>input_sequence_46031
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----------------------------------------------------------------------ATGGGCTCCT
CCGCTGAGAGCAGAAGCAGGATGGGTAGCATAAAGCCCATGGGGATTCAGCTCATCGAGTGTGTCCGTGGCGGCCCTCTC
TCCTTCAGATCATCTCAGGCTCTTGTGTTGGTGCTCACCTTCCTGTCATATGCCAGTTACCATGCCACTAGGAAAACCAC
AAGCATTGTCAAGAGTGTTCTTGATCCCAAGACAACAAACCTGGGCTTGTTGCACTGGCCCAGCCATATGTATCTTCAAG
AACTGAAAGGCGCGGCGAACAACACGGCTCTCCAGAGTGGCTGGGCTCCGTTCAACGGCGAGGATGGCACCAAGCTGCTC
GGCGAGATCGACTTGGCTTTCCTTGGGGTGTATGCCATTGGCATGTTCTTTGCCGGCCATTTGGGTGACCGGGTGGATCT
CAGGATCCTCCTGACCATCGGAATGGTAGGGACCGGGCTGTTCACCGCCGCTTTCGGAGCCGGCTACTGGCTCAACATCC
ACAGCTTCTACTACTTTCTCGGCGTCCAGATGATCGCCGGTCTGTTCCAGTCGTCCGGCTGGCCCTCCGTGGTCGCGGTC
GTCGGCAATTGGTTCGGGAAGAGCAAGAGGGGGCTGATCATGGGGATCTGGAACGCTCACACCTCAGTGGGAAACATTTC
TGGCTCGCTGATCGCGGCTGCCATGCTGAAGTTCGGGTGGAGCTGGTCGTTTGCAGTGCCCGGTGCCATGATTGCGCTGG
TCGGGCTGGCCGTGTTTCTCTTCTTGCCTGTTGATCCTGAGGTGGTCGGGGTCGAGGAGGATCGCCATGTGAAGGACTAC
GAGAAGAATGGCACGGATGTGCCTCTGCTGGAGGGACATTCGAGTGGACGAGACGAGGCAGTGGGGTTCATCCAGGCATG
GAGAATCCCTGGCGTTGCCCCATTTGCTCTCTGCCTCTTCTTCTGCAAGCTTGTCGCCTACACGTTCCTCTATTGGCTCC
CTTTCTACCTCAGCCACACAGGTTCGTCTAGTTGTATA--------------------TTATGCTGGCGGCACGTGGAGA
TAAAA--AATGAATCTTTTTTTGACCTGACCACCGTTTTGTTCTGTTCCTGAATTTCAGAGATCGGGGGAGAATATCTGT
CAGACTCCGCGGCGGGGATCCTGTCGACCCTGTTCGACGTGGGCGGCGTCGTCGGCGGCATCCTGGCCGGCCACATCTCC
GACCGGCTCGACGCGCGGGCGCTGACGGCGGCGACCTTCACCTTCTCGGCCATACCGGCGCTCTTCTTCTACCGCATCTA
CGGGAGCATCTCGCTGACGTGGAACGTGGCGCTCATGTTCGTGACGGGGGTGCTGGTGAACGGGCCCTACGCGCTCATCA
CCACCGCCGTGTCCGCCGACCTCGGCACGCACAGCTCGCTCAACGGCAACTCCCGCGCGCTGGCCACCGTGACGGCGATC
ATCGACGGCACGGGGTCCATCGGCGCGGCCGTCGGGCCGCTCCTGACGGGGTACATCTCCGCCAAGAGCTGGAGCGGCGT
GTTCACGATGCTCATGGCGTCGGCGCTCGTCGCCGGCCTGCTGCTGTCGAGGCTGGTCGTGGCCGAGATCACCACGAAGA
TGGCGGCGCCGCAGAGGCCCGTCGATTCGGCTGGCGATCTGCCCGTGTCGTCGCTGGAGGAGCCTTAG------------
--------------------------------------------------------------------------------
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------------------------------------------------
>chr2A_1_TraesCS2A01G411200
TAACGGATCGCCCGACTTCTCTTCAACTGTTGTCTTGCAAGTTGCAAAGCTTCGGGCAACTTTAGCCGCTCTGCTCGTTC
CGCTTTCTCTTTCAGATAGAGTAAGATCCGTTGGTTCGGTTGCTTCTGTTGTCGGGCTGCCTTGCCTTGCTTGCAAGACC
GGCCTTGTCTTGCTTCTTCGCCTTTATATTCATTCGTGCCCTTA-----GGCTCGTATTCACGCATCTCTGTGCCCCCTG
