>input_sequence_46029
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---------------------------------------------------ATGGCCGCCGCGCCGTCCACTGCGGCTCG
GCAGGTGGAGGACGCGGTCATGGCGAGGCTCCGGGCCTGCGCCACCTTCCGCGACCTCCTCCGCGTCCACGCCCACGTCG
TGCAGCTGTCCCTCTCGCAGAGCAGCTACATCGCCACCCAGATCATCCAGCTCTGCAACGCCCACGGCCGCACCGCACAC
GCCGCGCGGGTGTTCGACCAGGTGCGCGAGCCCAACCTACACCTGCACAACGCCATGATCAAGGCCTACGCCCAGAACCA
CCTGCACCGCGAGGCGGTCGCGGTGTACATTCGCATGCTGAGGTGCCGCCCATTTCCGTCGACTGCTTGTGCCGCCGGCG
ACCGGTTCACGTACCCGTTCCTGCTCAAGGCTTGCGGCGGCCTGGCGGCGCTCGGACTGGGCAAGCAGGTGCACGCTCAC
GTGGTGAGGTCCGGGTGCGAGTGCAACGCCGTCGTGCAGAACTCCATGATCGAGATGTACACGCGCGCCGGCGATCTGTC
GCTCGCCCGCAAGGTGTTCGACGGAATGCAGGAGAGGGATGCGGTCACTTGGAACACTGTTATATCGGCGCATGCGAGGC
TGGGTCAGATGAGGAAAGCGAGGGCACTATTCAACTCCATGCCGGAGAAGACGATCGTTTCCTGGACTGCACTGGTGTCC
GGGTACACGACAGCGGGGGACTTCTCTGGCGCCGTCGAGGCGTTCCAGTCAATGCAAATGGAAGGCTTTGAACCGGACGA
CGTAAGCATCGTCGCGGTGTTGCCGGCGTGTGCCCAACTGGGAGCCCTGGAGCTAGGCAGGTGGATATACGCCTACTGTA
ACAGGCACAGAATGCTGCGCGAGACATACGTATGCAATGCACTGATGGAGATGTACGCAAGGTGCGGATGCATCGACCAA
GCACTCCAGCTGTTCGACGGTATGGAGGAGAAGGATGTCATCTCATGGAGCACGATGATCAACGGCCTTGCGGCGCATGG
GAGAGCAAAGGAGGCGGTCCTGTTGTTCGTGGATATGGAGAGGGAGGGGAAGGTGAGGCCCAACGGCATCACATTCGTCG
GGCTCCTGTCAGCCTGCTCCCACGCCGGGCTCCTGGACGAAGGGCTGAACTACTTCGACCGCATGAAGGAAGTTTATGGC
ATCGAACCTGGCGTCGAGCACTATGGCTGCGTCGTCGACCTCCTCGGCCGGTCAGGACAAATCGTGCGTGCTCTGAATCT
CATAGTAGACATGCCAGTTCCTGCCGATGCGAAGATATGGGGCTCAATGCTCAGCGCATGCCGAAGCCACGGAGATGTCG
ACACGGCCGTGGTTGCTGCCGAGCGGCTTGTCGCACTGGAACCAGACGACGTTGGCAACCTCGTCATGCTAGCCAACGTG
TACGCCGCGGCGAGGCAGTGGAGCGAGGTTGCAAGCACGAGGAAGACGATAAGGAGCAGGAGCATGAAGAAGACCCCGGG
GTGCAGCCTGATCGAGGTGGACAACGTGGTGCAGGAGTTCGTCGCTGGAGAAGACCTGAAACCTGAATTTGGAGGCCTTG
TTGGCGTTCTGGACATCCTGGCCTCGCAGCTTGCAGAGGAGGGTGTAGATTTCATCGATCCAGGTTGTTTTGTTGATGTT
AATATGTCCACAATTGATCGGTGCTGA-----------------------------------------------------
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>chr1B_1_TraesCS1B01G284100
TGACCATTTGTCAGTCGATGGGTGTATTTTACCTTTTTTTTGTAAATTTTGTAGTGCAAAAACCAATGCAAATAATCAGA
TGAAGGTCTGGAGAGTGCTTTCATATTATGGGTTTGTTTGAAATCTGGGAAAATAGTCAAGAAAATCTAAACTCTTTGCT
ATGTGCATCACATGATGCAGAGGTCAAAAGTATTCACCCTTCCCGAAAAAAAAAACTCTGAACAAGATCATGATTATAAA
GAATGCCATTAGTATGAAGTAAAAATGAAAAAGATAACCAATCAATATAATTGTCTAAATTTCGTATAAAAACAACATGC
ATAATTTCCACTTCTAATTTTTGCACATGACATATTCAACCACGAACTTTATCATGCTTTTTGAAATGTCTGAATACAAA
GGTACTTTTTTTAGAACTAGTGTAGCCGTGTAGGATCAACTTAAAACGGTTTTGAATAATTATTTAATTTAGAAGGTTTC
ATAGCTTACAATCCACTTCAGACTAAGCACAATCGTTCAAGGTTCAAAAAAATGTTTTTCTCTTGATCTTATGATATATT
TTCCGATTTCTGCCTTATCTAATCACTTCTTACATATAAATCCATACCGTGGACAGGATACAAATGTCGGTATCAGCATG
CATAAGCGTACCTGGAGGCCCAAATCTTTACTCCTAGATTATGTGGTAGAAGTTGATTATCCTAGAATAGTCAAACATGG
CTGCTAGACACAGCTTAGAGGAGATCCGCAGCTTATGTGGTTTTGTCCAAAGTAAAAACTATGTTATCCTACGACGGAC-
