCTAGCTAGAAAATCTCATCTGGGCTGTATAACTAGCAGCACCAT
TACGTTGTCCATCCCAACAGTAAGTTCTATGTAGTGGCCTGTTTGATATTCACCGTTATATAAGAACTAGGATTGAAGTT
CAAATCGGTATTTGTAGTTCATTTCTAAATTATGAATTTGGATAATGCTACCGCTTCCTTATCTTCCCCCTGACATATTT
TGCCATTGCATTTCATTTCATTTCATTGCACACAAGATTGTCGAGCAAAGTTTGGTGATTTTTCTAAACACTGGTTGGAA
TGTAAATGAATGGTTCCTCCTAATTCAGTATGAGATGAGTTTCAGGACTGTTGCTTGTACCGGTTATCCTATTTCGCAGT
TAAATTGACCAACTACATTTTTGTGCAGAAGTATGCTCTCCATGTGTGTGTCAGTTACAAATATCATGCCAGATTTCGAA
GATCAGGAGAAGATTTCTGGATGTATCCTTTCAATATGTTACTGTTTTGCCTTCTTTTCTTGTACTCAAGGACATCAGTT
TCTACCTATGGACGTCGAATAAACT-------------------------------------------------------
----------------------------------------ACTATTCTGCATTTTGTCACTATATTATTTTTATCTGCAG
CAAACAAAACTTGTGTGCAATCCTTAGCTTTTTATCAGATATTGTTGACAAGAACAGGAAGAAGCTAGATAAGTTCGAAT
TTGAGAAGACAATGTCACCAGTTGAGATCGGGGACAAGCTTTGGAAAATGATGTAGGGCCTGGTACCTGCAGATTGTAGT
CATTGTACATTAGCAGCAATTGCATTTGTAGGCTGTTGTGCAAGGTAACCGCCCACCAATCGGAAGAATGCAACTCTCCC
AGTTGCTTCAAATGACCTAGTTGTATGGCATCCTGTTATTCATATCTTGGCAAATATACTAGCTCAGCTCTGTTGTCGAT
CTGGATTTGATTTCCTGCACTGGCATTTCATTCACTTTTAGTTTGAGAAACCAAATCTCCCTTATATCAGCACCTGCTAC
TCCATACCTCTTAGGCCTGTACGATGTGTAAAATGTAATGTTTGCCCTGTTTCTTTTTGTTGGATGTTTTTGTCACTTTT
ACTTGATATTGCTCACCTGTATTGTTTAA---------------------------------------------------
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>chr2B_791
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-----TTGGAGCCCAAATCTGCCATTCTCCTACT-CTCCATTGTTAGAGAGAGTAGTCCGCCCAAATCCATCAAAAATCC
ATCGCGCCGTCCTCCCGGAAGACACCGGCGGCGC---AACGCCGGTGTCCCACGGAGCCCAATCCATCTCTCTTCACCGG
TTCACGGCCTGTGGAAAGCGAAAGTGGTTGTTAGGGTTTTGCCGGCGCCTCTCCGATGGCGGAAGATGCTGGTAGTCGGA
TTGAGGTGGCCAACCTCCTTTCCCTCGGCGAGGACCTCGTCGGGGTGCTCGTGGGCATCAAGGACGGCGAAGCCCTTGCG
CAGGCCTGCGACGGGGCACGGATGCTGCGCTCCGCCTGCAGATCCGAGTCCGGGGACCTCGAGCTCCAAATCAAAGGTCC
GTTCTCTCTGGCTCTGTTGAGATTCCGATTCATGTCGTGTTTAGAATTACTCGTGTGGTGAAGACGATTTTGGTGCTCAA
GTTCAGCGGGGAAAATTTAGAGTCACTGGCAATTTTGGAATACCTGTGGTTGAAAATCCTGCTTAAAAGGGCCTGATTTT
GAAACAAAAACTAGCATATCTAATTTACCTAGCATTCCAGCACTTGCATACCAAAGGATTCAAGGAACACTTTACATCCA
TTAATTCAAGC----------------------------------ACCTGACATGGAAACAAAATAATAACAGTGGGTTA
CCTTCGAAATAATTAGAGATGTGGTGATGGTTGACTATTTGAGAGTTTGACAATAAAAGTGGCATGCTTCTTTT-GTGCA
ACAGAGTATCAGGAAAAAATAAACTCCTTCAAGGAAAAGTTAGACAAGGCAAAAGCTGAAACAGTTACTGATGAAGAACT
GAACACGCTACAAAATGAGATGGAGGAGAAACTCCGGGGGGAGCAACAGCTTCGCCAAGACTTAAGATAAGTTCTTATTT
CAACATCTGTATCATTATCATCTGAATTGCTACCTTAAGTTGGATTCCTGATACAGTTTATGTTGTCAACACAGCGGTGA
GTGATGAGCTTGATAACCTAGACCGTCAAAGGACTTCTATAGAAGAAAGGAAGGATTCTGTCAAGAAGAAGGAGAAAGAC
ATGCTGAAGGCACAGTAAGTCCAGATTTGTTCTCTCTATCACTGAGTACATGTATGTACATTTTGCTTTCGTAACTGCAC
ACATGCCATCAGTGGGAAACTATTTGGATGGTCAAGCTAGCTAGGAAATCTCATCTGGGCTGTATAACTAGCAGCACCAT
TACGTTGTCCATCCCAACAATAAGTTCTATGTACTGGCCTGTTTGATATTCACCGTTATATAAGAACTAGGATTGAAGTT
GAAATCGGTATTTGTAGTTCATTACTAAATTATGAATTTGGATGATGCTACTGCTCCCTTATCTCCCCCCTGACATATTT
GCA------ATTTCATTTCATTTCATTGCACACAAGATTGTCGAGCAAGGTTTGGTGATTTTTCTAAACACTGGTTGGAA