CCTACTCTTCTTCCCATTGCTGGTTGCTCAACTGTAGGTGAGCCT---TGCTGCTGTGGTTGAAGGAGCTCTATTTTGTT
GTTTCCTTGGTAATATTATTTCAGTTGATCAATCCAAGTTCAGTCGCACTTCTTGATTTTGGTAGTGATCATTAGATCTT
GCCCCCCTCCATCGACCAAATCTCCCAATCAATTTCAGGTTAATGTCAACTGTATGAAGTTAGTGGTTGTTTTCTCTGCT
CAATCCGGGGGTCCCTGA----------------------TTTTAATTTTGAGCTTGGGCGCTTGGCTATCCTGTTAGGT
TGATTCTGATGAAAAGTGCTCATTTGTAGGCATATCTATGCTGATGCCAGGGGCCGCTCAAACAAAAGATTCAATGATTT
AACAATGTTTCCCTCGTATCATCCCACCTAAAAAATTCGTAACATCCAACCTAATCTTATGACAGCAAGTGCAAAGTGGT
AGCAATATAGCGTGGTGTTTATTTTATTTCAGGAACCATCTAGTCCTTGGCCCCAATAATTCATCCAAGCATTGTTATAG
GATCATTACTCCTTGTTGCAAAATAAGCATTTGCATCCGTCACTTTCATTTTCATAACTCCAAGTTCCACATTTCTGTCG
AGCTGTCGGTCAGCACTTATGATCTTATCTGGATAATTCTGACGTTTGCCGTGTTTGGTTTTTTTCAGATATTAGGCAAT
AACACCAGCCGGCCTTCTTCCCGGCTACATTAACTACCAGTTTGTGGAGAAGCCAAATTCAGGCTCGCTCATGGGCTCCT
CCGCTGAGAGCAGAAGCAGGATGGGTAGCATAAAGCCCATGGGGATTCAGCTCATCGAGTGTGTCCGTGGCGGCCCTCTC
TCCTTCAGATCATCTCAGGCTCTTGTGTTGGTGCTCACCTTCCTGTCATATGCCAGTTACCATGCCACTAGGAAAACCAC
AAGCATTGTCAAGAGTGTTCTTGATCCCAAGACAACAAACCTGGGCTTGTTGCACTGGCCCAGCCATATGTATCTTCAAG
AACTGAAAGGCGCGGCGAACAACACGGCTCTCCAGAGTGGCTGGGCTCCGTTCAACGGCGAGGATGGCACCAAGCTGCTC
GGCGAGATCGACTTGGCTTTCCTTGGGGTGTATGCCATTGGCATGTTCTTTGCCGGCCATTTGGGTGACCGGGTGGATCT
CAGGATCCTCCTGACCATCGGAATGGTAGGGACCGGGCTGTTCACCGCCGCTTTCGGAGCCGGCTACTGGCTCAACATCC
ACAGCTTCTACTACTTTCTCGGCGTCCAGATGATCGCCGGTCTGTTCCAGTCGTCCGGCTGGCCCTCCGTGGTCGCGGTC
GTCGGCAATTGGTTCGGGAAGAGCAAGAGGGGGCTGATCATGGGGATCTGGAACGCTCACACCTCAGTGGGAAACATTTC
TGGCTCGCTGATCGCGGCTGCCATGCTGAAGTTCGGGTGGAGCTGGTCGTTTGCAGTGCCCGGTGCCATGATTGCGCTGG
TCGGGCTGGCCGTGTTTCTCTTCTTGCCTGTTGATCCTGAGGTGGTCGGGGTCGAGGAGGATCGCCATGTGAAGGACTAC
GAGAAGAATGGCACGGATGTGCCTCTGCTGGAGGGACATTCGAGTGGACGAGACGAGGCAGTGGGGTTCATCCAGGCATG
GAGAATCCCTGGCGTTGCCCCATTTGCTCTCTGCCTCTTCTTCTGCAAGCTTGTCGCCTACACGTTCCTCTATTGGCTCC
CTTTCTACCTCAGCCACACAGGTTCGTCTAGTTGTATA--------------------TTATGCTGGCGGCACGTGGAGA
TAAAA--AATGAATCTTTTTTTGACCTGACCACCGTTTTGTTCTGTTCCTGAATTTCAGAGATCGGGGGAGAATATCTGT
CAGACTCCGCGGCGGGGATCCTGTCGACCCTGTTCGACGTGGGCGGCGTCGTCGGCGGCATCCTGGCCGGCCACATCTCC
GACCGGCTCGACGCGCGGGCGCTGACGGCGGCGACCTTCACCTTCTCGGCCATACCGGCGCTCTTCTTCTACCGCATCTA
CGGGAGCATCTCGCTGACGTGGAACGTGGCGCTCATGTTCGTGACGGGGGTGCTGGTGAACGGGCCCTACGCGCTCATCA
CCACCGCCGTGTCCGCCGACCTCGGCACGCACAGCTCGCTCAACGGCAACTCCCGCGCGCTGGCCACCGTGACGGCGATC
ATCGACGGCACGGGGTCCATCGGCGCGGCCGTCGGGCCGCTCCTGACGGGGTACATCTCCGCCAAGAGCTGGAGCGGCGT