-TACGACCAAGCTTACTAGAGGA---------GATCCGCCAAACTTTCTTTCCTTTGAGCTAAATCCTCCATCCCTGGGT
GATGCCAAAAAGGCAAAAACAAATCAAATCTGCGTCCTCCCGCTTGAAACAAAAGAGAGCGAATAGGCGTCGGTTGCTCA
CCAGTCACCAACGCAGCCCTCTGCCGCCAATTCGTCGAACACCCTGTCGACATGGCCGCCGCGCCGTCCACTGCGGCTCG
GCAGGTGGAGGACGCGGTCATGGCGAGGCTCCGGGCCTGCGCCACCTTCCGCGACCTCCTCCGCGTCCACGCCCACGTCG
TGCAGCTGTCCCTCTCGCAGAGCAGCTACATCGCCACCCAGATCATCCAGCTCTGCAACGCCCACGGCCGCACCGCACAC
GCCGCGCGGGTGTTCGACCAGGTGCGCGAGCCCAACCTACACCTGCACAACGCCATGATCAAGGCCTACGCCCAGAACCA
CCTGCACCGCGAGGCGGTCGCGGTGTACATTCGCATGCTGAGGTGCCGCCCATTTCCGTCGACTGCTTGTGCCGCCGGCG
ACCGGTTCACGTACCCGTTCCTGCTCAAGGCTTGCGGCGGCCTGGCGGCGCTCGGACTGGGCAAGCAGGTGCACGCTCAC
GTGGTGAGGTCCGGGTGCGAGTGCAACGCCGTCGTGCAGAACTCCATGATCGAGATGTACACGCGCGCCGGCGATCTGTC
GCTCGCCCGCAAGGTGTTCGACGGAATGCAGGAGAGGGATGCGGTCACTTGGAACACTGTTATATCGGCGCATGCGAGGC
TGGGTCAGATGAGGAAAGCGAGGGCACTATTCAACTCCATGCCGGAGAAGACGATCGTTTCCTGGACTGCACTGGTGTCC
GGGTACACGACAGCGGGGGACTTCTCTGGCGCCGTCGAGGCGTTCCAGTCAATGCAAATGGAAGGCTTTGAACCGGACGA
CGTAAGCATCGTCGCGGTGTTGCCGGCGTGTGCCCAACTGGGAGCCCTGGAGCTAGGCAGGTGGATATACGCCTACTGTA
ACAGGCACAGAATGCTGCGCGAGACATACGTATGCAATGCACTGATGGAGATGTACGCAAGGTGCGGATGCATCGACCAA
GCACTCCAGCTGTTCGACGGTATGGAGGAGAAGGATGTCATCTCATGGAGCACGATGATCAACGGCCTTGCGGCGCATGG
GAGAGCAAAGGAGGCGGTCCTGTTGTTCGTGGATATGGAGAGGGAGGGGAAGGTGAGGCCCAACGGCATCACATTCGTCG
GGCTCCTGTCAGCCTGCTCCCACGCCGGGCTCCTGGACGAAGGGCTGAACTACTTCGACCGCATGAAGGAAGTTTATGGC
ATCGAACCTGGCGTCGAGCACTATGGCTGCGTCGTCGACCTCCTCGGCCGGTCAGGACAAATCGTGCGTGCTCTGAATCT
CATAGTAGACATGCCAGTTCCTGCCGATGCGAAGATATGGGGCTCAATGCTCAGCGCATGCCGAAGCCACGGAGATGTCG
ACACGGCCGTGGTTGCTGCCGAGCGGCTTGTCGCACTGGAACCAGACGACGTTGGCAACCTCGTCATGCTAGCCAACGTG
TACGCCGCGGCGAGGCAGTGGAGCGAGGTTGCAAGCACGAGGAAGACGATAAGGAGCAGGAGCATGAAGAAGACCCCGGG
GTGCAGCCTGATCGAGGTGGACAACGTGGTGCAGGAGTTCGTCGCTGGAGAAGACCTGAAACCTGAATTTGGAGGCCTTG
TTGGCGTTCTGGACATCCTGGCCTCGCAGCTTGCAGAGGAGGGTGTAGATTTCATCGATCCAGGTTGTTTTGTTGATGTT
AATATGTCCACAATTGATCGGTGCTGACCATTGCACATGCGTTATTGTGATTAGCGAAAGGAAACAGGTTAGTTCGGACG
AGCAGTCTGGTAACTGCGATTCGTTGCTTCTTTCGTAAGAAATTCTCTGAACCGCGTTATTTTCAGTATTCCTTATTTTT
CAAATGCTTTTTTTCAGTTTTCAGACGTTCTTCAAAAGAAGATGTTAGAATTCTGGAAGGATTTCCATTTGAGAGAAACT
TTTTTTGAGTGATCCCATTTCGGATAAACGACGACTCAGAAATTTCGGAACGCGGGTAATGGCGGCCCTTTAGAAAAGGC
AGCCCAAAGCTTGTAGTCCAAATAGATTGTGGCCCATTTTGTGCATCTCCTAGGCACTCATGAGTCATGAGAACGGTACA
AAACATGGGCATCTCCAATCGTTGACCTTGAGAATGGACACTGTATTTGTTCACTGACGGTGATACGGAAGTCGGTCATC
CAGCCGCGTCCGCATACATTTCAAACCGATTTTAAACAAACCGGATGACTTTCATACGAAAACACTACGGAATTCACTCA
AGTTCGAACATAATTTACGTAAAACGAACGATATTTCATCCGTTTATTGAAAGTGCAACTATTCCTAGGTGGTTTTGATA
ATTCCTAACAACATATAGCTCATTCAGCTAATACTATTCCAAGATAAATATTTCAGGAAAACTCAATGATTGGCATGGCA
TGAATGAGAAAAGTGAACCCCTCAAAATGCTAAGGAGAAAAGGATTGGCTCAAGCTCAAAGCACAAGACTCTACACTTTA
TATTTTAGTGATCCAAGATCACATTGAGTCTATAGGAAAAGCCAATACTATCAAGGAGGGATGAGGTGTTGCTTAATGAG