TGTAAATGAATGATTCCTCCTAATTCAGTATGAGATGAGTTTCAGGACTGTTGCTTGTACTGGTTATCGTATTTCGCAGT
TAAATTGACCAACTACATTTTTGTGCAGAAGTATGCTCTCCATGTGTGTGTCAGTTACAAATATGATGCCAGATTTCGAA
GATCAGGAGAAGATTTCTGGATGTATCCTTTCAATATGTTACTGTTTTGGCTTCTTTTCTTGTACTCAAGGACATCAGTT
TCTACCTATGGACGTCAAATAAACTACTCCCTCCGTCCCAAAATAAGTGTCTTAACTTTGTACTAGCTCTAGTACAAAGT
TGTACTAACCTTGAGACACTTATTTTGGGACGGAGGGAGTACTATTCTGCCTTTTGTCACTATATTATTTTTATCTACAG
CAAACAAAACTTGTGTGCAATCCTTAGCTTTTTATCAGATATTGTTGACAAGAACAGGAAGAAGCTAGATAAGTTCGAAT
TTGGGAAGACAATGTCACCAGTTGAGATCTGCGACAAGCTTTGGAAAATGATTTAGGGCGTGGTACCTGCAGATTGTAGT
CATTGTACATTAGC------------------------------------------------------------------
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>chr7D_3025
TTTGATTT------------------------------------------------------------------------
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-------------------------------GTTTTT-CGAGAAAACACAAGAGACTTTGCGTTTCATTTCATTGAACAG
GAAGACATCGGGGGTACAACATCCAGAAAGGAGGGACACACACGCACA----CACATACACGACCCCTAGTCCTCACCAA
GCGACTACAACTAGGTGAGGAGGTGCCCTCAACTACAGACACGCAACGACATTAGGCCTCGCCCAGC-------------
-------------------------------AGGGCA----------------------------------------GCG
GCAGCGCCATTGCCAGACACCTCCAGGGATGATTGCAGCTCCGGGACTGCCCAGGCCAACGTACCGCGCACCCATGTGCC
TAGAGAGTCGGCGGGTGAAGGGCAGGGCCCGACAGGAACTGGTGAAACAATCGTTGGGGAAGCATGGGCGCTGGCATATG
TTGCGATCTGCTCCCTGTGTAGCAGTCTACGCCAGAGCGATGCATCACTAGCCTAAGTCTGCCGCATCA--A--ACTCCA
CTTGCAGCCAAAGCAGCGCCTTCAAGAGGGGAACGGCGCTGAGACGCCGCCGCTGCCTGGTCCGGGAGGCCGGACCTGGG
ATTTCTCCCGGTGCTCGAGGAGGAGATCTGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGGCACCCTCGGGCG
>chr1B_3027
TA--ATAT------------------------------------------------------------------------
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-------------------------------TTTTTT-CGAGAAAACGCAAAAGAG-TTGCGTTTCATTGCATTGAACAG
GAAGACATCGGGGGTACAACCTCCAGAAAGGAGGGACACACACACACA----CACGACC----------GTCCTCACCAA
GTGACTACAGCTAGGTGAGGAGGTGCCCTCAACTACAGACACTCAACGACATTAGGCCTCGCCCAGCCTTGCCTCCAGCC
AAAATGGCGAAGCACCGAGACTCGGAGCAACAGGGCA----------------------------------------GCA
TCACTGCCATTGCAAGACACTTCCAGGGACGAATGCAGCTTCAGGACTGCCCAGGCCGACGTACCTCGCACCCATGTGCC
TAGAGAGTCGGCGGGTGAAGG-CAGGGCCTGATTGGAACTGGTGTAGCATTCATTGGGGAGCGCCA-GCGCAGGCAAACG
TCGCGACCTGCTCCTTGTGTAGCAGTCTACGCCAGAGCGATGCATCGCCAACCACCATCTGTCGCATCAAGA--ACTCCA
CTTGCAGCCAAAGCAGCGCCATCAAGAGGGGAACGGCGTTGAGACGCCGCCGCTGCCCGGTCCGGGAGGCCGGACCTAGG
ATTTCTCCCGGTGCTCGAGGAGGAGGTCCGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGGCACCCTCGGGCG
>chr2B_3029
ATTTT---------------------------------------------------------------------------
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----------------------------------TTT-TGAGAAAACGCAAGAGACTTTGCGTTTCATTTCATTGAACTG
GAAGACATCGAGGGTACAACCTCCAGAAAGGAGGGACACACACACACAAA--CACGACC----------GTCCTCACCAA
GCGACTACAACTAGGTGAGGAGGTGCCCTCAACTACAGACACGCAACGACATTAGGCCTCGCCCAGC-------------
-------------------------------AGGC----------------------------------------CAGCG