GTTCACGATGCTCATGGCGTCGGCGCTCGTCGCCGGCCTGCTGCTGTCGAGGCTGGTCGTGGCCGAGATCACCACGAAGA
TGGCGGCGCCGCAGAGGCCCGTCGATTCGGCTGGCGATCTGCCCGTGTCGTCGCTGGAGGAGCCTTAGGCGGGGCCGGAG
ATGGCCGGACTGTACATTGAATTAGGATGGCACGAGGAGGGTGGCAGGCGGGGCTGGGAAATCGGGAGGTGCGACGGGAA
GAAGGAGCGGGTTCCGCTCTGATTTTC------------CGTGTAGTAGGGCGCTCTTGGGTCTCATGTGATTGTGTCGT
GCTGTGCATATGGAGTGAGTGATTGTTACGCCGAATTCGACCGGATAACAGTGCGGATTATTGCGCGCTG---TCTGCTC
CTCGATGTAGAGCATGTGCCGACCATTTAGACCACGGTGAAGAGCGGTGCTCTCTCTTTTGCAGTATCAGCGACAGATCA
AGGAAACGAAGGCCGGCATTGTACTAAATTTGTAGCCACTTCGGAAAGTGTACATTGATTGTAGCGCATGATACTGTGAA
ATCTGAGATGTCCTTTCACCACTCGGTGAC-----AAGTATGTTCGTATTCTGGTGTTTGTCAAGTGGCGGTTCCTCCCC
CAAACGCACAATTTTATGTGGTCGTCATCAAAGAAAAATTGAAGGGGACCAAGGCCGGCGTAAAACGTCCTATAATTTAT
TAAACAGTATAACTCAGCTAATTAGGAGCCTCCATAGTGATTTGGGATCCTAAACCGTCCGATTAAGCGTATAAACGAGT
GAGATCATTCCATCCTCTCGTAGCATTCATTTGCGCCTGTTCGCTGAAGTCGAACCAACATCAAAAGGGCCGCTGCTCCG
CAGGCTTATTTCTGAGCCTTCTGAAGTACTGGGTTGTGAGGTCGGCCGCCCGGTGACTTAGGTGGTGTTTGGTTCTCTAG
TCCTAGGAATTTTTCTAGTCTTTGGGACTTTTTAAAAAAACTCTCAAGAAGGTGCTTCTAAGGGCTTTTAACAAAAAATC
CTCCCATCCTATTTGGTTTGTTAAAGACTTTTTTTATTCCCAACACAAAAAAGTCCCTGAAACCAAACACCCCCTTATTT
TCTGTCGTGAGAGCGATCGGGCTGCCGATCCGTGGTGCTGCAGCCTAT
>chr2B_1
TAACGGATCGCCCGACTTCTCTTGAACGGTTGTCTTGCAAGTTGCATAGCTTCGGGCAACTT-AGCCTCTCTGCTTGCTC
TGCTTTCTCTTTCTGAAAGAGTAAGATCCGTTGGTTCGGTTGCTTCTGTTGTCGGGCTGCCTTGCCTTGCTTGCAAGACC
GGCCTTGTCGTGCTTCTTCCCCTTTATATTCATCC-------TCCCTTGGGCTCATATTCACGAATCTGTGCGCCT--TG
CCTTCTCCTCTTCCCTCCCA---TTGCTGAACAGGAGGTGAGATG-----CTGCTGTGTTGGTAGGATGTTTTCTGTTCT
CCTTTCGTACCAT--TTATTTCAGTTGATCAATCCAAGTTCAATCGCACTTCTTGATTTTGGTAGTGATCATTAGATCTT
GCCCCCTTTTATCGACCAAATCCTCCAATCAATTTCAGGTTATCTTCAACTGTATGAAGATAGTGATTGTTTTCTCTGTT
CAATCCCGGGTGGTGTATATATCATACAGGGTCCCTGCTTTTTTAATTTTGAGCTTGGGCGCTTGGCTATCCTGTTAGGT
TGATTCTGATGAAAAGTGCTCATTTGTAGGCATATGTATGCTGATACCAGGGGCCGCTCAAACAAAAGATTCAGTGATTT
AACAATGTTGTGCTCGTAACATCCCACCTAAAAAATTCGCAACATCCAACCTAATCTTATGACAGGAAGTGCAAAGTGGT
AGCAATATAGCGTGCTGTTTATTTTATTTCAGGAACCATCTAGTCCTTGGCCCCAATAATTCATTCAAACATTGTTATAG
GATGATTACTCCTTGTTGCAAAATAAGCATTTGCACCTGTCACTTTCATTTTCATAACTCCAGGTTCCACATTTGTGTCA
AGCTGTCAGTCAGCACTTATGATCTTATCTGGATAATTCTGACATTTGCCGTGTTTGGTTTTTTTCAGATATTAGGCAAT
AACACCAGCCGGCCTTCTTCCCGGCTACATTAACTAACGGTTTGTGGAGAAGCCAAATTCAGGGTCACGCATGGGCTCCT
CTACTGAGAGCAGAAGCAGAATGGGTAGCATAAAGCCCATGGGGATTCAGCTCATCGAGTGTGTCCGCGGCGGCCCTCTC