GTTCTTGCTCAAAGTGCTTAGTGATATGCTCAAAAGCCCTCAACTACTTTCTCACATCCACATATGACCTAAACCAAAAG
TCAAACTCGGCCCACCGATTCTTTCTATCCAGCGCCACCGAGTTCAGATGTCATAGCCACTGCTACA
>chr1A_616
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-------------------------------------------------------GGATACAAATGTCGGTATCAGCATG
CATAAGCATACCTGGCGGCCCAAATCGTTACTCCTAGGTTATGTGGTACAAGTAGATTATCCTAGAGTAGTCAAACATGG
CTGCTAGACACAGCGG--------------------GTGGTGTTGCCCAAAGTAAAAACTATGTTATCCTACGACTACGA
TTACGACCAAGCTTACTAGAGGAACTCGCTTAGATCCGCCAAACTTCCTTTCATTTGAGCTAAATCCTAAATCCCTGGGC
GATGC--------CAAAAACAAATCAAATCTGCTTCCTCCCGCTTGAAACAAAAGAGAGCGAATAGCCGTCGGTTGCTCA
CCCGTCACCAACACAGCCCTCTGCCGCCAATTCGTCGAACACCCTGTCTGCCAGAGCCATGGCC--------GCGGCTCG
GCAGGTGGAGGACGCCGTCATGGCGAGGCTCCGGGCCTGCGCCACCTTCCGCGACCTCCTCCGCGTCCACGCCCACGTCG
TGCAGCTGTCCCTCTCGCAGAGCAGCTACATCGCCACCCAGATCGTCCAGCTCTGCAACGCCCACGGCCGCACCGCGCAC
GCCGCGCGGGTGTTCGCCCAGGTGCACGAGCCCAACCTACACCTGCACAACGCCATGATCAAGGCCTACGCCCAGAACCA
CCTGCACCGGGAGGCGGTCGCGGTGTACGTTCGCATGCTGAGGTGCCGCCCATTTCCGTCGACTGGTTGCCCCGGCGGCG
ACCGGTTCACGTACCCGTTCCTGCTCAAGGCTTGCGGCGGCCTGGCGGCCCTCGAACTGGGCAAGCAGGTGCACGCGCAC
GTGGTGAGGTCCGGGTGCGAGTGCAACGCCGTCGTGGAGAACTCCATGATCGAGATGTACACGCGCGCCGGCGATCTGTC
GCTCGCGCGCAAGGTGTTCGACGGAATGCAGGAGAGGGATGCGGTCACTTGGAACACGGTTATATCGGCGCACGCGAGGC
TGGGTCAGATGAGGAAAGCGAGGGCGTTATTCAACTCCATGCCTGAGAAGACCATCGTTTCCTGGACTGCAATGGTGTCC
GGGTACACGGCAGCGGGGGACTTCTCGGGCGCCGTCGAGGCGTTCCGGTTGATGCAAATGGAAGGCTTTGAGCCGGACGA
CGTGAGCATCGTCGCGGTGTTGCCGGCGTGCGCCCAGCTCGGAGCCCTGGAGCTAGGCAGGTGGATATACGCCTACTGTA
ACAGGCACCGAATGCTGCGCAAGACATACGTATGCAATGCGCTGATGGAGATGTACGCGAAGTGCGGATGCATCGACCAA
GCACTCCAGCTGTTCGACGGTATGGACGAGAAGGATGTCATCTCGTGGAGCACGATGATCAGCGGCCTTGCGGCGCATGG
GAGAGCAAAGGAGGCGGTCCTGTTGTTCGTGGATATGGAGAGGGAGGGGAAGGTGAGGCCCAACGGCATCACATTTGTCG
GGCTCCTGTCAGCCTGCTCCCACGCCGGGCTCCTGGACGAAGGGCTGGACTACTTCGACCGCATGAAGGACGCTTATGGC
ATCGAACCTGGCGTCGAGCACTATGGCTGCATCGTCGACCTCCTCGGTCGGTCAGGACAAATCGTGCGTGCTCTCAATCT
CATACTGGACATGCCATTTCCTGCCGATGCGAAGATATGGGGCTCAATGCTCAGCGCATGCCGAAGCCACGGCGATGTCG
ACACGGCCGTGGTGGCTGCCGAGCGGCTCGTCGCGCTGGAACCAGACGACGTCGGCAACCTAGTCATGCTGGCCAACGTG
TACGCCGCGGCGAGGCGGTGGAGCGAGGTCGCGAGCACGAGGAAGTCAATAAGGAGCAGGAGCATGAAGAAGACCCCGGG
GTGCAGCCTGATCGAGGTGGACAACGTGGTGCAGGAGTTCGTCGCTGGAGAGGACCTGAAACCTGAATTTGGAGGCATTG
TTGGCGTTCTGAACATCCTGGCCTCGCAGCTTGCAGAAGAGGGTGTAGATTCCATCGATTCAGATTGTTTTGTTGATGCA
AATATGTCTGCTATTGT---GTTCTGACCATTGCACATGTGTTGTTGTGA------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-------S-------S----------S----------S----------S----S------------S-------------
--------------SSSSSSSSSSSSSSSSSSSSSS-----S---S-----------------------------SSSS-
----------------------------------------------S-----S---------------SS---------S