TCAGCGCCATTGCCAAACGCCTCCAGGGACGATTGCAGCTCCAGAACTGCTCAGGCCAACGTACCTCGCACCCATGTGCC
TAGAGAGTCGGCGGGCGAAGGGCAGGGCCTGATAGGAACGGGTGAAACAATCATTGGGGAAGCGTGGGTGCTGGCATACG
TTGCGATCTGCTCCCTGTGTAGCTGTCTACGCCAGAGCGATGCATCACCAGCCTCCATCTGCCGCATGA--A--ACTCCA
CTTGCAGCCAAAGCAGCGCCTTCAAGAGGGGAACGGCGCTGAGACGCCGCCGCTGCCCGGTCCGGGAGGCCGGACCTGGG
ATTTCTCCTGGTGCTCGAGGAGGAGATCTGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGACACCCTCAGGCG
>chr3A_3030
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-----------------------------TTTTTTTT-CGAGAAAACGCAAAAGAG-TTGCGTTTCATTGCATTGAACAG
GAAGACATCGGGGGTACAACCTCCAGAAAGGAGGGACACACACACACACA--CACGACC----------GTCCTCACCAA
GTGACTACAGCTAGGTGAGGAGGTGCCCTCAACTACAGACACTCAACGACATTAGGCCTCGCCCAGCCTTGCCTCCAGCC
AAAATGGCGAAGCACCGAGACTCGGAGCAACAGGG----------------------------------------CAGCA
TCACTGCCATTGCAAGACACTTCCAGGGACGAATGCAGCTTCAGGACTGCCCAGGCCGACGTACCTCGCACCCATGTGCC
TAGAGAGTCGGCGGGTGAA-GGCAGGGCCTGATTGGAACTGGTGTAGCATTCATTGGGGAGCGCCA-GCGCAGGCAAACG
TTGCGACCTGCTCCTTGTGTAGCAGTCTACGCCAGAGCGATGCATCGCCAACCACCATCTGTCGCATCA--AGAACTCCA
CTTGCAGCCAAAGCAGCGCCATCAAGAGGGGAACAGCGTTGAGACGCCGCCGCTGCCCGGTCCGGGAGGCCGGACCTAGG
ATTTCTCCCGGTGCTCGAGGAGGAGGTCCGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGGCACCCTCGGGCG
>chr3D_3031
--------------------------------------------------------------------------------
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------------------------------TTTTTTT-CGAGAAAACGCAAGAGACTTTGCGTTTCATTTCATTTAACAG
GAAGACATCGGGGGTAGAACCTCCAGAAAGGAGGGACACACACACACACATACACGACC----------GTCCTCACCAA
GCGACTACAACTAGGTGAGGAGGTGCCCTCAACTACAGACACGCAACGACATTAGGCCTCGCCCAGC-------------
-------------------------------AGGG----------------------------------------CAGCG
TCAGCGTCATTGCCAAACGCCTCCAGGGACGATTGCATCTCCAGGACTGCCCAGGCCAACGTACCTCGCACCCATGTGCC
TAGAGAGTCGGCGGGCGAAGGGCAGGGCCTAACAGGAACGGGTGAAACAATAGTTGGGGAAGCATGGGCGCTGGTGTACG
TTGTGATCTGCTCCCTGTGTAGCAGTCTACGCCAGCGCGATGCATCACCAGCCTCCATCTGCCGCATCA--A--ACTCCA
CTTGCAGCCAAAGCAGCGCCTTCAAAAGAGGAACGGCGCTGAGACGCCGCCGCTGCCCGGTCCGGGAGGCCGGGCCTGGG
GTTTCTCCTGGTGCTCAAGGAGGAGATCTGGTCAGGGTCATGCCAACGCCTCCAAGGAGGTGACGACACCCTCGGGCG
>SNPs
--------------------------------------------------------------------------------
---------S-S-----------------------S--------------------------------------------
-------S---------------S----S------------------------------------S--------------
-----------------------------------------S--------------------------------------
------S-------------------------------------------------------------------------
------------------------S--------S-------------------S--------------------------
--------------------------------S---------------------------------------S-------
-------S--------------------------------S----------------S----------------------
-----------S--------------------S---S-------------------------------------------
--------S---------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS-S
------------------------------SSSSS----------S----------------------S-----------