TCCTTCAGATCATCTCAGGCTCTTGTGTTGGTGCTCACCTTCCTGTCATATGCTAGTTATCATGCTACTAGGAAAACCAC
AAGCATTGTCAAGAGTGTTCTTGATCCCAAGACAACAAACCTAGGCTTGTTGCACTGGCCGAGCCATATGTATCTTCAAG
AACTGAAAGGCGCAGCGAACAACACGGCTCTCCAGAGCGGCTGGGCTCCGTTCAATGGCGAGGATGGCACCGGGCTGCTC
GGCGAGATCGACTTGGCTTTCCTTGGGGTGTATGCCATTGGCATGTTCTTTGCCGGCCATTTGGGTGACCGGGTGGATCT
CAGGATCCTCCTGACCATCGGAATGGTAGGGACCGGGCTGTTCACCGGCGCTTTCGGAGCTGGCTACTGGCTCAACATCC
ACAGCTTCTACTACTTTCTGGGCGTCCAGATGATCGCCGGCCTGTTCCAGTCGTCCGGCTGGCCCTCCGTGGTCGCGGTC
GTCGGCAATTGGTTTGGGAAGAGTAAGAGGGGGCTGATCATGGGGATCTGGAACGCTCACACCTCGGTGGGAAACATTTC
TGGCTCGCTGATCGCGGCTGCCATGCTGAAGTTTGGGTGGAGCTGGTCGTTTGCAGTGCCAGGTGCCATGATCGCGCTGG
TCGGGCTCGCCGTGTTTCTGTTCTTGCCTGTTGATCCGGAGGTGATAGGCGTCGAGCAGGATCGCCATGTGAAGGACTAC
GAGAAGAATGGCACGGATGTGCCTCTGCTGGAGGGACATTCGAGTGGACGAGACGAGGCAGTGGGGTTCATCCAGGCATG
GAGAATTCCCGGCGTTGCCCCGTTTGCTCTCTGCCTCTTCTTCTGCAAGCTTGTGGCCTACACGTTCCTGTATTGGCTCC
CCTTTTACCTCAGCCACACAGGTTCGTCTAGTTGTATA--------------------TCATGCTGGCAGCACGTGGAGA
TAAAA--TATGA-----------ACCTGACCGCCGTTTTGTTCTGGTCCTGATTTTCAGAGATCGGGGGAGAATATCTGT
CAGACTCTGCGGCGGGGATCCTGTCGACCCTGTTCGACGTGGGCGGCGTCGTCGGCGGCATCCTGGCCGGCCACATCTCC
GACCGGCTGGACGCGCGGGCGCTGACGGCGGCGACCTTCACCTTCTCCGCGATACCGGCGCTCTTCTTCTACCGCATCTA
CGGGAGCATCTCGCTGACGTGGAACGTGGCGCTCATGTTCGTGACGGGGGTGCTGGTGAACGGGCCCTACGCGCTCATCA
CCACCGCCGTGTCCGCCGACCTCGGCACGCACAGCTCGCTCAACGGCAACTCGCGCGCGCTGGCCACCGTGACGGCGATC
ATCGACGGCACGGGGTCCATCGGCGCGGCCGTCGGGCCGCTCCTGACGGGGTACATCTCCGCCAAGAGCTGGAGCGGCGT
GTTCACGATGCTCATGGCGTCGGCGCTCGTCGCCGGGCTGCTGCTGTCGAGGCTGGTCGTGGCGGAGATCACCGCGAAGA
TGGCGGCGTCGCAGAGGCCCGTTGATTCGGCGGGCGATCTGCCCGTGTCGTCGCTGGAGGTACCTTAGGCGGGGCCGGAG
ATGGCCGGACTGTACATTGA-TTAGGGCGGTGCGT---------------GGGCCGGGAAATCGGGAGGTGCGACGGGAA
GAAGGAGCGGGCTCCCCTCTGATTTTCTAACCGAGGTGGCGTGTAGTAGGGCGCTCTTGGGTCTCATGTGATTGTGTCGT
GCTGTGCATATGGAGTGA----TTGTTACGCCGAATTTGTTCGGATAACGGTGCGGATTATTGCGCACTGTCTTCTGCTC
CTCGATGTAGAGCATGTGCCGACCATTTAGACCGTGATGAAGAGCGGTACTCTCTCTTTTGCAGTATCAGCGACAGATCA
AGGAAACGAAGGCCGGCACTGTACTAAATTTGTAGCCACTTCGAAAAGTGTACATTGATTGTAGCGCATGATACTGTGAA
ATCTGAGATATCCTTTCACCACTCGGTGAGAAGTAAAGTATGTTCATATTCTGGTGTTTGTCAAGTGGCGGTTCCTCCCC
AAAACACACAACTTTGTGTGGTTG--------GAAAAATTAAAGGGGACTAAGGCCGGCGTAAAACGGCCTAATAA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>chr2D_2
-AACGGATCGCCCGTCTTCTCCTCAACGGTTGTCTTGCAAGTTGCATAGCTTCGGGCAACTTTAGCCTCTCTGCTCCCTC