-----SSSSSSSS--------------------S--------------------------------S-------------
--S---------S-----------------------------------SS-SS-SS-SSS-SS-SSSSSSSS--------
---------------S----------------------------------------------------------------
--------------------------------------------S-------------------------------S---
----------------S--------S------------------------------------------------------
---------S------------------S------------------------------------S---SS---S-----
-------------------------------------------------S----S---------------------S---
------------------------------------S-------------------------------------------
------S--------------------------------------------------S--------------S-------
-------------------------SS----------------S--------S------------------S--------
---------S----------------S-------------------S--SS--------------------S--------
---S--------------------------S-----S--S----------------------------------------
--------S-----------S-------------------S-----------------S-S-------------------
--------------------------S-----------------S----------------S------------------
---------------------------------------------------------------------------S----
-----------------------------------------------S----------------------S-S-------
------------------------------S----------------S--------------------------S-----
----S-S---------S-------------------------------------------------------S-------
-------------S--------------S-----S-----------------S--------S--------S---------
----------------S------------S--S------------S-S--------------------------------
---------------------------------------------------S------------------------S---
-----------S-------------------------S-------------S-------S---S--------------SS
--------SS-S----SSSS--S----------------S---S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_891
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-----------------------------------------------------------------------TCCCTGGGT
GATGCCAAAAA---------------------------------------------------------------------
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>reverse_2373
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----------------------------------------------------TGGCAACCTCGTCATGCTAG--------
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>forward_1013
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---------------------------------GTCGAACACCCTGTCGACAT---------------------------
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>reverse_2917
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------------------------------------CAGAAATTTCGGAACGCGGG------------------------
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