----------S---S------S--------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
---------S------------------------------S---S-S---------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------S-----
-----------------------------------------------S--------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------------S-----------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S------------------------S---------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
------------------------------S------------------S------------------------------
--------------------------------------------------------------------------------
----S--S-----------------------------S-----------------------------------------S
-----S--------------S-------------------------S-------------------------S-------
-----------------------------------------S--------------------------------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------------------------------S---S------------------------------------
----------------------------------S----S----------------------------------------
-----------------------------S--------------------------------------------------
------------------------------------------------------------S-------S-----------
------------------------------------------------------------------------------
>forward_92
------------------------------------------------------------------------GTGACTGA
GCCACGTTCTCA--------------------------------------------------------------------
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>reverse_1247
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----------------------------------------------GTCCTCGTGTGGTGAAGACG--------------
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------------------------------------------------------------------------------
>forward_618
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--------------------------------------GACTGCGCTGAGAATTGTCG----------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_1896
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-------------------------------------------------------CGCTGTCAAGAAGAAGGAGA-----
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------------------------------------------------------------------------------
>forward_891
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-----------------------------------------------------------------------CAAAAATCC
ATCGCGCCGTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_2355
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----------------------------------TTGAGTTTCAGGACTGTTGCT-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_1210
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GTCAAAGGTCC
GTTCTCTCCT----------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_3402
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------TGCAACGACATTAGGCCTCG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