TGCTTTCTCTTTCTGA-AGAGTAAGATCCGTTGGTTCGGTTGCTTCTGTTGTCGGGCTCCCTTGCCTTGCTTGCAAGACC
GGCCTTGTCGTGCTTCTTCCCCTTTATATTCATCCATGCCCTTCCCTTGGGCTCATACTCACGCATCTGTGTGCCT--TG
CCTTCTCCTCTTCCCTCCCA---TTGCTCAACTGGAGGTGAGATGAGATGCTGCTGTGGTGGAAGGATGTTTTCTGTTCT
CCTTTGGTATCAT--TTATTTCAGTT-ATCAATCCAAGTTCAATCGCAGTTCTTGATTTTGGTAGTGATTATTAGATCTT
TCCCCCTTCCCTCGACCAAATCTTCCAATCAATTTCACGTTATCTTCAACTGTATGAAGATAGCGATTGTTTTCTCTGTT
CAATCCGGGGTGGTGTGTATATCATACAGGGTCCCTGCTTTTTTAATTTTGAGCTTGGGCGCTTGGCTATCCTGCTAGGT
TGATTCTGATGAAAAATGCTCATTTGTAGGCATATATGTGCTGATGCCAGA-GCCGCTCAAACAAAAGATTCAGTGATTT
AACAATGTTGCGCTCACAACATCCCACCTACATAATTCGTGACATCCAACCTATAATCATATCCTAGGAGGT--------
-GCAGTATTGCGTGCTATTTATTTTATTTCAGGAACCGACTAGTCCCTGGCCCCAATAATTCATCCAAGCATTGTTATAG
GATGATTACTCCTTGTTGCAAAATAAGCATTTGCATCCGTCACTTTCATTTTCATAACTCCAAGTTCCACATTTGTGTCG
AGCTGTCGGTCAGCACTTATGATCTTATCTGGATAATTCTGACGTTTGCCGTGTTTGGTTTTTTTCAGATATTAGGCAAT
AACACCAGCCGGCCTTCTTCCCGGCTACGTTAACAGA----TTGTAGAGAAGCCAAATTCAGGCTCACTCATGGGCTCCT
CAACTGAGAACAGAAGCAGAATGGGTAGCATAAAGCCTATGGGGATTCAGCTCATCGAGTGTGTCCGTGGCGGCCCTCTC
TCCTTCAGATCATCGCAGGCTCTTGTGTTGGTGCTCACCTTCCTGTCATATGCCAGTTACCATGCCACTAGGAAAACCAC
AAGCATTGTCAAGAGTGTTCTTGATCCCAAGACAACAAACCTAGGCTTGTTGCACTGGCCCAGCCATATGTATCTTCAAG
AGCTGAAAGGCGCGGCGAACAACACGGCTCTCGAGAGTGGCTGGGCTCCGTTCAACGGCGAGGATGGCACCCAGCTGCTC
GGCGAGATCGATCTTGCATTCCTTGGGGTGTATGCAATTGGCATGTTCTTTGCTGGCCATCTGGGTGACCGGGTGGATCT
CAGGATCCTCCTGACCATCGGAATGGTCGGAACCGGGCTGTTCACCGCCGCTTTCGGAGCCGGCTACTGGCTCAACATCC
ACAGCTTCTACTACTTTCTGGGCGTCCAGATGATCGCCGGCCTGTTCCAGTCGTCCGGCTGGCCTTCCGTGGTCGCAGTC
GTCGGCAATTGGTTCGGGAAGAGCAAGAGGGGGCTGATCATGGGGATCTGGAACGCTCACACCTCCGTGGGGAACATTTC
TGGCTCACTGATCGCCGCTGCCATGCTGAAGTTCGGGTGGAGCTGGTCGTTTGCAGTCCCTGGTGCCATGATCGCGCTGG
TCGGGCTCGCCGTGTTTCTGTTCTTGCCCGTTGACCCCGAGGTGATAGGCGTCGAGGAGGATCGCCATGTGAAGGACTAC
GAGAAGAATGGCACGGATGTGCCTCTGCTGGAAGGACATTCCAGTGGTAGAGACGAGGCAGTGGGGTTCATTCAGGCATG
GAGAATCCCCGGCGTTGCCCCATTTGCTCTCTGCCTCTTCTTCTGCAAGCTTGTCGCCTACACGTTCCTCTACTGGCTTC
CCTTCTATCTCAGCCACACAGGTTCGTCAAGTAGTTCTATATAGTTCTTTTCTTGGGTTCGTGCCATTAGCAGTTGGAGA
TAAAAAAAATGAATCTTTTTCTGACCTGACCACCGTTTTGTTCTGTTCCTGAATTTCAGAGATCGGGGGAGAATATCTGT
CAGACTCTGCGGCGGGGATCCTGTCGACCCTGTTCGACGTGGGCGGCGTCGTCGGCGGCATCCTCGCCGGCCACATCTCC
GACCGGCTGGACGCGCGGGCGCTGACGGCGGCCACCTTCACCTTCTCCGCGATCCCGGCGCTCTTCTTCTACCGCATCTA
CGGGAGCATCTCGCTGACGTGGAACGTGGCGCTCATGTTCGTGACGGGGGTGCTGGTGAACGGGCCCTACGCGCTCATCA
CCACCGCCGTGTCCGCCGACCTCGGCACGCACAGCTCGCTCAACGGCAACTCCCGCGCGCTGGCCACCGTGACGGCGATC
ATCGACGGCACGGGCTCCATCGGCGCGGCCGTCGGGCCGCTCCTGACGGGGTACATCTCCGCCAAGAGCTGGAGCGGCGT
GTTCACGATGCTCATGGCGTCGGCGCTCGTCGCGGGGCTGCTGCTGTCGAGGCTGGTCGTGGCCGAGATCACCGCGAAGA
TGGCGGCGCCGCAGAGGCCCGTCGAATTGGCGAGCGACCTGCCCGTGTCGTCGCTGGAGGAACCTTAGGCGGGGCCGGAG
ATGGCCGGACTGTACATTGAATTAGGGCGGCGGGT---------------GGGCCGGGAAATCGGGAGGTGCGACGGGAA
GAAGGAGCGGGCTCCCCTCTGATTTTCCAACCGAGGTGGCGTGTAGTAGGGCGCTCTCGGGTCTCATGTGATTGTGTCGT
GCTGTGCATATGGAGTGA----TTGTTACGCCGAATTTGTTCGGATAACGGTGCGGATTATTGCGCGCTG---TCTGCTC
CTCGATGTAGAGCATGTGCCGACCATTTAGACCATGATGAAGAGCGGTACTCTCTCTTTTGCAGTATCAGCGACAGATCA
AGGAAACGAAGGCCGGCACTGTACTAAATTTGTAGCCACTTCGGAAAGTGTACATTGATTGTAGCGCATGATGCTGTGAA
ATCTGAGATATCCTTTCACCACTCGGTGACAAGTAAAGTATGTTCGTATTCTGGTGTTTGTCAAGTGGCGGTTTCTCCCC
AAAACACACAATTTTGTGTGATCGTTATCAAAGAAAAATTGAA-------------------------------------
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------------------------------------------------
>SNPs
---------------------------S------------------S--------------------S---------S--
S------------S--S---------------------------------------------------------------
---------S---------S-------------S-S-------S----------S-------------S------SSS--
---S---S-------SSSSSSSS-----------S-------SSS---------------S------SS-S-SS-S-SS-
SS--S-S-SSS-SSS---------------------------S-------------------------------------
------S----------------S------------------SSS--------------S-----S------------S-
----------SSSSS--S--------------------------------------------------------------
-----------------------------------S-------------------------------------S------
---------S-S------S----------------------------------------------S--------------
--------------S-----------------------------------------------------------------
---S----------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
------------------------------------S-S---------------------------S-------------
-SS----------------S------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------------S---------------------------------------
-----------------------------------------------------------------S--------------
------------------------------------------------------------S-----------S-------
-------S-----------S-----------------S------S-S--S------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
-S---------------------------------------------------------S--------S-----------
--------------------S-----------------------------------------------------------
-------S------------------------------------------------------------------------
--------S--------------------------------------S--S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S------------------------------------S------
-------------------------------S-----------------------------S------------------
--------------------------SS---S--SSSSSSSSSSSSSSSS----S-------------------------
-----------S---S----------------------------------------------------------------
------------------SSSS---------------S-SS--------S------------------------------
----------------------------------S-S-----------S-------------------------------
------------------S-------------------------------------------------------------
---------S----------------------------------------------------------------------
S----S---------S---------S-----------------------S-----------------S----SS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_28
--------CGCCCGACTTCTCTTCAACT----------------------------------------------------
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------------------------------------------------
>reverse_1043
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCTGAGAGCAGAAGCAGGAT----------------------------------------------------------
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------------------------------------------------
>forward_311
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TGCTGTGGTTGAAGGAGCTC---------
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------------------------------------------------
>reverse_2291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------CATACCGGCGCTCTTCTTCT----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------
>forward_1805
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------GCCTGTTGATCCTGAGGTGG-----------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_3466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------GTACTGGGTTGTGAGGTCGG-----------------------------------
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------------------------------------------------
